HHsearch alignment for GI: 254780675 and conserved domain: TIGR01292

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00  E-value=4.9e-44  Score=338.68  Aligned_cols=290  Identities=27%  Similarity=0.437  Sum_probs=218.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC
Q ss_conf             34899989857999999999879939999788886---246325673708899999999999842117821348754-49
Q gi|254780675|r    5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG---GICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE-FN   80 (481)
Q Consensus         5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~-~~   80 (481)
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGq-----------l~----~T~~vENYPGf-------~e~i~   58 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQ-----------LT----TTTEVENYPGF-------PEGIS   58 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC-----------CC----CCCEEECCCCC-------CCCCC
T ss_conf             9289984786788899998874672789835777745553-----------33----22065136868-------88766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf             99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r   81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA  160 (481)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs  160 (481)
T Consensus        59 G~~L~~~M~~Qa~~f-----------G~~~~~G~~------v~~v~~~~~~-yE-~~-~F~~~~~-~~y~a~avIiAtGa  117 (321)
T TIGR01292        59 GPELMEKMKEQAKKF-----------GAEIIYGEE------VIRVDKSDRA-YE-SD-PFKVKTG-KEYTAKAVIIATGA  117 (321)
T ss_pred             HHHHHHHHHHHHHHC-----------CCCEEECCE------EEEEECCCCC-CC-CC-EEEEEEC-CEEEEEEEEEECCC
T ss_conf             288999999999870-----------673662670------5686337884-36-61-0389717-56886589991387


Q ss_pred             CCCCCCCCC-CC----CCCC---CCCCC--CEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf             311101113-45----5542---21245--21113334443215654332100023210133310000000012222222
Q gi|254780675|r  161 RPRHIEGIE-PD----SHLI---WTYFD--ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSE  230 (481)
Q Consensus       161 ~p~~~~g~~-~~----~~~~---~t~~~--~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~  230 (481)
T Consensus       118 ~~r~lg-~~kGE~ef~GrGVSyCA~CDGA~~ffk~---K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~fR------  187 (321)
T TIGR01292       118 EARKLG-IPKGEDEFLGRGVSYCATCDGASPFFKN---KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKFR------  187 (321)
T ss_pred             HHHHCC-CCCCHHHHCCCCEEEEEHHCCCCHHHCC---CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC------
T ss_conf             154237-8866455326866672231054012059---889998798248888899985387679997798636------


Q ss_pred             CCCCCCHHHHHC---CCCCCCCHHHHHHCCCC--CCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCC-CCC
Q ss_conf             122210012201---23322100134420223--431012440-36740211023224305742200002322211-235
Q gi|254780675|r  231 ISQFVQRSLQKR---GIKILTESKISSVKQKG--DMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG-VKT  303 (481)
Q Consensus       231 ~~~~~~~~l~~~---Gv~i~~~~~v~~v~~~~--~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g-i~~  303 (481)
T Consensus       188 A~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~  265 (321)
T TIGR01292       188 AEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLEL  265 (321)
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEE
T ss_conf             328999899837898789964868999961783155335899623884889984447898412032057--650783467


Q ss_pred             CC-EEEEECCC----CEEECCCCEEECCCCC--CCCCCCCCCCCHHHHHHHHC
Q ss_conf             73-26642487----4230258588304445--53244412320255554302
Q gi|254780675|r  304 SN-GCIIVDGY----GRTNVPGIYAIGDVAG--APMLAHKAEHEGIICIEKIA  349 (481)
Q Consensus       304 ~~-g~i~vd~~----~qTs~p~IyA~GDv~g--~~~l~~~A~~qg~~aa~~i~  349 (481)
T Consensus       266 D~~GyI~t~~~~Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a~  318 (321)
T TIGR01292       266 DEGGYIVTDEGLGNTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSAE  318 (321)
T ss_pred             CCCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHH
T ss_conf             69986886175486123066868973044068861376787000689999998