HHsearch alignment for GI: 254780675 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.97 E-value=1.3e-30 Score=241.13 Aligned_cols=276 Identities=20% Similarity=0.295 Sum_probs=191.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-HH
Q ss_conf 89998985799999999987993999978-88862463256737088999999999998421178213487544999-99
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-DI 84 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 84 (481)
T Consensus 146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG-------------------------LLtFGI-----PsFKLdK~V 195 (480)
T TIGR01318 146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG-------------------------LLTFGI-----PSFKLDKAV 195 (480)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-------------------------CCCCCC-----CCHHHHHHH
T ss_conf 89977886025799987517855999747703076-------------------------013688-----851102789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC---
Q ss_conf 99999999985344687630141421000001122221002368752001355554322586389972455257543---
Q gi|254780675|r 85 VKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR--- 161 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~--- 161 (481)
T Consensus 196 ~~~Rr~i-----------f~~MGi~F~Ln~---------EvGr-D~~l~------------~LLe~YDAVFlGvGTY~~~ 242 (480)
T TIGR01318 196 LSRRREI-----------FTAMGIEFKLNT---------EVGR-DISLD------------DLLEDYDAVFLGVGTYRSM 242 (480)
T ss_pred HHHHHHH-----------HHHCCCEEECCC---------EEEC-CCCHH------------HHHHHCCEEEEECCCCCCC
T ss_conf 9999999-----------975892786581---------6503-25554------------4431148489611433431
Q ss_pred ----CC-CCCCCC-CCCCCCCCCCCCEECC-----------CC------CCCCCCCCCCCCCCCCHHHHHCCC-CCCCCE
Q ss_conf ----11-101113-4555422124521113-----------33------444321565433210002321013-331000
Q gi|254780675|r 162 ----PR-HIEGIE-PDSHLIWTYFDALKPS-----------KT------PKSLIVMGSGAIGVEFSSFYKSLD-VDVSLI 217 (481)
Q Consensus 162 ----p~-~~~g~~-~~~~~~~t~~~~l~l~-----------~~------p~~ivIiGgG~ig~E~A~~l~~lG-~~Vtli 217 (481)
T Consensus 243 ~ggLP~eDa~GV~~ALPFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~ 322 (480)
T TIGR01318 243 RGGLPGEDAPGVLKALPFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCA 322 (480)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 28778877421666424776615212378887774467776677423477668985888752578899998177613126
Q ss_pred ECCCCC-CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEE-----C-------------CCCEEEEEC
Q ss_conf 000001-222222212221001220123322100134420223431012440-----3-------------674021102
Q gi|254780675|r 218 EVKDRI-LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVER-----K-------------DGSVSSMQA 278 (481)
Q Consensus 218 ~~~~~l-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~-----~-------------dG~~~~i~~ 278 (481)
T Consensus 323 YRRDE~nMPGS----rrEV~NA-REEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~A 397 (480)
T TIGR01318 323 YRRDEANMPGS----RREVANA-REEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPA 397 (480)
T ss_pred EECCCCCCCCC----HHHHCCC-HHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 65367787877----5552661-111711321003158887788852335652356678677768777104786515146
Q ss_pred CCEEECCCCEEEEECCCCCCCCCCCC-CEEEEEC-------CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 32243057422000023222112357-3266424-------874230258588304445532444123202555543024
Q gi|254780675|r 279 EKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVD-------GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 279 D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd-------~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
T Consensus 398 DvvI~AFGF~P~~~p-WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~~ 476 (480)
T TIGR01318 398 DVVIMAFGFSPHAMP-WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGILD 476 (480)
T ss_pred CEEEEEECCCCCCCC-HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 558971067898864-4451775563463277513455677653356884751677014672200066766899999999
Q ss_pred C
Q ss_conf 6
Q gi|254780675|r 351 K 351 (481)
Q Consensus 351 ~ 351 (481)
T Consensus 477 w 477 (480)
T TIGR01318 477 W 477 (480)
T ss_pred H
T ss_conf 8