HHsearch alignment for GI: 254780675 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.87  E-value=2.3e-06  Score=65.05  Aligned_cols=87  Identities=16%  Similarity=0.305  Sum_probs=66.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf             4443215654332100023210133310000000012-------22--22221222100122012332210013442022
Q gi|254780675|r  188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQK  258 (481)
Q Consensus       188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~  258 (481)
T Consensus       143 g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGr---D  219 (480)
T TIGR01318       143 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGR---D  219 (480)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEC---C
T ss_conf             8278997788602579998751785599974770307601368885110278999999999758927865816503---2


Q ss_pred             CCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf             34310124403674021102322430574
Q gi|254780675|r  259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV  287 (481)
Q Consensus       259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr  287 (481)
T Consensus       220 -----~~l~~-----LLe~YDAVFlGvGT  238 (480)
T TIGR01318       220 -----ISLDD-----LLEDYDAVFLGVGT  238 (480)
T ss_pred             -----CCHHH-----HHHHCCEEEEECCC
T ss_conf             -----55544-----43114848961143