HHsearch alignment for GI: 254780675 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1036.29 Aligned_cols=465 Identities=50% Similarity=0.852 Sum_probs=445.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984-21178213487544999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQN-AQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~ 82 (481)
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~~ 80 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDWE 80 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECHH
T ss_conf 95189987787727999999864980899980356874872776754788776678999998898678033671267589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
T Consensus 81 ~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~-------------~~~~~~k~~iiATGS~P 147 (481)
T TIGR01350 81 KMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEE-------------EETLEAKNIIIATGSRP 147 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCE-------------EEEEEEEEEEEECCCCC
T ss_conf 99999889875424678988630680599999999858589983565531-------------14787403799338603
Q ss_pred CCCCC---CCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCH
Q ss_conf 11011---134555--4221245211133344432156543321000232101333100000000122222221222100
Q gi|254780675|r 163 RHIEG---IEPDSH--LIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQR 237 (481)
Q Consensus 163 ~~~~g---~~~~~~--~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~ 237 (481)
T Consensus 148 ~~lp~~g~~~~~~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~ 227 (481)
T TIGR01350 148 RELPGPGGFDEDGKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKK 227 (481)
T ss_pred CCCCCCCCCCCCCCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 43577786576778878983268743224885669987866778899999853980899945750035431689999999
Q ss_pred HHHHCC-CCCCCCHHHH--HHCCCCCCCCEEEEECC-CCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECC
Q ss_conf 122012-3322100134--42022343101244036-7402110232243057422000023222112357-32664248
Q gi|254780675|r 238 SLQKRG-IKILTESKIS--SVKQKGDMVSVQVERKD-GSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDG 312 (481)
Q Consensus 238 ~l~~~G-v~i~~~~~v~--~v~~~~~~~~v~~~~~d-G~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~ 312 (481)
T Consensus 228 ~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~ 307 (481)
T TIGR01350 228 KLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDE 307 (481)
T ss_pred HHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECC
T ss_conf 99744984985485442335775287899999987998058898739999842434767646021211887898188798
Q ss_pred CCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCC
Q ss_conf 74230258588304445532444123202555543024664----43212232002454303340001496876107972
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSK----VYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLD 388 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~----~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~ 388 (481)
T Consensus 308 ~~~Tnv~~IYAIGDv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~ 387 (481)
T TIGR01350 308 YMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGID 387 (481)
T ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCC
T ss_conf 32516896668873478702689999878999999818761100001255357887784687366303887999855985
Q ss_pred EEEEEEECCCCHHHHCCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 7999996463823320789-821899999889985999999829988999999999987797789963885487789999
Q gi|254780675|r 389 IRVGKHSFSANGKAITLGE-DSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467 (481)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~-~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l 467 (481)
T Consensus 388 ~k~gkfpF~AnGkA~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~ 467 (481)
T TIGR01350 388 VKIGKFPFAANGKALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAI 467 (481)
T ss_pred EEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 89997010104212000567876189999647781888998842443268899998774898899998527898888999
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999870886659
Q gi|254780675|r 468 KESILDAYGRAIHS 481 (481)
Q Consensus 468 ~~a~~~~~~~~~~~ 481 (481)
T Consensus 468 ~EAa~~a~g~~iH~ 481 (481)
T TIGR01350 468 KEAALAALGKPIHM 481 (481)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999981885679