HHsearch alignment for GI: 254780675 and conserved domain: TIGR02731
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=94.02 E-value=0.089 Score=31.70 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC--CC-CEEEEECCCEEECCC
Q ss_conf 133310000000012222222122210012201233221001344202234310124403--67-402110232243057
Q gi|254780675|r 210 LDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK--DG-SVSSMQAEKLLLSAG 286 (481)
Q Consensus 210 lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~--dG-~~~~i~~D~vl~a~G 286 (481)
T Consensus 200 ~Gsk~afldG~P~------erlC~P~v~~~~~~GGe~~~~~~l~~i~l~~d~~v~~f~~~~~~g~~~~~~~~d~y~~a~~ 273 (454)
T TIGR02731 200 YGSKIAFLDGAPP------ERLCQPIVDYITSRGGEVRLNARLKEIVLNEDGSVKAFALADGEGKDSFEVTADAYVSALP 273 (454)
T ss_pred CCCEEEEECCCCH------HHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEHEEEECCCCCCCCEEECCCEEEHHH
T ss_conf 4771676268880------4555789999972488166413100134357762100022044564200111010011112
Q ss_pred CE
Q ss_conf 42
Q gi|254780675|r 287 VQ 288 (481)
Q Consensus 287 r~ 288 (481)
T Consensus 274 vd 275 (454)
T TIGR02731 274 VD 275 (454)
T ss_pred HH
T ss_conf 56