HHsearch alignment for GI: 254780675 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=5e-05 Score=55.29 Aligned_cols=99 Identities=11% Similarity=0.361 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECC--CCCC--------CCC----CCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 444321565433210002321013331000000--0012--------222----22212221001220123322100134
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVK--DRIL--------PVE----DSEISQFVQRSLQKRGIKILTESKIS 253 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 253 (481)
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699
Q ss_pred HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf 4202234310124403674021102322430574220
Q gi|254780675|r 254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGN 290 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn 290 (481)
T Consensus 292 ~i~~~~~~~~v~~--~~g--~~~~aktVIiATGa~~r 324 (515)
T TIGR03140 292 KIETEDGLIVVTL--ESG--EVLKAKSVIVATGARWR 324 (515)
T ss_pred EEECCCCCEEEEE--CCC--CEEEECEEEECCCCCCC
T ss_conf 9972798189998--799--89993979995698735