HHsearch alignment for GI: 254780675 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.00 E-value=2.3e-06 Score=64.98 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCCCHHHHHCC---CCCCCCEECCCCCC-----CC-----C-CCCCCCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf 432156543321000232101---33310000000012-----22-----2-2221222100122012332210013442
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSL---DVDVSLIEVKDRIL-----PV-----E-DSEISQFVQRSLQKRGIKILTESKISSV 255 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~l---G~~Vtli~~~~~ll-----~~-----~-d~~~~~~~~~~l~~~Gv~i~~~~~v~~v 255 (481)
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~V~~I 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEECCHHHHHHHCCCEEEEE-EEEEE
T ss_conf 99999960999999999704178998399999988651625169997404779992216899997779499963-78999
Q ss_pred CCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 02234310124403674021102322430574220000
Q gi|254780675|r 256 KQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 256 ~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
T Consensus 80 D~~~k~--V~~--~~g--~~l~YD~LViAtGs~~~~~~ 111 (364)
T TIGR03169 80 DPDRRK--VLL--ANR--PPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ECCCCE--EEE--CCC--CEEECCEEEEECCCCCCCCC
T ss_conf 768898--998--899--88736889994367778899