HHsearch alignment for GI: 254780675 and conserved domain: TIGR03467
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.23 E-value=1.8e-06 Score=65.72 Aligned_cols=52 Identities=13% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf 2221001220123322100134420223431012440367402110232243057
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
T Consensus 211 ~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~-~~g--~~~~ad~VI~a~p 262 (430)
T TIGR03467 211 PEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIR-AGG--ETLTADAVVLAVP 262 (430)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCC--EEEECCEEEECCC
T ss_conf 999999999649767769836899997998899995-098--7997799998989