Query gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 481
No_of_seqs 194 out of 11220
Neff 7.8
Searched_HMMs 39220
Date Sun May 29 21:46:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780675.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01350 lipoamide_DH dihydro 100.0 0 0 1036.3 32.0 465 4-481 1-481 (481)
2 PRK06416 dihydrolipoamide dehy 100.0 0 0 886.8 35.3 461 2-481 2-462 (462)
3 PRK06115 dihydrolipoamide dehy 100.0 0 0 879.9 35.3 463 3-481 2-466 (466)
4 PRK07818 dihydrolipoamide dehy 100.0 0 0 865.8 36.9 464 1-481 1-467 (467)
5 PRK13748 putative mercuric red 100.0 0 0 868.5 34.5 452 3-477 97-552 (561)
6 PRK06467 dihydrolipoamide dehy 100.0 0 0 862.1 36.6 462 1-480 1-464 (472)
7 PRK05976 dihydrolipoamide dehy 100.0 0 0 863.3 35.7 461 1-481 1-464 (464)
8 COG1249 Lpd Pyruvate/2-oxoglut 100.0 0 0 860.1 33.8 451 1-471 1-454 (454)
9 PTZ00153 lipoamide dehydrogena 100.0 0 0 862.5 31.1 461 2-479 121-672 (673)
10 PRK06327 dihydrolipoamide dehy 100.0 0 0 854.2 36.5 462 1-481 1-475 (475)
11 PRK06912 acoL dihydrolipoamide 100.0 0 0 854.1 35.3 456 6-481 2-458 (458)
12 PRK06370 mercuric reductase; V 100.0 0 0 849.2 36.4 454 2-476 2-457 (459)
13 TIGR02053 MerA mercuric reduct 100.0 0 0 861.0 26.6 457 5-477 1-485 (494)
14 PRK07845 flavoprotein disulfid 100.0 0 0 849.8 33.7 455 4-477 1-463 (467)
15 PRK05249 soluble pyridine nucl 100.0 0 0 845.1 34.2 456 1-477 2-463 (465)
16 PRK06292 dihydrolipoamide dehy 100.0 0 0 837.8 35.0 456 3-481 2-460 (460)
17 PRK07846 mycothione/glutathion 100.0 0 0 827.3 32.6 448 4-474 1-451 (453)
18 TIGR03452 mycothione_red mycot 100.0 0 0 828.4 31.4 446 3-474 1-452 (452)
19 PRK06116 glutathione reductase 100.0 0 0 820.9 33.3 444 1-469 1-448 (450)
20 PTZ00052 thioredoxin reductase 100.0 0 0 820.9 32.2 450 1-469 38-518 (541)
21 PRK08010 pyridine nucleotide-d 100.0 0 0 810.3 32.0 434 1-474 1-440 (441)
22 PRK07251 pyridine nucleotide-d 100.0 0 0 784.7 33.1 430 3-471 2-436 (438)
23 KOG1335 consensus 100.0 0 0 783.3 31.8 462 3-481 38-506 (506)
24 TIGR01421 gluta_reduc_1 glutat 100.0 0 0 770.7 21.1 452 3-469 1-473 (475)
25 TIGR01424 gluta_reduc_2 glutat 100.0 0 0 756.9 26.2 452 3-469 1-476 (478)
26 TIGR01438 TGR thioredoxin and 100.0 0 0 681.3 25.5 455 3-469 1-494 (513)
27 KOG0405 consensus 100.0 0 0 669.5 24.3 449 2-469 18-470 (478)
28 KOG4716 consensus 100.0 0 0 599.7 24.5 451 2-469 17-486 (503)
29 PRK09564 coenzyme A disulfide 100.0 0 0 525.1 21.4 404 7-469 3-434 (443)
30 PRK13512 coenzyme A disulfide 100.0 0 0 488.9 18.9 400 1-468 1-428 (438)
31 TIGR03385 CoA_CoA_reduc CoA-di 100.0 0 0 489.2 18.3 393 18-468 1-421 (427)
32 TIGR01423 trypano_reduc trypan 100.0 0 0 485.3 19.6 450 2-468 1-468 (486)
33 PRK04965 nitric oxide reductas 100.0 0 0 358.2 14.8 355 1-438 1-370 (378)
34 PRK09754 phenylpropionate diox 100.0 2.8E-44 0 340.4 16.9 369 1-456 1-393 (400)
35 TIGR01292 TRX_reduct thioredox 100.0 4.9E-44 0 338.7 13.6 290 5-349 1-318 (321)
36 TIGR03143 AhpF_homolog putativ 100.0 4.6E-43 0 331.6 15.7 288 1-348 1-304 (555)
37 PRK12770 putative glutamate sy 100.0 3.5E-42 0 325.2 11.7 294 5-350 18-345 (350)
38 TIGR03140 AhpF alkyl hydropero 100.0 5.5E-39 1.4E-43 302.0 16.1 290 3-351 211-511 (515)
39 PRK10262 thioredoxin reductase 100.0 1.5E-38 4E-43 298.7 14.8 296 2-350 4-312 (321)
40 pfam07992 Pyr_redox_2 Pyridine 100.0 6E-39 1.5E-43 301.7 9.9 272 6-332 1-277 (277)
41 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-36 2.9E-41 285.2 8.5 363 7-441 1-394 (813)
42 COG0492 TrxB Thioredoxin reduc 100.0 1.6E-34 4.1E-39 269.5 15.7 287 3-350 2-298 (305)
43 COG1252 Ndh NADH dehydrogenase 100.0 2.2E-34 5.7E-39 268.5 9.6 292 6-360 5-342 (405)
44 PRK11749 putative oxidoreducta 100.0 1.1E-33 2.7E-38 263.5 11.8 276 6-350 142-452 (460)
45 PRK09853 putative selenate red 100.0 5.7E-34 1.5E-38 265.5 10.4 275 6-352 552-852 (1032)
46 TIGR01316 gltA glutamate synth 100.0 9.3E-34 2.4E-38 264.0 10.2 278 3-349 141-459 (462)
47 PRK12814 putative NADPH-depend 100.0 3.8E-33 9.7E-38 259.6 11.2 274 6-349 195-497 (652)
48 TIGR03315 Se_ygfK putative sel 100.0 3.1E-33 8E-38 260.2 10.3 275 6-353 539-840 (1012)
49 PRK12831 putative oxidoreducta 100.0 1.6E-32 4.1E-37 255.0 12.6 278 6-350 142-458 (464)
50 TIGR03169 Nterm_to_SelD pyridi 100.0 4.3E-33 1.1E-37 259.1 9.7 283 6-352 1-310 (364)
51 PRK12810 gltD glutamate syntha 100.0 3.2E-32 8E-37 252.9 13.2 280 5-350 144-464 (472)
52 PRK12809 putative oxidoreducta 100.0 1.3E-32 3.4E-37 255.6 10.7 277 6-351 312-633 (639)
53 PRK12769 putative oxidoreducta 100.0 1.9E-32 4.8E-37 254.5 10.9 276 6-350 329-649 (654)
54 COG1251 NirB NAD(P)H-nitrite r 100.0 1.4E-31 3.6E-36 248.1 13.3 373 6-459 5-397 (793)
55 PRK12778 putative bifunctional 100.0 4.4E-32 1.1E-36 251.8 10.0 278 5-350 440-755 (760)
56 PRK12771 putative glutamate sy 100.0 9.8E-32 2.5E-36 249.3 11.3 274 6-349 139-436 (560)
57 PTZ00318 NADH dehydrogenase; P 100.0 2.4E-31 6.2E-36 246.5 10.0 316 6-380 12-380 (514)
58 TIGR01318 gltD_gamma_fam gluta 100.0 1.3E-30 3.3E-35 241.1 11.7 276 7-351 146-477 (480)
59 PRK13984 putative oxidoreducta 100.0 1.2E-30 3.1E-35 241.4 11.1 275 6-350 285-599 (604)
60 PRK12779 putative bifunctional 100.0 1.6E-29 4.1E-34 233.2 13.3 278 6-352 308-626 (944)
61 PRK12775 putative trifunctiona 100.0 6.8E-30 1.7E-34 235.9 11.1 279 6-351 434-751 (993)
62 COG0446 HcaD Uncharacterized N 100.0 2.9E-28 7.3E-33 224.1 12.5 297 148-459 92-412 (415)
63 KOG1336 consensus 100.0 6.2E-29 1.6E-33 228.9 7.1 368 6-455 76-464 (478)
64 pfam02852 Pyr_redox_dim Pyridi 99.9 2E-27 5E-32 218.0 12.0 110 362-471 1-110 (110)
65 TIGR01317 GOGAT_sm_gam glutama 99.9 2E-26 5.2E-31 210.7 11.4 291 5-348 152-505 (517)
66 COG3634 AhpF Alkyl hydroperoxi 99.9 9.9E-27 2.5E-31 212.9 7.5 290 4-350 211-512 (520)
67 KOG2495 consensus 99.9 1.2E-26 3.2E-31 212.2 7.6 295 4-348 55-392 (491)
68 KOG0404 consensus 99.9 4.5E-25 1.1E-29 200.9 7.8 285 5-346 9-312 (322)
69 COG0493 GltD NADPH-dependent g 99.9 2.9E-22 7.3E-27 180.6 8.3 280 5-349 124-447 (457)
70 KOG1346 consensus 99.9 1.6E-22 4E-27 182.5 4.4 406 3-455 177-650 (659)
71 TIGR01372 soxA sarcosine oxida 99.8 4E-19 1E-23 157.7 12.4 303 1-351 173-501 (1026)
72 pfam00743 FMO-like Flavin-bind 99.8 2.1E-18 5.3E-23 152.5 15.6 316 2-353 1-397 (532)
73 KOG0399 consensus 99.8 4.5E-19 1.1E-23 157.4 11.1 280 5-349 1786-2116(2142)
74 COG2072 TrkA Predicted flavopr 99.6 1.1E-14 2.8E-19 125.5 8.4 196 1-223 5-210 (443)
75 COG1148 HdrA Heterodisulfide r 99.5 2.2E-14 5.6E-19 123.3 8.0 196 147-348 297-540 (622)
76 COG3486 IucD Lysine/ornithine 99.5 5.3E-13 1.4E-17 113.2 12.6 330 1-353 2-415 (436)
77 PRK09078 sdhA succinate dehydr 99.5 1.3E-13 3.3E-18 117.7 9.1 38 1-38 9-46 (598)
78 PRK07803 sdhA succinate dehydr 99.5 1.3E-12 3.3E-17 110.4 13.0 37 4-40 8-44 (631)
79 pfam00070 Pyr_redox Pyridine n 99.5 4E-15 1E-19 128.6 0.1 82 190-271 1-82 (82)
80 PRK09077 L-aspartate oxidase; 99.5 8.9E-13 2.3E-17 111.6 11.7 45 3-48 7-53 (535)
81 PRK08275 putative oxidoreducta 99.5 4.9E-13 1.3E-17 113.5 10.3 47 306-352 357-404 (554)
82 KOG1399 consensus 99.4 1.6E-11 4.2E-16 102.4 16.0 303 5-354 7-335 (448)
83 KOG2755 consensus 99.4 8.4E-13 2.1E-17 111.8 8.7 177 146-329 88-321 (334)
84 PRK08641 sdhA succinate dehydr 99.4 1.4E-12 3.6E-17 110.1 9.3 37 1-38 1-37 (589)
85 PRK07395 L-aspartate oxidase; 99.4 2.2E-12 5.7E-17 108.7 10.2 37 1-38 7-43 (556)
86 PRK09231 fumarate reductase fl 99.4 8.4E-12 2.1E-16 104.5 13.1 37 2-38 2-40 (582)
87 PRK08958 sdhA succinate dehydr 99.4 2E-12 5E-17 109.1 9.8 35 3-37 6-40 (588)
88 PTZ00139 succinate dehydrogena 99.4 1.1E-12 2.9E-17 110.9 8.0 39 2-40 32-71 (622)
89 PRK07057 sdhA succinate dehydr 99.4 2.1E-12 5.4E-17 108.8 9.4 36 3-38 11-46 (591)
90 TIGR03378 glycerol3P_GlpB glyc 99.4 4.9E-12 1.3E-16 106.2 10.7 139 208-349 244-419 (419)
91 PRK08071 L-aspartate oxidase; 99.4 4.4E-12 1.1E-16 106.6 10.2 36 1-38 1-36 (510)
92 PRK05329 anaerobic glycerol-3- 99.4 1.5E-11 3.9E-16 102.6 12.8 140 208-350 243-419 (425)
93 KOG3851 consensus 99.4 1.5E-12 3.9E-17 109.9 7.6 216 145-365 128-378 (446)
94 PRK07804 L-aspartate oxidase; 99.4 4.1E-12 1.1E-16 106.7 9.7 38 3-40 14-51 (533)
95 PRK06263 sdhA succinate dehydr 99.4 4E-12 1E-16 106.9 9.5 34 4-38 7-40 (539)
96 PRK13800 putative oxidoreducta 99.4 1.2E-11 3.1E-16 103.3 11.8 48 4-51 13-68 (894)
97 PRK08205 sdhA succinate dehydr 99.4 1.9E-12 4.9E-17 109.2 7.4 37 1-38 1-38 (583)
98 PRK06069 sdhA succinate dehydr 99.4 3.2E-11 8.2E-16 100.3 13.0 35 4-38 5-42 (582)
99 PRK06452 sdhA succinate dehydr 99.3 1.6E-11 4E-16 102.6 10.8 38 1-38 1-39 (566)
100 PRK07512 L-aspartate oxidase; 99.3 4.4E-11 1.1E-15 99.3 13.0 33 4-38 9-41 (507)
101 PRK06854 adenylylsulfate reduc 99.3 5.6E-11 1.4E-15 98.5 12.6 36 4-39 11-48 (610)
102 PRK06175 L-aspartate oxidase; 99.3 2.2E-11 5.7E-16 101.4 10.4 37 1-38 1-37 (433)
103 PRK08626 fumarate reductase fl 99.3 3.9E-11 1E-15 99.7 10.7 38 1-38 1-39 (657)
104 PRK05945 sdhA succinate dehydr 99.3 1.7E-11 4.3E-16 102.3 7.9 35 4-38 3-39 (575)
105 pfam01134 GIDA Glucose inhibit 99.3 5.4E-11 1.4E-15 98.6 9.8 133 6-160 1-150 (391)
106 PRK08401 L-aspartate oxidase; 99.3 4E-11 1E-15 99.6 9.0 34 5-38 2-35 (464)
107 pfam03486 HI0933_like HI0933-l 99.3 2.3E-10 5.9E-15 94.1 12.7 139 5-161 1-163 (405)
108 COG0029 NadB Aspartate oxidase 99.2 1.3E-09 3.3E-14 88.7 16.3 38 1-39 1-41 (518)
109 PRK12842 putative succinate de 99.2 8.4E-11 2.1E-15 97.3 10.1 44 1-44 1-46 (567)
110 PRK07573 sdhA succinate dehydr 99.2 1E-10 2.6E-15 96.6 10.5 34 3-36 32-65 (638)
111 COG2081 Predicted flavoprotein 99.2 2.7E-11 6.8E-16 100.9 5.5 35 3-37 2-36 (408)
112 KOG1800 consensus 99.2 1.1E-09 2.8E-14 89.1 13.5 279 6-351 22-405 (468)
113 PRK06134 putative FAD-binding 99.2 1.6E-10 4.1E-15 95.2 8.5 42 3-44 9-51 (579)
114 PRK12839 hypothetical protein; 99.2 1.7E-10 4.2E-15 95.1 8.3 45 1-45 6-51 (574)
115 PRK07843 3-ketosteroid-delta-1 99.2 1.6E-10 4.1E-15 95.2 8.1 44 1-44 1-46 (560)
116 PRK12843 putative FAD-binding 99.1 3.2E-10 8.2E-15 93.0 7.3 42 3-44 13-55 (576)
117 PRK12844 3-ketosteroid-delta-1 99.1 2.3E-10 6E-15 94.0 6.0 42 3-44 5-47 (552)
118 PRK12835 3-ketosteroid-delta-1 99.1 3.9E-09 1E-13 85.1 12.0 42 3-44 10-52 (584)
119 PRK10015 hypothetical protein; 99.1 1.3E-10 3.2E-15 96.0 4.0 38 1-38 1-39 (429)
120 PRK06481 fumarate reductase fl 99.1 1E-09 2.6E-14 89.4 8.6 43 1-43 57-100 (506)
121 PRK12845 3-ketosteroid-delta-1 99.0 9.6E-10 2.4E-14 89.6 7.1 41 3-44 15-56 (566)
122 PRK07121 hypothetical protein; 99.0 2E-09 5E-14 87.3 8.3 43 2-44 18-61 (491)
123 TIGR02032 GG-red-SF geranylger 99.0 1.2E-09 3.1E-14 88.8 7.0 36 5-40 1-36 (343)
124 PTZ00188 adrenodoxin reductase 99.0 8.1E-09 2.1E-13 82.8 10.7 278 3-349 38-436 (506)
125 PRK12409 D-amino acid dehydrog 99.0 7.8E-09 2E-13 83.0 10.0 77 230-309 198-279 (410)
126 PRK08274 tricarballylate dehyd 98.9 4.5E-09 1.1E-13 84.7 8.0 44 1-44 1-47 (456)
127 pfam01266 DAO FAD dependent ox 98.9 5.8E-09 1.5E-13 83.9 7.9 53 230-287 148-200 (309)
128 PRK06184 hypothetical protein; 98.9 4.1E-09 1E-13 85.0 6.8 37 1-37 1-39 (503)
129 PRK12837 3-ketosteroid-delta-1 98.9 6.8E-09 1.7E-13 83.4 7.4 42 3-45 8-50 (515)
130 TIGR01813 flavo_cyto_c flavocy 98.9 1.8E-08 4.6E-13 80.3 9.4 36 6-41 1-38 (487)
131 pfam00890 FAD_binding_2 FAD bi 98.9 3.8E-08 9.8E-13 77.9 11.1 39 6-44 1-40 (401)
132 COG0644 FixC Dehydrogenases (f 98.9 1.5E-08 3.9E-13 80.9 8.9 38 3-40 2-40 (396)
133 PRK05192 tRNA uridine 5-carbox 98.9 2.6E-08 6.7E-13 79.1 10.0 73 311-392 353-428 (621)
134 PRK11259 solA N-methyltryptoph 98.8 1.1E-08 2.9E-13 81.8 7.5 52 231-287 151-202 (377)
135 PRK06183 mhpA 3-(3-hydroxyphen 98.8 9.2E-09 2.4E-13 82.4 6.8 35 3-37 11-45 (554)
136 PRK06834 hypothetical protein; 98.8 1.3E-08 3.3E-13 81.3 7.4 35 1-36 1-35 (488)
137 PRK10157 putative oxidoreducta 98.8 6.7E-09 1.7E-13 83.4 5.9 38 1-38 1-39 (428)
138 PRK08020 ubiF 2-octaprenyl-3-m 98.8 3.1E-08 7.9E-13 78.6 8.2 76 232-311 115-192 (391)
139 TIGR03364 HpnW_proposed FAD de 98.8 2.8E-07 7.2E-12 71.6 13.0 35 5-39 1-35 (365)
140 TIGR00551 nadB L-aspartate oxi 98.8 1.8E-08 4.6E-13 80.3 6.8 35 4-38 2-37 (546)
141 PRK11728 hypothetical protein; 98.8 2.2E-08 5.6E-13 79.7 7.0 54 231-288 151-204 (400)
142 PRK08132 hypothetical protein; 98.8 3.4E-08 8.6E-13 78.3 7.6 35 3-37 22-56 (549)
143 PRK09126 hypothetical protein; 98.8 3.8E-08 9.6E-13 78.0 7.7 36 1-37 1-36 (392)
144 PRK13369 glycerol-3-phosphate 98.7 7.8E-08 2E-12 75.7 9.0 43 2-44 4-47 (503)
145 COG4529 Uncharacterized protei 98.7 6.1E-07 1.6E-11 69.2 13.2 96 254-349 344-459 (474)
146 COG0579 Predicted dehydrogenas 98.7 1.9E-08 4.9E-13 80.1 5.3 200 3-289 2-211 (429)
147 PRK08850 2-octaprenyl-6-methox 98.7 2.9E-07 7.5E-12 71.5 10.8 36 1-36 1-36 (405)
148 PRK07333 2-octaprenyl-6-methox 98.7 9E-08 2.3E-12 75.2 8.0 77 231-311 113-190 (403)
149 PRK08244 hypothetical protein; 98.7 1.4E-07 3.6E-12 73.8 9.0 34 4-37 2-35 (494)
150 PRK08773 2-octaprenyl-3-methyl 98.7 1E-07 2.6E-12 74.8 8.2 58 232-293 116-173 (392)
151 PRK08163 salicylate hydroxylas 98.7 2.1E-07 5.4E-12 72.5 9.7 37 1-37 1-37 (396)
152 TIGR03329 Phn_aa_oxid putative 98.7 3.5E-07 8.9E-12 71.0 10.4 48 3-50 23-74 (460)
153 COG0654 UbiH 2-polyprenyl-6-me 98.7 9.2E-08 2.3E-12 75.2 7.4 59 231-292 106-165 (387)
154 PRK08294 phenol 2-monooxygenas 98.7 1.1E-07 2.8E-12 74.6 7.5 36 2-37 30-66 (634)
155 PRK06126 hypothetical protein; 98.7 2.4E-07 6E-12 72.2 9.2 37 1-37 2-40 (545)
156 PRK00711 D-amino acid dehydrog 98.6 2.6E-07 6.7E-12 71.9 9.3 70 231-308 203-277 (416)
157 COG0445 GidA Flavin-dependent 98.6 2.6E-07 6.7E-12 71.9 9.0 35 1-35 1-35 (621)
158 PRK06475 salicylate hydroxylas 98.6 1.1E-07 2.7E-12 74.7 6.8 34 4-37 2-35 (400)
159 COG3075 GlpB Anaerobic glycero 98.6 2.1E-08 5.5E-13 79.8 2.9 121 230-352 259-417 (421)
160 COG0578 GlpA Glycerol-3-phosph 98.6 1E-07 2.6E-12 74.8 6.3 94 230-325 165-267 (532)
161 PRK07190 hypothetical protein; 98.6 9.3E-08 2.4E-12 75.1 5.9 37 1-37 1-38 (480)
162 PRK08774 consensus 98.6 7E-08 1.8E-12 76.1 5.1 37 1-37 1-37 (402)
163 PRK04176 ribulose-1,5-biphosph 98.6 7.8E-07 2E-11 68.4 10.4 39 4-42 25-64 (257)
164 PRK05714 2-octaprenyl-3-methyl 98.6 2.9E-07 7.3E-12 71.6 8.1 57 233-293 116-172 (405)
165 COG1233 Phytoene dehydrogenase 98.6 1.4E-07 3.7E-12 73.8 5.8 56 229-287 224-279 (487)
166 PRK11445 putative oxidoreducta 98.5 1.3E-07 3.3E-12 74.1 5.3 49 4-55 1-55 (348)
167 TIGR01317 GOGAT_sm_gam glutama 98.5 1.8E-08 4.5E-13 80.4 0.7 194 188-392 151-381 (517)
168 PRK05732 2-octaprenyl-6-methox 98.5 9.4E-07 2.4E-11 67.8 9.2 56 233-292 116-172 (395)
169 PRK12834 putative FAD-binding 98.5 1.6E-07 4.1E-12 73.4 4.9 42 4-45 2-46 (549)
170 PRK05335 tRNA (uracil-5-)-meth 98.5 4.5E-07 1.2E-11 70.2 7.0 32 4-35 3-34 (434)
171 TIGR01790 carotene-cycl lycope 98.5 6.7E-07 1.7E-11 68.9 7.6 137 6-162 1-148 (419)
172 KOG2415 consensus 98.5 8.4E-08 2.1E-12 75.5 2.5 49 2-50 74-129 (621)
173 PRK12266 glpD glycerol-3-phosp 98.4 3.6E-07 9.1E-12 70.9 5.4 44 1-44 3-47 (503)
174 PRK12769 putative oxidoreducta 98.4 1.2E-07 3.2E-12 74.2 3.0 87 188-287 327-422 (654)
175 PRK06567 putative bifunctional 98.4 3.7E-07 9.4E-12 70.8 5.5 215 4-261 401-690 (1048)
176 PRK06996 hypothetical protein; 98.4 9.8E-07 2.5E-11 67.7 7.5 37 1-37 7-48 (397)
177 TIGR00292 TIGR00292 thiazole b 98.4 2.2E-07 5.5E-12 72.5 4.1 36 5-40 22-60 (283)
178 TIGR02023 BchP-ChlP geranylger 98.4 2.6E-07 6.5E-12 72.0 4.3 43 5-53 1-48 (408)
179 COG2509 Uncharacterized FAD-de 98.4 4.8E-07 1.2E-11 70.0 5.6 36 1-36 15-55 (486)
180 PRK07208 hypothetical protein; 98.4 5.5E-07 1.4E-11 69.5 5.8 56 231-286 214-270 (474)
181 PRK07494 2-octaprenyl-6-methox 98.4 4.8E-07 1.2E-11 70.0 5.4 37 1-37 1-38 (386)
182 KOG0042 consensus 98.4 1.7E-06 4.3E-11 66.0 7.6 40 3-42 66-106 (680)
183 TIGR02485 CobZ_N-term precorri 98.4 2.2E-06 5.7E-11 65.1 7.9 37 5-41 2-41 (467)
184 PRK08849 2-octaprenyl-3-methyl 98.4 6.4E-07 1.6E-11 69.1 5.1 35 1-36 1-35 (384)
185 KOG0029 consensus 98.4 7.7E-07 2E-11 68.5 5.3 38 3-40 14-52 (501)
186 pfam01946 Thi4 Thi4 family. Th 98.3 7.6E-07 1.9E-11 68.5 4.9 38 4-41 17-55 (229)
187 TIGR02352 thiamin_ThiO glycine 98.3 3.3E-06 8.3E-11 63.9 7.7 56 229-288 152-207 (357)
188 PRK06185 hypothetical protein; 98.3 1.1E-06 2.8E-11 67.3 5.3 36 1-36 3-38 (409)
189 PRK08948 consensus 98.3 1.5E-06 3.9E-11 66.3 5.9 56 233-292 113-169 (392)
190 PRK07608 hypothetical protein; 98.3 1.1E-06 2.8E-11 67.4 5.0 35 3-37 4-38 (389)
191 TIGR00031 UDP-GALP_mutase UDP- 98.3 9.9E-07 2.5E-11 67.7 4.8 52 4-55 1-54 (390)
192 PRK07364 2-octaprenyl-6-methox 98.3 1.4E-06 3.5E-11 66.7 5.4 37 1-37 13-50 (413)
193 PRK07045 putative monooxygenas 98.3 1.8E-06 4.5E-11 65.9 5.4 57 235-293 112-169 (388)
194 TIGR01988 Ubi-OHases Ubiquinon 98.3 3.4E-06 8.8E-11 63.7 6.8 76 231-310 125-213 (445)
195 PRK08013 hypothetical protein; 98.3 1.6E-06 4E-11 66.2 5.0 36 1-37 1-36 (400)
196 PRK07233 hypothetical protein; 98.2 1.8E-06 4.5E-11 65.9 5.2 55 229-287 197-251 (430)
197 PRK01747 mnmC 5-methylaminomet 98.2 2.7E-05 7E-10 57.2 11.1 35 5-39 257-292 (660)
198 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.4E-06 3.4E-11 66.7 4.4 37 4-40 30-67 (262)
199 PRK02106 choline dehydrogenase 98.2 1.7E-06 4.3E-11 66.0 4.8 37 1-37 2-39 (555)
200 TIGR03467 HpnE squalene-associ 98.2 1.8E-06 4.7E-11 65.7 5.0 52 232-286 211-262 (430)
201 PRK06847 hypothetical protein; 98.2 3.6E-07 9.1E-12 70.9 0.9 59 231-293 109-167 (375)
202 PRK05675 sdhA succinate dehydr 98.2 6.9E-06 1.8E-10 61.6 7.2 22 17-38 1-22 (570)
203 pfam07992 Pyr_redox_2 Pyridine 98.2 6.2E-07 1.6E-11 69.2 1.6 97 190-292 1-110 (277)
204 PRK11101 glpA sn-glycerol-3-ph 98.2 3.6E-06 9.3E-11 63.6 5.4 40 2-41 3-43 (545)
205 PRK09564 coenzyme A disulfide 98.2 7.8E-07 2E-11 68.5 1.9 31 6-36 151-181 (443)
206 pfam06039 Mqo Malate:quinone o 98.2 8.2E-06 2.1E-10 61.0 7.0 85 232-320 185-276 (489)
207 PRK13512 coenzyme A disulfide 98.1 1.1E-06 2.9E-11 67.3 2.3 32 6-37 150-181 (438)
208 TIGR02734 crtI_fam phytoene de 98.1 3E-06 7.7E-11 64.2 4.3 34 7-40 1-35 (526)
209 COG1053 SdhA Succinate dehydro 98.1 4.5E-06 1.1E-10 62.9 5.1 37 1-37 3-39 (562)
210 PRK12810 gltD glutamate syntha 98.1 4.7E-07 1.2E-11 70.0 -0.1 90 188-290 143-242 (472)
211 pfam03486 HI0933_like HI0933-l 98.1 9.9E-07 2.5E-11 67.7 1.2 82 204-291 82-168 (405)
212 TIGR03385 CoA_CoA_reduc CoA-di 98.1 4.4E-05 1.1E-09 55.7 9.2 96 6-164 139-235 (427)
213 PRK13984 putative oxidoreducta 98.1 5.8E-07 1.5E-11 69.4 -0.5 87 188-287 283-378 (604)
214 COG1231 Monoamine oxidase [Ami 98.0 5.3E-06 1.4E-10 62.4 4.2 42 3-44 6-48 (450)
215 COG0665 DadA Glycine/D-amino a 98.0 1.1E-05 2.7E-10 60.2 5.5 40 1-40 1-40 (387)
216 PRK09897 hypothetical protein; 98.0 0.00017 4.4E-09 51.4 11.6 186 1-209 1-212 (535)
217 PRK12809 putative oxidoreducta 98.0 6.7E-07 1.7E-11 68.9 -0.9 89 189-290 311-409 (639)
218 TIGR03169 Nterm_to_SelD pyridi 98.0 2.3E-06 5.9E-11 65.0 1.8 97 190-293 1-111 (364)
219 PRK11749 putative oxidoreducta 98.0 9.9E-07 2.5E-11 67.7 -0.2 90 188-290 140-239 (460)
220 COG0562 Glf UDP-galactopyranos 98.0 1E-05 2.6E-10 60.3 4.9 44 4-47 1-45 (374)
221 KOG2311 consensus 98.0 2.8E-05 7.1E-10 57.2 7.0 67 312-387 381-448 (679)
222 pfam01494 FAD_binding_3 FAD bi 98.0 1.1E-05 2.8E-10 60.1 5.0 60 233-292 105-165 (349)
223 PRK12771 putative glutamate sy 98.0 1.1E-06 2.7E-11 67.5 -0.5 88 188-288 137-233 (560)
224 TIGR02053 MerA mercuric reduct 98.0 9.4E-06 2.4E-10 60.6 4.2 108 7-170 184-294 (494)
225 pfam00743 FMO-like Flavin-bind 98.0 5.1E-06 1.3E-10 62.5 2.8 103 189-292 2-155 (532)
226 PTZ00306 NADH-dependent fumara 98.0 1.4E-05 3.6E-10 59.3 5.1 38 6-43 411-449 (1167)
227 PRK13748 putative mercuric red 97.9 7.8E-05 2E-09 53.9 8.8 35 186-220 96-130 (561)
228 PRK13339 malate:quinone oxidor 97.9 1.5E-05 3.8E-10 59.2 4.9 99 231-332 186-298 (497)
229 PRK05868 hypothetical protein; 97.9 1.8E-06 4.5E-11 65.9 0.1 59 231-294 107-165 (372)
230 pfam01494 FAD_binding_3 FAD bi 97.9 3.3E-06 8.5E-11 63.9 1.5 34 4-37 1-34 (349)
231 PRK09754 phenylpropionate diox 97.9 4.7E-06 1.2E-10 62.8 2.2 31 6-36 146-176 (400)
232 PRK07045 putative monooxygenas 97.9 4.6E-06 1.2E-10 62.8 1.7 37 1-37 1-38 (388)
233 PRK12814 putative NADPH-depend 97.9 1.3E-06 3.3E-11 66.9 -1.2 88 188-288 193-289 (652)
234 PRK04965 nitric oxide reductas 97.9 1E-04 2.5E-09 53.1 8.5 96 189-291 3-113 (378)
235 TIGR02028 ChlP geranylgeranyl 97.9 4.6E-05 1.2E-09 55.6 6.7 100 7-114 3-114 (401)
236 PRK11883 protoporphyrinogen ox 97.9 2.7E-05 6.9E-10 57.3 5.5 37 6-42 2-41 (452)
237 PRK05976 dihydrolipoamide dehy 97.9 0.00014 3.7E-09 52.0 9.1 31 6-36 177-207 (464)
238 TIGR01318 gltD_gamma_fam gluta 97.9 2.3E-06 5.8E-11 65.0 -0.2 87 188-287 143-238 (480)
239 PRK12831 putative oxidoreducta 97.9 2.5E-06 6.4E-11 64.8 -0.1 92 188-290 140-242 (464)
240 PRK06617 2-octaprenyl-6-methox 97.9 2.5E-05 6.5E-10 57.5 4.9 32 6-37 3-34 (374)
241 PRK06847 hypothetical protein; 97.8 3.2E-05 8.1E-10 56.7 5.3 37 1-37 1-37 (375)
242 TIGR01373 soxB sarcosine oxida 97.8 2E-05 5.2E-10 58.1 4.4 61 3-63 29-94 (407)
243 PRK08773 2-octaprenyl-3-methyl 97.8 6.2E-06 1.6E-10 61.9 1.5 36 1-36 1-38 (392)
244 TIGR02733 desat_CrtD C-3',4' d 97.8 2.4E-05 6.1E-10 57.7 4.3 146 229-385 232-399 (499)
245 PRK07588 hypothetical protein; 97.8 4.3E-06 1.1E-10 63.1 0.5 31 7-37 3-33 (391)
246 TIGR01350 lipoamide_DH dihydro 97.8 0.00019 4.8E-09 51.1 8.8 95 7-164 181-285 (481)
247 PRK07364 2-octaprenyl-6-methox 97.8 1.3E-05 3.3E-10 59.6 2.8 59 234-293 125-184 (413)
248 PRK08243 4-hydroxybenzoate 3-m 97.8 4.4E-05 1.1E-09 55.7 5.4 32 5-36 3-34 (392)
249 COG0493 GltD NADPH-dependent g 97.8 1.8E-05 4.5E-10 58.6 3.3 89 189-290 124-222 (457)
250 PRK07251 pyridine nucleotide-d 97.8 0.00018 4.7E-09 51.2 8.4 31 6-36 159-189 (438)
251 COG2303 BetA Choline dehydroge 97.8 3.6E-05 9.2E-10 56.3 4.7 65 233-297 207-274 (542)
252 COG0446 HcaD Uncharacterized N 97.8 0.00017 4.3E-09 51.5 8.0 36 5-40 137-173 (415)
253 TIGR03315 Se_ygfK putative sel 97.8 7.6E-06 1.9E-10 61.3 1.0 135 189-346 538-687 (1012)
254 PRK08010 pyridine nucleotide-d 97.8 0.00029 7.5E-09 49.7 9.0 32 6-37 160-191 (441)
255 COG1252 Ndh NADH dehydrogenase 97.7 8.3E-06 2.1E-10 61.0 1.0 100 188-294 3-116 (405)
256 PRK09853 putative selenate red 97.7 9E-06 2.3E-10 60.7 1.1 108 189-316 551-668 (1032)
257 PRK07538 hypothetical protein; 97.7 4.5E-05 1.1E-09 55.6 4.6 32 6-37 2-33 (413)
258 PRK06467 dihydrolipoamide dehy 97.7 2.2E-05 5.6E-10 57.9 3.0 31 6-36 176-206 (472)
259 PRK06912 acoL dihydrolipoamide 97.7 0.00022 5.5E-09 50.7 8.0 31 6-36 172-202 (458)
260 PRK06416 dihydrolipoamide dehy 97.7 0.00024 6.2E-09 50.3 8.2 31 6-36 174-204 (462)
261 PRK12778 putative bifunctional 97.7 4.7E-06 1.2E-10 62.7 -0.6 90 189-290 440-539 (760)
262 COG3380 Predicted NAD/FAD-depe 97.7 5.5E-05 1.4E-09 55.0 4.8 35 6-40 3-38 (331)
263 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.0005 1.3E-08 48.1 9.7 31 7-37 176-206 (454)
264 PRK07818 dihydrolipoamide dehy 97.7 0.00024 6.1E-09 50.4 8.1 31 6-36 174-204 (467)
265 PRK06327 dihydrolipoamide dehy 97.7 0.00027 6.9E-09 50.0 8.3 31 6-36 185-215 (475)
266 PRK12770 putative glutamate sy 97.7 7.9E-06 2E-10 61.1 0.4 101 189-291 18-132 (350)
267 PRK07845 flavoprotein disulfid 97.7 0.00045 1.1E-08 48.4 9.1 31 6-36 180-210 (467)
268 PRK05868 hypothetical protein; 97.7 7.6E-05 1.9E-09 54.0 5.1 41 1-44 1-44 (372)
269 PRK07236 hypothetical protein; 97.7 8E-05 2E-09 53.8 5.2 32 5-36 7-38 (386)
270 PRK06185 hypothetical protein; 97.7 1.4E-05 3.7E-10 59.2 1.4 52 241-293 121-173 (409)
271 TIGR01816 sdhA_forward succina 97.7 5.6E-05 1.4E-09 54.9 4.2 34 3-36 1-34 (615)
272 PRK06116 glutathione reductase 97.7 0.00037 9.5E-09 49.0 8.4 31 6-36 169-199 (450)
273 PRK06753 hypothetical protein; 97.7 6.9E-05 1.8E-09 54.3 4.6 31 7-37 3-33 (373)
274 PRK06115 dihydrolipoamide dehy 97.7 0.00025 6.3E-09 50.3 7.4 31 6-36 176-206 (466)
275 KOG2820 consensus 97.7 0.00067 1.7E-08 47.1 9.6 38 1-38 4-41 (399)
276 COG3349 Uncharacterized conser 97.6 8.8E-05 2.2E-09 53.5 5.0 37 7-43 3-40 (485)
277 PRK06370 mercuric reductase; V 97.6 0.00045 1.2E-08 48.4 8.5 32 6-37 172-203 (459)
278 PRK05249 soluble pyridine nucl 97.6 3.1E-05 8E-10 56.8 2.5 31 6-36 178-208 (465)
279 PTZ00052 thioredoxin reductase 97.6 0.00065 1.7E-08 47.2 8.9 31 6-36 224-254 (541)
280 PRK07846 mycothione/glutathion 97.6 0.00092 2.3E-08 46.1 9.5 32 6-37 170-201 (453)
281 PTZ00318 NADH dehydrogenase; P 97.6 2.8E-05 7.1E-10 57.2 1.6 103 189-292 11-134 (514)
282 KOG2404 consensus 97.6 0.00021 5.3E-09 50.8 5.9 38 6-43 11-49 (477)
283 PRK01747 mnmC 5-methylaminomet 97.6 4.8E-05 1.2E-09 55.5 2.6 37 187-223 255-291 (660)
284 pfam05834 Lycopene_cycl Lycope 97.6 0.00013 3.3E-09 52.3 4.8 38 6-43 1-43 (374)
285 PRK06753 hypothetical protein; 97.6 1.7E-05 4.3E-10 58.7 0.3 56 232-293 101-156 (373)
286 PRK07588 hypothetical protein; 97.5 0.00013 3.4E-09 52.2 4.8 59 231-294 105-163 (391)
287 PRK10262 thioredoxin reductase 97.5 2.7E-05 6.9E-10 57.2 1.1 96 189-290 7-118 (321)
288 PRK05257 malate:quinone oxidor 97.5 0.00034 8.6E-09 49.3 6.5 85 232-320 190-281 (499)
289 COG1232 HemY Protoporphyrinoge 97.5 0.00016 4.1E-09 51.6 4.8 35 7-41 3-40 (444)
290 TIGR01316 gltA glutamate synth 97.5 1.9E-05 4.7E-10 58.4 -0.1 91 189-290 143-243 (462)
291 TIGR01377 soxA_mon sarcosine o 97.5 0.00013 3.3E-09 52.3 4.2 82 214-303 135-220 (401)
292 TIGR03143 AhpF_homolog putativ 97.5 3.5E-05 8.9E-10 56.4 1.1 31 6-36 145-175 (555)
293 PRK12775 putative trifunctiona 97.5 2.2E-05 5.5E-10 57.9 -0.2 91 189-290 433-533 (993)
294 PRK06292 dihydrolipoamide dehy 97.5 0.0015 3.9E-08 44.6 9.2 32 6-37 171-202 (460)
295 PRK12416 protoporphyrinogen ox 97.4 0.00028 7.1E-09 49.9 5.2 37 1-40 1-44 (466)
296 TIGR03452 mycothione_red mycot 97.4 0.0012 3.2E-08 45.2 8.5 32 6-37 171-202 (452)
297 TIGR03140 AhpF alkyl hydropero 97.4 5E-05 1.3E-09 55.3 1.3 99 188-290 212-324 (515)
298 PRK07494 2-octaprenyl-6-methox 97.4 9.5E-05 2.4E-09 53.3 2.5 58 231-292 111-168 (386)
299 PRK05732 2-octaprenyl-6-methox 97.4 8.4E-05 2.1E-09 53.7 2.2 35 1-36 1-38 (395)
300 KOG1399 consensus 97.4 9.1E-05 2.3E-09 53.4 2.3 106 188-293 6-159 (448)
301 PRK08243 4-hydroxybenzoate 3-m 97.4 7.4E-05 1.9E-09 54.1 1.8 57 235-292 109-166 (392)
302 KOG4254 consensus 97.4 0.00032 8.1E-09 49.5 4.9 48 3-50 13-61 (561)
303 PRK07236 hypothetical protein; 97.4 6.4E-05 1.6E-09 54.5 1.2 47 243-293 112-158 (386)
304 PRK08774 consensus 97.3 0.00016 4.1E-09 51.6 3.1 76 235-311 115-193 (402)
305 TIGR03219 salicylate_mono sali 97.3 0.00035 8.9E-09 49.2 4.8 32 6-37 2-34 (414)
306 COG3573 Predicted oxidoreducta 97.3 0.00042 1.1E-08 48.6 5.2 41 4-44 5-48 (552)
307 PRK07538 hypothetical protein; 97.3 7.4E-05 1.9E-09 54.1 1.3 49 244-292 119-168 (413)
308 PRK12779 putative bifunctional 97.3 3.3E-05 8.5E-10 56.6 -0.6 90 189-290 307-406 (944)
309 PRK07608 hypothetical protein; 97.3 9.1E-05 2.3E-09 53.4 1.3 57 232-292 115-171 (389)
310 PRK08013 hypothetical protein; 97.2 0.00022 5.7E-09 50.6 2.6 57 233-293 115-172 (400)
311 PTZ00153 lipoamide dehydrogena 97.2 0.0033 8.5E-08 42.1 8.6 47 274-326 279-328 (673)
312 COG2072 TrkA Predicted flavopr 97.2 0.00024 6.2E-09 50.3 2.7 103 189-293 9-150 (443)
313 TIGR02730 carot_isom carotene 97.2 0.00041 1E-08 48.7 3.8 36 5-40 1-37 (506)
314 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.00054 1.4E-08 47.8 4.4 31 6-36 1-34 (636)
315 TIGR02374 nitri_red_nirB nitri 97.1 0.0033 8.4E-08 42.1 8.1 114 8-178 151-271 (813)
316 pfam00996 GDI GDP dissociation 97.1 0.00096 2.5E-08 46.0 5.1 42 1-42 1-43 (439)
317 KOG0685 consensus 97.1 0.00088 2.2E-08 46.3 4.8 35 6-40 23-59 (498)
318 TIGR01292 TRX_reduct thioredox 97.1 0.00019 4.9E-09 51.1 1.3 221 190-431 2-293 (321)
319 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.00072 1.8E-08 46.9 4.2 33 6-38 1-38 (425)
320 KOG1298 consensus 97.1 0.00088 2.2E-08 46.3 4.5 34 3-36 44-77 (509)
321 pfam01593 Amino_oxidase Flavin 97.1 5.6E-05 1.4E-09 55.0 -1.6 52 232-287 207-258 (444)
322 TIGR01989 COQ6 Ubiquinone bios 97.0 0.00078 2E-08 46.6 4.1 31 5-35 1-35 (481)
323 PRK13977 myosin-cross-reactive 97.0 0.00096 2.4E-08 46.0 4.5 60 229-288 226-292 (577)
324 KOG0399 consensus 97.0 0.00015 3.8E-09 51.8 0.3 87 189-288 1786-1881(2142)
325 PRK08849 2-octaprenyl-3-methyl 97.0 0.00027 6.8E-09 50.0 1.4 54 235-292 116-170 (384)
326 KOG2844 consensus 97.0 0.004 1E-07 41.5 7.3 43 5-47 40-85 (856)
327 PRK06481 fumarate reductase fl 97.0 0.00038 9.8E-09 48.9 1.9 50 304-353 440-503 (506)
328 PRK08850 2-octaprenyl-6-methox 96.9 0.00058 1.5E-08 47.6 2.7 54 235-292 117-171 (405)
329 TIGR02360 pbenz_hydroxyl 4-hyd 96.9 0.0016 4.1E-08 44.3 4.8 35 1-37 1-35 (393)
330 pfam01134 GIDA Glucose inhibit 96.9 0.00037 9.5E-09 49.0 1.2 41 311-352 346-387 (391)
331 COG0492 TrxB Thioredoxin reduc 96.9 0.00044 1.1E-08 48.5 1.6 96 189-290 4-116 (305)
332 COG0644 FixC Dehydrogenases (f 96.8 0.00031 7.9E-09 49.6 0.5 37 316-352 266-307 (396)
333 KOG1336 consensus 96.8 0.0079 2E-07 39.3 7.7 96 189-291 75-183 (478)
334 TIGR03219 salicylate_mono sali 96.8 0.00032 8.1E-09 49.5 0.5 54 234-293 110-163 (414)
335 pfam04820 Trp_halogenase Trypt 96.8 0.002 5E-08 43.7 4.4 79 230-315 158-239 (457)
336 COG1148 HdrA Heterodisulfide r 96.8 0.00049 1.3E-08 48.1 1.3 36 6-41 126-162 (622)
337 PTZ00306 NADH-dependent fumara 96.8 0.00092 2.4E-08 46.1 2.5 42 305-349 833-899 (1167)
338 PRK08255 salicylyl-CoA 5-hydro 96.6 0.0036 9.3E-08 41.8 4.5 45 7-52 3-49 (770)
339 KOG1238 consensus 96.6 0.0033 8.3E-08 42.1 4.2 35 2-36 55-90 (623)
340 KOG2853 consensus 96.5 0.0034 8.7E-08 42.0 4.1 43 3-45 85-141 (509)
341 TIGR02061 aprA adenylylsulfate 96.5 0.0029 7.5E-08 42.5 3.6 33 6-38 1-37 (651)
342 PRK09897 hypothetical protein; 96.4 0.0018 4.7E-08 43.9 2.0 45 243-290 123-168 (535)
343 KOG2614 consensus 96.4 0.0071 1.8E-07 39.7 4.9 41 6-46 4-47 (420)
344 PRK10157 putative oxidoreducta 96.3 0.00073 1.9E-08 46.9 -0.2 44 241-288 120-163 (428)
345 pfam06100 Strep_67kDa_ant Stre 96.3 0.0045 1.2E-07 41.1 3.9 37 6-42 4-45 (500)
346 KOG2495 consensus 96.3 0.0025 6.3E-08 43.0 2.2 105 189-294 56-175 (491)
347 KOG1276 consensus 96.3 0.0069 1.8E-07 39.8 4.5 36 5-40 12-50 (491)
348 pfam00070 Pyr_redox Pyridine n 96.2 0.0079 2E-07 39.3 4.5 30 7-36 2-31 (82)
349 TIGR01789 lycopene_cycl lycope 96.1 0.0079 2E-07 39.3 4.1 43 6-48 1-48 (392)
350 KOG1335 consensus 96.1 0.019 4.8E-07 36.6 5.9 34 7-40 214-248 (506)
351 TIGR02023 BchP-ChlP geranylger 96.0 0.005 1.3E-07 40.8 2.6 34 316-349 277-315 (408)
352 COG2907 Predicted NAD/FAD-bind 95.9 0.0076 1.9E-07 39.5 3.3 35 5-40 9-44 (447)
353 COG3380 Predicted NAD/FAD-depe 95.9 0.0056 1.4E-07 40.4 2.6 40 243-285 117-156 (331)
354 PRK11101 glpA sn-glycerol-3-ph 95.9 0.0038 9.6E-08 41.7 1.8 47 240-286 159-207 (545)
355 PRK10015 hypothetical protein; 95.9 0.0018 4.5E-08 44.1 0.0 33 317-349 293-332 (429)
356 PRK08294 phenol 2-monooxygenas 95.9 0.0029 7.3E-08 42.5 1.1 28 146-173 194-223 (634)
357 KOG3855 consensus 95.9 0.0093 2.4E-07 38.8 3.7 34 3-36 35-72 (481)
358 PRK11445 putative oxidoreducta 95.9 0.0038 9.8E-08 41.6 1.7 42 244-286 113-154 (348)
359 pfam00890 FAD_binding_2 FAD bi 95.9 0.0045 1.1E-07 41.1 1.9 35 304-340 356-396 (401)
360 KOG2665 consensus 95.8 0.0075 1.9E-07 39.5 3.0 179 235-423 202-422 (453)
361 TIGR00692 tdh L-threonine 3-de 95.8 0.025 6.3E-07 35.7 5.5 68 149-221 118-196 (341)
362 COG0654 UbiH 2-polyprenyl-6-me 95.8 0.0034 8.8E-08 42.0 1.1 34 3-36 1-34 (387)
363 PRK06617 2-octaprenyl-6-methox 95.8 0.0034 8.6E-08 42.0 1.1 55 233-292 108-163 (374)
364 PRK12921 2-dehydropantoate 2-r 95.7 0.0034 8.7E-08 42.0 0.9 30 7-36 3-32 (306)
365 PRK06475 salicylate hydroxylas 95.7 0.0031 7.9E-08 42.3 0.5 62 231-293 109-171 (400)
366 PRK06184 hypothetical protein; 95.7 0.0031 7.8E-08 42.3 0.5 26 145-170 154-181 (503)
367 PRK06522 2-dehydropantoate 2-r 95.7 0.0037 9.4E-08 41.8 0.9 30 7-36 3-32 (307)
368 COG1206 Gid NAD(FAD)-utilizing 95.7 0.031 7.8E-07 35.1 5.5 35 6-40 5-39 (439)
369 TIGR01790 carotene-cycl lycope 95.6 0.0057 1.4E-07 40.4 1.7 55 230-289 92-148 (419)
370 PRK12409 D-amino acid dehydrog 95.6 0.003 7.5E-08 42.4 0.3 35 1-38 1-35 (410)
371 TIGR00137 gid gid protein; Int 95.6 0.0077 2E-07 39.4 2.3 60 6-67 2-74 (444)
372 PRK07208 hypothetical protein; 95.6 0.0032 8.3E-08 42.2 0.4 40 4-43 3-43 (474)
373 PRK08163 salicylate hydroxylas 95.6 0.0036 9.1E-08 41.9 0.6 58 232-293 112-170 (396)
374 KOG1298 consensus 95.6 0.015 3.9E-07 37.3 3.7 29 191-219 48-76 (509)
375 PRK08229 2-dehydropantoate 2-r 95.6 0.0043 1.1E-07 41.2 0.9 33 1-36 2-34 (341)
376 TIGR02360 pbenz_hydroxyl 4-hyd 95.6 0.0098 2.5E-07 38.7 2.8 58 230-288 104-165 (393)
377 PRK06249 2-dehydropantoate 2-r 95.6 0.0051 1.3E-07 40.7 1.3 33 4-36 5-37 (313)
378 KOG0029 consensus 95.5 0.0042 1.1E-07 41.3 0.7 39 243-285 228-267 (501)
379 PRK06126 hypothetical protein; 95.5 0.0038 9.7E-08 41.6 0.4 35 317-351 301-336 (545)
380 TIGR00137 gid gid protein; Int 95.5 0.02 5E-07 36.5 4.0 71 281-352 283-373 (444)
381 TIGR00745 apbA_panE 2-dehydrop 95.4 0.0064 1.6E-07 40.0 1.4 30 7-36 2-33 (332)
382 TIGR01176 fum_red_Fp fumarate 95.4 0.021 5.3E-07 36.3 4.0 34 3-36 2-37 (585)
383 PRK07233 hypothetical protein; 95.4 0.0041 1.1E-07 41.4 0.4 36 7-42 2-38 (430)
384 PRK11883 protoporphyrinogen ox 95.4 0.0043 1.1E-07 41.2 0.4 44 240-287 230-273 (452)
385 TIGR01424 gluta_reduc_2 glutat 95.4 0.043 1.1E-06 34.0 5.5 96 6-163 187-286 (478)
386 PRK08132 hypothetical protein; 95.4 0.0047 1.2E-07 41.0 0.5 29 144-172 167-197 (549)
387 pfam01262 AlaDh_PNT_C Alanine 95.3 0.033 8.4E-07 34.8 4.7 31 6-36 22-52 (150)
388 PRK08244 hypothetical protein; 95.3 0.0051 1.3E-07 40.7 0.5 28 144-171 141-170 (494)
389 PRK06834 hypothetical protein; 95.2 0.0055 1.4E-07 40.5 0.6 33 318-350 264-297 (488)
390 pfam02558 ApbA Ketopantoate re 95.2 0.0077 2E-07 39.4 1.3 30 7-36 1-30 (150)
391 PRK05192 tRNA uridine 5-carbox 95.2 0.0049 1.3E-07 40.8 0.2 39 1-39 3-43 (621)
392 PRK00711 D-amino acid dehydrog 95.2 0.0048 1.2E-07 40.9 0.1 31 7-37 3-33 (416)
393 KOG2614 consensus 95.1 0.009 2.3E-07 38.9 1.4 31 320-350 289-324 (420)
394 PRK06183 mhpA 3-(3-hydroxyphen 95.1 0.0062 1.6E-07 40.1 0.5 18 146-163 160-177 (554)
395 PTZ00188 adrenodoxin reductase 95.0 0.0051 1.3E-07 40.7 -0.2 38 185-222 36-74 (506)
396 PRK07190 hypothetical protein; 95.0 0.0085 2.2E-07 39.1 0.9 17 146-162 149-165 (480)
397 COG1251 NirB NAD(P)H-nitrite r 94.9 0.018 4.5E-07 36.8 2.5 29 7-35 148-176 (793)
398 PRK05714 2-octaprenyl-3-methyl 94.9 0.008 2E-07 39.3 0.6 34 4-37 2-35 (405)
399 KOG2960 consensus 94.9 0.0066 1.7E-07 39.9 0.2 36 5-40 77-115 (328)
400 COG0445 GidA Flavin-dependent 94.9 0.02 5.1E-07 36.4 2.6 84 295-388 327-420 (621)
401 COG0686 Ald Alanine dehydrogen 94.8 0.0074 1.9E-07 39.6 0.3 43 187-229 167-209 (371)
402 TIGR01810 betA choline dehydro 94.8 0.023 5.8E-07 36.0 2.8 175 231-416 201-401 (540)
403 PRK05335 tRNA (uracil-5-)-meth 94.8 0.0085 2.2E-07 39.1 0.4 57 295-352 299-365 (434)
404 KOG1439 consensus 94.7 0.015 3.7E-07 37.4 1.6 42 1-42 1-43 (440)
405 PRK08020 ubiF 2-octaprenyl-3-m 94.7 0.0097 2.5E-07 38.7 0.6 37 1-37 1-38 (391)
406 TIGR02732 zeta_caro_desat caro 94.7 0.053 1.3E-06 33.3 4.4 34 7-40 2-36 (474)
407 PRK08275 putative oxidoreducta 94.6 0.015 3.8E-07 37.4 1.4 35 4-38 9-45 (554)
408 COG2509 Uncharacterized FAD-de 94.6 0.021 5.3E-07 36.3 2.0 45 306-350 437-481 (486)
409 KOG3851 consensus 94.6 0.026 6.6E-07 35.6 2.5 35 2-36 37-73 (446)
410 COG0569 TrkA K+ transport syst 94.5 0.065 1.7E-06 32.7 4.5 32 6-37 2-33 (225)
411 TIGR03467 HpnE squalene-associ 94.5 0.011 2.8E-07 38.3 0.5 36 7-42 1-37 (430)
412 PRK06452 sdhA succinate dehydr 94.5 0.02 5E-07 36.5 1.8 49 304-352 345-403 (566)
413 PRK07333 2-octaprenyl-6-methox 94.5 0.011 2.8E-07 38.3 0.4 33 4-36 1-35 (403)
414 TIGR01320 mal_quin_oxido malat 94.5 0.018 4.5E-07 36.8 1.5 96 232-333 181-293 (487)
415 COG1893 ApbA Ketopantoate redu 94.4 0.017 4.4E-07 36.9 1.3 30 7-36 3-32 (307)
416 PRK09126 hypothetical protein; 94.3 0.011 2.8E-07 38.3 0.2 57 233-293 114-171 (392)
417 PRK06175 L-aspartate oxidase; 94.3 0.023 5.8E-07 36.0 1.8 48 304-351 330-386 (433)
418 PRK09496 trkA potassium transp 94.3 0.079 2E-06 32.1 4.5 31 7-37 3-33 (455)
419 TIGR02853 spore_dpaA dipicolin 94.2 0.096 2.5E-06 31.4 4.8 91 188-290 152-245 (288)
420 PRK01438 murD UDP-N-acetylmura 94.1 0.015 3.8E-07 37.3 0.5 30 7-36 17-46 (481)
421 KOG4405 consensus 94.1 0.064 1.6E-06 32.8 3.7 39 3-41 7-46 (547)
422 TIGR02731 phytoene_desat phyto 94.0 0.089 2.3E-06 31.7 4.3 73 210-288 200-275 (454)
423 TIGR01369 CPSaseII_lrg carbamo 94.0 0.019 4.9E-07 36.5 0.9 28 7-34 9-47 (1089)
424 PRK09424 pntA NAD(P) transhydr 93.8 0.09 2.3E-06 31.7 4.0 36 187-222 164-199 (510)
425 PRK12416 protoporphyrinogen ox 93.7 0.018 4.6E-07 36.7 0.4 37 246-286 241-277 (466)
426 KOG4716 consensus 93.7 0.057 1.5E-06 33.1 2.9 34 261-294 145-178 (503)
427 COG0686 Ald Alanine dehydrogen 93.6 0.076 1.9E-06 32.2 3.3 29 371-399 323-355 (371)
428 pfam01266 DAO FAD dependent ox 93.6 0.019 4.7E-07 36.6 0.2 35 6-40 1-35 (309)
429 PRK02472 murD UDP-N-acetylmura 93.5 0.022 5.6E-07 36.1 0.5 31 7-37 12-42 (450)
430 TIGR02733 desat_CrtD C-3',4' d 93.5 0.024 6.1E-07 35.9 0.7 35 6-40 3-38 (499)
431 PRK08958 sdhA succinate dehydr 93.5 0.049 1.3E-06 33.6 2.3 37 314-350 376-421 (588)
432 PRK00094 gpsA NAD(P)H-dependen 93.5 0.4 1E-05 27.0 6.9 33 1-36 1-33 (325)
433 TIGR02734 crtI_fam phytoene de 93.5 0.024 6.1E-07 35.8 0.6 168 192-377 195-390 (526)
434 TIGR00136 gidA glucose-inhibit 93.4 0.072 1.8E-06 32.4 3.0 31 5-35 1-31 (630)
435 COG5044 MRS6 RAB proteins gera 93.4 0.17 4.4E-06 29.6 4.9 42 1-42 1-45 (434)
436 PRK02006 murD UDP-N-acetylmura 93.4 0.19 4.9E-06 29.3 5.1 30 7-36 10-39 (501)
437 PRK07121 hypothetical protein; 93.4 0.047 1.2E-06 33.7 2.0 49 304-352 428-490 (491)
438 COG1233 Phytoene dehydrogenase 93.3 0.024 6.1E-07 35.9 0.4 40 3-42 2-42 (487)
439 TIGR01811 sdhA_Bsu succinate d 93.3 0.093 2.4E-06 31.6 3.4 27 7-33 1-27 (620)
440 PRK00141 murD UDP-N-acetylmura 93.2 0.035 8.9E-07 34.7 1.1 31 7-37 20-50 (476)
441 PRK11259 solA N-methyltryptoph 93.2 0.022 5.7E-07 36.1 0.1 38 2-39 1-38 (377)
442 COG3349 Uncharacterized conser 93.1 0.028 7.1E-07 35.4 0.5 21 235-255 221-241 (485)
443 PTZ00139 succinate dehydrogena 92.9 0.061 1.6E-06 32.9 2.0 48 305-352 384-450 (622)
444 pfam01946 Thi4 Thi4 family. Th 92.9 0.042 1.1E-06 34.1 1.1 59 189-247 18-84 (229)
445 PRK07660 consensus 92.9 0.015 3.7E-07 37.4 -1.2 31 6-36 5-35 (283)
446 TIGR01438 TGR thioredoxin and 92.8 0.094 2.4E-06 31.5 2.8 30 7-36 191-220 (513)
447 TIGR03026 NDP-sugDHase nucleot 92.8 0.029 7.4E-07 35.2 0.2 31 7-37 3-33 (411)
448 PRK03803 murD UDP-N-acetylmura 92.8 0.2 5.2E-06 29.1 4.5 36 1-36 1-39 (448)
449 PRK11064 wecC UDP-N-acetyl-D-m 92.7 0.054 1.4E-06 33.3 1.4 36 1-37 1-36 (415)
450 PRK05808 3-hydroxybutyryl-CoA 92.7 0.016 4.1E-07 37.1 -1.2 31 6-36 5-35 (282)
451 pfam03721 UDPG_MGDP_dh_N UDP-g 92.7 0.24 6.1E-06 28.6 4.7 30 7-36 3-32 (185)
452 PRK09260 3-hydroxybutyryl-CoA 92.7 0.018 4.6E-07 36.8 -1.0 34 1-36 1-34 (289)
453 PRK00141 murD UDP-N-acetylmura 92.6 0.23 5.9E-06 28.7 4.7 21 421-441 382-402 (476)
454 TIGR03364 HpnW_proposed FAD de 92.6 0.029 7.5E-07 35.2 0.0 46 233-287 149-195 (365)
455 PRK07804 L-aspartate oxidase; 92.5 0.079 2E-06 32.1 2.1 49 304-352 347-404 (533)
456 PRK08229 2-dehydropantoate 2-r 92.5 0.25 6.3E-06 28.5 4.6 31 190-220 4-34 (341)
457 PRK09117 consensus 92.5 0.018 4.6E-07 36.7 -1.2 30 7-36 5-34 (282)
458 pfam01262 AlaDh_PNT_C Alanine 92.4 0.024 6E-07 35.9 -0.6 39 187-225 19-57 (150)
459 PRK05708 2-dehydropantoate 2-r 92.4 0.28 7E-06 28.1 4.8 34 1-36 1-34 (305)
460 PRK01438 murD UDP-N-acetylmura 92.4 0.23 6E-06 28.6 4.4 19 422-440 392-410 (481)
461 TIGR03366 HpnZ_proposed putati 92.3 0.24 6.1E-06 28.6 4.4 34 188-221 121-155 (280)
462 PRK11064 wecC UDP-N-acetyl-D-m 92.3 0.34 8.7E-06 27.4 5.2 13 28-40 4-16 (415)
463 TIGR00031 UDP-GALP_mutase UDP- 92.3 0.045 1.1E-06 33.9 0.7 76 207-292 124-205 (390)
464 PRK02472 murD UDP-N-acetylmura 92.3 0.25 6.4E-06 28.4 4.5 42 423-474 371-412 (450)
465 PRK11728 hypothetical protein; 92.3 0.038 9.6E-07 34.4 0.3 36 4-39 2-40 (400)
466 PRK07819 3-hydroxybutyryl-CoA 92.3 0.02 5E-07 36.4 -1.2 30 7-36 5-34 (284)
467 pfam05834 Lycopene_cycl Lycope 92.2 0.049 1.2E-06 33.6 0.7 23 446-468 337-359 (374)
468 TIGR02061 aprA adenylylsulfate 92.1 0.054 1.4E-06 33.3 0.9 35 316-350 440-476 (651)
469 TIGR02352 thiamin_ThiO glycine 92.1 0.043 1.1E-06 34.0 0.4 34 7-40 1-35 (357)
470 COG2081 Predicted flavoprotein 92.1 0.044 1.1E-06 33.9 0.4 46 305-351 350-406 (408)
471 PRK08293 3-hydroxybutyryl-CoA 92.1 0.022 5.6E-07 36.1 -1.2 31 6-36 5-35 (288)
472 pfam02737 3HCDH_N 3-hydroxyacy 92.0 0.022 5.7E-07 36.1 -1.2 30 7-36 2-31 (180)
473 TIGR03201 dearomat_had 6-hydro 91.9 0.34 8.8E-06 27.4 4.8 34 188-221 167-200 (349)
474 PRK07573 sdhA succinate dehydr 91.9 0.096 2.4E-06 31.5 1.9 33 304-339 403-435 (638)
475 pfam02254 TrkA_N TrkA-N domain 91.8 0.26 6.6E-06 28.3 4.1 29 7-36 1-29 (115)
476 TIGR02356 adenyl_thiF thiazole 91.8 0.21 5.5E-06 28.9 3.6 32 7-38 24-56 (210)
477 COG0029 NadB Aspartate oxidase 91.8 0.16 4E-06 29.9 3.0 49 304-352 340-397 (518)
478 PRK07803 sdhA succinate dehydr 91.8 0.1 2.6E-06 31.3 1.9 47 305-351 391-446 (631)
479 COG0665 DadA Glycine/D-amino a 91.7 0.047 1.2E-06 33.7 0.2 33 318-353 336-369 (387)
480 PRK08948 consensus 91.5 0.057 1.4E-06 33.1 0.4 32 5-36 1-35 (392)
481 pfam03721 UDPG_MGDP_dh_N UDP-g 91.4 0.04 1E-06 34.2 -0.4 33 190-222 2-34 (185)
482 PRK09260 3-hydroxybutyryl-CoA 91.4 0.43 1.1E-05 26.7 4.9 36 189-224 3-38 (289)
483 PRK12844 3-ketosteroid-delta-1 91.4 0.078 2E-06 32.1 1.1 49 304-352 486-549 (552)
484 COG1004 Ugd Predicted UDP-gluc 91.2 0.11 2.9E-06 30.9 1.8 31 6-36 2-32 (414)
485 pfam00670 AdoHcyase_NAD S-aden 91.2 0.3 7.6E-06 27.9 3.9 31 7-37 26-56 (162)
486 PRK00421 murC UDP-N-acetylmura 91.2 0.061 1.6E-06 32.9 0.4 31 6-36 10-41 (459)
487 PRK06996 hypothetical protein; 91.2 0.071 1.8E-06 32.4 0.7 83 230-313 116-199 (397)
488 COG3634 AhpF Alkyl hydroperoxi 91.2 0.16 4.1E-06 29.8 2.5 100 187-288 210-324 (520)
489 PRK08255 salicylyl-CoA 5-hydro 91.2 0.047 1.2E-06 33.7 -0.2 23 431-453 640-662 (770)
490 PRK01390 murD UDP-N-acetylmura 91.2 0.4 1E-05 26.9 4.5 30 7-36 12-41 (457)
491 TIGR03451 mycoS_dep_FDH mycoth 91.1 0.39 9.9E-06 27.0 4.4 35 188-222 177-212 (358)
492 PRK00683 murD UDP-N-acetylmura 91.1 0.37 9.3E-06 27.2 4.3 30 7-36 6-35 (418)
493 TIGR01988 Ubi-OHases Ubiquinon 91.0 0.062 1.6E-06 32.8 0.3 32 6-37 1-37 (445)
494 PRK09231 fumarate reductase fl 91.0 0.13 3.3E-06 30.5 1.9 49 304-352 357-414 (582)
495 cd01078 NAD_bind_H4MPT_DH NADP 91.0 0.46 1.2E-05 26.5 4.7 30 7-36 31-61 (194)
496 TIGR03026 NDP-sugDHase nucleot 91.0 0.49 1.3E-05 26.3 4.8 13 28-40 1-13 (411)
497 PRK03806 murD UDP-N-acetylmura 91.0 0.45 1.1E-05 26.6 4.6 30 7-36 9-38 (438)
498 pfam01210 NAD_Gly3P_dh_N NAD-d 91.0 0.49 1.2E-05 26.3 4.8 31 7-37 3-33 (159)
499 PRK08277 D-mannonate oxidoredu 90.9 1.2 3E-05 23.5 8.7 36 1-36 2-43 (278)
500 COG1232 HemY Protoporphyrinoge 90.9 0.067 1.7E-06 32.6 0.3 48 232-286 218-265 (444)
No 1
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1036.29 Aligned_cols=465 Identities=50% Similarity=0.852 Sum_probs=445.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984-21178213487544999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQN-AQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~ 82 (481)
.||+|||||||+||-||++||++|+||+||||+.|||||||+||||||+|++.|++++.+++ +..||+.+.+++.+||+
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~~ 80 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDWE 80 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECHH
T ss_conf 95189987787727999999864980899980356874872776754788776678999998898678033671267589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
++++|++.++++++.++..++++++|++++|+|+|.++++|.|....... ..+++++++||||||+|
T Consensus 81 ~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~-------------~~~~~~k~~iiATGS~P 147 (481)
T TIGR01350 81 KMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEE-------------EETLEAKNIIIATGSRP 147 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCE-------------EEEEEEEEEEEECCCCC
T ss_conf 99999889875424678988630680599999999858589983565531-------------14787403799338603
Q ss_pred CCCCC---CCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCH
Q ss_conf 11011---134555--4221245211133344432156543321000232101333100000000122222221222100
Q gi|254780675|r 163 RHIEG---IEPDSH--LIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQR 237 (481)
Q Consensus 163 ~~~~g---~~~~~~--~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~ 237 (481)
+.||+ ++.+.+ .++||+++|+|++.|+|++|||||+||+|||++|++||++||+||..||+||.+|+|+++.+++
T Consensus 148 ~~lp~~g~~~~~~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~ 227 (481)
T TIGR01350 148 RELPGPGGFDEDGKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKK 227 (481)
T ss_pred CCCCCCCCCCCCCCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 43577786576778878983268743224885669987866778899999853980899945750035431689999999
Q ss_pred HHHHCC-CCCCCCHHHH--HHCCCCCCCCEEEEECC-CCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECC
Q ss_conf 122012-3322100134--42022343101244036-7402110232243057422000023222112357-32664248
Q gi|254780675|r 238 SLQKRG-IKILTESKIS--SVKQKGDMVSVQVERKD-GSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDG 312 (481)
Q Consensus 238 ~l~~~G-v~i~~~~~v~--~v~~~~~~~~v~~~~~d-G~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~ 312 (481)
.|++.| |+|++++.|+ .++++++.+.+.++..+ |+.+++++|+||+|+||+||+++||||++||++| ||.|.||+
T Consensus 228 ~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~ 307 (481)
T TIGR01350 228 KLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDE 307 (481)
T ss_pred HHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECC
T ss_conf 99744984985485442335775287899999987998058898739999842434767646021211887898188798
Q ss_pred CCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCC
Q ss_conf 74230258588304445532444123202555543024664----43212232002454303340001496876107972
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSK----VYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLD 388 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~----~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~ 388 (481)
+||||+|||||+|||++++||||+|.+||.+||+||+|+.+ ..++||..||++|||+||+|+|||||+|||++|++
T Consensus 308 ~~~Tnv~~IYAIGDv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~ 387 (481)
T TIGR01350 308 YMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGID 387 (481)
T ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCC
T ss_conf 32516896668873478702689999878999999818761100001255357887784687366303887999855985
Q ss_pred EEEEEEECCCCHHHHCCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 7999996463823320789-821899999889985999999829988999999999987797789963885487789999
Q gi|254780675|r 389 IRVGKHSFSANGKAITLGE-DSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467 (481)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~-~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l 467 (481)
|+++++||+.++||+++++ ++||+|+|+|+++++|||+|++||+|+|||+.+++||.+++|+++|..++|||||+||++
T Consensus 388 ~k~gkfpF~AnGkA~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~ 467 (481)
T TIGR01350 388 VKIGKFPFAANGKALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAI 467 (481)
T ss_pred EEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 89997010104212000567876189999647781888998842443268899998774898899998527898888999
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999870886659
Q gi|254780675|r 468 KESILDAYGRAIHS 481 (481)
Q Consensus 468 ~~a~~~~~~~~~~~ 481 (481)
.||++.++++|||.
T Consensus 468 ~EAa~~a~g~~iH~ 481 (481)
T TIGR01350 468 KEAALAALGKPIHM 481 (481)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999981885679
No 2
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=886.80 Aligned_cols=461 Identities=51% Similarity=0.812 Sum_probs=439.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 86434899989857999999999879939999788886246325673708899999999999842117821348754499
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI 81 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (481)
+.+|||+|||+||||++||+++++.|+||+|||++.+||||+|+||||||+|+++++..+.+++...||+... ...+||
T Consensus 2 ~~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~-~~~~d~ 80 (462)
T PRK06416 2 AFDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERYREARHSEDFGIKAE-NVGFDF 80 (462)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCH
T ss_conf 8779989999888999999999968993999967997862041670506999999999999987762681267-764089
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 99999999999985344687630141421000001122221002368752001355554322586389972455257543
Q gi|254780675|r 82 EDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR 161 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~ 161 (481)
.+++++++..+++++..++.++++.+|++++|+|+|.+++++.|...+ ++.+++++++||||||+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~~---------------~~~~~~a~~iIIATGs~ 145 (462)
T PRK06416 81 KKVQEWKNGVVARLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVKGED---------------GEQTYTAKNIILATGSR 145 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECC---------------CCEEEEECEEEECCCCC
T ss_conf 999999999999987889999987797899838998127604555369---------------96699948699998998
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11101113455542212452111333444321565433210002321013331000000001222222212221001220
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQK 241 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 241 (481)
|+.||+++.++..++||+++++++++|++++|||||+||+|+|++|+++|++|||+++++++||.+|+++++.+++.|++
T Consensus 146 P~~~pg~~~~~~~v~ts~~~~~l~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 225 (462)
T PRK06416 146 PRELPGIEFDGKRVITSDEALNLDEVPKSLVVIGGGYIGIEFASAYASLGAEVTIIEALPRILPGFDKEISKLAERALKK 225 (462)
T ss_pred CCCCCCCCCCCCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 87799978789559841664576547976999889787889999999739768997405432334574666899999996
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEECCCC
Q ss_conf 12332210013442022343101244036740211023224305742200002322211235732664248742302585
Q gi|254780675|r 242 RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPGI 321 (481)
Q Consensus 242 ~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs~p~I 321 (481)
.||++++++.+++++++++++.+.+.. +|+.+++++|.||+|+||+||++.|+|+++||++++|+|.||++||||+|||
T Consensus 226 ~gi~i~~~~~v~~i~~~~~~~~v~~~~-~~~~~~i~~d~vl~a~Gr~Pn~~~L~L~~~gv~~d~G~I~vd~~~~Ts~~~I 304 (462)
T PRK06416 226 RGIKIVTGAMAKKVEQTDDGVTVTLEA-GGEEETIEADYVLVAVGRRPNTENLGLEELGVKTDRGFIPVDEQMRTNVPNI 304 (462)
T ss_pred CCCCEECCCEEEEEEECCCEEEEEEEC-CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCE
T ss_conf 498514484699999729989999953-9858999632999996640164434743025552579700566632599745
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHH
Q ss_conf 88304445532444123202555543024664432122320024543033400014968761079727999996463823
Q gi|254780675|r 322 YAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGK 401 (481)
Q Consensus 322 yA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~ 401 (481)
||+|||+|+++|+|+|.+||++|++||++.. .++||..+|++|||+||+|+||+||+||+++|++|++.+++|+.++|
T Consensus 305 yA~GDv~g~~~l~~~A~~eg~~a~~ni~g~~--~~~~~~~iP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~r 382 (462)
T PRK06416 305 YAIGDVVGGPMLAHKASAEGKIAAEAIAGHP--HPVDYRSIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVRFPFAGNGK 382 (462)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHH
T ss_conf 8714667887765899999999999875999--54444457120025763698758899999759977999998886735
Q ss_pred HHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32078982189999988998599999982998899999999998779778996388548778999999999870886659
Q gi|254780675|r 402 AITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIHS 481 (481)
Q Consensus 402 ~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~~~~~ 481 (481)
++++++++||+|+++|+++++|||+|++||+|+||||.+++||++++|+++|.+++|+|||++|++++|++++.+||||+
T Consensus 383 a~~~~~~~G~~Klv~d~~~~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~g~~~h~ 462 (462)
T PRK06416 383 ALALGETDGFVKLIFDKKTGELLGAHMVGAEASELIQEAQLAINLEATVEDLALTIHPHPTLSEALMEAALAAAGRPLHA 462 (462)
T ss_pred HHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 66569985799999999989799999988999999999999998849899994178779888999999999864998889
No 3
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=879.87 Aligned_cols=463 Identities=39% Similarity=0.678 Sum_probs=433.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 64348999898579999999998799399997-88886246325673708899999999999842117821348754499
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE-YAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI 81 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE-k~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (481)
++|||+|||+||||++||++|+++|+||+||| ++.+||||+|+||||||+|++++++++..+.....+..+...+.+||
T Consensus 2 ~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPsK~Ll~~a~~~~~~~~~~~~~~g~~~~~~~d~ 81 (466)
T PRK06115 2 KSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCH
T ss_conf 84698999978899999999997899399996799964652045756699999999999986344020387573462589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 99999999999985344687630141421000001122221002368752001355554322586389972455257543
Q gi|254780675|r 82 EDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR 161 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~ 161 (481)
++++++++..++.++++++.++++.+|++++|+|+|.++++|.|...++ ++.+++++++||||||+
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g--------------~~~~i~a~~iiIATGs~ 147 (466)
T PRK06115 82 AQMMKQKDESVTALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDG--------------SETQLEAKDIVIATGSE 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCC--------------CEEEEEEEEEEECCCCC
T ss_conf 9999999999999999999998618947995259995499418985899--------------77999956899998998
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11101113455542212452111333444321565433210002321013331000000001222222212221001220
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQK 241 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 241 (481)
|+.+|+++.++..++||+++++++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+++.|++
T Consensus 148 P~~~pg~~~d~~~~~ts~~~~~l~~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~lL~~~D~~~~~~l~~~l~~ 227 (466)
T PRK06115 148 PTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDGETAKTLQKALAK 227 (466)
T ss_pred CCCCCCCCCCCCEEECCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 76999756599569715240035448967999958589999999998619847899833421434341236888889987
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEECCC
Q ss_conf 123322100134420223431012440-3674021102322430574220000232221123573266424874230258
Q gi|254780675|r 242 RGIKILTESKISSVKQKGDMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPG 320 (481)
Q Consensus 242 ~Gv~i~~~~~v~~v~~~~~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs~p~ 320 (481)
.||++++++++++++..++++.+.++. .+|+.+++++|.||+|+||+||++.|+|+++||++++++++||++||||+||
T Consensus 228 ~gi~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gv~~~~~gi~vd~~~~Ts~~~ 307 (466)
T PRK06115 228 QGMRFKLGSKVTQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQGLGLESVGLETDKRGMLANEHHRTSVPG 307 (466)
T ss_pred CCCEEEECCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69499958989999984996999999755885048971699994167657765672002872179977837765447887
Q ss_pred CEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCH
Q ss_conf 58830444553244412320255554302466443212232002454303340001496876107972799999646382
Q gi|254780675|r 321 IYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANG 400 (481)
Q Consensus 321 IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~ 400 (481)
|||+|||+|+++|+|+|.+||+++++||++++ .++||..+|++|||+||+|+||+||+||+++|++|++.+++|+.++
T Consensus 308 IyA~GDv~g~~~l~h~A~~eg~~~~~~i~g~~--~~~~~~~vP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ 385 (466)
T PRK06115 308 VWVIGDVTSGPMLAHKAEDEAVACIERIAGKA--HEVNYNLIPGVIYTRPEVASVGKTEEQLKAEGRAYKVGKFPFTANS 385 (466)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCH
T ss_conf 79842378986770589999999999975999--7656687888997568679888989999876998899999877674
Q ss_pred HHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 33207898218999998899859999998299889999999999877977899638854877899999999987088665
Q gi|254780675|r 401 KAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH 480 (481)
Q Consensus 401 ~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~~~~ 480 (481)
|++.+++++||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||++++|++++.||+||
T Consensus 386 ra~~~~~~~G~vKlv~d~~~g~ILGa~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~i~~aa~~~~g~~~h 465 (466)
T PRK06115 386 RAKINHETEGFAKVLADARTDEVLGVHLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVDGMAMQ 465 (466)
T ss_pred HHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 56546998379999999997979999998999999999999999887979999526778987799999999854598665
Q ss_pred C
Q ss_conf 9
Q gi|254780675|r 481 S 481 (481)
Q Consensus 481 ~ 481 (481)
-
T Consensus 466 ~ 466 (466)
T PRK06115 466 I 466 (466)
T ss_pred C
T ss_conf 9
No 4
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=865.81 Aligned_cols=464 Identities=43% Similarity=0.716 Sum_probs=434.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCC
Q ss_conf 986434899989857999999999879939999788886246325673708899999999999-8421178213487544
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHI-QNAQHYGLNVAGKVEF 79 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~g~~~~~~~~~ 79 (481)
|+++|||+|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|++.+++.+.+ +....+|+. ..+.+
T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~gi~--~~~~~ 78 (467)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTF 78 (467)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCC
T ss_conf 9856878999978899999999997899099994899687506176011399999999999999788867977--42416
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999999853446876301414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
||..++++.+..++++..+++.++++.+|++++|+|+|+++++|.|...++ +..+++++++|||||
T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~~--------------~~~~i~a~~iiIATG 144 (467)
T PRK07818 79 DYGAAFDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDG--------------GTETVTFDNAIIATG 144 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCEEEEECCCC--------------CEEEEEEEEEEECCC
T ss_conf 899999999999999875699999867939994307982485138971789--------------627999526898768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 43111011134555422124521113334443215654332100023210133310000000012222222122210012
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l 239 (481)
|+|+.+|+++.++ .++++++.+.++++|++++|||||++|+|||++|++||++||++++++++||.+|+++++.+++.|
T Consensus 145 s~p~~lPg~~~~~-~~~~~~~~~~~~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l 223 (467)
T PRK07818 145 SSTRLLPGTSLSE-NVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQY 223 (467)
T ss_pred CCCCCCCCCCCCC-CEEEEHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8766578867888-778535772334589669999987999999999983298777762113135442267899999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCEEEEEC-CCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEE
Q ss_conf 201233221001344202234310124403-67402110232243057422000023222112357-3266424874230
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVSVQVERK-DGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTN 317 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~-dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs 317 (481)
++.||+++++++++++++++++..+++... +|+.+++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||
T Consensus 224 ~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~~L~L~~~gv~~~~~G~I~vd~~~~Ts 303 (467)
T PRK07818 224 KKLGVKILTGTKVESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVEGYGLEKTGVALTDRGAIGIDDYMRTN 303 (467)
T ss_pred HHCCCEEECCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCC
T ss_conf 86698885597689999849939999998889946999952589811675044434641355478799858689988647
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+|+++|+|+|.+||++|++||++.......||..+|++|||+||+|+||+||+||+++|+++++.+++|+
T Consensus 304 ~~~IyA~GDv~g~~~Lah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~~~~~~~~~~~ 383 (467)
T PRK07818 304 VPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFT 383 (467)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECC
T ss_conf 87399972268887871489999999999865999863345566654997578769973899999864998899998567
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 38233207898218999998899859999998299889999999999877977899638854877899999999987088
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGR 477 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~ 477 (481)
.++|++..++++||+|+++|+++++|||+|++||+|+||||.+++||++++|+++|.+++|+|||+||++++|++++.++
T Consensus 384 ~~~ra~~~~~~~G~vKlv~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A~~~~~g~ 463 (467)
T PRK07818 384 ANGKAHGLGDPSGFVKLVADAKYGELLGGHLVGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALQEAFHGLAGH 463 (467)
T ss_pred CCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 47777756898579999999998969999998899999999999999883989999406778988799999999975178
Q ss_pred CCCC
Q ss_conf 6659
Q gi|254780675|r 478 AIHS 481 (481)
Q Consensus 478 ~~~~ 481 (481)
+||-
T Consensus 464 ~~~~ 467 (467)
T PRK07818 464 MINF 467 (467)
T ss_pred CCCC
T ss_conf 8789
No 5
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=0 Score=868.51 Aligned_cols=452 Identities=26% Similarity=0.452 Sum_probs=412.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCH
Q ss_conf 64348999898579999999998799399997888862463256737088999999999998421-17821348754499
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQ-HYGLNVAGKVEFNI 81 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~g~~~~~~~~~~~ 81 (481)
..|||+|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|+++|++.+..++.. .+|+... .+.+||
T Consensus 97 ~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~~~~Gi~~~-~~~vd~ 175 (561)
T PRK13748 97 GPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-APTIDR 175 (561)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCEECH
T ss_conf 9876899895889999999999789979999479968866567604489999999999999745014771167-754679
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999985344-6876301-414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 82 EDIVKRSRDISHRLNRG-VEFLMHK-NKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
..++++++..+++++.. ++.++.+ .+|++++|+|+|.++++|.|...++ ++.+++++++|||||
T Consensus 176 ~~~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~~~tv~V~~~dg--------------~~~~i~a~~iIIATG 241 (561)
T PRK13748 176 SKLLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKDDQTLIVRLNDG--------------GERVVAFDRCLIATG 241 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEECCC--------------CEEEEEECEEEECCC
T ss_conf 999999999999987446889974379849998499995398899993589--------------648994186999478
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 43111011134555422124521113334443215654332100023210133310000000012222222122210012
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l 239 (481)
|+|+.||....+...+|||+++|+++++|+|++|||||+||+|||++|++||++||+++| +++|+.+|+++++.+.+.|
T Consensus 242 S~P~~P~ipGl~~~~~lTSd~~l~l~~lP~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r-~~ll~~~D~ei~~~l~~~l 320 (561)
T PRK13748 242 ASPAVPPIPGLKETPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR-STLFFREDPAIGEAVTAAF 320 (561)
T ss_pred CCCCCCCCCCCCCCCEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHHHHHHHHHHH
T ss_conf 876678888767786277456407443887389989868999999999864984899965-7656764999999999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEEC
Q ss_conf 20123322100134420223431012440367402110232243057422000023222112357-32664248742302
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNV 318 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~ 318 (481)
+++||++++++++++++..++.+.++ ..+| ++++|.||+|+||+||+++|+||++||+++ +|+|.||++||||+
T Consensus 321 ~~~GI~i~~~~~v~~v~~~~~~~~v~--~~~g---~i~~d~vLvA~GR~PNt~~LgLe~~GV~~d~~G~I~Vd~~~rTs~ 395 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHDDGEFVLT--TNHG---ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSV 395 (561)
T ss_pred HHCCCEEECCCEEEEEEECCCEEEEE--ECCC---EEEECEEEEECCCEEECCCCCHHHCCCEECCCCCEECCCCCCCCC
T ss_conf 97697997697899999729989999--6896---698578999606103454425154287146899872488743078
Q ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCC
Q ss_conf 58588304445532444123202555543024664432122320024543033400014968761079727999996463
Q gi|254780675|r 319 PGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSA 398 (481)
Q Consensus 319 p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~ 398 (481)
|||||+|||+|+++|+|+|.+||++|+.|+++... ++||..+|++|||+||+|+||+||+||+++|+++++.+++|+.
T Consensus 396 p~IYA~GDv~g~~~Lah~A~~eG~~aa~ni~g~~~--~~d~~~vP~vvFT~PeiA~VGlTE~eA~~~g~~~~~~~~~~~~ 473 (561)
T PRK13748 396 PHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDA--ALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDN 473 (561)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCC
T ss_conf 62999610167875568999999999998619995--4547867749981375077888899998759955899995676
Q ss_pred CHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8233207898218999998899859999998299889999999999877977899638854877899999999987088
Q gi|254780675|r 399 NGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGR 477 (481)
Q Consensus 399 ~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~ 477 (481)
++|++++++++||+|+++|+++++|||+|++||+|+||||.+++||++++|+++|.+++|+|||++|+|++|+....+.
T Consensus 474 ~~rA~~~~~~~GfvKlv~d~~tg~ILGahivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~hPT~sE~lk~AAq~f~kd 552 (561)
T PRK13748 474 VPRALANFDTRGFIKLVAEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKD 552 (561)
T ss_pred CCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 8268766898579999999998959999998799899999999999878989999328877988799999999986068
No 6
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=862.15 Aligned_cols=462 Identities=33% Similarity=0.581 Sum_probs=439.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978-88862463256737088999999999998421178213487544
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEF 79 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (481)
|+.+|||+||||||||++||++++++|++|+|||+ +.+||||+|+||||||+|+++++.++..++...+|+... .+.+
T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~Gi~~~-~~~~ 79 (472)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKI 79 (472)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEECC-CCCC
T ss_conf 997787899998889999999999789969999637997656123580322999999999999867674577258-8742
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999999853446876301414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
||++++++++.++.+++.+++.+++..+|+++.|+++|.+++++.|...++. ..+++++++|||||
T Consensus 80 d~~~~~~~~~~~v~~l~~~~~~~~~~~gV~~i~G~a~f~~~~~v~v~~~~g~--------------~~~l~a~~ivIATG 145 (472)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTVEVTGEDGK--------------TEVIEFDNAIIAAG 145 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCEEEEECCCCC--------------EEEEEEEEEEECCC
T ss_conf 7999999999999999889999998779569715067548980364338886--------------48998779999469
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 43111011134555422124521113334443215654332100023210133310000000012222222122210012
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l 239 (481)
|+|..+|.++.+...++||+++++++++|++++|||||+||+|+|++|++||++||++++++++||.+|+++++.+++.|
T Consensus 146 s~p~~~p~~~~~~~~~~ts~~~l~l~~~P~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~~~~~l 225 (472)
T PRK06467 146 SRPIQLPFIPHEDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRI 225 (472)
T ss_pred CCCCCCCCCCCCCCEEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 96656899887887588236651101399559999564728999999985298689996045545434999999999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEEC
Q ss_conf 20123322100134420223431012440367402110232243057422000023222112357-32664248742302
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNV 318 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~ 318 (481)
++. +++++++.+++++.++++..+++...++..+++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||+
T Consensus 226 ~~~-i~i~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~D~vlva~Gr~Pn~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~ 304 (472)
T PRK06467 226 SKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNV 304 (472)
T ss_pred HHC-CCEEECCEEEEEEEECCEEEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 857-8099644799999939969999980898706998368999078610123457755687317999872499753588
Q ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCC
Q ss_conf 58588304445532444123202555543024664432122320024543033400014968761079727999996463
Q gi|254780675|r 319 PGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSA 398 (481)
Q Consensus 319 p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~ 398 (481)
|||||+|||+|+++|+|+|.+||++|++||++.. .++||..+|+++||+||+|+||+||+||+++|++|++.+++|+.
T Consensus 305 p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~g~~--~~~~~~~vP~~vft~Peia~VGlte~~a~~~g~~~~~~~~~~~~ 382 (472)
T PRK06467 305 PHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK--HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAA 382 (472)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCC
T ss_conf 6358611246887766799999999999866999--65566654159981553588638899998769988999997875
Q ss_pred CHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 82332078982189999988998599999982998899999999998779778996388548778999999999870886
Q gi|254780675|r 399 NGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRA 478 (481)
Q Consensus 399 ~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~~ 478 (481)
++|+++.++++||+|+++|+++++|||+|++||+|+||||.+++||++++|+++|++++|+|||+||++++|++.+.+++
T Consensus 383 ~~ra~~~~~~~G~~Kli~~~~~~~iLGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~i~~Aa~~~~g~~ 462 (472)
T PRK06467 383 SGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAVEGSI 462 (472)
T ss_pred CCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 60454379985799999999989799999988999999999999998869899994078779888999999999866994
Q ss_pred CC
Q ss_conf 65
Q gi|254780675|r 479 IH 480 (481)
Q Consensus 479 ~~ 480 (481)
+|
T Consensus 463 ~~ 464 (472)
T PRK06467 463 TD 464 (472)
T ss_pred CC
T ss_conf 33
No 7
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=863.32 Aligned_cols=461 Identities=38% Similarity=0.687 Sum_probs=430.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCCC
Q ss_conf 986434899989857999999999879939999788886246325673708899999999999842---11782134875
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNA---QHYGLNVAGKV 77 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~---~~~g~~~~~~~ 77 (481)
|+++|||+|||+||||++||++|+++|++|+|||++.+||||+|+||||||+|++.++.++..++. ..+|+... .+
T Consensus 1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~~~gi~~~-~~ 79 (464)
T PRK05976 1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALIHSAEVFHTAKKFAGASPLGISVQ-AP 79 (464)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECC-CC
T ss_conf 99718899999788999999999978992999978997971363683147999999999999865211100535456-76
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 44999999999999998534468763014142100000112222100236875200135555432258638997245525
Q gi|254780675|r 78 EFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIA 157 (481)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIA 157 (481)
.+||.+++++++..+++++..++.++++.+|++++|+++|.++++|.|...++. ..+++|+++|||
T Consensus 80 ~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~g~--------------~~~i~a~~iIIA 145 (464)
T PRK05976 80 ALDFAKVQAWKDGIVDRLTKGVAALLKKGKVDVFHGIGRILDGKTVSVETATGE--------------NEMIIPENLLIA 145 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCC--------------CEEEEECEEEEC
T ss_conf 538999999999999998788999998689289972688658981144427887--------------369982669987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCH
Q ss_conf 75431110111345554221245211133344432156543321000232101333100000000122222221222100
Q gi|254780675|r 158 TGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQR 237 (481)
Q Consensus 158 TGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~ 237 (481)
|||+|+.+|+++.+++ ++||+++++++++|++++|||||++|+|+|++|++||++||++++++++||.+|+++++.+++
T Consensus 146 TGs~P~~lp~~~~~~~-~~ts~~~~~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~ 224 (464)
T PRK05976 146 TGSRPVELPGLPFGGE-VISSTEALSLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVAR 224 (464)
T ss_pred CCCCCCCCCCCCCCCC-EECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 6888616997657766-782046317354895599989968999999999953986999985365543338889999999
Q ss_pred HHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 12201233221001344202234310124403674021102322430574220000232221123573266424874230
Q gi|254780675|r 238 SLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTN 317 (481)
Q Consensus 238 ~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs 317 (481)
.|++.||++++++++++++.+++...+ ...+|+.+++++|.||+|+||+||++.|+|+++||++++|+|.||++||||
T Consensus 225 ~l~~~gi~i~~~~~v~~~~~~~~~~~~--~~~~g~~~~i~~D~vl~a~Gr~Pn~~~l~l~~~gv~~~~g~I~Vd~~~~Ts 302 (464)
T PRK05976 225 LLKKLGVRVLTGAKVLGLTLDGGVLIV--AEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDLDVEGGFIRIDDFCQTS 302 (464)
T ss_pred HHHHCCCEEEECCEEEEEEECCCEEEE--EECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCEEECCCCEECCCCCCCC
T ss_conf 999769799808889999943998999--982897799983689991487556355773227766217836246765358
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+|.++|+|+|.+||++|++|+++.... + ++..+|+++||+||+|+||+||+||+++|++|++.+++|+
T Consensus 303 ~~~IyA~GDv~g~~~l~~~A~~~g~~a~~~~~g~~~~-~-~~~~ip~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~ 380 (464)
T PRK05976 303 MRHIYAIGDVIGEPMLAHRAMAQGEMVAEHIAGKKRE-P-IDYAIVAVCFTDPEVVSVGLTPDEAKEAGYDVKVGKFPFA 380 (464)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC-C-CCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEEECC
T ss_conf 8719996056898777328999999999986599974-3-3455660302375368864889999876998899999767
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 38233207898218999998899859999998299889999999999877977899638854877899999999987088
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGR 477 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~ 477 (481)
+++|+++.++++||+||++|+++++|||+|++||+|+||||.+++||++++|+++|++++|+|||++|++++|++.+++|
T Consensus 381 ~~~ra~~~~~~~G~iKli~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~~~~~ 460 (464)
T PRK05976 381 ANGRALTYGESDGFVRVVARRDTHDILGVQAVGPHVSELISEFALALEMGARLEDVAGTIHAHPTLSEAVGEAALAALGH 460 (464)
T ss_pred CCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 67111015898389999999998989999998999999999999999879989999217777987899999999985599
Q ss_pred CCCC
Q ss_conf 6659
Q gi|254780675|r 478 AIHS 481 (481)
Q Consensus 478 ~~~~ 481 (481)
|+|-
T Consensus 461 ~~h~ 464 (464)
T PRK05976 461 ALHI 464 (464)
T ss_pred CCCC
T ss_conf 8779
No 8
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=0 Score=860.05 Aligned_cols=451 Identities=46% Similarity=0.766 Sum_probs=423.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 986434899989857999999999879939999788-8862463256737088999999999998421-17821348754
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQ-HYGLNVAGKVE 78 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~g~~~~~~~~ 78 (481)
|+.+||++|||+||||+.||++|++.|++|+|||+. .+||||+|+||||||+|++++++++.+++.. .||+..... .
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~ 79 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-K 79 (454)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCC-C
T ss_conf 985154899897777999999999679977999306986765574673144999999999999864142365205778-5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 49999999999999985344687630141421000001122221002368752001355554322586389972455257
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIAT 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIAT 158 (481)
+||++++++++..++++..+++.++++++|++++|+|+|.++++|.|... ...+++++++||||
T Consensus 80 ~d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~----------------~~~~~~a~~iiIAT 143 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE----------------DKETITADNIIIAT 143 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECC----------------CCEEEEECEEEEEC
T ss_conf 38999999999999987677999997489889998999888998999068----------------75499827899906
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 54311101113455542212452111333444321565433210002321013331000000001222222212221001
Q gi|254780675|r 159 GARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238 (481)
Q Consensus 159 Gs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 238 (481)
||+|+.||+++.++..+++|++++.+.++|+|++|||||+||+|||++|++||++|||+++++++||.+|+++++.+.+.
T Consensus 144 GS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~ 223 (454)
T COG1249 144 GSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQ 223 (454)
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99877899889888748835341360107987999898889999999999869978999468877887799999999999
Q ss_pred HHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCC-EEEEECCCCEEE
Q ss_conf 2201233221001344202234310124403674021102322430574220000232221123573-266424874230
Q gi|254780675|r 239 LQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSN-GCIIVDGYGRTN 317 (481)
Q Consensus 239 l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~-g~i~vd~~~qTs 317 (481)
|++.|+++++++.+++++++++++.+.++ +|+..++++|.+|+|+||+||+++|+||++||++++ |+|.||+++|||
T Consensus 224 l~~~gv~i~~~~~v~~~~~~~~~v~v~~~--~g~~~~~~ad~vL~AiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tn 301 (454)
T COG1249 224 LEKGGVKILLNTKVTAVEKKDDGVLVTLE--DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTN 301 (454)
T ss_pred HHHCCEEEECCCEEEEEEECCCEEEEEEE--CCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCEECCCCCEEECCCCCCC
T ss_conf 98589599835369999816980899994--6977679984999932786688887805329146799988768950438
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+++++|+|+|.+||++|++||++ .+..+.||..||++|||+||+|+||+||+||+++|++|++.+++|.
T Consensus 302 vp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g-~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~ 380 (454)
T COG1249 302 VPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG-GKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFA 380 (454)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCC
T ss_conf 999898451589977567899989999999707-9977677467996996779759960899999863897599994357
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 38233207898218999998899859999998299889999999999877977899638854877899999999
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESI 471 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~ 471 (481)
.++|++++++++||+|+++|+++++|||+|++||+|+||||.+++||+++++++++.+++|+|||+||.+++|+
T Consensus 381 ~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 381 ANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred CCHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 63377764687727999997899919999998999899999999999879918998357767998469899659
No 9
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=862.51 Aligned_cols=461 Identities=30% Similarity=0.524 Sum_probs=410.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC---CCCCC---
Q ss_conf 86434899989857999999999879939999--78888624632567370889999999999984211---78213---
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIV--EYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQH---YGLNV--- 73 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~li--Ek~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~---~g~~~--- 73 (481)
.++|||+|||+||+|+.||++|+++|+||+|| |++.+|||||||||||||+|+++|+.++.+++..+ ||+..
T Consensus 121 ~~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~ 200 (673)
T PTZ00153 121 AEEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAF 200 (673)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 43579899998762899999999849869999368787477242777321199998735799886145565337511323
Q ss_pred ---------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-------EEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------4875449999999999999985344687630141-------421000001122221002368752
Q gi|254780675|r 74 ---------------AGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNK-------VDIIWGKATLKNPSEITVSKPSQP 131 (481)
Q Consensus 74 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~G~a~f~~~~~v~v~~~~~~ 131 (481)
...+.+|+.+++++++.++++++.+++.++++.+ |++++|++++.+++++.+..
T Consensus 201 g~~~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~~~~~v~~~~---- 276 (673)
T PTZ00153 201 GKNGKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHIIDKNIIKGEK---- 276 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEECCCCEEEECC----
T ss_conf 4333222111122235421156999999999999987501776754067666666359993303771463477437----
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 00135555432258638997245525754311101113455542212452111333444321565433210002321013
Q gi|254780675|r 132 AVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLD 211 (481)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG 211 (481)
+..+++++++||||||+|+.||+++.|++.++|||+++.|+++|++++|||||+||||||++|++||
T Consensus 277 -------------~~~~~~aKnIIIATGS~P~~ppgi~iD~k~V~TSd~AL~Le~lPk~m~IIGgGvIGlEFAsvy~aLG 343 (673)
T PTZ00153 277 -------------SGKEFKVKNIIIATGSTPNIPDNIEIDDKSVFTSDEAVKLEGLKNYMGIIGMGIIGIEFADIYTALG 343 (673)
T ss_pred -------------CCCEEECCEEEECCCCCCCCCCCCCCCCCEEECHHHHCCHHHCCCEEEEECCCEEHHHHHHHHHHCC
T ss_conf -------------8855502307990188778899878687668630331270007865899877640131999999769
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCHHHHHHCCCCCCCCEEEEEC---C----------CCEEEEE
Q ss_conf 3310000000012222222122210012-201233221001344202234310124403---6----------7402110
Q gi|254780675|r 212 VDVSLIEVKDRILPVEDSEISQFVQRSL-QKRGIKILTESKISSVKQKGDMVSVQVERK---D----------GSVSSMQ 277 (481)
Q Consensus 212 ~~Vtli~~~~~ll~~~d~~~~~~~~~~l-~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~---d----------G~~~~i~ 277 (481)
++||+||..|++||.+|+|+++.+++.| ++.||++++++.++.++...++..|++... + .+.++++
T Consensus 344 seVTvIE~~~~ILP~~D~DIsk~ler~flK~rGI~i~~gt~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~le 423 (673)
T PTZ00153 344 SEIIFFDYSPELLPIIDADVAKYFERVFIKNKPMNVHLNTEIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELH 423 (673)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 86999953665689889999999999986404948996217999986389857999622334444433222356651687
Q ss_pred CCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEECCC------CEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 2322430574220000232221123573266424874230258------5883044455324441232025555430246
Q gi|254780675|r 278 AEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPG------IYAIGDVAGAPMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 278 ~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs~p~------IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~ 351 (481)
+|.+|+|+||+|||++|+||++||++++|+|.||++|||++|+ |||+|||+|++||||+|.+||.+|+++|++.
T Consensus 424 aD~vLVAvGR~PnT~~LGLE~~GI~~~rG~I~VDe~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~Gk 503 (673)
T PTZ00153 424 VDSCLVATGRKPNTNNLGLEKLKIQMKRGYVQVDDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIEAK 503 (673)
T ss_pred CCEEEECCCCCCCCCCCCCHHHCEEECCCEEEECCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 18999852650277888836418253379799799637568888667787999856885256879998679999987254
Q ss_pred CC----------------CCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEE--EE---------------ECCC
Q ss_conf 64----------------432122320024543033400014968761079727999--99---------------6463
Q gi|254780675|r 352 SK----------------VYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVG--KH---------------SFSA 398 (481)
Q Consensus 352 ~~----------------~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~--~~---------------~~~~ 398 (481)
.. ..|+||.+||+++||+||+|+||+||+||++.+..+.++ .. +|..
T Consensus 504 ~g~~~~~d~~~~~~~~~~~~Pi~Y~~IPs~iYT~PEIAsVGlTE~eAKe~g~~~~vGv~~~~fKan~kalae~~~f~F~~ 583 (673)
T PTZ00153 504 EGEALKIDPENGSHSDWASKPIIYKNIPSVCYTNPELAFIGLTEKEAKQLHPPDNVGVEISFYKANSKILCEHNDISFNN 583 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCC
T ss_conf 55433345333443333456655687770775787404610089999850666553501210134301110023345553
Q ss_pred C--------HHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 8--------23320789821899999889985999999829988999999999987797789963885487789999999
Q gi|254780675|r 399 N--------GKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKES 470 (481)
Q Consensus 399 ~--------~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a 470 (481)
+ ++++++++++||+|+|+|+++++|||+|++|++|+|||+.+++||.+++|++||++++|+|||+||+|.+|
T Consensus 584 ~~~~~a~~~GkA~~~get~GfvKiI~dk~T~eILGahIiG~~AtELI~E~~lA~~~~~t~edla~tIHaHPTLSEvl~~a 663 (673)
T PTZ00153 584 LKKNNSYNKGKYNINDHTNGMVKIIFKEDSKEILGMFIVGNYASILIHEAVLAINLKLSAFDLAHMVHSHPTISEVLDAA 663 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 22221123430002578886499999789995999999889899999999999985999999961237899889989999
Q ss_pred HHHHHCCCC
Q ss_conf 998708866
Q gi|254780675|r 471 ILDAYGRAI 479 (481)
Q Consensus 471 ~~~~~~~~~ 479 (481)
...+.+-.-
T Consensus 664 fk~~~~~~~ 672 (673)
T PTZ00153 664 FKAIAKIRT 672 (673)
T ss_pred HHHHHCCCC
T ss_conf 998641326
No 10
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=854.21 Aligned_cols=462 Identities=40% Similarity=0.705 Sum_probs=434.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-------CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCC
Q ss_conf 98643489998985799999999987993999978-------888624632567370889999999999984-2117821
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-------AGLGGICLNWGCIPTKSLLRSAEILDHIQN-AQHYGLN 72 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~ 72 (481)
||++|||+||||||||++||++|++.|+||+|||+ ..+||||+|+||||||+|++.++.++.+++ ...+|+.
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPsK~L~~~a~~~~~~~~~~~~~Gi~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIS 80 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99618899999888999999999978991999972577677888801447277013099999999999998789865841
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 3487544999999999999998534468763014142100000112222----100236875200135555432258638
Q gi|254780675|r 73 VAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS----EITVSKPSQPAVQPQHPIPKKVLGEGT 148 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~----~v~v~~~~~~~~~~~~~~~~~~~~~~~ 148 (481)
... +.+||++++++++..+++++++++.+++.++|++++|+|+|+++. +|.+... ++.+
T Consensus 81 ~~~-~~~d~~~~~~~k~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~~~~~v~v~~~----------------~~~~ 143 (475)
T PRK06327 81 VDG-VKIDVAKMIGRKDTVVKQMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVKGE----------------GETV 143 (475)
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCC----------------CCCE
T ss_conf 467-63079999999999999988899999871693899999999614788459998389----------------8509
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCC
Q ss_conf 99724552575431110111345554221245211133344432156543321000232101333100000000122222
Q gi|254780675|r 149 YKAKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVED 228 (481)
Q Consensus 149 ~~a~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d 228 (481)
++++++||||||+|+.+|+++.+++.++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|
T Consensus 144 i~a~~iiIATGs~p~~lp~~~~~~~~~~ts~~~~~l~~~Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d 223 (475)
T PRK06327 144 VKAKNVIIATGSEPRHLPGVPFDNEIILDNEGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAAD 223 (475)
T ss_pred EEECEEEECCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf 99687999789966669988878743873676516133896799996747589999999954985999985364334458
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEE
Q ss_conf 2212221001220123322100134420223431012440367402110232243057422000023222112357-326
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGC 307 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~ 307 (481)
+++++.+++.|++.||++++++++++++..++++.+++...+|+.+++++|.||+|+||+||++.|+|+++||+++ +|+
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~L~l~~~Gv~l~~~G~ 303 (475)
T PRK06327 224 EQVAKEALKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGF 303 (475)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 78899999988736929970889999995487399999938998799998199993263614545586213874478998
Q ss_pred EEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCC
Q ss_conf 64248742302585883044455324441232025555430246644321223200245430334000149687610797
Q gi|254780675|r 308 IIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGL 387 (481)
Q Consensus 308 i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~ 387 (481)
|.||++||||+|||||+|||+|+++|+|+|.+||++|++|+++... ++||..+|++|||+||+|+||+||+||+++|+
T Consensus 304 I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~eg~~a~~~~~g~~~--~~~~~~vP~~vft~Peia~vGlte~~a~~~g~ 381 (475)
T PRK06327 304 IPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKG--HIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGV 381 (475)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEECCCCEEEEECCHHHHHHCCC
T ss_conf 6569975469975387101478877755999999999998669997--66567661488437767866588999987699
Q ss_pred CEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 27999996463823320789821899999889985999999829988999999999987797789963885487789999
Q gi|254780675|r 388 DIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467 (481)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l 467 (481)
+|++.+++|+.++|++++++++||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|+|
T Consensus 382 ~~~~~~~~~~~~~ra~~~~~~~G~~klv~~~~~~~IlG~~~vg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPT~~E~~ 461 (475)
T PRK06327 382 EYKAGKFPFMANGRALAMGEPDGFVKVIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVW 461 (475)
T ss_pred CEEEEEEECCCCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 88999997776624301589848999999999897999999899999999999999988898999940777798889999
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999870886659
Q gi|254780675|r 468 KESILDAYGRAIHS 481 (481)
Q Consensus 468 ~~a~~~~~~~~~~~ 481 (481)
++|++++.+||||-
T Consensus 462 ~~Aa~~~~~~~~~~ 475 (475)
T PRK06327 462 HEAALAVDKRALHF 475 (475)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99999755998889
No 11
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=854.15 Aligned_cols=456 Identities=38% Similarity=0.662 Sum_probs=430.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHH
Q ss_conf 489998985799999999987993999978888624632567370889999999999984211782134-8754499999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVA-GKVEFNIEDI 84 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 84 (481)
.|+|||+||||++||++|++.|++|+|||++.+||||+|+||||||+|+++++.++.+++...||+... ..+.+||+.+
T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~Gi~~~~~~~~id~~~~ 81 (458)
T PRK06912 2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDIVRKANHYGITLNNGSISIDWKQM 81 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 49999008899999999997859599995899787403368487899999999999997667459501278755289999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 99999999985344687630141421000001122221002368752001355554322586389972455257543111
Q gi|254780675|r 85 VKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRH 164 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~~ 164 (481)
+++++..+.++.++++.++++.+|++++|+|+|.+++++.|...++ +.+++|+++||||||+|..
T Consensus 82 ~~~~~~~v~~~~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~~---------------~~~i~a~~iiIATGs~P~~ 146 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGGK---------------EEVVDAEQFIIATGSEPTE 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCEEEEECCCC---------------EEEEEEEEEEECCCCCCCC
T ss_conf 9999999999999999999738918991527980388689986996---------------1899741899988987746
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 01113455542212452111333444321565433210002321013331000000001222222212221001220123
Q gi|254780675|r 165 IEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGI 244 (481)
Q Consensus 165 ~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv 244 (481)
||+.+.+++.+++|+++++++++|++++|||||+||+|||++|+++|++||++++++++||.+|+++++.+++.|++.||
T Consensus 147 ~p~~~~d~~~~~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi 226 (458)
T PRK06912 147 LPFAPFDGKWILNSSHAMSLPSIPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGV 226 (458)
T ss_pred CCCCCCCCCEEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99788788769846554061227965999899747999999999659879999844667830567899999999986695
Q ss_pred CCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEE
Q ss_conf 32210013442022343101244036740211023224305742200002322211235732664248742302585883
Q gi|254780675|r 245 KILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPGIYAI 324 (481)
Q Consensus 245 ~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs~p~IyA~ 324 (481)
++++++.+++++++++.+.++ . +|+.+++++|.||+|+||+||++.|+|+++|+++++++|.||++||||+|||||+
T Consensus 227 ~i~~~~~v~~i~~~~~~~~~~--~-~~~~~~~~~d~vl~a~Gr~Pn~~~l~l~~~gv~~~~~gI~Vd~~~~Ts~p~IyA~ 303 (458)
T PRK06912 227 EIFTGAALKGLNNYKKQASFE--Y-EGSIQEVNPDFVLVAVGRKPRVQQLNLEKAGIQFSNKGISVNEHMQTNVPHIYAC 303 (458)
T ss_pred EEECCCEEEEEECCCCEEEEE--E-CCCEEEEECCEEEEECCCCCCCCCCCHHHCCEEECCCCEECCCCCCCCCCEEEEE
T ss_conf 998288799998669879999--5-8963899647999904876642556714418367699547466667687649996
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHHHHC
Q ss_conf 04445532444123202555543024664432122320024543033400014968761079727999996463823320
Q gi|254780675|r 325 GDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAIT 404 (481)
Q Consensus 325 GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~~~~ 404 (481)
|||+++++|+|+|.+||++|++|++|.+. ++||..+|++|||+||+|+||+||+||+++|++|++.+++|++++|+++
T Consensus 304 GDv~g~~~l~h~A~~~g~~aa~~~~g~~~--~~~~~~vP~~ift~Peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~ 381 (458)
T PRK06912 304 GDVIGGIQLAHVAFHEGTTAALHASGEDV--KVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFSANGKALI 381 (458)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf 23789877732899999999997579986--3124667359982666599858899998759986999997566703411
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 78982189999988998599999982998899999999998779778996388548778999999999870886659
Q gi|254780675|r 405 LGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIHS 481 (481)
Q Consensus 405 ~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~~~~~ 481 (481)
+++++||+|+++|+++++|||+|++|++|+||||.++++|++++|+++|++++|+|||+||++++|++++.+||||+
T Consensus 382 ~~~~~G~vKlv~d~~~~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~A~~~a~g~~~h~ 458 (458)
T PRK06912 382 IGEQTGKVKVIVEPKYQEIVGISIIGPHATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVHA 458 (458)
T ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 69984899999999989699999989999999999999998879899994167689875999999999864998899
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=0 Score=849.25 Aligned_cols=454 Identities=31% Similarity=0.520 Sum_probs=425.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 86434899989857999999999879939999788886246325673708899999999999842117821348754499
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI 81 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (481)
|++|||+|||+||||++||++|++.|++|+||||+.+||||+|+||||||+|+++++..+..++...+|+.....+.+||
T Consensus 2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~d~ 81 (459)
T PRK06370 2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSIGGPVAVDF 81 (459)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 87175899998889999999999689919999689977432146835289999999999999776607922588677689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 999999999999853446876301-4142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 82 EDIVKRSRDISHRLNRGVEFLMHK-NKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
++++++++..+.+++.+++..+++ .+|+++.|+|+|.++++|.|. +.+++++++||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~~~tv~v~-------------------~~~~~a~~iiIATGs 142 (459)
T PRK06370 82 KAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEGPNTVRVG-------------------GELLRAKRIFINTGA 142 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC-------------------CEEEEEEEEEECCCC
T ss_conf 9999999999987523389885225872999968997156753569-------------------859976289988898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 31110111345554221245211133344432156543321000232101333100000000122222221222100122
Q gi|254780675|r 161 RPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 (481)
Q Consensus 161 ~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 240 (481)
+|+.||....+...++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|+++++.+++.|+
T Consensus 143 ~p~~p~ipG~~~~~~~ts~~~~~l~~~P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~ 222 (459)
T PRK06370 143 RAAVPPIPGLDEVGYLTNETVFSLDELPEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILE 222 (459)
T ss_pred CCCCCCCCCCCCCCEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 65457778878787874468737154895499989847799999999963988999996573455547567899999998
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECC
Q ss_conf 0123322100134420223431012440367402110232243057422000023222112357-326642487423025
Q gi|254780675|r 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVP 319 (481)
Q Consensus 241 ~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p 319 (481)
+.||+|+++++++++++++++..+++... ++.+++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||+|
T Consensus 223 ~~gi~i~~~~~v~~i~~~~~~~~v~~~~~-~~~~~i~~d~vl~a~Gr~Pnt~~L~Le~~gv~~d~~G~I~Vd~~~~Ts~p 301 (459)
T PRK06370 223 REGIDVRLDAKCLRVARDGDGIAVGLDCA-GGAPEIAGSHILVAVGRVPNTDDLGLEAAGVATDARGYIKVDDQLRTTNP 301 (459)
T ss_pred HCCCCCCCCCEEEEEEEECCEEEEEEEEC-CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCC
T ss_conf 52986202757899998299899999979-97389997589996143146555471003863289985887997563787
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCC
Q ss_conf 85883044455324441232025555430246644321223200245430334000149687610797279999964638
Q gi|254780675|r 320 GIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSAN 399 (481)
Q Consensus 320 ~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~ 399 (481)
||||+|||+|+++|+|+|.+||++|++|+++..+ .+.+|..+|+++||+||+|+||+||+||+++|+++++++++|+.+
T Consensus 302 ~IyA~GDv~g~~~lah~A~~eg~~a~~n~~~~~~-~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~~~~~~~~~~~~~ 380 (459)
T PRK06370 302 GIYAAGDCNGRGAFTHTAYNDAEIVAANLLDGGP-RKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRV 380 (459)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCEEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCC
T ss_conf 4498311468867745899999999999836997-432024430466227546885389999987699879999988857
Q ss_pred HHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 23320789821899999889985999999829988999999999987797789963885487789999999998708
Q gi|254780675|r 400 GKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYG 476 (481)
Q Consensus 400 ~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~ 476 (481)
+|++..++++||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||+|++|++.+-+
T Consensus 381 ~ra~~~~~~~G~vKlv~~~~t~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~dl~~~i~~hPT~sE~l~~aa~~~~r 457 (459)
T PRK06370 381 GRAVEKGETQGFMKVHVDADTDRILGATILGVHGDEMIHEILDAMTAGAPYTTLSRAMHIHPTVSELIPTLAQALRR 457 (459)
T ss_pred HHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 55654589847999999999897999999889999999999999988898999940777798869999999997442
No 13
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=100.00 E-value=0 Score=861.04 Aligned_cols=457 Identities=36% Similarity=0.603 Sum_probs=424.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 34899989857999999999879---939999788886246325673708899999999999842117821348754499
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLG---FKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI 81 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G---~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (481)
||++|||+|.|+++||+++++.| .||++||++.+||||+|+||||||.|++++++.+..++...|--....++.+++
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~GGTCVNVGCVPSK~llraa~~~~~a~~~~~f~g~~~~~~~v~~ 80 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLGGTCVNVGCVPSKILLRAAEVAHYARKPPFFVGLLAATVEVDF 80 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 91899827689999999998548871599996378977615852327458999999887676347777775354344238
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 999999999999853-4468763014-14210000011222210023687520013555543225863899724552575
Q gi|254780675|r 82 EDIVKRSRDISHRLN-RGVEFLMHKN-KVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
.++++..++.++.|+ +-|+.+++.+ +|++++|+|+|.|+++|+|...++. ...+.++++|||||
T Consensus 81 ~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~F~d~~~V~v~~~~GG--------------~~~~~~k~~lIATG 146 (494)
T TIGR02053 81 EELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRARFKDPKTVKVDLAEGG--------------REVVGAKRFLIATG 146 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCC--------------CCHHHCCCEEEEEC
T ss_conf 9999998899999877678999851798679986799847878997278885--------------00421386689646
Q ss_pred CCCCC--CCCCCCCC--CCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 43111--01113455--5422124521113334--443215654332100023210133310000000012222222122
Q gi|254780675|r 160 ARPRH--IEGIEPDS--HLIWTYFDALKPSKTP--KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQ 233 (481)
Q Consensus 160 s~p~~--~~g~~~~~--~~~~t~~~~l~l~~~p--~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~ 233 (481)
|+|.. +||+.... -..|||+++|.+++.| +|++|||||++|+|+||+|+|||++|+|++|.++|||.+||++++
T Consensus 147 a~P~~P~IPGLke~~~~G~ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~ 226 (494)
T TIGR02053 147 ARPAVPPIPGLKEADKAGRYLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISA 226 (494)
T ss_pred CCCCCCCCCCCCCHHHCCCEECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHH
T ss_conf 77887446780045336843213777256879970468888652899999999985776140367998644646888999
Q ss_pred CCCHHHHH-CCCCCCCCH-HHHHHCC-CCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCC-CCCCCCCCC-CEEE
Q ss_conf 21001220-123322100-1344202-23431012440367402110232243057422000023-222112357-3266
Q gi|254780675|r 234 FVQRSLQK-RGIKILTES-KISSVKQ-KGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIG-LEKIGVKTS-NGCI 308 (481)
Q Consensus 234 ~~~~~l~~-~Gv~i~~~~-~v~~v~~-~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~-Le~~gi~~~-~g~i 308 (481)
.+++.|++ +||++++.+ +++.|+. +++...++++..++. .++++|.+|+||||+||++.|| |+++|++++ +|+|
T Consensus 227 ~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~-~~~eAd~lLVATGR~PN~~gL~GLe~~GVk~~~~G~I 305 (494)
T TIGR02053 227 AVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGK-AEVEADELLVATGRRPNTDGLNGLEKAGVKLDERGGI 305 (494)
T ss_pred HHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCC-CEEEHHHHHHHHCCCCCCCCCCCHHHCCCEECCCCCE
T ss_conf 999984147877998044035544452798189998558987-4574311255527875666677423458346688547
Q ss_pred EECCCCEEECCCCEEECCCCCC-CC----CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHH
Q ss_conf 4248742302585883044455-32----444123202555543024664432122320024543033400014968761
Q gi|254780675|r 309 IVDGYGRTNVPGIYAIGDVAGA-PM----LAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKAR 383 (481)
Q Consensus 309 ~vd~~~qTs~p~IyA~GDv~g~-~~----l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~ 383 (481)
.|||+||||+|+|||+|||+++ ++ |.++|.+||.+||.|+++.... .+||.++|.+|||+|++|+|||||+||.
T Consensus 306 ~Vde~lrTsnp~iYAAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~-~~d~~~~P~VvFT~P~~AsVGLtE~ea~ 384 (494)
T TIGR02053 306 LVDERLRTSNPGIYAAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANK-KLDLTVIPRVVFTDPAVASVGLTEAEAQ 384 (494)
T ss_pred EECCCCCCCCCCEEEEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCC-EECCCCCCEEEECCCCEEECCCCHHHHH
T ss_conf 872620358777246202237874652357778750580452010179881-5540218836976887121357589898
Q ss_pred CCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEE-------EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 0797279999964638233207898218999998899859-------999998299889999999999877977899638
Q gi|254780675|r 384 SQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEV-------LGVHMVGPEVTELIQGFSIAMSLETTEEELMHT 456 (481)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~i-------lG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~ 456 (481)
+.|+++++...+.++.+|++++++++||+|+++|++|+|| ||+|+++|+|+|+||.+++||+.+||++||.|+
T Consensus 385 ~~G~~~~~R~~~~~~VPra~~~r~t~G~iKlva~~~T~K~svkrGkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt 464 (494)
T TIGR02053 385 KAGIEVDSRTLPLEAVPRARINRETRGFIKLVADPGTGKVSVKRGKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDT 464 (494)
T ss_pred HCCCCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 55970456665340368898578996148999737873587641427787752311788999999999807837788731
Q ss_pred CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 854877899999999987088
Q gi|254780675|r 457 VFPHPTISETMKESILDAYGR 477 (481)
Q Consensus 457 ~~~hPt~~E~l~~a~~~~~~~ 477 (481)
+|+|||++|+|+-|++..+..
T Consensus 465 ~h~fpT~~EgLKLAAl~F~~D 485 (494)
T TIGR02053 465 LHPFPTMAEGLKLAALTFYRD 485 (494)
T ss_pred CCCCCCHHHHHHHHHHHHCCC
T ss_conf 154566789999998522046
No 14
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=849.85 Aligned_cols=455 Identities=31% Similarity=0.537 Sum_probs=427.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984211782134-87544999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVA-GKVEFNIE 82 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 82 (481)
.|||+||||||||++||++|+++|++|+|||++.+||||+|+||||||+|+++++..+.+++...+|+... ..+.+||+
T Consensus 1 M~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~GGtC~n~GCiPsK~Li~~a~~~~~~~~~~~~G~~~~~~~~~~d~~ 80 (467)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGVGGAAVLTDCVPSKTLIASAEVRTELRRAADLGVRFDLEDAKVDLP 80 (467)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHH
T ss_conf 98199987488999999999978795999967997846767783667999999999999976352580447875550699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9999999999985344687630141421000001122------2210023687520013555543225863899724552
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKN------PSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIII 156 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~------~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivI 156 (481)
.++++++.........++..+++.+|++++|+|+|++ +++|.|...++ ++.+++|+++||
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~l~~~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g--------------~~~~i~a~~iII 146 (467)
T PRK07845 81 QVNARVKRLARAQSADIRAQLERAGVRVIAGRGRLDDDTPGLGPHRVKVTTADG--------------TEEELEADVVLI 146 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEEECCC--------------CEEEEEECEEEE
T ss_conf 999999999998666699998757968997389992066567787799993589--------------758999296999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 57543111011134555422124521113334443215654332100023210133310000000012222222122210
Q gi|254780675|r 157 ATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQ 236 (481)
Q Consensus 157 ATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~ 236 (481)
||||+|+.||+..++++.++||+++++++++|++++|||||+||+|+|++|+++|++||++++++++||.+|+++++.++
T Consensus 147 ATGs~P~~lp~~~~dg~~~~ts~~~~~l~~~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~ 226 (467)
T PRK07845 147 ATGASPRILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLE 226 (467)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 58998777999788985178205531710089869998987999999999997398799999557445431888999999
Q ss_pred HHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCE
Q ss_conf 01220123322100134420223431012440367402110232243057422000023222112357-32664248742
Q gi|254780675|r 237 RSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGR 315 (481)
Q Consensus 237 ~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~q 315 (481)
+.|++.||++++++++++++++++++.+++ .|| +++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||
T Consensus 227 ~~l~~~gv~i~~~~~~~~v~~~~~~~~v~~--~~g--~~i~~d~vl~a~Gr~Pn~~~lgL~~~gv~~~~~G~I~vd~~~r 302 (467)
T PRK07845 227 EVFARRGMTLLKRSRAESVTRTGDGVLVTL--TDG--RTVEGSHALMAVGSVPNTAGLGLEEVGVELGPGGHITVDRVSR 302 (467)
T ss_pred HHHHHCCEEEECCCEEEEEEECCCEEEEEE--CCC--CEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf 999976909972887999998098269998--899--7998779999545025525557032187547788566798766
Q ss_pred EECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEE
Q ss_conf 30258588304445532444123202555543024664432122320024543033400014968761079727999996
Q gi|254780675|r 316 TNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHS 395 (481)
Q Consensus 316 Ts~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~ 395 (481)
||+|||||+|||+|.++|+|+|.+||++|++|+++... .++||..+|++|||+||+|+||+||+||++.++++++.+++
T Consensus 303 Ts~~~IyA~GDv~g~~~l~h~A~~qg~ia~~n~~g~~~-~~~~~~~ip~~vft~PeiA~VGlte~ea~~~~~~~~~~~~~ 381 (467)
T PRK07845 303 TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEGV-SPIRLRTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLP 381 (467)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEE
T ss_conf 58770999704578867655899999999999707997-54434556248965743340038899998779976999997
Q ss_pred CCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 46382332078982189999988998599999982998899999999998779778996388548778999999999870
Q gi|254780675|r 396 FSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAY 475 (481)
Q Consensus 396 ~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~ 475 (481)
|+.++|+++++.++||+|+++|+++++|||+|++||+|+||||.+++||++++|+++|.+++|+|||+||++++|+|.++
T Consensus 382 ~~~~~ra~~~~~~~G~~Kli~~~~~~~iLG~~ivG~~A~elI~~~a~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~l~ 461 (467)
T PRK07845 382 LATNPRAKMSGLRDGFVKIFCRPGTGVVIGGVVVAPRASELILPIAVAVQNRLTVDDLAQTFAVYPSLSGSITEAARRLM 461 (467)
T ss_pred CCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77585764079982699999999989699999989998999999999998839899993167779878999999999865
Q ss_pred CC
Q ss_conf 88
Q gi|254780675|r 476 GR 477 (481)
Q Consensus 476 ~~ 477 (481)
++
T Consensus 462 ~~ 463 (467)
T PRK07845 462 AH 463 (467)
T ss_pred CC
T ss_conf 78
No 15
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=0 Score=845.14 Aligned_cols=456 Identities=32% Similarity=0.532 Sum_probs=422.2
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 986-434899989857999999999879939999788-886246325673708899999999999842117821348754
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (481)
|+- +|||+|||+||||++||++|++.|+||+|||++ .+||||+|+||||||+|++++..+..++....++. ......
T Consensus 2 m~m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~~~~~~~-~~~~~~ 80 (465)
T PRK05249 2 MHMYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQNPLYRD-YRVKLR 80 (465)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCC
T ss_conf 9877789899997789999999999789929999769997665344461767999999999999875542465-566686
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 49999999999999985344687630141421000001122221002368752001355554322586389972455257
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIAT 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIAT 158 (481)
++|++++++++..++++.+.++..+++++|++++|+|+|.++++|.|...++. ..+++++++||||
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~dg~--------------~~~i~a~~iIIAT 146 (465)
T PRK05249 81 ITFADLLARADRVINKQVEVRRGFYARNRVEVIQGRASFVDPHTVEVECPDGS--------------VETLTAEKIVIAT 146 (465)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCC--------------EEEEEEEEEEEEC
T ss_conf 28999999999999888789999998689789984789727984044348996--------------2899842799953
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 54311101113455542212452111333444321565433210002321013331000000001222222212221001
Q gi|254780675|r 159 GARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238 (481)
Q Consensus 159 Gs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 238 (481)
||+|+.||+++.++..+++|++++++.++|++++|||||++|||+|++|+++|++||++++++++||.+|+++++.+.+.
T Consensus 147 Gs~p~~p~~~~~~~~~v~~sd~~l~l~~~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ll~~~d~~~~~~l~~~ 226 (465)
T PRK05249 147 GSRPYRPDDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRLLSFLDDEISDALSYH 226 (465)
T ss_pred CCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHH
T ss_conf 75245678789898728836785433007975999999821799999999609877897216600022189999999999
Q ss_pred HHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEE
Q ss_conf 220123322100134420223431012440367402110232243057422000023222112357-3266424874230
Q gi|254780675|r 239 LQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTN 317 (481)
Q Consensus 239 l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs 317 (481)
|++.||++++++++++++.+++++.+++ .+| +++++|.||+|+||+||++.|+|+++||++| +|+|.||++||||
T Consensus 227 l~~~gI~i~~~~~v~~i~~~~~~~~v~~--~~g--~~i~~D~Vl~a~Gr~pn~~~L~Le~~Gv~~d~rG~I~VD~~~~Ts 302 (465)
T PRK05249 227 FRNSGVVIRHNEEYEKVEGGDDGVILHL--KSG--KKIKADCLLYANGRTGNTDGLNLENIGLEADSRGQLKVNSNYQTA 302 (465)
T ss_pred HHHCCCEEEECCEEEEEEEECCEEEEEE--CCC--CEEEEEEEEECCCCCCCCCCCCCHHCCEEECCCCCEEECCCCCCC
T ss_conf 9987929997988999996087679994--799--599870899887666676656604257578999848379798779
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+|+++|+|+|.+||++|++||+|.+.. .++..+|++|||+||+|+||+||+||+++|++|++.+++|+
T Consensus 303 ~p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~g~~~~--~~~~~iP~~vft~PeiA~VG~te~~a~~~g~~~~v~~~~~~ 380 (465)
T PRK05249 303 VPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATA--HLVEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFK 380 (465)
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCEEECCCCCEEEEECCHHHHHHCCCCEEEEEEECC
T ss_conf 9870751125787677267899999999997499976--55466761662577457750889999976998799999887
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 382332078982189999988998599999982998899999999998779---77899638854877899999999987
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLET---TEEELMHTVFPHPTISETMKESILDA 474 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~---t~~~l~~~~~~hPt~~E~l~~a~~~~ 474 (481)
.++|++++++++||+|+++|+++++|||+|++||+|+||||.++++|.+++ |+++|.+++|+|||+||++++|++++
T Consensus 381 ~~~ra~~~~~~~GfvKlv~~~~~~~IlG~~ivG~~A~elI~~~~~~~~~~~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a 460 (465)
T PRK05249 381 ELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAALDG 460 (465)
T ss_pred CCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 47678766898679999999998979999998998799999999999975431669999478886988899999999987
Q ss_pred HCC
Q ss_conf 088
Q gi|254780675|r 475 YGR 477 (481)
Q Consensus 475 ~~~ 477 (481)
++|
T Consensus 461 ~~~ 463 (465)
T PRK05249 461 LNR 463 (465)
T ss_pred HCC
T ss_conf 606
No 16
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=837.79 Aligned_cols=456 Identities=41% Similarity=0.657 Sum_probs=424.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 64348999898579999999998799399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
++|||+||||||||++||++|++.|++|+|||++.+||||+|+||||||+|+++++..+..++...+|+... ..+||+
T Consensus 2 ~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~--~~i~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCMPSKALIAAAEAFHEAKHAAKFGIHVD--PKIDGK 79 (460)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCHH
T ss_conf 816989999778999999999969790999958998861050571515999999999999975341486667--840999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999999999998534468-7630141421000001122221002368752001355554322586389972455257543
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVE-FLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~ 161 (481)
+++++++..++++...+. .+.+..++++++|+++|.++++|.|.. +.+++++++||||||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~~~~~v~v~~------------------~~~i~a~~vIIATGs~ 141 (460)
T PRK06292 80 KVMARVRSERDRFVGGVVEGLEKKPKIDKIKGTARFIDPNTVEVGN------------------GEEIEAKNIVIATGSR 141 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECC------------------CEEEEECEEEEECCCC
T ss_conf 9999999999998656899997338819998489963798899789------------------7799615899960899
Q ss_pred CCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1110111-345554221245211133344432156543321000232101333100000000122222221222100122
Q gi|254780675|r 162 PRHIEGI-EPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 (481)
Q Consensus 162 p~~~~g~-~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 240 (481)
|+.+|+. ..++..++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|+++++.+++.|+
T Consensus 142 ~~~iPg~~~~~~~~~~t~~~~~~~~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~~d~~~~~~~~~~l~ 221 (460)
T PRK06292 142 PPVIPGSWLILGDRLITSDDAFELDDLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLTDPEISDQAQKLLS 221 (460)
T ss_pred CCCCCCCCCCCCCCEEECHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999841248872894644533555885699999867887999999846986999962475432149999999999986
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECC
Q ss_conf 0123322100134420223431012440367402110232243057422000023222112357-326642487423025
Q gi|254780675|r 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVP 319 (481)
Q Consensus 241 ~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p 319 (481)
+. |++++++.+++++.+++.+.+++... |+.+++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||+|
T Consensus 222 ~~-i~i~~~~~v~~i~~~~~~~~v~~~~~-~~~~~i~~D~vl~aiG~~Pn~~~L~l~~~gi~ld~~G~I~VD~~~~Ts~p 299 (460)
T PRK06292 222 KE-FKIKLGAKVTSVERKGDKVEVEYEKG-GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDPHTQTNVP 299 (460)
T ss_pred CC-CEEEECCEEEEEEECCCEEEEEEECC-CCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 09-88992877999997599799999549-96289995289991375135556572311863179998814887302887
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCC
Q ss_conf 85883044455324441232025555430246644321223200245430334000149687610797279999964638
Q gi|254780675|r 320 GIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSAN 399 (481)
Q Consensus 320 ~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~ 399 (481)
||||+|||+|+++|+|+|.+||++|++||++... .++||..+|++|||+||+|+||+||+||+++|++|++.+++|+.+
T Consensus 300 ~IyA~GDv~g~~~la~~A~~qg~~a~~~i~~~~~-~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~~~~~~~~~~~~ 378 (460)
T PRK06292 300 GIYAAGDVNGGPPLLHEAADEGIIAAENAAYPQV-GPVDYRVIPSVVFTDPQIASVGKTEEELKAAGIDYVVGKVPFEAQ 378 (460)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCC
T ss_conf 3587403578877678999999999999727998-442003552378636527987688999987699779999987877
Q ss_pred HHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 23320789821899999889985999999829988999999999987797789963885487789999999998708866
Q gi|254780675|r 400 GKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAI 479 (481)
Q Consensus 400 ~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~~~~ 479 (481)
+|+++.+.++||+|+++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||.+++|++++.+|+|
T Consensus 379 ~~a~~~~~~~G~iKli~d~~~~~ilG~~ivg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPt~sE~~~~a~~~~~~~~~ 458 (460)
T PRK06292 379 GRARVMGKNDGFVKVYADKKTGRLLGAHIIGPEAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLEEGLRTALRDLAAKLI 458 (460)
T ss_pred CHHEECCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 02110589838999999999997999999899999999999999988598999941777798869999999998647888
Q ss_pred CC
Q ss_conf 59
Q gi|254780675|r 480 HS 481 (481)
Q Consensus 480 ~~ 481 (481)
|-
T Consensus 459 h~ 460 (460)
T PRK06292 459 HG 460 (460)
T ss_pred CC
T ss_conf 99
No 17
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=100.00 E-value=0 Score=827.30 Aligned_cols=448 Identities=29% Similarity=0.500 Sum_probs=412.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
+|||+|||+||||..+|.++ .|+||+|||++.+||||+|+||||||+|++++++++.+++...+|++... ..+||++
T Consensus 1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~gi~~~~-~~~~~~~ 77 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVAQTIREASRLGVDAHI-DRVRWPD 77 (453)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCC-CCCCHHH
T ss_conf 97789989888999999998--29929999789977817161668899999999999999765626820677-8419999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999998534-46876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 84 IVKRSRDISHRLNR-GVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
++++++..++.++. +.+.+++..+|++++|+|+|.++++|.|.... +..+|+++++||||||+|
T Consensus 78 ~~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~~~~~v~v~~~~---------------~~~~i~a~~iiIATGS~P 142 (453)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFVDADGLYTLRTG---------------DGEEITADQIVIAAGSRP 142 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCC---------------CCEEEEECEEEEECCCCC
T ss_conf 99999999999987569997158991899848999159867861379---------------846998164999028877
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 11011134555422124521113334443215654332100023210133310000000012222222122210012201
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKR 242 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~ 242 (481)
+.||....++..++||+++|+++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+.+.++ .
T Consensus 143 ~~p~~~g~~~~~~~ts~~~l~l~~lP~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~~-~ 221 (453)
T PRK07846 143 VIPPAIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIAG-K 221 (453)
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-C
T ss_conf 789986657877986643001543886499989975799999999952992689974653244347899999999986-4
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECCCC
Q ss_conf 23322100134420223431012440367402110232243057422000023222112357-32664248742302585
Q gi|254780675|r 243 GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVPGI 321 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p~I 321 (481)
++++++++.+++++++++++.+++ .+| .++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||+|||
T Consensus 222 ~i~i~~~~~v~~~~~~~~~~~v~~--~~g--~~i~~d~vl~a~GR~Pn~~~l~l~~~gi~~~~~G~I~vd~~~~Ts~~~I 297 (453)
T PRK07846 222 KWDLRLGRNVVGVSQDGSGVTLRL--DDG--STVDADVLLVATGRVSNGDLLDAEAAGVDVHEDGRVKVDEYQRTSARGV 297 (453)
T ss_pred CEEEEECCEEEEEEEECCEEEEEE--CCC--CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEE
T ss_conf 859995768999997098359994--799--6998549999777566635558331477445468543267446478729
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHH
Q ss_conf 88304445532444123202555543024664432122320024543033400014968761079727999996463823
Q gi|254780675|r 322 YAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGK 401 (481)
Q Consensus 322 yA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~ 401 (481)
||+|||+++++|+|+|.+||++|++|+++..+..+.||..+|++|||+||+|+||+||+||+++|++|.+.+++|..+++
T Consensus 298 yA~GDv~g~~~lah~A~~qg~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~~~~~~~~~~~~~~ 377 (453)
T PRK07846 298 FALGDVSSPYQLKHVANHEARVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAY 377 (453)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 99874688767622899999999999725899732246764159981786799869999998769977999997787611
Q ss_pred HHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 320789821899999889985999999829988999999999987797789963885-4877899999999987
Q gi|254780675|r 402 AITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVF-PHPTISETMKESILDA 474 (481)
Q Consensus 402 ~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~-~hPt~~E~l~~a~~~~ 474 (481)
++++++++||+|+++|+++++|||+|++||+|+||||.+++||++++|++||++++| +|||+||++++|++.+
T Consensus 378 ~~~~~~~~G~vKli~d~~~~~IlG~~ivg~~A~ElI~~~alai~~~~t~~dla~~~~~~HPT~sE~i~~A~~~l 451 (453)
T PRK07846 378 GWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLTAREMARGQYWIHPALPEVVENALLGL 451 (453)
T ss_pred CEECCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 00027985899999999989899999988999999999999998779599994188667996289999999636
No 18
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=0 Score=828.38 Aligned_cols=446 Identities=29% Similarity=0.492 Sum_probs=406.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 64348999898579999999998799399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
++|||+|||+||||+.+|.+++ |+||+|||++.+||||+|+||||||+|++++++.+.+++...||+.... ..++|+
T Consensus 1 k~YDviVIGaGpgG~~~a~~~a--g~kValvEk~~~GGtCln~GCIPsK~ll~~a~~~~~~~~~~~~Gi~~~~-~~~~~~ 77 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPRFA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEI-DSVRWP 77 (452)
T ss_pred CCCCEEEECCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCC-CCCCHH
T ss_conf 9476899998689999999982--9909999789927858023588899999999999999777735832566-730799
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 9999999----999985344687630141421000001122221002368752001355554322586389972455257
Q gi|254780675|r 83 DIVKRSR----DISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIAT 158 (481)
Q Consensus 83 ~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIAT 158 (481)
+++++.. +........+...++..+|++++|+|+|.++++|++.. ..+++++++||||
T Consensus 78 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~~~tv~v~~------------------g~~~~a~~iiIAT 139 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGD------------------GEEITGDQIVIAA 139 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEECCC------------------CCEEEECEEEECC
T ss_conf 9999998767899975599998536778869999899993785798189------------------8789846699937
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 54311101113455542212452111333444321565433210002321013331000000001222222212221001
Q gi|254780675|r 159 GARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238 (481)
Q Consensus 159 Gs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 238 (481)
||+|+.||++..++..++||+++|+++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+.+.
T Consensus 140 Gs~P~~p~~~~~~~~~~~ts~~~l~l~~lP~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~~ 219 (452)
T TIGR03452 140 GSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEI 219 (452)
T ss_pred CCCCCCCCCCCCCCCEEECCHHHHCCHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99887888767789868655655433005866999888689999999999619949999967622333488999999999
Q ss_pred HHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEE
Q ss_conf 220123322100134420223431012440367402110232243057422000023222112357-3266424874230
Q gi|254780675|r 239 LQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTN 317 (481)
Q Consensus 239 l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs 317 (481)
++ .++++++++.+.+++++++++.++++ +| .++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||
T Consensus 220 ~~-~~~~i~~~~~v~~~~~~~~~~~v~~~--~g--~~~~~d~vl~a~GR~Pn~~~L~l~~~gv~~~~~g~I~vd~~~~Ts 294 (452)
T TIGR03452 220 AK-KKWDIRLGRNVTAVEQDGDGVTLTLD--DG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTS 294 (452)
T ss_pred HH-CCEEEEECCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 75-68299932389999973980399946--99--799822899924876663666801229643579873028767868
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+++++|+|+|.+||++|++||++.....++||..+|+++||+||+|+||+||+||+++|+++++.+++|.
T Consensus 295 ~~~IyA~GDv~g~~~Lah~A~~eg~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~~~~~~~~~~ 374 (452)
T TIGR03452 295 ARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYG 374 (452)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECC
T ss_conf 97399974068875770089999999999970789974125776514998257679985899999975997799999778
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 3823320789821899999889985999999829988999999999987797789963885-4877899999999987
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVF-PHPTISETMKESILDA 474 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~-~hPt~~E~l~~a~~~~ 474 (481)
.+++++++++++||+|+++|+++++|||+|++|++|+|+||.+++||++++|++||++++| +|||+||++++|++.+
T Consensus 375 ~~~~a~~~~~~~G~vKlv~d~~~~~ILG~~ivG~~A~ElI~~~a~ai~~~~t~~dl~~~~~~~HPTlsE~i~eA~lal 452 (452)
T TIGR03452 375 DVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred CCCCHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf 761111137983899999999989799999989999999999999998869799994187557996289999998459
No 19
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=0 Score=820.88 Aligned_cols=444 Identities=33% Similarity=0.520 Sum_probs=409.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978888624632567370889999999999984-21178213487544
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQN-AQHYGLNVAGKVEF 79 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~ 79 (481)
||++|||+||||||||++||++|+++|+||+|||++.+||||+|+||||||+|++++++.+.+++ +..||+.. ..+.+
T Consensus 1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~-~~~~~ 79 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDV-TENKF 79 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC
T ss_conf 99748889999888999999999968796999937997852541571646999999999999997787558136-87752
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999999853446876301414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
||++++++++..++++++.++..+++.+|++++|+|+|.|+++|+|. +.+++++++|||||
T Consensus 80 d~~~~~~~~~~~i~~l~~~~~~~~~~~~V~~~~g~a~f~~~~tv~v~-------------------~~~i~a~~ivIATG 140 (450)
T PRK06116 80 DWKKLIANRDAYIDRLHGSYRRGLENNGVDLIEGFARFVDAHTVEVN-------------------GETYTADHILIATG 140 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC-------------------CEEEEEEEEEECCC
T ss_conf 89999999999999999999999876896899706887268740359-------------------82985417999878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 43111011134555422124521113334443215654332100023210133310000000012222222122210012
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l 239 (481)
|+|+.|+ ++. .+.++||+++|+++++|++++|||||+||+|+|++|+++|++||++++.+++|+.+|+++++.+++.|
T Consensus 141 s~p~~p~-ipG-~e~~~tsd~~~~l~~lP~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l 218 (450)
T PRK06116 141 GRPSIPD-IPG-AEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEM 218 (450)
T ss_pred CCCCCCC-CCC-CCEEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHH
T ss_conf 9775899-988-11266144522545479779999996669999999996098489999448401204877779999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEEC
Q ss_conf 20123322100134420223431012440367402110232243057422000023222112357-32664248742302
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNV 318 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~ 318 (481)
++.||++++++.++++++++++. +.+...+| +++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||+
T Consensus 219 ~~~gi~i~~~~~v~~v~~~~~g~-~~v~~~~g--~~~~~d~vl~a~Gr~Pnt~~l~L~~~gv~l~~~G~I~vd~~~~Ts~ 295 (450)
T PRK06116 219 EKKGIQLHTNAVPKAVEKNADGS-LTLTLEDG--ETLTVDCLIWAIGREPNTDNLGLENTGVKLNEKGYIIVDEYQNTNV 295 (450)
T ss_pred HHCCCEEECCCEEEEEEECCCCC-EEEEECCC--CEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 86497896398899999859962-89998799--7999708999178420556567501476775788765787777788
Q ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCC--CEEEEEEEC
Q ss_conf 585883044455324441232025555430246644321223200245430334000149687610797--279999964
Q gi|254780675|r 319 PGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGL--DIRVGKHSF 396 (481)
Q Consensus 319 p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~--~~~~~~~~~ 396 (481)
|||||+|||+|+++|+|.|.+||+++++|+++..+..+.||..+|++|||+||+|+||+||+||++++. ++.+.+.+|
T Consensus 296 ~~IyA~GDv~g~~~lah~A~~~g~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~~~v~v~~~~~ 375 (450)
T PRK06116 296 PGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGDDNVKVYRSSF 375 (450)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEECC
T ss_conf 63375001468767668999999999999818999765256863368852640188878999999737997589999225
Q ss_pred CCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
Q ss_conf 6382332078982189999988998599999982998899999999998779778996388548778999999
Q gi|254780675|r 397 SANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKE 469 (481)
Q Consensus 397 ~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~ 469 (481)
..+.+++..+.+.||+|+++|+++++|||+|++|++|+|+||.+++||++++|+++|.+++|+|||+||.|.+
T Consensus 376 ~~~~~a~~~~~~~g~~Klv~d~~t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i~~hPT~sE~f~~ 448 (450)
T PRK06116 376 TPMYTALTGHRQPCLMKLVVDGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVT 448 (450)
T ss_pred CCHHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 7515563189886799999999979799999989999999999999998789899992367669862334642
No 20
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=0 Score=820.95 Aligned_cols=450 Identities=28% Similarity=0.428 Sum_probs=400.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HHHCCC
Q ss_conf 9864348999898579999999998799399997---------888862463256737088999999999998-421178
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE---------YAGLGGICLNWGCIPTKSLLRSAEILDHIQ-NAQHYG 70 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE---------k~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g 70 (481)
|+.+|||+|||+||||+.||++|+++|+||+||| |+.+||||+|+||||||+|+++++..+.++ +...+|
T Consensus 38 ~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~~~~~G 117 (541)
T PTZ00052 38 LTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLDSQMYG 117 (541)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78779989999788999999999988990999942455666871779501178362899999999999999975688658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 21348754499999999999999853446876301414210000011222210023687520013555543225863899
Q gi|254780675|r 71 LNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYK 150 (481)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (481)
+... .+.+||.++++++++.+.+++..++..+++.+|++++|+|+|+++++|+|...... ..+.+++
T Consensus 118 i~~~-~~~~d~~~l~~~~~~~i~~l~~~~~~~l~~~~V~~i~G~a~f~~~~tV~v~~~~~~------------g~~~~i~ 184 (541)
T PTZ00052 118 WKTS-SLSHEWGKLVETVQSHIRSLNFSYRTGLRSSNVKYINGLAKLKDPHTVEYYLKGDN------------SQEETIT 184 (541)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCC------------CCEEEEE
T ss_conf 3278-76316999999999999998888998887689689985899836987899842588------------8527999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 72455257543111011134555422124521113334443215654332100023210133310000000012222222
Q gi|254780675|r 151 AKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSE 230 (481)
Q Consensus 151 a~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~ 230 (481)
++++||||||+|..||.++.+.+.++||+++|+++++|+|++|||||+||+|||++|++||++||++.+ +++||.+|++
T Consensus 185 a~~iIIATGS~P~iP~~ipg~~~~~ltS~~~l~l~~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r-~~~L~~~D~d 263 (541)
T PTZ00052 185 SKYILIATGCRPHIPEDVEGAIELSITSDDIFSLKKSPGKTLVVGASYVALECAGFLNSLGFDVTVAVR-SIVLRGFDRQ 263 (541)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHH
T ss_conf 527998578887678887767630206532206534896289989869999999999975985899953-7767565777
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCC-E-EE
Q ss_conf 122210012201233221001344202234310124403674021102322430574220000232221123573-2-66
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSN-G-CI 308 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~-g-~i 308 (481)
+++.+++.|++.||++++++.++++++.++++.+++ .||+ +..+|.||+|+||+||+++|+||++||++++ | .|
T Consensus 264 i~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~--~dg~--~~~~d~vLvA~GR~Pnt~~LgLe~~Gv~~~~~G~~i 339 (541)
T PTZ00052 264 CAEKVKEYMEEQGVKFKVGVLPKKLEKVNDKIKVSF--SDGT--VELYDTVLYATGRKGDIKGLNLEALNVEVSKSGNKI 339 (541)
T ss_pred HHHHHHHHHHHCCCEEECCEEEEEEEECCCEEEEEE--CCCC--EEEEEEEEEECCCCCCCCCCCCHHCCEEECCCCCEE
T ss_conf 999999999850749974548999997398269997--6894--788128999226556457778422065887899889
Q ss_pred EECCCCEEECCCCEEECCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCC-
Q ss_conf 42487423025858830444-5532444123202555543024664432122320024543033400014968761079-
Q gi|254780675|r 309 IVDGYGRTNVPGIYAIGDVA-GAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQG- 386 (481)
Q Consensus 309 ~vd~~~qTs~p~IyA~GDv~-g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g- 386 (481)
.+|+++|||+|||||+|||+ |.|+|+|+|.+||++|++||++..+ .++||..||++|||+||+|+||+||+||++++
T Consensus 340 ~~d~~~~Ts~p~IyAiGDV~~G~p~Lah~A~~eg~vaa~~i~~g~~-~~~d~~~IP~vvfT~PEiA~VGlTEeeA~~~~~ 418 (541)
T PTZ00052 340 IPKDLSCTNVPSIFAVGDVAEGVPELAPVAIKAGEILARRLFKGSN-EIMDYDFIPTTIYTPIEYGACGYSEEKAYEKYG 418 (541)
T ss_pred EEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEECCCCEEEEECCHHHHHHHCC
T ss_conf 5133666777739995054689642489999999999999846999-655658998599758962668899999997368
Q ss_pred -CCEEEEEEECCCCHHHHCCC---------------CCCEEEEEEE-ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf -72799999646382332078---------------9821899999-889985999999829988999999999987797
Q gi|254780675|r 387 -LDIRVGKHSFSANGKAITLG---------------EDSGMIKTIF-NNKTGEVLGVHMVGPEVTELIQGFSIAMSLETT 449 (481)
Q Consensus 387 -~~~~~~~~~~~~~~~~~~~~---------------~~~G~~kiv~-~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t 449 (481)
.++++...+|...+.+.... ...||+|+++ ++++++|||+|++||+|+||||.+++||++++|
T Consensus 419 ~~~v~v~~~~f~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~rILG~hivGp~AsELI~e~alAm~~g~t 498 (541)
T PTZ00052 419 ESNVEVFLQEFNNLEISAVHREKHERAQKDEYDFDVSSTCLAKLVCLKSEDNRVVGFHYVGPNAGEVTQGMALALRLKAT 498 (541)
T ss_pred CCCEEEEEEECCCHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 88768987622550132100111011013432334456724999999289898999999869989999999999987999
Q ss_pred HHHHHCCCCCCCCHHHHHHH
Q ss_conf 78996388548778999999
Q gi|254780675|r 450 EEELMHTVFPHPTISETMKE 469 (481)
Q Consensus 450 ~~~l~~~~~~hPt~~E~l~~ 469 (481)
+++|++++|+|||+||+|.+
T Consensus 499 ~~dla~tih~HPTlSEa~~~ 518 (541)
T PTZ00052 499 KKDFDDCIGIHPTDAESFMN 518 (541)
T ss_pred HHHHHCCCCCCCCHHHHHHH
T ss_conf 99993186779987999986
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=810.31 Aligned_cols=434 Identities=27% Similarity=0.499 Sum_probs=394.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9864348999898579999999998799399997888--86246325673708899999999999842117821348754
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG--LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (481)
|. +|||+|||+||||+.||++|+++|++|+||||+. +||||+|+||||||+|++.++. .
T Consensus 1 M~-~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPsK~Li~~a~~------------------~ 61 (441)
T PRK08010 1 MN-KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------------------H 61 (441)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH------------------C
T ss_conf 99-7898999978899999999997899299997589987732456685888999999987------------------2
Q ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 499999999999999853-4468763014142100000112222100236875200135555432258638997245525
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLN-RGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIA 157 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIA 157 (481)
.|+...+++++..++.++ ..++.+++..+|++++|+|+|+++++++|...+ ++.+++++++|||
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~---------------g~~~l~a~~ivIA 126 (441)
T PRK08010 62 TDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPD---------------GNLEIHGEKIFIN 126 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCCCEEEECCC---------------CCEEEEEEEEEEE
T ss_conf 5799999879999999875539888542695899989998579823776489---------------9899982589993
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 75431110--1113455542212452111333444321565433210002321013331000000001222222212221
Q gi|254780675|r 158 TGARPRHI--EGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFV 235 (481)
Q Consensus 158 TGs~p~~~--~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~ 235 (481)
|||+|+.| |+++. ...++||+++++++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+
T Consensus 127 TGs~p~~p~ipg~~~-~~~v~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il~~~D~~~~~~l 205 (441)
T PRK08010 127 TGAQSVVPPIPGITT-TPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNI 205 (441)
T ss_pred CCCCCCCCCCCCCCC-CCEEECHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 377654555687578-7539850785252116967999898589999999999759878897046732663114689999
Q ss_pred CHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCC
Q ss_conf 001220123322100134420223431012440367402110232243057422000023222112357-3266424874
Q gi|254780675|r 236 QRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYG 314 (481)
Q Consensus 236 ~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~ 314 (481)
++.|+++||++++++.+++++++++.+.++ ..++ ++++|.||+|+||+||++.|+|+++||+++ +|+|.||++|
T Consensus 206 ~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~--~~~~---~~~~d~vlva~Gr~Pn~~~L~le~~gv~~~~~G~I~Vd~~~ 280 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHENQVQVH--SEHA---QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280 (441)
T ss_pred HHHHHHCCEEEECCCEEEEEEECCCEEEEE--ECCC---EEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCEEECCCC
T ss_conf 999987885997386799999539989999--7686---78664899944766554445603228535788988668988
Q ss_pred EEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEE
Q ss_conf 23025858830444553244412320255554302466443212232002454303340001496876107972799999
Q gi|254780675|r 315 RTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKH 394 (481)
Q Consensus 315 qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~ 394 (481)
|||.|||||+|||+|+++|+|+|.+||+++++|+++..+....||..+|+++||+||+|+||+||+||+++|++|++.++
T Consensus 281 ~Ts~~~IyA~GDv~g~~~lah~A~~e~~~~~~~i~~~~~~~~~~~~~vP~~vft~PeiA~VGlte~~a~~~G~~~~~~~~ 360 (441)
T PRK08010 281 HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL 360 (441)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEE
T ss_conf 73887689970268986763689999999999983679975454456624761376327886899999865998899999
Q ss_pred ECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 64638233207898218999998899859999998299889999999999877977899638854877899999999987
Q gi|254780675|r 395 SFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDA 474 (481)
Q Consensus 395 ~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~ 474 (481)
+|..++|++++++++||+|+++|+++++|||+|++|++|+||||.+++||++++|+++|++++|+|||+||+|+++++.+
T Consensus 361 ~~~~~~ra~~~~~~~G~~Klv~d~~t~~ILGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~HPTlsE~l~e~~~~~ 440 (441)
T PRK08010 361 PVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV 440 (441)
T ss_pred ECCCCCHHEECCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 87767242341898389999999996989999998999899999999999878989999317777987489999999842
No 22
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=784.74 Aligned_cols=430 Identities=30% Similarity=0.504 Sum_probs=396.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 64348999898579999999998799399997888--8624632567370889999999999984211782134875449
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG--LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
++|||+||||||||++||++++++|+||+|||++. +||||+|+||||||+|+++++ ..++
T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPsk~ll~~a~------------------~~~~ 63 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPTKTLLVAAE------------------KNLS 63 (438)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH------------------CCCC
T ss_conf 9558799997889999999999788949999469987685547787040157898766------------------2799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
|++++.+++....+++.....+++..+|+++.|+++|.++++++|...+. ..+++|+++||||||
T Consensus 64 ~~~~~~~k~~~~~~l~~~~~~~~~~~gv~~~~g~a~~~~~~~v~V~~~~~---------------~~~~~a~~iIIATGs 128 (438)
T PRK07251 64 FEEVMATKNTVTSRLNAKNYAMLAGTGVDIYDAEAHFVSNKVIEVTAGDE---------------KQELTAETIVINTGA 128 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCC---------------EEEEEEEEEEECCCC
T ss_conf 99999999999999988999999748948999799981684899955997---------------299997689872678
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 311101--113455542212452111333444321565433210002321013331000000001222222212221001
Q gi|254780675|r 161 RPRHIE--GIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238 (481)
Q Consensus 161 ~p~~~~--g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 238 (481)
+|+.|| |+. +.+.++++++++++.++|++++|||||++|+|+|++|+++|++||++++.+++|+.+|+++++.+++.
T Consensus 129 ~p~~l~ipG~~-d~~~v~~s~~~~~l~~~p~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 207 (438)
T PRK07251 129 VSNVLPIPGLA-DSKHVYDSTGIQNLEKLPKRLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFLPREEPSIAALAKQY 207 (438)
T ss_pred CCCCCCCCCCC-CCCEEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 78669988656-87569801787646537976999888645889999998348768999846100244463668999999
Q ss_pred HHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEE
Q ss_conf 220123322100134420223431012440367402110232243057422000023222112357-3266424874230
Q gi|254780675|r 239 LQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTN 317 (481)
Q Consensus 239 l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs 317 (481)
|++.||++++++++++++.+++.+.+..+ + +++++|.||+|+||+||++.|+|+++||+++ +|+|.||++||||
T Consensus 208 l~~~gv~i~~~~~v~~v~~~~~~~~v~~~---~--~~~~~d~vl~a~Gr~Pnt~~l~le~~gi~~~~~G~I~vd~~~rTs 282 (438)
T PRK07251 208 MEEDGIEFLQNAHTTEVKNDGDQVVVVTE---D--ETYRFDALLYATGRKPNTEPLQLENTDIELTERGAIKVDKHCQTS 282 (438)
T ss_pred HHHCCCEEEECCEEEEEEECCCEEEEEEE---C--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 98669599968879999956997999982---7--789861899925876666656741147442789978018977667
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC
Q ss_conf 25858830444553244412320255554302466443212232002454303340001496876107972799999646
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS 397 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~ 397 (481)
+|||||+|||+|+++|+|+|.+||+++++++++.......+|..+|+++||+||+|+||+||+||+++|++|++.+++|.
T Consensus 283 ~~~IyA~GDv~g~~~l~~~A~~~~~~~~~~~~g~~~~~~~~~~~vP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~ 362 (438)
T PRK07251 283 VPGVFAVGDVNGGLQFTYISLDDFRIVFSYLTGDGSYTLEDRGNVPTSMFITPPLSQVGLTEKQAKEAGLPYAVKELPVA 362 (438)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECC
T ss_conf 86299922557886773688999999999970899875455556655897277669997889999866997799999877
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 38233207898218999998899859999998299889999999999877977899638854877899999999
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESI 471 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~ 471 (481)
.++|+++.++++||+|+++|+++++|||+|++|++|+||||.+++||++++|+++|++++|+|||+||.|++++
T Consensus 363 ~~~ra~~~~~~~G~~Kli~d~~~~~IlGa~ivg~~A~elI~~~~lai~~~~t~~dl~~~i~~hPT~sE~l~e~f 436 (438)
T PRK07251 363 AMPRGHVNNDLRGAFKAVVNTETKEILGATLFGAGSHEIINIITMAMDNKIPYTYFTKQIFTHPTMAENLNDLF 436 (438)
T ss_pred CCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 58466447987089999999996989999998999899999999999883989999405777986475876876
No 23
>KOG1335 consensus
Probab=100.00 E-value=0 Score=783.31 Aligned_cols=462 Identities=41% Similarity=0.664 Sum_probs=437.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHH--HHCCCCCCCCCCCC
Q ss_conf 643489998985799999999987993999978-888624632567370889999999999984--21178213487544
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQN--AQHYGLNVAGKVEF 79 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~g~~~~~~~~~ 79 (481)
..|||+|||+||+|+.||++++++|++++.||+ +.+||||+|+||||||+|++.|+.++.+++ ...+|+++. .+.+
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs-~~~~ 116 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVS-SVSL 116 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEC
T ss_conf 667889987787258999999871541688731575365456436335388763337899887668986093113-2004
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999999853446876301414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
|++.+++.+++.++++..+++.++++++|+++.|++.|.+|++|++...++. ..+++++++|||||
T Consensus 117 dl~~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~v~k~dg~--------------~~ii~aKnIiiATG 182 (506)
T KOG1335 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGE--------------DQIIKAKNIIIATG 182 (506)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCC--------------CEEEEEEEEEEECC
T ss_conf 7899998777789997668998876348389951376538746888535897--------------33786316999617
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 43111011134555422124521113334443215654332100023210133310000000012222222122210012
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l 239 (481)
|.-.+.||++.|++.+.+|+.+|+|+++|++++|||+|+||+||++.|+|||++||++|..+++.+.+|.++++.+++.|
T Consensus 183 SeV~~~PGI~IDekkIVSStgALsL~~VPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L 262 (506)
T KOG1335 183 SEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVL 262 (506)
T ss_pred CCCCCCCCEEECCCEEEECCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHH
T ss_conf 75677897576376687147734331175157997474566554668876377179998443444655889999999999
Q ss_pred HHCCCCCCCCHHHHHHCCCCC-CCCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEE
Q ss_conf 201233221001344202234-31012440-367402110232243057422000023222112357-326642487423
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGD-MVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRT 316 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~-~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qT 316 (481)
.+.|+.|++++.++.++++++ .+.+++++ .+++.++++||.+|+++||+|.|++|+||+.|++.| ++.+.||+++||
T Consensus 263 ~kQgi~F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t 342 (506)
T KOG1335 263 QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT 342 (506)
T ss_pred HHCCCEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCEECCCCCCC
T ss_conf 86382367232788751068885799997557785068884289998066445466880430655365664002650134
Q ss_pred ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEEC
Q ss_conf 02585883044455324441232025555430246644321223200245430334000149687610797279999964
Q gi|254780675|r 317 NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSF 396 (481)
Q Consensus 317 s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~ 396 (481)
.+||||++|||+.+|||+|.|..||..+.+.|.+.. ...||.++|+++||+||+|+||+||+|+++.|+.|+++++||
T Consensus 343 ~vP~i~~IGDv~~gpMLAhkAe~egI~~VE~i~g~~--~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~ykvgkfpF 420 (506)
T KOG1335 343 KVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH--GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPF 420 (506)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCHHHEEEECCCC--CCCCCCCCCCEEECCCCEEEECCCHHHHHHCCCCEEEEEECC
T ss_conf 588458832567741431010241422300004667--556567887235316731352255566876585347631000
Q ss_pred CCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 63823320789821899999889985999999829988999999999987797789963885487789999999998708
Q gi|254780675|r 397 SANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYG 476 (481)
Q Consensus 397 ~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~~~ 476 (481)
+.+.|+.++.+.+||+|+++|++|++|||+||+||+|+|||+.+++||.++.+++|+++.+|+|||+||+|+||.+-++.
T Consensus 421 ~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~ 500 (506)
T KOG1335 421 SANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD 500 (506)
T ss_pred CCCCHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 03421102577663058986278882788886269778899998998871864777864457898478999999988650
Q ss_pred -CCCCC
Q ss_conf -86659
Q gi|254780675|r 477 -RAIHS 481 (481)
Q Consensus 477 -~~~~~ 481 (481)
|+||-
T Consensus 501 ~k~Ih~ 506 (506)
T KOG1335 501 GKPIHF 506 (506)
T ss_pred CCCCCC
T ss_conf 687789
No 24
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=0 Score=770.73 Aligned_cols=452 Identities=32% Similarity=0.506 Sum_probs=418.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HHHCCCCCCC----C-C
Q ss_conf 64348999898579999999998799399997888862463256737088999999999998-4211782134----8-7
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQ-NAQHYGLNVA----G-K 76 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g~~~~----~-~ 76 (481)
++||++|||||++|++.|.||++.|+|++|||...|||||+|+||||+|.||++|.+.+.++ ....||+... . .
T Consensus 1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld~~~ 80 (475)
T TIGR01421 1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLDKEN 80 (475)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 97546998368615788898885076078762000488068501137623200567778875221027854336410036
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 544999999999999998534468763014142100000112222--100236875200135555432258638997245
Q gi|254780675|r 77 VEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS--EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHI 154 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 154 (481)
..|+|+.+.+.++.++++++..++..|++++||+|+|+|+|++.+ +|+|+..+.. ...|+|.||
T Consensus 81 l~F~f~~l~~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nt--------------tevy~A~HI 146 (475)
T TIGR01421 81 LKFNFKELKEKRDAYVDRLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENT--------------TEVYTAPHI 146 (475)
T ss_pred CEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCC--------------EEEEECCEE
T ss_conf 600779998766789999888752486505543898678874888963477364243--------------025762705
Q ss_pred EECCCCCCCCC--CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 52575431110--1113455542212452111333444321565433210002321013331000000001222222212
Q gi|254780675|r 155 IIATGARPRHI--EGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEIS 232 (481)
Q Consensus 155 vIATGs~p~~~--~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~ 232 (481)
+||||++|..| ..+| ..++..+||++|.|+++|+|++|||+||||+|||.+|+.||++.+|+-|++++|+.||.-++
T Consensus 147 liATGG~p~~phe~~IP-G~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~~i~ 225 (475)
T TIGR01421 147 LIATGGKPSIPHEENIP-GAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDSMIS 225 (475)
T ss_pred EEECCCCCCCCCCCCCC-CCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 89448724787546778-40105770020022017871799907389888888873126402257736736674014664
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCC--CCEEEEECCCC----EEEEECCCEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf 22100122012332210013442022343--10124403674----02110232243057422000023222112357-3
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDM--VSVQVERKDGS----VSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-N 305 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~--~~v~~~~~dG~----~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~ 305 (481)
+.+.+.|++.|+++|..+.+.+|+++-++ ..+++++..|. .....+|.||||+||+||+++|+||++||++| +
T Consensus 226 ~~~~~~~~~~G~~vh~~~~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR~Pn~~~L~le~~gv~ld~k 305 (475)
T TIGR01421 226 EKVVEEYEKEGLEVHKLSKPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWAIGRKPNTKGLGLEKVGVKLDEK 305 (475)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCC
T ss_conf 26689999679602156604799841578647999966888653102343056787405885673554421321256688
Q ss_pred EEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCEEEEEEEHHHEEECCCHHHHH
Q ss_conf 26642487423025858830444553244412320255554302466--4432122320024543033400014968761
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKS--KVYPLDKSKIPGCTYCNPQVASIGLTEEKAR 383 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~--~~~~~d~~~ip~~vft~P~ia~vG~te~ea~ 383 (481)
|+|+||+|+-|+++||||+|||+|...|+|+|..-||.+++++|+.. ....+||.+||+||||||++++||+||+||-
T Consensus 306 g~i~vDeyQNT~v~gIYAlGDV~Gk~~LTPVAIaAGR~LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~Ai 385 (475)
T TIGR01421 306 GYIIVDEYQNTNVEGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEAI 385 (475)
T ss_pred CCEEEECCCCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 73887441067318858722268110077378773036787636873000134650248803873778430037878999
Q ss_pred C-CCCC-EEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf 0-7972-7999996463823320789821899999889985999999829988999999999987797789963885487
Q gi|254780675|r 384 S-QGLD-IRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHP 461 (481)
Q Consensus 384 ~-~g~~-~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hP 461 (481)
+ +|.| ++++...|++.+.|........-+|||+-..+.+|+|-|++|.+.+||+|.|++||++|.|--|+-.++-+||
T Consensus 386 ~~YG~e~vKvY~ssFt~MY~A~~~~k~~~~~Klvcag~eEKvVGLH~~G~g~dEmLQGFAVAiKMGATKADFDntVAIHP 465 (475)
T TIGR01421 386 EKYGKENVKVYKSSFTPMYYALTKEKQKCRMKLVCAGKEEKVVGLHGIGLGVDEMLQGFAVAIKMGATKADFDNTVAIHP 465 (475)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCEEECCC
T ss_conf 86087544374046425788872688866517897389866787742045223323114024334785454157000077
Q ss_pred CHHHHHHH
Q ss_conf 78999999
Q gi|254780675|r 462 TISETMKE 469 (481)
Q Consensus 462 t~~E~l~~ 469 (481)
|-||.|-+
T Consensus 466 TsSEElVT 473 (475)
T TIGR01421 466 TSSEELVT 473 (475)
T ss_pred CCCCHHCC
T ss_conf 76000002
No 25
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=0 Score=756.92 Aligned_cols=452 Identities=32% Similarity=0.533 Sum_probs=417.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----------CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64348999898579999999998799399997888----------86246325673708899999999999842117821
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG----------LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLN 72 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~----------~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 72 (481)
..||+-|||||++|+.||+.+|..|+||+|.|... +||||+=|||||+|.|+|+|++..+++.+..|||.
T Consensus 1 yDyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~ledA~gYGW~ 80 (478)
T TIGR01424 1 YDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEELEDAKGYGWT 80 (478)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCE
T ss_conf 97630687067166899999987299089821567873512237746747882440750357212230233555248846
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf 34875449999999999999985344687630141421000001122221002368752001355554322586-38997
Q gi|254780675|r 73 VAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGE-GTYKA 151 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~a 151 (481)
+-++.+|||+++++.++..+.||+.-+...|++++++++.|+|+++|+|+|+|...++.. ++. -+|+|
T Consensus 81 i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~tVev~~~dGsd-----------dg~ki~yTA 149 (478)
T TIGR01424 81 IVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNTVEVLEKDGSD-----------DGKKITYTA 149 (478)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCEEEEEEECCCC-----------CCCEEEEEE
T ss_conf 872111577898765778888666888998885330443043378368157974103787-----------883167877
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 24552575431110111345554221245211133344432156543321000232101333100000000122222221
Q gi|254780675|r 152 KHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEI 231 (481)
Q Consensus 152 ~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~ 231 (481)
++|+||||+||..-|.+| ..++.+||+++|+|+.+||+++|+||||||+|||++|+-||++|||+.|++.+|++||+|+
T Consensus 150 ~kIliA~Ggrps~kP~lP-G~ElgITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~ 228 (478)
T TIGR01424 150 KKILIAVGGRPSVKPELP-GHELGITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDDDM 228 (478)
T ss_pred EEEEEEECCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 599998778787888856-8521304132417200554689986760012022232367832523451665467686899
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCC-CC----
Q ss_conf 222100122012332210013442022343-101244036740211023224305742200002322211235-73----
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKT-SN---- 305 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~-~~---- 305 (481)
+..+++.|+++||+|+....+++|++.+++ ..++....++ .++.+|.|++|+||.||+++||||++||++ +.
T Consensus 229 R~~~~~~le~~Gi~i~~~~~~~~i~~~~~GR~~~~~sGe~~--~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sieG 306 (478)
T TIGR01424 229 RAELAEELEERGIRIVPKDSVTSIEKVDDGRLKVTLSGEKD--EEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIEG 306 (478)
T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEEECCCC--CCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCC
T ss_conf 99999987529738950104436420789878999746899--8165433232008877657636101150651010147
Q ss_pred ------EEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCH
Q ss_conf ------26642487423025858830444553244412320255554302466443212232002454303340001496
Q gi|254780675|r 306 ------GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTE 379 (481)
Q Consensus 306 ------g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te 379 (481)
|.|.||+|-|||.|+|||+|||+++.+|+|+|.+||.-=|+.-++.+++ .+||..|.+.||+.||++.|||||
T Consensus 307 PGystmgAi~Vd~YS~T~~P~IyAvGDvTdRinLTPVAi~Ea~aFa~teF~gnpt-~~~h~~vA~AVFS~P~~~~vGlsE 385 (478)
T TIGR01424 307 PGYSTMGAIAVDEYSRTSVPSIYAVGDVTDRINLTPVAIREAAAFAETEFGGNPT-EFDHDLVATAVFSQPPVGTVGLSE 385 (478)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEECCCCCCEEECCH
T ss_conf 8744125366515467885777886031254457847887647776454177898-867021336330588711110677
Q ss_pred HHHHCCC-CCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 8761079-727999996463823320789821899999889985999999829988999999999987797789963885
Q gi|254780675|r 380 EKARSQG-LDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVF 458 (481)
Q Consensus 380 ~ea~~~g-~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~ 458 (481)
+||+++- .++.+.+..|.+.-..+.=++.+-++|||+|.+++||||||++||+|.||||.++.|+++|.|..|+-.++-
T Consensus 386 ~EA~~~~~~~i~vy~a~FrPMk~t~~G~qEk~lmKLvV~~~~~kv~Gah~~G~dAaEi~Q~~AIAlk~G~TK~~FD~T~a 465 (478)
T TIGR01424 386 EEAREKFTGDIEVYRAEFRPMKATFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGVAIALKMGATKKDFDSTVA 465 (478)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCE
T ss_conf 99998817918999827877433113873368888764477873889887379848999999999846887321548110
Q ss_pred CCCCHHHHHHH
Q ss_conf 48778999999
Q gi|254780675|r 459 PHPTISETMKE 469 (481)
Q Consensus 459 ~hPt~~E~l~~ 469 (481)
.|||.+|.|-+
T Consensus 466 vHPs~AEElVT 476 (478)
T TIGR01424 466 VHPSSAEELVT 476 (478)
T ss_pred ECCCCHHHHCC
T ss_conf 06661321113
No 26
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=681.29 Aligned_cols=455 Identities=27% Similarity=0.452 Sum_probs=408.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HHHCCCCC
Q ss_conf 64348999898579999999998799399997---------888862463256737088999999999998-42117821
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE---------YAGLGGICLNWGCIPTKSLLRSAEILDHIQ-NAQHYGLN 72 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE---------k~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g~~ 72 (481)
.+||++||||||+||+||.+||++|++|+|+| ++.+||||+|+||||+|.|.++|.+-..++ ++..|||.
T Consensus 1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPKKLMHqAa~~G~~lklds~~YGWn 80 (513)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPKKLMHQAALLGKALKLDSKKYGWN 80 (513)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96427998589734689999986099189996335698882147675357505548356788888768875535651888
Q ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3487--54499999999999999853446876301414210000011222210023687520013555543225863899
Q gi|254780675|r 73 VAGK--VEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYK 150 (481)
Q Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (481)
...+ +..||+.+.+.+++++..++..++-.|+..+|+++.++|+|+|++.+.|...+.. ....+..++
T Consensus 81 ~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~kG----------d~~ke~~~s 150 (513)
T TIGR01438 81 VEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATDKG----------DKKKEEILS 150 (513)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEECC----------CCCCCEEEE
T ss_conf 5366432223789999886455540032000010154026630024427846899986067----------876320450
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 72455257543111011134555422124521113334443215654332100023210133310000000012222222
Q gi|254780675|r 151 AKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSE 230 (481)
Q Consensus 151 a~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~ 230 (481)
|++++||||-||+.|..++.+.++.+||||+|+|.+.|.+.+||||||+|+|+|.||+.+|.+||++.| +=+|++||++
T Consensus 151 a~~~lIaTG~RP~yp~~ipGaKEl~ItSDDlFsL~~~PGKTLvVGasYVALECaGFL~~~g~dV~V~VR-SI~LrGFDqd 229 (513)
T TIGR01438 151 AKRVLIATGLRPKYPDDIPGAKELSITSDDLFSLKKVPGKTLVVGASYVALECAGFLAALGLDVTVLVR-SILLRGFDQD 229 (513)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCHH
T ss_conf 363698047888888888884011013012203668868657877614235778898633996499998-8523475778
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCC------CCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 122210012201233221001344202234------31012440367402110232243057422000023222112357
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGD------MVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS 304 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~------~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~ 304 (481)
++..++.+|++.||.|..+..+.++++-++ .+.+++++.+|++.+=+.|+||||+||.|+++.||||++|++++
T Consensus 230 ca~kv~ehm~e~Gvkfk~~~~p~kve~~~~GtPGrlk~~v~ftD~~G~~~~eeYdTVl~AiGR~~~~~~lnLen~gv~~n 309 (513)
T TIGR01438 230 CAVKVKEHMKEQGVKFKEQVVPKKVEKVDSGTPGRLKVLVKFTDKDGNTIEEEYDTVLYAIGRKADLKKLNLENVGVKVN 309 (513)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf 99999988640896887014678766515889951789999845788744423011566625876644316321320761
Q ss_pred C--EEEEECCCCEEECCCCEEECCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHH
Q ss_conf 3--26642487423025858830444-55324441232025555430246644321223200245430334000149687
Q gi|254780675|r 305 N--GCIIVDGYGRTNVPGIYAIGDVA-GAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEK 381 (481)
Q Consensus 305 ~--g~i~vd~~~qTs~p~IyA~GDv~-g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~e 381 (481)
+ |-|.+|+.-|||+|.|||+||+. +.+.|+|+|.+.|++.|++++.... ..+||..||++|||..|++++|+||++
T Consensus 310 k~~gKI~ade~~~tn~p~iyAvGDi~e~~~ELtPvAIqaG~lLA~RLf~~S~-~i~dy~~vpTtvfTPlEyg~cGlsEEk 388 (513)
T TIGR01438 310 KKSGKILADELERTNVPSIYAVGDIVEDKLELTPVAIQAGKLLADRLFKDSK-EIVDYENVPTTVFTPLEYGACGLSEEK 388 (513)
T ss_pred CCCCCEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-EEEEECCCCCEEECCHHHCCCCCCHHH
T ss_conf 5578775032335788827886456548655543778877999987414882-688426778414441341236765789
Q ss_pred HHCC-CC-CEEEEEEECCCCHHHHCCCC---------------CCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 6107-97-27999996463823320789---------------82189999988-9985999999829988999999999
Q gi|254780675|r 382 ARSQ-GL-DIRVGKHSFSANGKAITLGE---------------DSGMIKTIFNN-KTGEVLGVHMVGPEVTELIQGFSIA 443 (481)
Q Consensus 382 a~~~-g~-~~~~~~~~~~~~~~~~~~~~---------------~~G~~kiv~~~-~~~~ilG~~~~g~~A~eli~~~~~a 443 (481)
|-+. |- +++|....|.+.......++ ..+++|+|+.+ ++.||||-|.+||+|+|++|.+|+|
T Consensus 389 A~ek~Ge~nvEVfhs~F~plE~~~p~r~~~iraqkdeydldvs~~CyaK~VC~~~e~~rv~GfH~vGPNAgEV~QG~A~A 468 (513)
T TIGR01438 389 AVEKYGEENVEVFHSEFTPLEYSVPSRKDSIRAQKDEYDLDVSSKCYAKVVCLKDEDERVVGFHFVGPNAGEVTQGYAVA 468 (513)
T ss_pred HHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 99873985079972013650489753566310123211222268514999832146872799975377625788898878
Q ss_pred HHCCCCHHHHHCCCCCCCCHHHHHHH
Q ss_conf 98779778996388548778999999
Q gi|254780675|r 444 MSLETTEEELMHTVFPHPTISETMKE 469 (481)
Q Consensus 444 i~~~~t~~~l~~~~~~hPt~~E~l~~ 469 (481)
++-|++-+||..+|-+||+-+|.|-+
T Consensus 469 lr~g~~k~dldntIgIHP~~aE~F~~ 494 (513)
T TIGR01438 469 LRVGVKKKDLDNTIGIHPVSAEEFVK 494 (513)
T ss_pred HHCCCCHHHHCCCCEECCCCHHCEEE
T ss_conf 75476146620623005677100005
No 27
>KOG0405 consensus
Probab=100.00 E-value=0 Score=669.54 Aligned_cols=449 Identities=32% Similarity=0.519 Sum_probs=414.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 86434899989857999999999879939999788-88624632567370889999999999984211782134875449
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
++.||++|||||.+|+.+|+++++.|.||.|+|.. .+||||+|+||+|+|.||++|...+.++.+..||+.......||
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 44236699847861367767787538537998637786744786045641367744455677545664298534446776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
|..+.+.++.++.|++.-++..+.+.+|+++.|+|+|.+|++|+|...++.. ..|++++++||||+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~--------------~~Ytak~iLIAtGg 163 (478)
T KOG0405 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTK--------------IVYTAKHILIATGG 163 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCEE--------------EEEECCEEEEEECC
T ss_conf 7998751168999887898854231540699626787589944799538815--------------78721408997378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 31110111345554221245211133344432156543321000232101333100000000122222221222100122
Q gi|254780675|r 161 RPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 (481)
Q Consensus 161 ~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 240 (481)
+|..| .++ ..++.++||.+|+|++.|+|++|+|+||||+|||.+|+.||++++|+-|.+.+|+.||+.+++.+.+.|+
T Consensus 164 ~p~~P-nIp-G~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~ 241 (478)
T KOG0405 164 RPIIP-NIP-GAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLE 241 (478)
T ss_pred CCCCC-CCC-CHHHCCCCCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHHHHHHH
T ss_conf 46789-998-5231416642314111685179974645887755577534870379996121330341888988998764
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECC
Q ss_conf 0123322100134420223431012440367402110232243057422000023222112357-326642487423025
Q gi|254780675|r 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVP 319 (481)
Q Consensus 241 ~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p 319 (481)
..||++|.++.++++.+++++........+ ..-.+|.++||+||.||+.+|+||++|++++ .|.|+||+|.+||+|
T Consensus 242 ~~ginvh~~s~~~~v~K~~~g~~~~i~~~~---~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp 318 (478)
T KOG0405 242 GRGINVHKNSSVTKVIKTDDGLELVITSHG---TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVP 318 (478)
T ss_pred HCCEEECCCCCCEEEEECCCCCEEEEEECC---CCCCCCEEEEEECCCCCCCCCCCHHCCEEECCCCCEEEECCCCCCCC
T ss_conf 045264145540235652787258997246---04035479987157877455662210306678898897422247887
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCC--CCEEEEEEECC
Q ss_conf 8588304445532444123202555543024664432122320024543033400014968761079--72799999646
Q gi|254780675|r 320 GIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQG--LDIRVGKHSFS 397 (481)
Q Consensus 320 ~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g--~~~~~~~~~~~ 397 (481)
+|||+||++|+..|+++|.++|+..++.+++..+-...||.++|.+||++|+++.||+||+||-+++ -++++++..|.
T Consensus 319 ~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~ 398 (478)
T KOG0405 319 SIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFN 398 (478)
T ss_pred CEEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf 25873033384743018876402677776168988866602386689705875312577799998727565589824774
Q ss_pred CCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
Q ss_conf 382332078982189999988998599999982998899999999998779778996388548778999999
Q gi|254780675|r 398 ANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKE 469 (481)
Q Consensus 398 ~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~ 469 (481)
....++......-++|+|+...+.+++|+|++|+++.|++|.+++|+++|.|..|+..++-.|||-+|.|-.
T Consensus 399 pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVT 470 (478)
T KOG0405 399 PMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVT 470 (478)
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHCCCEEECCCCHHHHEE
T ss_conf 267676368764279999966877178999745984899733441100275443104512346777788231
No 28
>KOG4716 consensus
Probab=100.00 E-value=0 Score=599.69 Aligned_cols=451 Identities=29% Similarity=0.462 Sum_probs=405.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 864348999898579999999998799399997---------88886246325673708899999999999842117821
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE---------YAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLN 72 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE---------k~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 72 (481)
|..||++|||||++|++||.+++..|++|+++| ++.+||||+|+||||+|.|..+|-+-+.++++..|||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 47744799868851366779988608707999612457888745558546653653189888888777887778862877
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 348-7544999999999999998534468763014142100000112222100236875200135555432258638997
Q gi|254780675|r 73 VAG-KVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKA 151 (481)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a 151 (481)
+.. ++..||..+.+.+++++..+++.++..|+...|+++..+|+|++++++......++ +..++|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk--------------~~~~ta 162 (503)
T KOG4716 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGK--------------ERFLTA 162 (503)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCC--------------EEEEEC
T ss_conf 762335546899999998776623525898731010135602145426625898547784--------------578614
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 24552575431110111345554221245211133344432156543321000232101333100000000122222221
Q gi|254780675|r 152 KHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEI 231 (481)
Q Consensus 152 ~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~ 231 (481)
+++|||||.||+.| +++.+.++.+||||+|++...|.+.+|||+||+++|+|.+|+.||-+||++.| +-+|++||+++
T Consensus 163 ~~fvIatG~RPrYp-~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVR-SI~LrGFDqdm 240 (503)
T KOG4716 163 ENFVIATGLRPRYP-DIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVR-SILLRGFDQDM 240 (503)
T ss_pred CEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCEEEEE-EEECCCCCHHH
T ss_conf 53899726877899-99984252112332105568999448974513454213567533888579998-74102526999
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEEC-CCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC--CEE
Q ss_conf 222100122012332210013442022343-10124403-67402110232243057422000023222112357--326
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERK-DGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS--NGC 307 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~-dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~--~g~ 307 (481)
++.+.++|++.||+|+..+.+.++++.+++ .+|.+... .++.-+-+.|.|+||+||.|++++|||+++|++.+ .|.
T Consensus 241 ae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~K 320 (503)
T KOG4716 241 AELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGK 320 (503)
T ss_pred HHHHHHHHHHHCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 99999999970973340335301022047727999612556644410223203122451101003887533253244786
Q ss_pred EEECCCCEEECCCCEEECCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCC-
Q ss_conf 642487423025858830444-553244412320255554302466443212232002454303340001496876107-
Q gi|254780675|r 308 IIVDGYGRTNVPGIYAIGDVA-GAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQ- 385 (481)
Q Consensus 308 i~vd~~~qTs~p~IyA~GDv~-g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~- 385 (481)
|.+|+.-+||+|+|||+||+. +.|.|+++|.+.|++.|+++++... +.+||..+|++|||..|++++|++|++|.+.
T Consensus 321 I~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~-q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~ 399 (503)
T KOG4716 321 IPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGST-QLMDYDDVATTVFTPLEYGCVGLSEEDAIEKY 399 (503)
T ss_pred CCCCHHHHCCCCCEEEECCEECCCCCCCHHHHHHCHHHHHHHHCCCC-EEEECCCCCEEEECCHHCCCCCCCHHHHHHHH
T ss_conf 44576773578716885000069865652543535699998746861-56412677603534300023577778999871
Q ss_pred C-CCEEEEEEECCCCHHHHCCC-CCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf 9-72799999646382332078-982189999988-99859999998299889999999999877977899638854877
Q gi|254780675|r 386 G-LDIRVGKHSFSANGKAITLG-EDSGMIKTIFNN-KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPT 462 (481)
Q Consensus 386 g-~~~~~~~~~~~~~~~~~~~~-~~~G~~kiv~~~-~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt 462 (481)
| .++++.+..|.+....+... ....++|.|+++ ++.+|+|-|++||+|+|+||.++.|++.++|..+|.+++-.|||
T Consensus 400 g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt 479 (503)
T KOG4716 400 GEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPT 479 (503)
T ss_pred CCCCEEEEECCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
T ss_conf 86537971103464388755566771688775313687248989974686367778899999825539877521460665
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254780675|r 463 ISETMKE 469 (481)
Q Consensus 463 ~~E~l~~ 469 (481)
.+|.+..
T Consensus 480 ~aE~Ft~ 486 (503)
T KOG4716 480 TAEEFTT 486 (503)
T ss_pred CHHHEEE
T ss_conf 3433268
No 29
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=525.11 Aligned_cols=404 Identities=27% Similarity=0.382 Sum_probs=305.0
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC--CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 899989857999999999879--93999978888--62463256737088999999999998421178213487544999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGL--GGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~--GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
|+|||+||||++||.++++.+ .+|+++|+... .+.| |+|. .+ .+... +..
T Consensus 3 vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp~-----------~~----------~~~~~-~~~ 56 (443)
T PRK09564 3 IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLPY-----------FV----------GGFFD-DPN 56 (443)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHHH-----------HH----------CCCCC-CHH
T ss_conf 9999960999999999981493999999948898777655----2034-----------44----------05558-989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 999999999998534468763014142100000-112--22210023687520013555543225863899724552575
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKA-TLK--NPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a-~f~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
.+..+.. ..+.+.++++..++. .-+ +.+++.+..... ....++++|++|||||
T Consensus 57 ~~~~~~~-----------~~~~~~gi~~~~~~~v~~id~~~k~v~~~~~~~-------------~~~~~~~yD~LiiATG 112 (443)
T PRK09564 57 NMIARTP-----------EEFIKSGIDVKTEHEVVKVDFKNKTITVKNLKT-------------GSIFNDTYDKLMIATG 112 (443)
T ss_pred HHHHHCH-----------HHHHHCCCEEEECCEEEEEECCCCEEEEEECCC-------------CCEEECCCCEEEEECC
T ss_conf 9874199-----------999987999993888999974686489984687-------------6166134678999616
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCEECC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-CCCCC
Q ss_conf 43111011134555422124---521113-----3344432156543321000232101333100000000122-22222
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYF---DALKPS-----KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDSE 230 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~---~~l~l~-----~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-~~d~~ 230 (481)
|+|+.||....+.+.+++.+ |+..+. .-||+++|||||+||+|+|++|+++|++||++++.+++|+ .+|++
T Consensus 113 s~p~~p~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~ 192 (443)
T PRK09564 113 ARPIIPPIKNINLENVYTLRSMEDGLALKKLLKKKEIKRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKE 192 (443)
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHH
T ss_conf 75236998875666656765789999999976512796599999709999999999866988999995783455667899
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 12221001220123322100134420223431012440367402110232243057422000023222112357326642
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIV 310 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~v 310 (481)
+++.+++.|++.||++++++.+++++.+++...+.. .+ .++++|.||+|+||+||++.| +......++|+|.|
T Consensus 193 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~---~~i~~D~vi~a~G~~Pn~~~l--~~~~~~~~~g~I~V 265 (443)
T PRK09564 193 ITDVMEEELREKGVELHTSEFVKSLIGEDKVEGVVT--NK---GEYEADVVILSTGIKPNTEFL--EDQLKTLKNGAIIV 265 (443)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEE--CC---CEEEEEEEEECCCCCCCHHHH--HCCCEECCCCEEEE
T ss_conf 999999999977979998998999992698999997--79---889723899955885350787--62842034997986
Q ss_pred CCCCEEECCCCEEECCCCC-------C---CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHH
Q ss_conf 4874230258588304445-------5---32444123202555543024664432122320024543033400014968
Q gi|254780675|r 311 DGYGRTNVPGIYAIGDVAG-------A---PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEE 380 (481)
Q Consensus 311 d~~~qTs~p~IyA~GDv~g-------~---~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ 380 (481)
|++||||+|+|||+|||+. . .+|+|.|.+||++|++|++++...++ .+...|.+.|++||+|+||+||+
T Consensus 266 de~~~Ts~~~IyA~GD~~~~~~~~~~~~~~~~l~~~A~~~g~iaa~n~~g~~~~~~-~~~~~~~~~~~~~~iA~vGlte~ 344 (443)
T PRK09564 266 DEYGETSIENIYSAGDCATVYNIVSGKNVYVPLATTANKLGRIVGENLAGKDVYFK-GTLGSACIKVLSLEAARTGLTEE 344 (443)
T ss_pred CCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEECCCEECCCCCHH
T ss_conf 89802788999999657310355578856865478899998999986059974667-86666589994760242018899
Q ss_pred HHHCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 7610797279999964638233207898218999998899859999998299-889999999999877977899638854
Q gi|254780675|r 381 KARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPE-VTELIQGFSIAMSLETTEEELMHTVFP 459 (481)
Q Consensus 381 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~-A~eli~~~~~ai~~~~t~~~l~~~~~~ 459 (481)
||++.|+++++..... .+.++...+..+||+||++|+++++|||+|++|++ |+|+||.+++||++++|++||+.+.|+
T Consensus 345 eA~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~Kli~d~~t~~IlGa~ivg~~~a~e~I~~~a~AI~~~~tv~dL~~~~~a 423 (443)
T PRK09564 345 EAKKLGIDYKTVFIKD-KNHTNYYPGQEDIYVKLIYEAETKVLLGGQIIGKKGAVLRINALAVAITSKMTTQELGMMDFC 423 (443)
T ss_pred HHHHCCCCEEEEEECC-CCHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 9997799769999667-875652789973999999999989899999999734999999999999879979999558655
Q ss_pred C-CCHHHHHHH
Q ss_conf 8-778999999
Q gi|254780675|r 460 H-PTISETMKE 469 (481)
Q Consensus 460 h-Pt~~E~l~~ 469 (481)
| |++|+.+.-
T Consensus 424 y~P~~s~~~d~ 434 (443)
T PRK09564 424 YAPPFSRTWDA 434 (443)
T ss_pred CCCCCCCCHHH
T ss_conf 79998853429
No 30
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=0 Score=488.85 Aligned_cols=400 Identities=21% Similarity=0.277 Sum_probs=293.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC--CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 986434899989857999999999879--93999978888--62463256737088999999999998421178213487
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGL--GGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGK 76 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~--GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 76 (481)
|.+ +||||+|+||++||.++++.+ .+|+|||++.. -..| ++| ..+ .+.
T Consensus 1 M~k---iVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y~~~----~lp-----------~~~----------~~~ 52 (438)
T PRK13512 1 MPK---IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC----ALP-----------YVI----------GEV 52 (438)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----HHH-----------HHH----------CCC
T ss_conf 980---9998984999999999994391999999968998887623----667-----------987----------788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 544999999999999998534468763014142100000-1122--2210023687520013555543225863899724
Q gi|254780675|r 77 VEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKA-TLKN--PSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKH 153 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a-~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 153 (481)
.. +.+.++.+ .-+.+.++.+|++..++. .-+| .++|.+.+.. .....++++|+
T Consensus 53 ~~-~~~~~~~~----------~~~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~-------------~~~~~e~~YDk 108 (438)
T PRK13512 53 VE-DRKYALAY----------TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRK-------------TNEQFEESYDK 108 (438)
T ss_pred CC-CHHHHHCC----------CHHHHHHHCCCEEEECCEEEEECCCCCEEEEECCC-------------CCCEEECCCCE
T ss_conf 66-52432206----------98999987797999276899980666789995066-------------67423213458
Q ss_pred EEECCCCCCCCCCCCCCCCCCCC---CCCCCEECC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC
Q ss_conf 55257543111011134555422---124521113-----3344432156543321000232101333100000000122
Q gi|254780675|r 154 IIIATGARPRHIEGIEPDSHLIW---TYFDALKPS-----KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP 225 (481)
Q Consensus 154 ivIATGs~p~~~~g~~~~~~~~~---t~~~~l~l~-----~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~ 225 (481)
+||||||+|+.+ +++ .+.++ +.+|+..+. .-+++++|||||+||+|+|..|+++|++||++++.+++++
T Consensus 109 LviATGs~p~~~-g~~--~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~ 185 (438)
T PRK13512 109 LILSPGASANSL-GFE--SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred EEEECCCCCCCC-CCC--CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 999679888766-878--99879979999999999988617997799989558999999999972990899993573120
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-
Q ss_conf 2222212221001220123322100134420223431012440367402110232243057422000023222112357-
Q gi|254780675|r 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS- 304 (481)
Q Consensus 226 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~- 304 (481)
.+|+++++.+++.|++.||++++++.+++++++. +++ .+|+ .+++|.|++|+|++||++. |+++|++++
T Consensus 186 ~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~----v~~--~~g~--~~~~D~vi~a~G~~Pn~~~--~~~~gi~~~~ 255 (438)
T PRK13512 186 LMDADMNQPILDELDKREIPYRLNEEIDAINGNE----ITF--KSGK--VEHYDMIIEGVGTHPNSKF--IESSNIKLDR 255 (438)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCE----EEE--EECC--EEEECEEEEEEECCCCHHH--HHHCCCCCCC
T ss_conf 0499999999999986899999587799997979----999--3288--9740789996710027367--8853876578
Q ss_pred CEEEEECCCCEEECCCCEEECCCCCC----------CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEE
Q ss_conf 32664248742302585883044455----------32444123202555543024664432122320024543033400
Q gi|254780675|r 305 NGCIIVDGYGRTNVPGIYAIGDVAGA----------PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVAS 374 (481)
Q Consensus 305 ~g~i~vd~~~qTs~p~IyA~GDv~g~----------~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~ 374 (481)
+|+|.||++||||+|+|||+|||+.. .||++.|.+||+++|.||.|........+...+.+.|++|++|+
T Consensus 256 ~G~I~Vd~~~~Ts~~~IyA~GD~a~~~~~~t~~~~~~pla~~A~~~g~iaa~nl~g~~~~~~~~~~~~~~~~~~~~~iA~ 335 (438)
T PRK13512 256 KGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFAS 335 (438)
T ss_pred CCCEEECCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEE
T ss_conf 87298788221489999999425673013478753123517889999999998549986666882677789988862699
Q ss_pred ECCCHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHH
Q ss_conf 0149687610797279999964638233207898218999998899859999998299-889999999999877977899
Q gi|254780675|r 375 IGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPE-VTELIQGFSIAMSLETTEEEL 453 (481)
Q Consensus 375 vG~te~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~-A~eli~~~~~ai~~~~t~~~l 453 (481)
||+||+||++.++++ .+......+.+ ..+.+..++|+++|++|++|||+|++|++ +.++||.+++||++++|++||
T Consensus 336 vGlte~eA~~~~~~~--v~~~~~~~~~~-~~~~~~~~~Kli~d~~t~~ILGaqiig~~~~~~~In~la~AI~~~~Tv~dL 412 (438)
T PRK13512 336 VGVKPNELKQFDYKM--VEVTQGAHANY-YPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDEL 412 (438)
T ss_pred EECCHHHHHHCCCEE--EEEECCCCCCC-CCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 444598871089619--99805876130-799975999999999989899999999756999999999999879979998
Q ss_pred HCCCCC-CCCHHHHHH
Q ss_conf 638854-877899999
Q gi|254780675|r 454 MHTVFP-HPTISETMK 468 (481)
Q Consensus 454 ~~~~~~-hPt~~E~l~ 468 (481)
+.+-|. +|.+|..+.
T Consensus 413 ~~~d~~y~Ppfs~~~d 428 (438)
T PRK13512 413 TEFEVAYAPPYSHPKD 428 (438)
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 5072737999898507
No 31
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=0 Score=489.22 Aligned_cols=393 Identities=23% Similarity=0.296 Sum_probs=298.3
Q ss_pred HHHHHHHHC--CCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999987--993999978888624632567370889999999999984211782134875449999999999999985
Q gi|254780675|r 18 VAAIRAAQL--GFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRL 95 (481)
Q Consensus 18 ~aA~~~a~~--G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (481)
+||.+++++ ..+|++|||+..= .+..| .+... +.+.+. +.+.++.
T Consensus 1 saA~~~rrl~p~~eI~vi~~~~~~---~y~~c----------~lp~~----------l~g~i~-~~~~l~~--------- 47 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDV---SFANC----------GLPYV----------IGGVID-DRNKLLA--------- 47 (427)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCC---CCHHH----------HHHHH----------HCCCCC-CHHHCCC---------
T ss_conf 977988843989978999679986---43564----------55697----------777227-8787216---------
Q ss_pred HHHHHHHHHCCCEEEECCC-CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 3446876301414210000-01122221--002368752001355554322586-3899724552575431110111345
Q gi|254780675|r 96 NRGVEFLMHKNKVDIIWGK-ATLKNPSE--ITVSKPSQPAVQPQHPIPKKVLGE-GTYKAKHIIIATGARPRHIEGIEPD 171 (481)
Q Consensus 96 ~~~~~~~~~~~~v~~~~G~-a~f~~~~~--v~v~~~~~~~~~~~~~~~~~~~~~-~~~~a~~ivIATGs~p~~~~g~~~~ 171 (481)
..-+.+.++.+|++..++ ..-+|+.. |.+.+.. .++ ..+.||++||||||+|+.||....+
T Consensus 48 -~~~e~~~~~~~I~v~~~~~V~~ID~~~k~V~~~~~~--------------~~~~~~~~YDkLiiATGs~p~~p~i~g~~ 112 (427)
T TIGR03385 48 -YTPEKFIEKRGIDVKTNHEVIKVNDERQTVVVKNNK--------------TNETYEESYDYLILSPGASPIIPNIEGIN 112 (427)
T ss_pred -CCHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECC--------------CCCEEECCCCEEEECCCCCCCCCCCCCCC
T ss_conf -798999987894999189799998999999996679--------------89664457899999769985679999867
Q ss_pred CCCCCCCC---CCEECC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-CCCCCCCCCCCCHHHHHC
Q ss_conf 55422124---521113-----334443215654332100023210133310000000012-222222122210012201
Q gi|254780675|r 172 SHLIWTYF---DALKPS-----KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-PVEDSEISQFVQRSLQKR 242 (481)
Q Consensus 172 ~~~~~t~~---~~l~l~-----~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-~~~d~~~~~~~~~~l~~~ 242 (481)
.+.+++.+ |+..+. +-|++++|||||+||+|+|++|+++|++||++++.+++| +.+|+++++.+++.|+++
T Consensus 113 ~~~V~~lr~~~Da~~i~~~l~~~~~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~ 192 (427)
T TIGR03385 113 LDITFTLRNLEDTDAIKQYIDANKVDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKH 192 (427)
T ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 89889979999999999987507998899999639999999999976998999984683365548999999999999975
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECCCC
Q ss_conf 23322100134420223431012440367402110232243057422000023222112357-32664248742302585
Q gi|254780675|r 243 GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVPGI 321 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p~I 321 (481)
||++++++.++++++++. .+.+ .+| +++++|.|++|+|++||++. |+++||+++ +|+|.||++||||+|+|
T Consensus 193 Gv~i~~~~~v~~i~~~~~--~~~l--~~g--~~i~~D~vi~a~G~~Pn~~~--~~~~gl~~~~~G~I~Vd~~~~Ts~p~I 264 (427)
T TIGR03385 193 EIELRLNEEVDSIIGEER--VGVI--TSG--GVYQADMVILAIGVKPNSEL--AKDSQLKLGRTGAIWVNEKFQTSVPNI 264 (427)
T ss_pred CCEEEECCEEEEEECCCC--EEEE--ECC--CEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEECCCCCCCCCCCE
T ss_conf 979997988999987887--8999--469--99972899988774676424--325561665888685276554368999
Q ss_pred EEECCCCCC----------CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEE
Q ss_conf 883044455----------3244412320255554302466443212232002454303340001496876107972799
Q gi|254780675|r 322 YAIGDVAGA----------PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRV 391 (481)
Q Consensus 322 yA~GDv~g~----------~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~ 391 (481)
||+|||+.. .+|+|.|.+||++|++||+|....++ .+...|.+.|++|++|+||+||+||++.|+++++
T Consensus 265 yA~GD~a~~~~~~t~~~~~~~l~~~A~~qgriaa~ni~g~~~~~~-~~~~~~~~~~~~~~iA~vGlTE~eA~~~g~~~~~ 343 (427)
T TIGR03385 265 YAAGDVAESKNIVTKKPAWIPLAWGANKMGRIVGENIAGNDIEFK-GTLGTSITKFFDLTIASTGVTENEAKRLNIDYKT 343 (427)
T ss_pred EEEECEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEE
T ss_conf 998210411455568842341568999999999997459986778-8667668998892559973849999877998799
Q ss_pred EEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHH
Q ss_conf 99964638233207898218999998899859999998299-88999999999987797789963885-4877899999
Q gi|254780675|r 392 GKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPE-VTELIQGFSIAMSLETTEEELMHTVF-PHPTISETMK 468 (481)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~-A~eli~~~~~ai~~~~t~~~l~~~~~-~hPt~~E~l~ 468 (481)
++..+...+++. .+...+++||++|++|++|||+|++|++ |+++||.+++||++++|++||+++-| +||.+|..|.
T Consensus 344 ~~~~~~~~~~~~-~~~~~~~vKli~d~~t~rILGaqiiG~~~a~~~I~~la~AI~~g~Tv~dL~~~d~~y~P~f~~~~d 421 (427)
T TIGR03385 344 VFVKAKTHANYY-PGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWD 421 (427)
T ss_pred EEECCCCHHHHC-CCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 998668727654-799868999999999898998999987219999999999998799799984684657999998616
No 32
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=100.00 E-value=0 Score=485.34 Aligned_cols=450 Identities=28% Similarity=0.476 Sum_probs=398.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEC----C-----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8643489998985799999999987-993999978----8-----88624632567370889999999999984211782
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQL-GFKVAIVEY----A-----GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGL 71 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~-G~~V~liEk----~-----~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~ 71 (481)
|+-||++|||+|.+|+.|.-.++.+ .++|++||- + .+||||+|+||+|+|.|+.-+..++.+|....|||
T Consensus 1 s~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~resaGfGW 80 (486)
T TIGR01423 1 SKAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCE
T ss_conf 94057899824777410010123321031689984224799300010872687234363001100578888876237640
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 1348-754499999999999999853446876301-41421000001122221002368752001355554322586389
Q gi|254780675|r 72 NVAG-KVEFNIEDIVKRSRDISHRLNRGVEFLMHK-NKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTY 149 (481)
Q Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 149 (481)
..+. .+..+|..++..++..+..+++.++.+++. .|.+++.|++.+.+.+.|.|........ .-.+++
T Consensus 81 e~d~~~~~~nWk~liaakn~av~~in~sye~mf~dteGl~f~~G~Gal~~~~~v~vre~adP~s----------~v~e~l 150 (486)
T TIGR01423 81 ELDAESVKANWKALIAAKNKAVLDINDSYEDMFKDTEGLEFFLGFGALEDKNVVLVRESADPKS----------KVKERL 150 (486)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCEEEEECCCCCHH----------HHHHHH
T ss_conf 0032454466789998766777767655777741024402220112001475799962788525----------786510
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCC---CCCCCCEECCCCCCCC
Q ss_conf 9724552575431110111345554221245211133344432156543321000232101---3331000000001222
Q gi|254780675|r 150 KAKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSL---DVDVSLIEVKDRILPV 226 (481)
Q Consensus 150 ~a~~ivIATGs~p~~~~g~~~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~l---G~~Vtli~~~~~ll~~ 226 (481)
.+++++|||||+|..+. ++ ..+.+++|.++|.|++.|+|++.+|||+|.+|||.+|+.. |-+|+|.+|.+.+|+.
T Consensus 151 ~~e~i~~atGsWPq~l~-i~-G~~~Ci~sneafyl~e~P~r~l~vGGG~is~efaGifnayk~~GG~v~l~yr~~~ilrG 228 (486)
T TIGR01423 151 DAEYILLATGSWPQMLK-IE-GIELCISSNEAFYLEEAPKRVLTVGGGYISVEFAGIFNAYKAVGGKVDLAYRNDMILRG 228 (486)
T ss_pred CCCEEEEEECCCCCCCC-CC-CCCEEEECCCCEECCCCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCEEEEC
T ss_conf 43359997167732003-56-64203302320100478854898647479986200123231579758998738703303
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCC-C
Q ss_conf 22221222100122012332210013442022343-101244036740211023224305742200002322211235-7
Q gi|254780675|r 227 EDSEISQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKT-S 304 (481)
Q Consensus 227 ~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~-~ 304 (481)
||.++++.+.++|..+||++.++..+..++.+.|+ ..|.++ .| .++..|.|++|+||.|.+..|.|+++|+++ +
T Consensus 229 fd~~lr~~lt~ql~anGi~~~t~enP~k~~~n~dG~~hv~fe--sG--~~~d~dvvm~aiGr~Pr~~~lql~~~Gv~~~~ 304 (486)
T TIGR01423 229 FDSELRKELTKQLVANGIDVRTNENPAKVEKNADGSKHVVFE--SG--KELDVDVVMLAIGRLPRSQTLQLDKVGVELAD 304 (486)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCHHEEECCCCCEEEEEC--CC--CCCCEEEEEEEECCCCCCCEEEEECCCEEEEC
T ss_conf 227899999988762661366447700110078984468862--67--73340178876236776431340000301113
Q ss_pred CEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHC
Q ss_conf 32664248742302585883044455324441232025555430246644321223200245430334000149687610
Q gi|254780675|r 305 NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARS 384 (481)
Q Consensus 305 ~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~ 384 (481)
+|.|.||+|-+|++|||||+||++++.+|+++|..+|....+.+++..++ ..|+..+...||+.|+++..|++|++|.+
T Consensus 305 ~Gai~vd~~s~tnv~niyaiGdvt~r~mltPvaineGa~~vdt~f~~kPr-~tdht~va~avfsiPP~G~CG~~ee~aak 383 (486)
T TIGR01423 305 KGAIKVDEYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAVVDTVFASKPR-KTDHTKVASAVFSIPPIGVCGLVEEEAAK 383 (486)
T ss_pred CCCEEECCHHCCCCCCEEEECCCCCCEEEEEEEECCCCHHHHHHHCCCCC-CCCCCEEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 76444300000463313552021360576223201564010132237887-54331224455505876403542015532
Q ss_pred CCCCEEEEEEECCCCHHHHCCCCCCE-EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCH
Q ss_conf 79727999996463823320789821-89999988998599999982998899999999998779778996388548778
Q gi|254780675|r 385 QGLDIRVGKHSFSANGKAITLGEDSG-MIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTI 463 (481)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~~~~~~G-~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~ 463 (481)
....+.++...|.+....+.-....- .+|++.+..+|.++|+|++|..+-|+|+..+..|+.+..++|+-.++-.|||-
T Consensus 384 ~~~~vavy~s~ftPlmhnisGs~ykkf~~~i~t~h~dG~v~Gvh~lGdssPeiiq~v~iC~k~~akisdfyntiGvhPts 463 (486)
T TIGR01423 384 KYEKVAVYLSSFTPLMHNISGSKYKKFVVKIVTDHADGEVLGVHLLGDSSPEIIQAVAICLKLNAKISDFYNTIGVHPTS 463 (486)
T ss_pred HHHHEEEEEHHCCHHHHHCCCCHHHEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
T ss_conf 02002222011000232124201421323334305886089999744887668876443221045010232103556566
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780675|r 464 SETMK 468 (481)
Q Consensus 464 ~E~l~ 468 (481)
+|.|-
T Consensus 464 aeelC 468 (486)
T TIGR01423 464 AEELC 468 (486)
T ss_pred HHHHH
T ss_conf 45544
No 33
>PRK04965 nitric oxide reductase; Provisional
Probab=100.00 E-value=0 Score=358.20 Aligned_cols=355 Identities=18% Similarity=0.259 Sum_probs=251.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9864348999898579999999998799--39999788886246325673708899999999999842117821348754
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGF--KVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~--~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (481)
|+++ |||||+|+||+++|..+++.+. +++||+++..- .+.-|.-|+.+.. .
T Consensus 1 M~~~--IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~---~Y~rp~Ls~~~~~----------------------~ 53 (378)
T PRK04965 1 MSNG--IVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD---EYNKPDLSHVFSQ----------------------G 53 (378)
T ss_pred CCCC--EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC---CCCCCCCHHHHCC----------------------C
T ss_conf 9899--99998829999999999711949869999899998---8767816698828----------------------9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 499999999999999853446876301414210000-0112222100236875200135555432258638997245525
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGK-ATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIA 157 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIA 157 (481)
.+.+++. ...-+.+.++.+|++..++ ..-+|+..-.|. ....++.||++|||
T Consensus 54 ~~~~~l~----------~~~~~~~~~~~~I~l~~~~~V~~ID~~~k~V~-----------------~~g~~~~YDkLVLA 106 (378)
T PRK04965 54 QRADDLT----------RQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK-----------------SQGNQWQYDKLVLA 106 (378)
T ss_pred CCHHHHH----------CCCHHHHHHHCCEEEECCCEEEEECCCCCEEE-----------------ECCCEEECCEEEEE
T ss_conf 9968953----------17989998748979986989999846463799-----------------58919846879993
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEE---CC---CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCC-CCCC
Q ss_conf 75431110111345554221245211---13---33444321565433210002321013331000000001222-2222
Q gi|254780675|r 158 TGARPRHIEGIEPDSHLIWTYFDALK---PS---KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPV-EDSE 230 (481)
Q Consensus 158 TGs~p~~~~g~~~~~~~~~t~~~~l~---l~---~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~-~d~~ 230 (481)
|||+|+.||. +. ...+++.+++-+ +. .-.++++|||||+||+|+|..|+..|.+||++++.+++|+. +|++
T Consensus 107 TGa~p~~ppi-~G-~~~v~tlr~l~d~~~~~~~l~~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~ 184 (378)
T PRK04965 107 TGASAFVPPV-PG-RELMLTLNSQQEYRACETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPE 184 (378)
T ss_pred CCCCCCCCCC-CC-CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHH
T ss_conf 5887557899-99-647998199999999997751497899989838899999999967988999766674422117899
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 12221001220123322100134420223431012440367402110232243057422000023222112357326642
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIV 310 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~v 310 (481)
+++.+++.|++.||++++++.++++++++++..+++ .|| +++++|.|++|+|.+||++. ++++||++++| |.|
T Consensus 185 ~~~~l~~~l~~~GV~~~~~~~v~~i~~~~~~~~v~l--~dG--~~i~aD~Vv~a~Gv~Pnt~l--a~~aGl~~~~G-I~V 257 (378)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTESGIRATL--DDG--RSIEVDAVIAAAGLRPNTAL--ARRAGLAVNRG-ICV 257 (378)
T ss_pred HHHHHHHHHHHCCEEEEECCEEEEEEECCCEEEEEE--CCC--CEEECCEEEECCCCCCCHHH--HHHCCCCCCCC-EEE
T ss_conf 999999999978909996988999996599899998--599--79984999989477548278--98669866998-899
Q ss_pred CCCCEEECCCCEEECCCCC---C-CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEE-EHHHEEECCCHHHHHCC
Q ss_conf 4874230258588304445---5-32444123202555543024664432122320024543-03340001496876107
Q gi|254780675|r 311 DGYGRTNVPGIYAIGDVAG---A-PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYC-NPQVASIGLTEEKARSQ 385 (481)
Q Consensus 311 d~~~qTs~p~IyA~GDv~g---~-~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft-~P~ia~vG~te~ea~~~ 385 (481)
|++||||+|+|||+|||+. . .++..-++.||+.+|++++|.+. ++.+..+|..+-| .-++.+.|-+..+
T Consensus 258 d~~l~TS~p~IyA~GDcAe~~g~~~~~v~p~~~~a~~lA~~l~G~~~--~~~~~~~~~~~K~~~~~i~~~g~~~~~---- 331 (378)
T PRK04965 258 DSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSANALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQ---- 331 (378)
T ss_pred CCCCCCCCCCEEEEEEEEEECCEEEEHHHHHHHHHHHHHHHHCCCCC--CCCCCCCEEEEEECCCCEEECCCCCCC----
T ss_conf 99985499999998752898999750289999999999997079985--310487358985068512864788899----
Q ss_pred CCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHH
Q ss_conf 97279999964638233207898218999998899859999998299889999
Q gi|254780675|r 386 GLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQ 438 (481)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~ 438 (481)
.+......+.+|.++.++++ +++++|+-++|..+.+-..
T Consensus 332 -------------~~~~~~~~~~~g~~~~~~~~-~g~l~G~vl~Gd~~~~~~~ 370 (378)
T PRK04965 332 -------------DLRWQINAESQGMVAKAFDE-AGQLRGFVVSEDRMKEAFP 370 (378)
T ss_pred -------------CCEEEEEECCCCEEEEEECC-CCCEEEEEEECHHHHHHHH
T ss_conf -------------84399995599808999946-9969999997888887778
No 34
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=340.37 Aligned_cols=369 Identities=20% Similarity=0.271 Sum_probs=250.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9864348999898579999999998799--39999788886246325673708899999999999842117821348754
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGF--KVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~--~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (481)
|+ +++|||||+|+||++||..+++.|. +++||+++..- .+.-|.=||.++.. ..
T Consensus 1 M~-~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~---PY~Rp~Lsk~~l~~------------------~~-- 56 (400)
T PRK09754 1 MK-EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL---PYERPPLSKSMLLE------------------DS-- 56 (400)
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCCHHCCHHHHCC------------------CC--
T ss_conf 99-67299997759999999999806949979999899999---88651073998769------------------97--
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 4999999999999998534468763014142100000-112222100236875200135555432258638997245525
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKA-TLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIA 157 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIA 157 (481)
+.. ..+. -+..+++.+|++..|.. ..+|+..-+|. ..+..++.||++|||
T Consensus 57 ---~~~--------~~l~--~~~~y~~~~I~l~~g~~v~~id~~~~~V~----------------l~~g~~~~YD~LviA 107 (400)
T PRK09754 57 ---PQL--------QQVL--PANWWQENNVHLHSGVTIKTLGRDTRELV----------------LTNGESWHWDQLFIA 107 (400)
T ss_pred ---HHH--------HHCC--CHHHHHHCCCEEECCCEEEEECCCCCEEE----------------ECCCCEEECCEEEEC
T ss_conf ---244--------3248--98799878969988988999718898899----------------879988872605887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCEECCC---CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-CCCCC
Q ss_conf 7543111011134555422124---5211133---344432156543321000232101333100000000122-22222
Q gi|254780675|r 158 TGARPRHIEGIEPDSHLIWTYF---DALKPSK---TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDSE 230 (481)
Q Consensus 158 TGs~p~~~~g~~~~~~~~~t~~---~~l~l~~---~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-~~d~~ 230 (481)
||++|+.+|.....++.+++.+ |+..+.+ ..++++|||||+||||+|..++++|.+||+|++.+++|+ .++++
T Consensus 108 TGa~p~~lp~~~~~~~~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~ 187 (400)
T PRK09754 108 TGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPP 187 (400)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHH
T ss_conf 78887568998888899899779999999998761587399988558999999999975994899953463410026989
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 12221001220123322100134420223431012440367402110232243057422000023222112357326642
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIV 310 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~v 310 (481)
+++.+.+.++++||+|++++.++++. +++.+. +.+.+|+ ++++|.|++++|.+||++. ++.+|++.+ ++|.|
T Consensus 188 ~~~~l~~~~~~~GV~~~~~~~v~~~~-~g~~~~--v~l~~G~--~l~aD~VivaiGv~Pnt~l--a~~agL~~~-~GI~V 259 (400)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVV-DGEKVE--LTLQSGE--TLQADVVIYGIGISANDQL--AREANLDTA-NGIVI 259 (400)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEE-CCCEEE--EEECCCC--EEECCEEEECCCCCCCHHH--HHHCCCCCC-CEEEE
T ss_conf 99999999997898999587589997-897799--9986899--9985899989767537589--987799759-93999
Q ss_pred CCCCEEECCCCEEECCCCCCC-------CC--CCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEE---HHHEEECCC
Q ss_conf 487423025858830444553-------24--441232025555430246644321223200245430---334000149
Q gi|254780675|r 311 DGYGRTNVPGIYAIGDVAGAP-------ML--AHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCN---PQVASIGLT 378 (481)
Q Consensus 311 d~~~qTs~p~IyA~GDv~g~~-------~l--~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~---P~ia~vG~t 378 (481)
|++||||+|+|||+|||+-.+ .+ ...|..||++||.||+|.+.. |..+|+. ||+ -.+-++|..
T Consensus 260 D~~~~Ts~p~IyAaGDvA~~~~~~g~~~r~e~w~~A~~qg~~aa~nm~G~~~~----~~~~P~f-wsdq~~~~lq~~G~~ 334 (400)
T PRK09754 260 DEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLP----LLPPPWF-WSDQYSDNLQFIGDM 334 (400)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCE-EEHHCCCCEEEEECC
T ss_conf 97876489899999552035488888877236578889999999984299988----7899847-701159864998679
Q ss_pred HHHHHCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH--HHHCC
Q ss_conf 6876107972799999646382332078982189999988998599999982998899999999998779778--99638
Q gi|254780675|r 379 EEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEE--ELMHT 456 (481)
Q Consensus 379 e~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~--~l~~~ 456 (481)
. +.++.+ +-+ .+...|+..+++ +++++|+-.++.. .-+..+.-+|..+.+++ +|.|.
T Consensus 335 ~------~d~~~~-~gd----------~~~~~~~~~~~~--~~~lv~~~~~n~~--~~~~~~r~li~~~~~~~~~~l~d~ 393 (400)
T PRK09754 335 R------GDDWLC-RGN----------PETQKAIWFNLQ--NGVLIGAVTLNQG--REIRPIRKWIQSGKTFDAKLLIDE 393 (400)
T ss_pred C------CCEEEE-EEC----------CCCCEEEEEEEE--CCEEEEEEEECCH--HHHHHHHHHHHCCCCCCHHHCCCC
T ss_conf 9------975999-822----------799759999981--9989999986883--899999999978878898991697
No 35
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00 E-value=4.9e-44 Score=338.68 Aligned_cols=290 Identities=27% Similarity=0.437 Sum_probs=218.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC
Q ss_conf 34899989857999999999879939999788886---246325673708899999999999842117821348754-49
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG---GICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE-FN 80 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~-~~ 80 (481)
|||+||||||||++||+|++|.+++++|||+...| |. |. ....+.|.+.| ++ +.
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGq-----------l~----~T~~vENYPGf-------~e~i~ 58 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQ-----------LT----TTTEVENYPGF-------PEGIS 58 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC-----------CC----CCCEEECCCCC-------CCCCC
T ss_conf 9289984786788899998874672789835777745553-----------33----22065136868-------88766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
.++|++..++++.++ +.+++.|.. --+|...+.. .. .. ....... .+|+||.||||||+
T Consensus 59 G~~L~~~M~~Qa~~f-----------G~~~~~G~~------v~~v~~~~~~-yE-~~-~F~~~~~-~~y~a~avIiAtGa 117 (321)
T TIGR01292 59 GPELMEKMKEQAKKF-----------GAEIIYGEE------VIRVDKSDRA-YE-SD-PFKVKTG-KEYTAKAVIIATGA 117 (321)
T ss_pred HHHHHHHHHHHHHHC-----------CCCEEECCE------EEEEECCCCC-CC-CC-EEEEEEC-CEEEEEEEEEECCC
T ss_conf 288999999999870-----------673662670------5686337884-36-61-0389717-56886589991387
Q ss_pred CCCCCCCCC-CC----CCCC---CCCCC--CEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 311101113-45----5542---21245--21113334443215654332100023210133310000000012222222
Q gi|254780675|r 161 RPRHIEGIE-PD----SHLI---WTYFD--ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSE 230 (481)
Q Consensus 161 ~p~~~~g~~-~~----~~~~---~t~~~--~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~ 230 (481)
+|+.+. ++ .. ++.+ =++|. .|..+ |+|+|||||..|+|=|.+|++++++||||+|+|.|-
T Consensus 118 ~~r~lg-~~kGE~ef~GrGVSyCA~CDGA~~ffk~---K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~fR------ 187 (321)
T TIGR01292 118 EARKLG-IPKGEDEFLGRGVSYCATCDGASPFFKN---KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKFR------ 187 (321)
T ss_pred HHHHCC-CCCCHHHHCCCCEEEEEHHCCCCHHHCC---CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC------
T ss_conf 154237-8866455326866672231054012059---889998798248888899985387679997798636------
Q ss_pred CCCCCCHHHHHC---CCCCCCCHHHHHHCCCC--CCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCC-CCC
Q ss_conf 122210012201---23322100134420223--431012440-36740211023224305742200002322211-235
Q gi|254780675|r 231 ISQFVQRSLQKR---GIKILTESKISSVKQKG--DMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG-VKT 303 (481)
Q Consensus 231 ~~~~~~~~l~~~---Gv~i~~~~~v~~v~~~~--~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g-i~~ 303 (481)
..+.+.+++++. +|+|++|+.|++|.+++ ..-.|.+.+ .+++++++++|-||+++|..|||+. |+..| +++
T Consensus 188 A~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~ 265 (321)
T TIGR01292 188 AEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLEL 265 (321)
T ss_pred CCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEE
T ss_conf 328999899837898789964868999961783155335899623884889984447898412032057--650783467
Q ss_pred CC-EEEEECCC----CEEECCCCEEECCCCC--CCCCCCCCCCCHHHHHHHHC
Q ss_conf 73-26642487----4230258588304445--53244412320255554302
Q gi|254780675|r 304 SN-GCIIVDGY----GRTNVPGIYAIGDVAG--APMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 304 ~~-g~i~vd~~----~qTs~p~IyA~GDv~g--~~~l~~~A~~qg~~aa~~i~ 349 (481)
|+ |+|+||+. ||||+|+|||||||.+ .+..+-+|..+|.+||..+.
T Consensus 266 D~~GyI~t~~~~Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a~ 318 (321)
T TIGR01292 266 DEGGYIVTDEGLGNTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSAE 318 (321)
T ss_pred CCCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHH
T ss_conf 69986886175486123066868973044068861376787000689999998
No 36
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=4.6e-43 Score=331.58 Aligned_cols=288 Identities=23% Similarity=0.313 Sum_probs=204.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978888624632567370889999999999984211782134875449
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
|++.||++||||||||++||+++++.|++++|||++.+||.|.+..- +.+ +++.+.+.
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~---------------VeN-------YPG~~~is 58 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSE---------------VVN-------YPGILNTT 58 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCC---------------EEE-------CCCCCCCC
T ss_conf 98447299999568899999999978996799966886865563685---------------687-------88877986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
..+++++.+..+. +.++++..++..- +.... . .......+.+|+++.+|||||+
T Consensus 59 G~eL~~~m~~qA~-----------~~Gve~~~~~V~~-------i~~~g-~-------~k~V~t~~g~~~ak~VIIATGa 112 (555)
T TIGR03143 59 GPELMQEMRQQAQ-----------DFGVKFLQAEVLD-------VDFDG-D-------IKTIKTARGDYKTLAVLIATGA 112 (555)
T ss_pred HHHHHHHHHHHHH-----------HCCCEEEEEEEEE-------EECCC-C-------CEEEEECCCEEEECEEEECCCC
T ss_conf 8999999999999-----------7796999656999-------97379-9-------5899988978996979999999
Q ss_pred CCCCCC--CCCC-CCCC---CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 311101--1134-5554---221245211133344432156543321000232101333100000000122222221222
Q gi|254780675|r 161 RPRHIE--GIEP-DSHL---IWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQF 234 (481)
Q Consensus 161 ~p~~~~--g~~~-~~~~---~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~ 234 (481)
+|+.+. |-.. .++. +-++|..|. ..++++|||||.+|+|.|.+|++++++||||+|++.+. ..+.
T Consensus 113 ~pr~LgipGE~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~------a~~~ 183 (555)
T TIGR03143 113 SPRKLGFPGEEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT------CAKL 183 (555)
T ss_pred CCCCCCCCCHHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC------CCHH
T ss_conf 71438999732216871377403763241---79869998388899999999997489089999787568------5899
Q ss_pred CCHH-HHHCCCCCCCCHHHHHHCCCCCCCCEEEE-ECCCCEEEEECC------CEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf 1001-22012332210013442022343101244-036740211023------2243057422000023222112357-3
Q gi|254780675|r 235 VQRS-LQKRGIKILTESKISSVKQKGDMVSVQVE-RKDGSVSSMQAE------KLLLSAGVQGNIENIGLEKIGVKTS-N 305 (481)
Q Consensus 235 ~~~~-l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~-~~dG~~~~i~~D------~vl~a~Gr~Pn~~~L~Le~~gi~~~-~ 305 (481)
+.+. +++.+|++++++.++++.+++..-.+.+. ..+|+..+++++ .||+++|+.|||+ |.+.++++| +
T Consensus 184 ~~e~~~~~~kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~ 260 (555)
T TIGR03143 184 IAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKR 260 (555)
T ss_pred HHHHHHHCCCEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCC
T ss_conf 999998579859997888999986785489999998889789960465667628999979965415---66073258889
Q ss_pred EEEEECCCCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHH
Q ss_conf 26642487423025858830444553-24441232025555430
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKI 348 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i 348 (481)
|+|+||++||||+|||||+|||...+ ..+-+|..+|-+||-++
T Consensus 261 GyI~tDe~m~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~a 304 (555)
T TIGR03143 261 GYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 71973999705999889883452898773547087579999999
No 37
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.5e-42 Score=325.22 Aligned_cols=294 Identities=20% Similarity=0.268 Sum_probs=188.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 34899989857999999999879939999788886246325673708899999999999842117821348754499999
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDI 84 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 84 (481)
.+|+||||||||++||++|+++|++|+|||+...+|.|+++|| |++.+-.. .+.+.++.....+.....
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gi-p~~~~p~~-~~~~~~~~l~~~g~~~~~--------- 86 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGI-PEFRIPIE-RVREGVRELEELGVVFHT--------- 86 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE-CCCCCCHH-HHHHHHHHHHHHCCEEEC---------
T ss_conf 9899999558899999999978998599953696982899834-79766688-999999999970976973---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCC
Q ss_conf 9999999998534468763014142100000112222100236875200135555432258638997245525754-311
Q gi|254780675|r 85 VKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-RPR 163 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~p~ 163 (481)
+..+...... .... ...... ......+...++|.+|||||+ +|+
T Consensus 87 ----------------------~~~v~~~~~~------~~~~---~~~~~~----~~~~~~~~~~~~daviiAtG~~~~r 131 (350)
T PRK12770 87 ----------------------RTKVYCDEPP------HEEE---GDEFVE----DFVSLEELVEEYDAVLIATGTWKSR 131 (350)
T ss_pred ----------------------CEEEEEECCE------EEEE---CCEEEE----EEEEHHHHHHHCCEEEEECCCCCCC
T ss_conf ----------------------2099850201------1330---320357----7601898774189999965899773
Q ss_pred CCCCCCCCCCCCCCCCCC-----------EECCCC----CCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCCCCCCC
Q ss_conf 101113455542212452-----------111333----44432156543321000232101333-10000000012222
Q gi|254780675|r 164 HIEGIEPDSHLIWTYFDA-----------LKPSKT----PKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDRILPVE 227 (481)
Q Consensus 164 ~~~g~~~~~~~~~t~~~~-----------l~l~~~----p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~ll~~~ 227 (481)
.++....+...+++..+. +..... +++++|||||++|+|+|..|+++|++ |++++|++..
T Consensus 132 ~l~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~---- 207 (350)
T PRK12770 132 KLGIPGENLPGVYSALEYLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTIN---- 207 (350)
T ss_pred CCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHH----
T ss_conf 5898874567808647878776534353355344665589889998986456799999997599689999666500----
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEE----------------ECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 2221222100122012332210013442022343101244----------------036740211023224305742200
Q gi|254780675|r 228 DSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVE----------------RKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 228 d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~----------------~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
+........+.+.+.|++++++..+.++..++....+++. ..+|+..++++|.||+|+|++||+
T Consensus 208 ~~~~~~~~~~~l~~~gv~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~ 287 (350)
T PRK12770 208 EAPAGKYEIERLIERGVEFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTP 287 (350)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCC
T ss_conf 28618999999997698899745229998279678999999886056667745531213741031057899997777884
Q ss_pred ECCCCCCCCCCCC-CEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 0023222112357-3266424874230258588304445532444123202555543024
Q gi|254780675|r 292 ENIGLEKIGVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 292 ~~L~Le~~gi~~~-~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
+. ++++|++++ +|+|.||++||||+|||||+|||+++|+++|.|..||+.||.+|..
T Consensus 288 ~~--~~~~gv~ld~~G~I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~~ 345 (350)
T PRK12770 288 PF--KKELGIELNRDGEIKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIHE 345 (350)
T ss_pred CH--HHHCCEEECCCCEEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 13--54159128899819869897448999998016878888999999999999999999
No 38
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=5.5e-39 Score=301.99 Aligned_cols=290 Identities=25% Similarity=0.358 Sum_probs=205.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 64348999898579999999998799399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
..|||+||||||||++||+++++.|++++||++ .+||.+.... .+.|. .+.+.+..+
T Consensus 211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~---------------~IeNy-------pG~~~i~G~ 267 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTV---------------GIENL-------ISVPYTTGS 267 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECC---------------CEEEC-------CCCCCCCHH
T ss_conf 888889989678999999999977997699924-8775313034---------------60044-------898777579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
+++++.++++ ++.+++++.+... ..+...+ ............++++.+|||||++|
T Consensus 268 eL~~~~~~qa-----------~~~gv~~~~~~~v------~~i~~~~-------~~~~v~~~~g~~~~aktVIiATGa~~ 323 (515)
T TIGR03140 268 QLAANLEEHI-----------KQYPIDLMENQRA------KKIETED-------GLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHH-----------HHCCCEEEECCEE------EEEECCC-------CCEEEEECCCCEEEECEEEECCCCCC
T ss_conf 9999999999-----------9749689913369------9997279-------81899987998999397999569873
Q ss_pred CCC--CCCC-CCCCCC---CCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 110--1113-455542---2124521113334443215654332100023210133310000000012222222122210
Q gi|254780675|r 163 RHI--EGIE-PDSHLI---WTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQ 236 (481)
Q Consensus 163 ~~~--~g~~-~~~~~~---~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~ 236 (481)
+.+ ||-. ..++.+ -++|..|. ..|+++|||||..|+|.|..|+++.++||+++|++.+-. .+.+.
T Consensus 324 r~l~vpGE~e~~GkGVsYCa~CDG~~f---kgK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra------~~~l~ 394 (515)
T TIGR03140 324 RKLGVPGEKEYIGKGVAYCPHCDGPFF---KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQ 394 (515)
T ss_pred CCCCCCCHHHCCCCCCCEECCCCCHHC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC------CHHHH
T ss_conf 558999678703874010010781011---897699989977999999999841771699736523343------38899
Q ss_pred HHHHH-CCCCCCCCHHHHHHCCCCCCCC-EEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECC
Q ss_conf 01220-1233221001344202234310-12440-367402110232243057422000023222112357-32664248
Q gi|254780675|r 237 RSLQK-RGIKILTESKISSVKQKGDMVS-VQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDG 312 (481)
Q Consensus 237 ~~l~~-~Gv~i~~~~~v~~v~~~~~~~~-v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~ 312 (481)
+.+++ .+|++++++.++++.++++.+. +.+.+ .+|+.+++++|.||+++|..||++.+ ... ++++ +|+|.||+
T Consensus 395 ~kl~~~~nI~i~~~~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~~-v~l~~~G~I~vD~ 471 (515)
T TIGR03140 395 DKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDE 471 (515)
T ss_pred HHHHHCCCEEEEECCEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HCH-HCCCCCCEEECCC
T ss_conf 9998389868997988899987898589999998899977999868999984997662565--151-1107997398299
Q ss_pred CCEEECCCCEEECCCCCCCC-CCCCCCCCHHHHHHHHCCC
Q ss_conf 74230258588304445532-4441232025555430246
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGAPM-LAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~~~-l~~~A~~qg~~aa~~i~~~ 351 (481)
+|+||+|||||+|||++.+. ...+|..+|-.||-+.+..
T Consensus 472 ~~~TnvpGVFAAGDvt~~~~kQi~~A~G~Ga~AAlsA~~Y 511 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 8707999879856673898667878666479999999998
No 39
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.5e-38 Score=298.71 Aligned_cols=296 Identities=20% Similarity=0.300 Sum_probs=200.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 8643489998985799999999987993999978888624632567370889999999999984211782134875-449
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKV-EFN 80 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~-~~~ 80 (481)
+++|||+||||||||++||++|+++|++++|||+...||.|.+.. .+.+. ++.+ .+.
T Consensus 4 ~k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~---------------~i~n~-------pg~~~~i~ 61 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT---------------EVENW-------PGDPNDLT 61 (321)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---------------CEEEC-------CCCCCCCC
T ss_conf 606009999976899999999998699679996059687420056---------------03561-------78887647
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
.+.+.++.++...++ +++++..+-.. +...+. ..........++++.+|||||+
T Consensus 62 G~~l~~~~~~q~~~~-----------~~~i~~~~v~~-------i~~~~~--------~f~v~t~~g~~~a~aViiAtG~ 115 (321)
T PRK10262 62 GPLLMERMHEHATKF-----------ETEIIFDHINK-------VDLQNR--------PFRLTGDSGEYTCDALIIATGA 115 (321)
T ss_pred HHHHHHHHHHHHHHH-----------CCEEEECCCCE-------EEEECC--------CEEEECCCCEEEEEEEEEEECC
T ss_conf 799999999999970-----------87489412315-------774036--------5199758988999899996468
Q ss_pred CCCCC--CCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCH
Q ss_conf 31110--1113-45554221245211133344432156543321000232101333100000000122222221222100
Q gi|254780675|r 161 RPRHI--EGIE-PDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQR 237 (481)
Q Consensus 161 ~p~~~--~g~~-~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~ 237 (481)
+|+.+ |+.+ ..++.+..+...-......++++|+|||..|+|.|.+|++++++||+++|++.+. .++...+.+.+
T Consensus 116 ~~r~l~ipge~~~~g~gv~~~~~cd~~~~~~k~VaViGgG~~A~d~A~~L~~~a~~V~lv~rr~~~~--a~~~~~~~~~~ 193 (321)
T PRK10262 116 SARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMD 193 (321)
T ss_pred CCCCCCCCCHHHHCCCCEEEEEEECCHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCC--CCHHHHHHHHH
T ss_conf 6553799971430688668988505300189879999188889999999997619899997446556--27889999997
Q ss_pred HHHHCCCCCCCCHHHHHHCCCCCCC-CEEEEEC--CCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECC--
Q ss_conf 1220123322100134420223431-0124403--6740211023224305742200002322211235732664248--
Q gi|254780675|r 238 SLQKRGIKILTESKISSVKQKGDMV-SVQVERK--DGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDG-- 312 (481)
Q Consensus 238 ~l~~~Gv~i~~~~~v~~v~~~~~~~-~v~~~~~--dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~-- 312 (481)
.+++.+|.++++..+.++..++.++ .+++... ..+.+++++|.+++++|+.||+..+ +..+++++|+|.||+
T Consensus 194 ~~e~~~i~~~~~~~i~~i~g~~~~v~gv~l~~~~~~~~~~~~~~d~v~v~~G~~pn~~~~---~~~l~l~~g~i~vd~~~ 270 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF---EGQLELENGYIKVQSGI 270 (321)
T ss_pred HHHCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCHHHH---CCCEECCCCEEEECCCC
T ss_conf 763585587437078999778765899999937778667998602389995576784775---58540239969968887
Q ss_pred ---CCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHHCC
Q ss_conf ---7423025858830444553-2444123202555543024
Q gi|254780675|r 313 ---YGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 313 ---~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i~~ 350 (481)
++|||+|+|||+|||++++ ..+..|..+|.+||.++..
T Consensus 271 ~~~~~~TsipGifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~~ 312 (321)
T PRK10262 271 HGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 678776898998999947789887687807858999999999
No 40
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=100.00 E-value=6e-39 Score=301.70 Aligned_cols=272 Identities=36% Similarity=0.545 Sum_probs=194.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 48999898579999999998799399997888862463256737088999999999998421178213487544999999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIV 85 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (481)
||+||||||||++||.+|++.|++|+|||+. ++.|.+++|+|++.+..... ...+.+...
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~--~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~- 60 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKE--GGTCYNRGCIPKKLLLEAAE-----------------VGKLDLRPL- 60 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCEEEECCCCCCCCCCCCC-----------------HHHHHHHHH-
T ss_conf 9999997699999999998499979999379--99357557747711645433-----------------145618999-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 99999999853446876301414210000-01122221002368752001355554322586389972455257543111
Q gi|254780675|r 86 KRSRDISHRLNRGVEFLMHKNKVDIIWGK-ATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRH 164 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~~ 164 (481)
....+.+++++.+. ....++..-.|. .....+++||++|||||++|+.
T Consensus 61 ---------------~~~~~~~i~~~~~~~v~~i~~~~~~v~----------------~~~g~~~~~d~lviAtG~~~~~ 109 (277)
T pfam07992 61 ---------------EQYKDEGIEVLLGTGVTAIDKAGKKVT----------------LDDGKELTYDKLVIATGARPRR 109 (277)
T ss_pred ---------------HHHHHCCCEEEECCEEEEEECCCCEEE----------------ECCCCEEECCEEEECCCCCCCC
T ss_conf ---------------999875979996877999978999899----------------8789399859999987998622
Q ss_pred C--CCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0--11134555422124521113334-44321565433210002321013331000000001222222212221001220
Q gi|254780675|r 165 I--EGIEPDSHLIWTYFDALKPSKTP-KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQK 241 (481)
Q Consensus 165 ~--~g~~~~~~~~~t~~~~l~l~~~p-~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 241 (481)
| ||.+..+....++.+++.+...| ++++|||||++|+|+|..|+++|.+||++++++++++..+++......+.+..
T Consensus 110 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~ 189 (277)
T pfam07992 110 PPIPGVELDGVFYLTSDDALALREKPKKRVVVVGGGYIGLELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEE 189 (277)
T ss_pred CCCCCCCCCCCEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 57787444562323699998756174566999799875999999999729937999865723444478999999999997
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECCC
Q ss_conf 123322100134420223431012440367402110232243057422000023222112357-3266424874230258
Q gi|254780675|r 242 RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVPG 320 (481)
Q Consensus 242 ~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p~ 320 (481)
.++..+....+.......+...... ..++..++++|.+++++|..|+.+ .+++.|++++ +|+|.||++||||+||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~g~~~~~~--~~~~~gl~~~~~G~I~vd~~~~Ts~~~ 265 (277)
T pfam07992 190 LGGVIVLLAKVEVVVEVVEGVVVKV--VLEDGIEADADLVAIGRGPNPNTL--LLEKAGLELDERGYIVVDEYLRTSVPG 265 (277)
T ss_pred HCCEEEEEEEEEEEEECCEEEEEEC--CCCEEEEEEEEEEEEEEEECCCCC--HHHHCCCCCCCCCCEEECCCCEECCCC
T ss_conf 3989999667889883003689860--565279970899999974158951--377779248899958679297409999
Q ss_pred CEEECCCCCCCC
Q ss_conf 588304445532
Q gi|254780675|r 321 IYAIGDVAGAPM 332 (481)
Q Consensus 321 IyA~GDv~g~~~ 332 (481)
|||+|||+++.+
T Consensus 266 VyA~GDva~g~~ 277 (277)
T pfam07992 266 IYAAGDVAEGRP 277 (277)
T ss_pred EEEEEECCCCCC
T ss_conf 999886889999
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=100.00 E-value=1.1e-36 Score=285.19 Aligned_cols=363 Identities=22% Similarity=0.325 Sum_probs=245.3
Q ss_pred EEEECCCHHHHHHHHHHH----HCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 899989857999999999----8799399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAA----QLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a----~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
+||||-|-+|.-+--... +..++++|+=.++ ++ .++++.-...+ .+ +.+.+
T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP-----------------~~--~YdRv~LSs~l----~G--~~~~~ 55 (813)
T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEP-----------------HP--AYDRVLLSSVL----QG--EADLE 55 (813)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------------CC--CCCCEEECEEE----CC--CCCHH
T ss_conf 97870474103477767512101773089982588-----------------95--43602211010----46--45577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
+ +.-.-..+.++.+|+++.|+- -++|++.. ....+..+++..||++|+||||.|
T Consensus 56 ~-----------l~L~~~D~y~~~~i~ly~ge~------vi~id~~~---------k~v~t~a~r~~~YD~LilATGS~p 109 (813)
T TIGR02374 56 D-----------LTLNSKDWYEKHGIKLYTGER------VIQIDREE---------KSVITDAGRTLSYDKLILATGSYP 109 (813)
T ss_pred H-----------CCCCCCCCCCCCCEEEEECCE------EEEEECCC---------CEEECCCCCCCCCCEEEEECCCCC
T ss_conf 8-----------066878831227548987688------89983576---------458704776335751787306657
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCC------CCCCC------CCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-CCCC
Q ss_conf 110111345554221245211133------34443------2156543321000232101333100000000122-2222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALKPSK------TPKSL------IVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDS 229 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~l~~------~p~~i------vIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-~~d~ 229 (481)
..||-...|.+.++-++++-+++. .-++- +|||||-.|+|-|..|..||.+|++||..+.||. +.|+
T Consensus 110 filPipG~D~~~v~~fRti~D~~A~~~~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~ 189 (813)
T TIGR02374 110 FILPIPGADKKGVYVFRTIEDLDAILAAAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQ 189 (813)
T ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH
T ss_conf 30866888888615870567999999999863126766785588674158899999987797064467648989999999
Q ss_pred CCCCCCCHHHHHCCCCCCC--CHHHHHHCCCC-CCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf 2122210012201233221--00134420223-431012440367402110232243057422000023222112357-3
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILT--ESKISSVKQKG-DMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-N 305 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~--~~~v~~v~~~~-~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~ 305 (481)
...+.|++.|++.||.|++ +.+-.++.+++ ....-+++++||+ +|++|.|++|+|.+||++ |+ .++||++. |
T Consensus 190 ~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~--~l~aDlvv~A~GirP~~~-LA-~~aGl~v~~R 265 (813)
T TIGR02374 190 TAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS--SLEADLVVFAAGIRPRDE-LA-AEAGLKVNDR 265 (813)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC--EEEECEEEEECCCCCCHH-HH-HHCCCCCCCC
T ss_conf 9999999999857957986176110576415640123122423897--887037999515666368-99-8659735476
Q ss_pred EEEEECCCCEEECCCCEEECCCCCC----CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHH
Q ss_conf 2664248742302585883044455----324441232025555430246644321223200245430334000149687
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGA----PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEK 381 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~----~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~e 381 (481)
|+|+||++||||.|+|||+|.|+.. +.|+-=-+.||.++|+||+|.+. .++.- +.|++ +
T Consensus 266 rGiivnd~~qTs~P~IYAvGEcA~~~G~~YGLVAPlY~~A~v~a~h~lG~~~-~~y~g-s~LSa---------------~ 328 (813)
T TIGR02374 266 RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHILGVET-EEYEG-SDLSA---------------K 328 (813)
T ss_pred CCEEECCCCCCCCCCEEEEEEEEEECCEEEEECCCCHHHHHHHHHHHCCCCC-CCCCC-CCHHH---------------H
T ss_conf 7678726223788873356655510885897107614789999998648987-76767-65456---------------5
Q ss_pred HHCCCCCEEE-EEEE-CCCCHHHH-CCCCCCE-EEEEEEECCCCEEEEEEEECCCH--HHHHHHHH
Q ss_conf 6107972799-9996-46382332-0789821-89999988998599999982998--89999999
Q gi|254780675|r 382 ARSQGLDIRV-GKHS-FSANGKAI-TLGEDSG-MIKTIFNNKTGEVLGVHMVGPEV--TELIQGFS 441 (481)
Q Consensus 382 a~~~g~~~~~-~~~~-~~~~~~~~-~~~~~~G-~~kiv~~~~~~~ilG~~~~g~~A--~eli~~~~ 441 (481)
+|=.|+||-. +... -++..+++ ++++..+ |-|+|+..+..+|+|+-+||.-. +.|.+.+.
T Consensus 329 LK~~GvdV~S~Gd~~G~~e~~~~~~~~De~~~iYkk~vl~~d~~TL~GavL~GD~s~~~~L~~~v~ 394 (813)
T TIGR02374 329 LKLLGVDVASAGDAQGETEEAKSIKIYDEQKGIYKKLVLSDDKKTLLGAVLVGDTSDYGRLLDMVL 394 (813)
T ss_pred HHHCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 403222455206544789984068887266451567888448826887899863055425888865
No 42
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=269.53 Aligned_cols=287 Identities=29% Similarity=0.407 Sum_probs=197.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC
Q ss_conf 643489998985799999999987993-9999788886246325673708899999999999842117821348754-49
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFK-VAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVE-FN 80 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~-V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~-~~ 80 (481)
++|||+||||||||++||+++++.+++ ++|+|+...||- |++ .. .+.+. ++.+. ..
T Consensus 2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~-------~~~-------~~-~veny-------pg~~~~~~ 59 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQ-------LTK-------TT-DVENY-------PGFPGGIL 59 (305)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------CCC-------CE-EECCC-------CCCCCCCC
T ss_conf 4228899895889999999998758985699947875886-------344-------33-33576-------79867775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
.+.++++.+.... ..+++++..+..-++.. .. .....+.+.+++++++|||||+
T Consensus 60 g~~L~~~~~~~a~-----------~~~~~~~~~~v~~v~~~-------~~--------~F~v~t~~~~~~ak~vIiAtG~ 113 (305)
T COG0492 60 GPELMEQMKEQAE-----------KFGVEIVEDEVEKVELE-------GG--------PFKVKTDKGTYEAKAVIIATGA 113 (305)
T ss_pred HHHHHHHHHHHHH-----------HCCEEEEEEEEEEEEEC-------CC--------EEEEEECCCEEEEEEEEECCCC
T ss_conf 0899999997776-----------34708888998998606-------86--------0999947974986569996177
Q ss_pred CCCCCCCC---CCCCCCC---CCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 31110111---3455542---21245211133344432156543321000232101333100000000122222221222
Q gi|254780675|r 161 RPRHIEGI---EPDSHLI---WTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQF 234 (481)
Q Consensus 161 ~p~~~~g~---~~~~~~~---~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~ 234 (481)
.++.|.-. +..++.+ .+++. +. ..++++|||||..++|-|-+|++.+++||+++|++.+-+ .+.
T Consensus 114 ~~~~~~~~~e~e~~g~gv~yc~~cdg-~~---~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~ 183 (305)
T COG0492 114 GARKLGVPGEEEFEGKGVSYCATCDG-FF---KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEI 183 (305)
T ss_pred CCCCCCCCCCHHHCCCCEEEEEECCC-CC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCC------CHH
T ss_conf 65678898725435887599773476-35---798499999987899999998853683999965866682------799
Q ss_pred CCHHHHHC-CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCC
Q ss_conf 10012201-23322100134420223431012440367402110232243057422000023222112357326642487
Q gi|254780675|r 235 VQRSLQKR-GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGY 313 (481)
Q Consensus 235 ~~~~l~~~-Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~ 313 (481)
+.+.+++. +|++++++.+.++..++ ...+.+++..|+.+++++|.+++++|..||++. +...++..++|+|+||+.
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~~~~~g~I~v~~~ 260 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGVLDENGYIVVDEE 260 (305)
T ss_pred HHHHHHHCCCEEEEECCEEEEECCCC-CCEEEEEECCCCEEEEEEEEEEEECCCCCCHHH--HHCCCCCCCCCCEECCCC
T ss_conf 99998735882899787035871666-326999935783689872579996178883466--530244368964872898
Q ss_pred CEEECCCCEEECCCCCCCC-CCCCCCCCHHHHHHHHCC
Q ss_conf 4230258588304445532-444123202555543024
Q gi|254780675|r 314 GRTNVPGIYAIGDVAGAPM-LAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 314 ~qTs~p~IyA~GDv~g~~~-l~~~A~~qg~~aa~~i~~ 350 (481)
||||+|+|||+|||+..+. +.-.|..+|..||.++..
T Consensus 261 ~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 261 METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAER 298 (305)
T ss_pred CEECCCCEEECHHHCCCCCCEEEEHHCCHHHHHHHHHH
T ss_conf 27045888986233156321220021538999999998
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-34 Score=268.50 Aligned_cols=292 Identities=25% Similarity=0.417 Sum_probs=208.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 4899989857999999999879--93999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
-|||||||.||+.+|..+.+.- .+++|||+..+ -+-+.|++.. ..+. ++..+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~---------hl~~plL~ev---------------a~g~--l~~~~ 58 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---------HLFTPLLYEV---------------ATGT--LSESE 58 (405)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CCCCHHHHHH---------------HCCC--CCHHH
T ss_conf 69998986799999997641678871899918876---------6663033556---------------3287--77565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999998534468763014-14210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKN-KVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
+ ...++.++++. +|++++++..-+|...-+|...+ ...+.||++|||+||.+
T Consensus 59 i-----------~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~----------------~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 59 I-----------AIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD----------------LGEISYDYLVVALGSET 111 (405)
T ss_pred E-----------ECCHHHHHCCCCCEEEEEEEEEEECCCCCEEEECC----------------CCCCCCCEEEEECCCCC
T ss_conf 2-----------13089984235744899978999715679899578----------------87023638999458766
Q ss_pred C--CCCCCCCCCCCCCCCCCCEEC-----------CCCCC-----CCCCCCCCCCCCCCHHHHHCC-------------C
Q ss_conf 1--101113455542212452111-----------33344-----432156543321000232101-------------3
Q gi|254780675|r 163 R--HIEGIEPDSHLIWTYFDALKP-----------SKTPK-----SLIVMGSGAIGVEFSSFYKSL-------------D 211 (481)
Q Consensus 163 ~--~~~g~~~~~~~~~t~~~~l~l-----------~~~p~-----~ivIiGgG~ig~E~A~~l~~l-------------G 211 (481)
. .+||+......+.+.+|++.+ ...++ .++|+|||++|+|||..++.+ .
T Consensus 112 ~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~ 191 (405)
T COG1252 112 NYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSE 191 (405)
T ss_pred CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76899787870777788999999999999999986335643441189998988238999999999999876533478653
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 33100000000122222221222100122012332210013442022343101244036740211023224305742200
Q gi|254780675|r 212 VDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 212 ~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
.+|+|||+++++||.+++++++++++.|++.||++++++.|+++++++ |+++ +|+. +|++|.++||+|.+|+.
T Consensus 192 ~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~--~g~~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 192 LRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLK--DGEE-EIPADTVVWAAGVRASP 264 (405)
T ss_pred CEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEEC--CCCE-EEECCEEEECCCCCCCH
T ss_conf 189998257121358888999999999998797898698148976991----7975--5883-77627799857775786
Q ss_pred ECCCCCC-CCCCCCC-EEEEECCCCEE-ECCCCEEECCCCC------CCCCCCCCCCCHHHHHHHHCCCC---CCCCCCC
Q ss_conf 0023222-1123573-26642487423-0258588304445------53244412320255554302466---4432122
Q gi|254780675|r 292 ENIGLEK-IGVKTSN-GCIIVDGYGRT-NVPGIYAIGDVAG------APMLAHKAEHEGIICIEKIAGKS---KVYPLDK 359 (481)
Q Consensus 292 ~~L~Le~-~gi~~~~-g~i~vd~~~qT-s~p~IyA~GDv~g------~~~l~~~A~~qg~~aa~~i~~~~---~~~~~d~ 359 (481)
- +++ .|.+.++ |.+.||++||+ ++|+|||+|||+. .|+.+..|.+||.+++.||...- +..|+.|
T Consensus 265 ~---~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 265 L---LKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred H---HHHCCHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6---6632702213489777578751699898699711103768887998118899999999999999964999988852
Q ss_pred C
Q ss_conf 3
Q gi|254780675|r 360 S 360 (481)
Q Consensus 360 ~ 360 (481)
.
T Consensus 342 ~ 342 (405)
T COG1252 342 K 342 (405)
T ss_pred C
T ss_conf 0
No 44
>PRK11749 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=263.54 Aligned_cols=276 Identities=28% Similarity=0.414 Sum_probs=187.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||||||||+||.+|+++|.+|+|+|+ +.+||. +++| ||. +.++ .
T Consensus 142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl-l~~G-IP~----------------------------~rlpk~ 191 (460)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL-LRYG-IPE----------------------------FRLPKD 191 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CCC----------------------------CCCCHH
T ss_conf 8999896789999999999769847997047878755-7545-899----------------------------755447
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CC
Q ss_conf 99999999998534468763014142100000112222100236875200135555432258638997245525754-31
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-RP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~p 162 (481)
++++. + ..+.+.||++..++.. +. .+++. +-.-.+|.|+||||+ .|
T Consensus 192 v~~~e----------i-~~i~~~GV~~~~n~~v--G~-ditl~-------------------~L~~~ydAV~lAtGa~~~ 238 (460)
T PRK11749 192 IVDRE----------V-ERLLKLGVEIRTNTAV--GR-DITLD-------------------ELRAEYDAVFIGTGLGLP 238 (460)
T ss_pred HHHHH----------H-HHHHHCCCEEECCEEE--CC-CCCHH-------------------HHHHCCCEEEEECCCCCC
T ss_conf 99999----------9-9998539789855585--66-43288-------------------774114889994478988
Q ss_pred CCCCCCCCCCCCCCCCCCCEE------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCCC-CCCCC
Q ss_conf 110111345554221245211------------13334443215654332100023210133-31000000001-22222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK------------PSKTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDRI-LPVED 228 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~------------l~~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~l-l~~~d 228 (481)
+.++....+...+++.-++|. ....+++++|||||.+|++.|..+.++|. +|++++|+++- +|..+
T Consensus 239 r~l~ipGe~~~GV~~a~dfL~~~~~~~~~~~~~~~~~Gk~VvVIGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~ 318 (460)
T PRK11749 239 RFLGIPGENLGGVYSAVDFLTRVNQDAVADDDTLIAVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASE 318 (460)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCH
T ss_conf 64799986688878989999997436544457755448748998984669998999998289846330007520099899
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC-EEEE---------------ECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 22122210012201233221001344202234310-1244---------------0367402110232243057422000
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS-VQVE---------------RKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~-v~~~---------------~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
.++ +..+++||+|++.+.+.++..+++.+. +++. ..+|+..++++|.|++|+|+.|+..
T Consensus 319 ~Ei-----~~A~~eGv~~~~~~~p~ei~~~~~~v~gv~~~~~~l~~~d~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~ 393 (460)
T PRK11749 319 EEV-----EHAKEEGVEFVWLAAPVAILGDEGRVTGVKFERMELGEPDAGRRRPVPIEGSEFTLEADMVIKAIGQTPNPL 393 (460)
T ss_pred HHH-----HHHHHCCEEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCC
T ss_conf 999-----988745708882668789996599579999999886157778735240799579998999999987898841
Q ss_pred CCCCCCCCCCCC-CEEEEE-CCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 023222112357-326642-4874230258588304445532444123202555543024
Q gi|254780675|r 293 NIGLEKIGVKTS-NGCIIV-DGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 293 ~L~Le~~gi~~~-~g~i~v-d~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
.+ .+..|++++ +|.+++ |+++|||.|+|||+|||..++.++..|+.+|+.||..|..
T Consensus 394 ~~-~~~~g~~~~~~g~i~~~d~~~~Ts~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~~ 452 (460)
T PRK11749 394 IL-ATTPGLAVTRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIHE 452 (460)
T ss_pred CC-CCCCCCEECCCCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 00-346681276899988468997228999999458776705999999999999999999
No 45
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=5.7e-34 Score=265.55 Aligned_cols=275 Identities=21% Similarity=0.353 Sum_probs=192.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||+||||++||..|++.|.+|+|+|+ +.+||- + .||| |+|.++ +
T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm-L------------------------~yGI-----P~fRLPk~ 601 (1032)
T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGV-V------------------------KNII-----PEFRIPAE 601 (1032)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 7999896889999999999779936998158978842-6------------------------7358-----87678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++. + .++++.||++..+.++- +++... ..=.+|.|+||||++ |
T Consensus 602 vIdre----------I-~~l~~~GV~f~tnvg~d-----itle~L------------------~~eGyDAVfLa~GA~~~ 647 (1032)
T PRK09853 602 LIQHD----------I-DFVAAHGVKFEYGCSPD-----LTVEQL------------------KNQGYHYVLLAIGADKN 647 (1032)
T ss_pred HHHHH----------H-HHHHHCCCEEEECCCCC-----CCHHHH------------------HHCCCCEEEEECCCCCC
T ss_conf 99999----------9-99997796999699998-----889999------------------65799999994588988
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-------CCCCCCCCCCCCCCCCCCCCHHHHHCC-CC-CCCCEECCCC-CCCCCCCCCC
Q ss_conf 110111345554221245211-------133344432156543321000232101-33-3100000000-1222222212
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK-------PSKTPKSLIVMGSGAIGVEFSSFYKSL-DV-DVSLIEVKDR-ILPVEDSEIS 232 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~-------l~~~p~~ivIiGgG~ig~E~A~~l~~l-G~-~Vtli~~~~~-ll~~~d~~~~ 232 (481)
+.+ +++.....++..-++|. ...+.++++|||||.+||..|....|+ |+ +|++++|+.+ -+|..+.++
T Consensus 648 r~L-~IpGe~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtivYRRt~~eMPA~~eEi- 725 (1032)
T PRK09853 648 GGL-KLAGDNQNVWKSLPFLREYNKGTADLKLGKHVVVVGAGNTAMDCARAALRVPGVEKVTVVYRRTLKEMPAWREEY- 725 (1032)
T ss_pred CCC-CCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHH-
T ss_conf 879-999865780777999998743898766899389989847999999998750688658996058632089998999-
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC------------CCCEEEEECCCEEECCCCEEEEECCCCCCCC
Q ss_conf 2210012201233221001344202234310124403------------6740211023224305742200002322211
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK------------DGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~------------dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g 300 (481)
. ...++||++++.+.+.++..++......++.. .|+..++++|.||.|+|..|+... ++..|
T Consensus 726 ---e-~A~eEGVef~~L~aP~~i~~dG~l~~~~M~LGEpDasGRrrPV~~Ge~~~i~aDtVI~AIGq~~d~~~--le~~G 799 (1032)
T PRK09853 726 ---E-EALHDGVEFKFLLNPESFDADGTLTCRVMSLGEPDASGRRRPVETGETVTLHADTLITAIGEQVDTEL--LNAMG 799 (1032)
T ss_pred ---H-HHHHCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCC--CCCCC
T ss_conf ---9-88754749998018869943785899999976858888876506996489988999998878998651--02568
Q ss_pred CCCC-CEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 2357-326642487423025858830444553244412320255554302466
Q gi|254780675|r 301 VKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 301 i~~~-~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~ 352 (481)
|+++ +|.|.||+.+|||.|+|||+|||..++.++-.|+.+|+.||+.|+++.
T Consensus 800 Ield~~G~I~vDe~~~TS~pGVFAaGD~v~GpSTVV~AIadGRkAA~aIl~~~ 852 (1032)
T PRK09853 800 IPLDKNGWPDVNHNGETNLTNVFMIGDVQRGPSSIVAAIADARRATDAILSRE 852 (1032)
T ss_pred CEECCCCCEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11889998877989987899977730767677899999999999999998532
No 46
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=100.00 E-value=9.3e-34 Score=263.99 Aligned_cols=278 Identities=27% Similarity=0.371 Sum_probs=203.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 643489998985799999999987993999978-8886246325673708899999999999842117821348754499
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI 81 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (481)
.++-|+|||+|||||++|-.+|+.|++|+++|- +..||- +. ||+ |++.+
T Consensus 141 t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~------------------------YGI-----PefRL 190 (462)
T TIGR01316 141 TKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LA------------------------YGI-----PEFRL 190 (462)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE------------------------ECC-----CCCCC
T ss_conf 8877999846821468899997479869999714899856-75------------------------368-----88548
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99-99999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 82 ED-IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
++ ++.+ .+ ..|++.||++..++ ++. ++++...- -..|-+|.|.|+||+
T Consensus 191 pKei~~~---E~--------k~LkklGv~fr~~~--lvG-kt~TL~eL-----------------~~~YGfDAVFIgtGA 239 (462)
T TIGR01316 191 PKEIVET---EV--------KKLKKLGVKFRTDY--LVG-KTVTLEEL-----------------LEKYGFDAVFIGTGA 239 (462)
T ss_pred CHHHHHH---HH--------HHHHHCCEEEEECC--EEC-CCHHHHHH-----------------HHHCCCCEEEEEECC
T ss_conf 7578898---88--------87632663799443--750-51128888-----------------875197079995068
Q ss_pred -CCC--CCCCCCCCCCCCCCCCCCE------ECCCC-----C----CCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCC
Q ss_conf -311--1011134555422124521------11333-----4----4432156543321000232101333-10000000
Q gi|254780675|r 161 -RPR--HIEGIEPDSHLIWTYFDAL------KPSKT-----P----KSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKD 221 (481)
Q Consensus 161 -~p~--~~~g~~~~~~~~~t~~~~l------~l~~~-----p----~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~ 221 (481)
+|+ ++||... ..+++..|+| ...++ | |+++|||||++|+..|....|||.+ ||+++|+.
T Consensus 240 G~pkl~NipG~~L--~gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrt 317 (462)
T TIGR01316 240 GLPKLLNIPGEEL--KGVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRT 317 (462)
T ss_pred CCCEECCCCCHHH--CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9870016784343--40022346887777765423667887565447689987853678777666452842369988547
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC--EEEEECC----------------CCEEEEECCCEEE
Q ss_conf 012222222122210012201233221001344202234310--1244036----------------7402110232243
Q gi|254780675|r 222 RILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS--VQVERKD----------------GSVSSMQAEKLLL 283 (481)
Q Consensus 222 ~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~--v~~~~~d----------------G~~~~i~~D~vl~ 283 (481)
| .|-...+.=-++++++||+|+|=.+..++-+++++-. |.+...+ ++...|++|.|++
T Consensus 318 R----edmtAr~EEi~ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~ 393 (462)
T TIGR01316 318 R----EDMTAREEEIKHAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIV 393 (462)
T ss_pred C----CCCHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEE
T ss_conf 7----751366999998853892899874216898657651899998853768811457812430499517886265999
Q ss_pred CCCCEEEEECCCCCCC-CCCCC-CEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 0574220000232221-12357-326642487423025858830444553244412320255554302
Q gi|254780675|r 284 SAGVQGNIENIGLEKI-GVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 284 a~Gr~Pn~~~L~Le~~-gi~~~-~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
|+|..||- |-.+.. +|+++ +|.|.|||.++||.|||||-||++.+-..+-.|+.||+.||..|-
T Consensus 394 AiG~~~Np--i~~e~~r~lkt~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~ 459 (462)
T TIGR01316 394 AIGQEANP--IIAEDSRSLKTSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID 459 (462)
T ss_pred EECCCCCC--EEEECCCEEEECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf 74589883--0330673333458865787476304767574267277458669985003568999874
No 47
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=3.8e-33 Score=259.56 Aligned_cols=274 Identities=22% Similarity=0.366 Sum_probs=190.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||+|||||+||.+|+++|.+|+|+|+ +.+||- -.||| |++.++ +
T Consensus 195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm-------------------------lryGI-----P~yRLPk~ 244 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM-------------------------MRYGI-----PRFRLPES 244 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-------------------------EEECC-----CCCCCCHH
T ss_conf 7999683789999999999779906998158888986-------------------------76448-----63338999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++. ++. +.+.||++..+..- + ..+++.. . .-.+|.++||+|++ +
T Consensus 245 vld~E----------I~~-i~~~GV~~~~n~~v--G-~ditl~~----------------L---~~~yDAVflaiGa~~~ 291 (652)
T PRK12814 245 VIDAD----------IAP-LRAMGAEFRFNTVF--G-RDITLEE----------------L---QKEFDAVLLAVGAQKA 291 (652)
T ss_pred HHHHH----------HHH-HHHCCCEEEEEEEE--C-CCCCHHH----------------H---HHHCCEEEEEECCCCC
T ss_conf 99999----------999-99719858866794--7-7477999----------------9---8658999997557877
Q ss_pred CCCCCCCCCCCCCCCCCCCEE------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCC-CCCCCCCCCCCC
Q ss_conf 110111345554221245211------133344432156543321000232101333-100000000-122222221222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK------PSKTPKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDR-ILPVEDSEISQF 234 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~------l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~-ll~~~d~~~~~~ 234 (481)
+.++-...+...++..-++|. ...+.++++|||||.+|+..|....|+|.+ ||+++|+.+ -||..+.++
T Consensus 292 r~L~ipGedl~gV~~avdfL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei--- 368 (652)
T PRK12814 292 SKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI--- 368 (652)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHH---
T ss_conf 44798888787727689999985269866678852486688138999999987489758998337633199986777---
Q ss_pred CCHHHHHCCCCCCCCHHHHHHCCCCCCCCEE---EEE-------------CCCCEEEEECCCEEECCCCEEEEECCCCCC
Q ss_conf 1001220123322100134420223431012---440-------------367402110232243057422000023222
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSVKQKGDMVSVQ---VER-------------KDGSVSSMQAEKLLLSAGVQGNIENIGLEK 298 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~---~~~-------------~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~ 298 (481)
... .++||+|++.+.+.++..+++++.++ +.. .+|+..++++|.|++|+|..++... ++.
T Consensus 369 -~eA-~eEGV~~~~l~~P~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~~--~~~ 444 (652)
T PRK12814 369 -EEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEA 444 (652)
T ss_pred -HHH-HHCCCCEEECCCCEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCH--HHC
T ss_conf -788-8679846976155899986896899999999968878897724565996699617889984587888332--224
Q ss_pred CCCCCCC-EEEEEC-CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 1123573-266424-87423025858830444553244412320255554302
Q gi|254780675|r 299 IGVKTSN-GCIIVD-GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 299 ~gi~~~~-g~i~vd-~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
.|+++++ |.|.+| +++|||.|+|||+||+..++.++-.|..+|+.||.+|-
T Consensus 445 ~gl~~~~~G~i~vd~~t~~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~Id 497 (652)
T PRK12814 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 58636689988858888743999999898887684499999999999999999
No 48
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=3.1e-33 Score=260.17 Aligned_cols=275 Identities=21% Similarity=0.378 Sum_probs=189.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||+||||++||..|++.|.+|+|+|+ +.+||- + .||| |+|.++ +
T Consensus 539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm-L------------------------~yGI-----P~fRLPke 588 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV-V------------------------KNII-----PEFRISAE 588 (1012)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 8999897789999999999779956998158978854-7------------------------8558-----87778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++. ++ ++++.||++..|.++ .+++... ..=.+|.|+||||+. |
T Consensus 589 vI~re----------I~-~i~~~GV~f~tnvg~-----ditleeL------------------~~egYDAVfLa~GA~~~ 634 (1012)
T TIGR03315 589 SIQKD----------IE-LVKFHGVEFKYGCSP-----DLTVAEL------------------KNQGYKYVILAIGAWKH 634 (1012)
T ss_pred HHHHH----------HH-HHHHCCEEEEECCCC-----CCCHHHH------------------HHCCCCEEEEECCCCCC
T ss_conf 99999----------99-999689699979988-----8889999------------------65899999995689988
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-------CCCCCCCCCCCCCCCCCCCCHHHHHCC-CC-CCCCEECCCC-CCCCCCCCCC
Q ss_conf 110111345554221245211-------133344432156543321000232101-33-3100000000-1222222212
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK-------PSKTPKSLIVMGSGAIGVEFSSFYKSL-DV-DVSLIEVKDR-ILPVEDSEIS 232 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~-------l~~~p~~ivIiGgG~ig~E~A~~l~~l-G~-~Vtli~~~~~-ll~~~d~~~~ 232 (481)
+.++ ++.+...++..-++|. ...+.|+++|||||.+||..|....|+ |+ +|++++|+.+ -+|..+.++
T Consensus 635 r~L~-IpGd~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtvvYRRt~~eMPA~~eEi- 712 (1012)
T TIGR03315 635 GPLR-LEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL- 712 (1012)
T ss_pred CCCC-CCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHHH-
T ss_conf 7799-99765685867999997211799656899589989847999999998750788757998258621089998999-
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC------------CCCEEEEECCCEEECCCCEEEEECCCCCCCC
Q ss_conf 2210012201233221001344202234310124403------------6740211023224305742200002322211
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK------------DGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~------------dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g 300 (481)
.. ..++||++++...+.+++ ++......++.. .|+..++++|.|+.|+|..|++.. +++.|
T Consensus 713 ---e~-A~EEGVef~~L~aP~~ie-dG~l~~~~m~LgepD~sGRrrPv~~ge~~~i~aDtVI~AIGQ~~d~~~--l~~~G 785 (1012)
T TIGR03315 713 ---EE-ALEDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNG 785 (1012)
T ss_pred ---HH-HHHCCEEEEEEECCEEEE-CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCH--HHCCC
T ss_conf ---87-775381799954885898-887999999976727888887517996489988999998788998540--21248
Q ss_pred CCCC-CEEEEECC-CCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 2357-32664248-74230258588304445532444123202555543024664
Q gi|254780675|r 301 VKTS-NGCIIVDG-YGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSK 353 (481)
Q Consensus 301 i~~~-~g~i~vd~-~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~ 353 (481)
|+++ +|.|.+|+ ++|||.|+|||+|||..++.++-.|+.+|+.||+.|+++..
T Consensus 786 Ield~rG~I~vD~~t~~TS~pGVFAaGD~v~GpstVV~AIadGR~AA~aIl~~e~ 840 (1012)
T TIGR03315 786 IPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CEECCCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4088998988688878789999888006675778999999999999999986433
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=255.02 Aligned_cols=278 Identities=23% Similarity=0.337 Sum_probs=186.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH--
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999--
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-- 82 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-- 82 (481)
-|+|||+|||||+||.+|+++|.+|+|+|+ +.+||.. .+| || ++.++
T Consensus 142 kVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l-~yG-IP----------------------------~~RLpk~ 191 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVL-VYG-IP----------------------------EFRLPKE 191 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE-EEC-CC----------------------------CCCCCHH
T ss_conf 89998976899999999997699179982788889804-451-68----------------------------8876678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-
Q ss_conf 9999999999985344687630141421000001122221002368752001355554322586389972455257543-
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR- 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~- 161 (481)
+++++.-+ .+.+.||++..+... + ..+++.. . ...-.+|.|+||||+.
T Consensus 192 ~vl~~ei~-----------~l~~~GV~~~~n~~v--G-~dis~~~---------------L--~~~~~yDAV~la~Ga~~ 240 (464)
T PRK12831 192 TVVKKEIE-----------NIKKLGVKIETNVIV--G-RTVTIDE---------------L--LEEEGFDAVFIGSGAGL 240 (464)
T ss_pred HHHHHHHH-----------HHHHCCCEEEECCCC--C-CCCCHHH---------------H--HHCCCCCEEEEECCCCC
T ss_conf 99999999-----------998529389915742--7-8767999---------------9--63569988999448887
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEC--------------CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCC-CCCC
Q ss_conf 11101113455542212452111--------------33344432156543321000232101333100000000-1222
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALKP--------------SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDR-ILPV 226 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~l--------------~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~-ll~~ 226 (481)
|+.++....+...+++.-++|.. ....++++|||||.+|+..|....|+|++|++++|+++ -+|.
T Consensus 241 ~r~l~ipG~~~~gV~~a~~fL~~~n~~~~~~~~~~~~~~~Gk~VvVIGGGntA~D~arta~R~GaeV~ivyrr~~~~mpa 320 (464)
T PRK12831 241 PKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA 320 (464)
T ss_pred CCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 64378887668886897999999873001266566742258778998885568999998874297799970457213898
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCC--CEE---EEE-------------CCCCEEEEECCCEEECCCCE
Q ss_conf 222212221001220123322100134420223431--012---440-------------36740211023224305742
Q gi|254780675|r 227 EDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMV--SVQ---VER-------------KDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 227 ~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~--~v~---~~~-------------~dG~~~~i~~D~vl~a~Gr~ 288 (481)
... .+ +...++||++++.+.+.++..++++. -++ ++. .+|+..++++|.|++|+|..
T Consensus 321 ~~~----E~-~~a~eeGv~~~~~~~p~~i~~~e~G~v~gv~~~~~~l~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~ 395 (464)
T PRK12831 321 RVE----EV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVMEVDTVIMSLGTS 395 (464)
T ss_pred CHH----HH-HHHHHCCCEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEECCCCC
T ss_conf 701----23-3787489789965685588754888388789999884355788877137649937999899999998689
Q ss_pred EEEECCCCCCCCCCCC-CEEEEEC-CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 2000023222112357-3266424-874230258588304445532444123202555543024
Q gi|254780675|r 289 GNIENIGLEKIGVKTS-NGCIIVD-GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 289 Pn~~~L~Le~~gi~~~-~g~i~vd-~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
|+...+ .+..|++++ +|.|.+| ++++||.|+|||+|||..++.++..|..+|+.||..|..
T Consensus 396 ~~~~~~-~~~~gi~~~~~g~i~~~~~~~~Ts~~gVFa~GD~~~G~~~vV~Ai~~Gr~AA~~I~~ 458 (464)
T PRK12831 396 PNPLIS-STTPGLEINKRGCIVADEETGLTSIEGVYAGGDAVTGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CCCCCC-CCCCCEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 874300-136680277999888478998428999998278676833999999999999999999
No 50
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=4.3e-33 Score=259.15 Aligned_cols=283 Identities=20% Similarity=0.291 Sum_probs=194.8
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 489998985799999999987---99399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL---GFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~---G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
.|||||||.||+.+|.++++. +.+|+|||++..= .+..|.|. .+ .+. ++.+
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~---~y~~~lp~-----------~~----------~g~--~~~~ 54 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT---PYSGMLPG-----------MI----------AGH--YSLD 54 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC---EECCHHHH-----------HH----------HCC--CCHH
T ss_conf 9999996099999999970417899839999998865---16251699-----------97----------404--7799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
++ .-.++.++.+.++++++++..-+|+..=+|...+ ..++.||++||||||+|
T Consensus 55 ~i-----------~~~~~~~~~~~gv~~i~~~V~~ID~~~k~V~~~~----------------g~~l~YD~LViAtGs~~ 107 (364)
T TIGR03169 55 EI-----------RIDLRRLARQAGARFVIAEATGIDPDRRKVLLAN----------------RPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HE-----------ECCHHHHHHHCCCEEEEEEEEEEECCCCEEEECC----------------CCEEECCEEEEECCCCC
T ss_conf 92-----------2168999977794999637899976889899889----------------98873688999436777
Q ss_pred CCC--CCCCCCCCCCCCCCCCE----------ECCCCCCCCCCCCCCCCCCCCHHHHHC----CCCCC-CCEECCCCCCC
Q ss_conf 110--11134555422124521----------113334443215654332100023210----13331-00000000122
Q gi|254780675|r 163 RHI--EGIEPDSHLIWTYFDAL----------KPSKTPKSLIVMGSGAIGVEFSSFYKS----LDVDV-SLIEVKDRILP 225 (481)
Q Consensus 163 ~~~--~g~~~~~~~~~t~~~~l----------~l~~~p~~ivIiGgG~ig~E~A~~l~~----lG~~V-tli~~~~~ll~ 225 (481)
..+ ||.......+.+-++++ ....-+.+++|+|||++|+|+|..++. .|.+. .+++..+++|+
T Consensus 108 ~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~ 187 (364)
T TIGR03169 108 PLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLP 187 (364)
T ss_pred CCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 88999972026422477999999999999876405799645897858179999999999987468742799835775101
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-
Q ss_conf 2222212221001220123322100134420223431012440367402110232243057422000023222112357-
Q gi|254780675|r 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS- 304 (481)
Q Consensus 226 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~- 304 (481)
.+++.+++.+++.|++.||++++++.+++++.+. +. +.|| +++++|.++|++|.+||. .+.+.+++.+
T Consensus 188 ~~~~~~~~~~~~~l~~~gI~v~~~~~v~~v~~~~----v~--l~~g--~~i~~d~vi~~~G~~p~~---~~~~~~l~~d~ 256 (364)
T TIGR03169 188 GFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA----LI--LADG--RTLPADAILWATGARAPP---WLAESGLPLDE 256 (364)
T ss_pred HCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCC----EE--ECCC--CEEEEEEEEECCCCCCCH---HHHHCCCCCCC
T ss_conf 2599999999999997795698375368977995----18--3799--789630899888877886---57744663078
Q ss_pred CEEEEECCCCEE-ECCCCEEECCCCCC-----CCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 326642487423-02585883044455-----3244412320255554302466
Q gi|254780675|r 305 NGCIIVDGYGRT-NVPGIYAIGDVAGA-----PMLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 305 ~g~i~vd~~~qT-s~p~IyA~GDv~g~-----~~l~~~A~~qg~~aa~~i~~~~ 352 (481)
+|+|.||++||+ +.|||||+|||+.. |+.+..|.+||.++|+||...-
T Consensus 257 ~G~I~Vd~~lq~~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~~l 310 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CCCEEECCCCEECCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 997887887376899999997154368899999743889999999999999996
No 51
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=3.2e-32 Score=252.88 Aligned_cols=280 Identities=24% Similarity=0.335 Sum_probs=183.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-H
Q ss_conf 3489998985799999999987993999978-8886246325673708899999999999842117821348754499-9
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNI-E 82 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~-~ 82 (481)
.-|+|||+|||||+||.+|+++|.+|+|+|+ +.+||. .+-+||+ +.+ .
T Consensus 144 kkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGl--l~yGIP~----------------------------~RLpk 193 (472)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGL--LRYGIPD----------------------------FKLEK 193 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC----------------------------CCCCH
T ss_conf 98999897789999999998669758997257777754--6531788----------------------------55535
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-C
Q ss_conf 999999999998534468763014142100000112222100236875200135555432258638997245525754-3
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-R 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~ 161 (481)
+++++.. ..++..||++..+... +. .+++. .. .-.+|.++||||+ .
T Consensus 194 ~v~~~ei-----------~~l~~~GV~~~~n~~V--G~-dit~~----------------~L---~~~yDAV~la~Ga~~ 240 (472)
T PRK12810 194 DVIDRRI-----------ELMEGEGIEFRTGVEV--GK-DITAE----------------QL---LAEYDAVFLGGGAYK 240 (472)
T ss_pred HHHHHHH-----------HHHHHCCCEEEECEEC--CC-CCCHH----------------HH---HCCCCEEEEECCCCC
T ss_conf 8999999-----------9998579789905231--87-57699----------------98---505798999037787
Q ss_pred CCCCCCCCCCCCCCCCCCCCEE--------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCCCCCC
Q ss_conf 1110111345554221245211--------------13334443215654332100023210133-31000000001222
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALK--------------PSKTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDRILPV 226 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~--------------l~~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~ll~~ 226 (481)
|+.++....+...++..-++|. .....++++|||||.+|++.|....|+|. +|+..+..+ +|.
T Consensus 241 ~r~l~ipG~~~~GV~~A~dfL~~~~~~~~~~~~~~~~~~~Gk~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~--mp~ 318 (472)
T PRK12810 241 PRDLGIPGRDLDGVHFAMDFLIQNTRVLGGEKDEPFILAKGKHVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMP--MPP 318 (472)
T ss_pred CCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC--CCC
T ss_conf 852787776678858869999999875337876666322476589989866899999999973896899975114--881
Q ss_pred CCCCCCCC--------CCHHHHHCCCCCCCCHHHHHHCCCCCCCC-EEE---EE---------CCCCEEEEECCCEEECC
Q ss_conf 22221222--------10012201233221001344202234310-124---40---------36740211023224305
Q gi|254780675|r 227 EDSEISQF--------VQRSLQKRGIKILTESKISSVKQKGDMVS-VQV---ER---------KDGSVSSMQAEKLLLSA 285 (481)
Q Consensus 227 ~d~~~~~~--------~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~-v~~---~~---------~dG~~~~i~~D~vl~a~ 285 (481)
.+++.... -.+..+++||+++++..+.++..+++.+. +++ .. ..|+++++++|.|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~ev~~A~eEGv~~~~~~~p~~i~~~~g~v~gv~~~~~~~~~g~~~~~~~~g~e~~i~aD~VI~Ai 398 (472)
T PRK12810 319 SRRNKNNPWPYWPMKFEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVETELGKGRRKFEPVPGSEFVLPADLVLLAM 398 (472)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCEEECCCCEEEEECCEEEECC
T ss_conf 32332372323346888999997488257335736998149869999999977617887625669954999899999988
Q ss_pred CCEEEEECCCCCCCCCCCC-CEEEEECC-CCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 7422000023222112357-32664248-74230258588304445532444123202555543024
Q gi|254780675|r 286 GVQGNIENIGLEKIGVKTS-NGCIIVDG-YGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 286 Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~-~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
|+.|+...| +++.||+++ +|.|.+|+ .+|||.|+|||+|||..++.++..|+.+|+.||..|-.
T Consensus 399 Gq~~~~~~~-~~~~gl~~d~~G~i~vd~~~~~Ts~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~~ 464 (472)
T PRK12810 399 GFTGPEPEW-LAQFGVELDERGRVAADEGAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA 464 (472)
T ss_pred CCCCCCCCC-CCCCCCEECCCCCEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 888886322-225680287999888689987459999998368777816999999999999999999
No 52
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.3e-32 Score=255.64 Aligned_cols=277 Identities=21% Similarity=0.299 Sum_probs=188.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|.|||+|||||+||..|+++|.+|+|+|+ +.+||. + .||| |+|.++ +
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGl-L------------------------~yGI-----P~fRLPK~ 361 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-L------------------------TFGI-----PPFKLDKT 361 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 8999897589999999999759906999368888986-8------------------------5358-----74527778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CC
Q ss_conf 99999999998534468763014142100000112222100236875200135555432258638997245525754-31
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-RP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~p 162 (481)
++++.. .+++..||++..+... + ..+++. .. .-.+|.|+||||+ .|
T Consensus 362 vv~rei-----------~~l~~lGV~f~~n~~V--G-kDit~~----------------eL---~~~yDAVflg~Ga~~~ 408 (639)
T PRK12809 362 VLSQRR-----------EIFTAMGIDFHLNCEI--G-RDITFS----------------DL---TSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHH-----------HHHHHCCCEEEECCEE--C-CCCCHH----------------HH---HHHCCEEEEEECCCCC
T ss_conf 999999-----------9998649889919677--9-868899----------------99---7317989997367888
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-----------CCCC------CCCCCCCCCCCCCCCCHHHHHCCC-CCCCCEECCCCC-
Q ss_conf 110111345554221245211-----------1333------444321565433210002321013-331000000001-
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK-----------PSKT------PKSLIVMGSGAIGVEFSSFYKSLD-VDVSLIEVKDRI- 223 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~-----------l~~~------p~~ivIiGgG~ig~E~A~~l~~lG-~~Vtli~~~~~l- 223 (481)
+.++....+...++..-++|. ..+. .|+++|||||.+||..|....|+| .+|++++|+++-
T Consensus 409 ~~l~IpGedl~GV~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~e 488 (639)
T PRK12809 409 MRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS 488 (639)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 54898877787838769999999986438864445775455677799989982189999999983998775215477457
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC--E---EEEE----C---------CCCEEEEECCCEEECC
Q ss_conf 2222222122210012201233221001344202234310--1---2440----3---------6740211023224305
Q gi|254780675|r 224 LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS--V---QVER----K---------DGSVSSMQAEKLLLSA 285 (481)
Q Consensus 224 l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~--v---~~~~----~---------dG~~~~i~~D~vl~a~ 285 (481)
||....+ +.. .+++||+|++...+.++..++++.. + .+.. . .|++.+|++|.|++|+
T Consensus 489 MPA~~~E----v~~-A~EEGV~f~~~~~P~~i~~de~G~V~gv~~vr~~lgepd~~GRr~p~~i~Gse~~i~aD~VI~Ai 563 (639)
T PRK12809 489 MPGSRKE----VVN-AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAF 563 (639)
T ss_pred CCCCCEE----CCC-HHHCCEEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEECCEEEECC
T ss_conf 9997003----010-12187389827885799967986399999999995675888887347608936999899999988
Q ss_pred CCEEEEECCCCCCCCCCCCC-EEEEECCC----CEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 74220000232221123573-26642487----42302585883044455324441232025555430246
Q gi|254780675|r 286 GVQGNIENIGLEKIGVKTSN-GCIIVDGY----GRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 286 Gr~Pn~~~L~Le~~gi~~~~-g~i~vd~~----~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~ 351 (481)
|..|+... .++..||++++ |.|.+|+. +|||.|+|||+||+..++.++-.|+.+|+.||++|...
T Consensus 564 G~~~~~~~-~~~~~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~G~stVV~AI~~Gr~AA~sI~~y 633 (639)
T PRK12809 564 GFQAHAMP-WLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTL 633 (639)
T ss_pred CCCCCCCC-CCCCCCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78998875-33467855889998861787776766899999982787867369999999999999999999
No 53
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.98 E-value=1.9e-32 Score=254.53 Aligned_cols=276 Identities=19% Similarity=0.283 Sum_probs=187.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|.|||+|||||+||..|+++|.+|+|+|+ +.+||. + .||| |+|.++ +
T Consensus 329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGl-L------------------------~yGI-----P~fRLpk~ 378 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGL-L------------------------TFGI-----PAFKLDKS 378 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 8999897789999999999769757995257778866-7------------------------5248-----62227789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++.. ..++..||++..+... + ..+++. .. .-.+|.|+||||+. |
T Consensus 379 vv~~ei-----------~~l~~lGV~f~~n~~V--G-kDitl~----------------eL---~~~yDAVfla~Ga~~~ 425 (654)
T PRK12769 379 LLARRR-----------EIFSAMGIHFELNCEV--G-KDISLE----------------SL---LEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHH-----------HHHHHCCCEEECCCEE--C-CCCCHH----------------HH---HHCCCEEEEECCCCCC
T ss_conf 999999-----------9998269889837176--8-765899----------------99---7369989995178878
Q ss_pred CCCCCCCCCCCCCCCCCCCE--------ECC---------CCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCC-C
Q ss_conf 11011134555422124521--------113---------334443215654332100023210133-3100000000-1
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDAL--------KPS---------KTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDR-I 223 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l--------~l~---------~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~-l 223 (481)
+.++....+...++..-++| .+. ...|+++|||||.+||..|....|+|. +||+++|+++ -
T Consensus 426 r~l~IpGedl~GV~~AleFL~~~~~~~~g~~~~~~~~~i~~~GK~VvVIGGGntAmDcaRtA~RlGA~~Vt~vYRR~~~e 505 (654)
T PRK12769 426 MKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN 505 (654)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 66998997788838788889998886517755566676555575589988872469999999975998366045467234
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC--EE---EEE-------------CCCCEEEEECCCEEECC
Q ss_conf 2222222122210012201233221001344202234310--12---440-------------36740211023224305
Q gi|254780675|r 224 LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS--VQ---VER-------------KDGSVSSMQAEKLLLSA 285 (481)
Q Consensus 224 l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~--v~---~~~-------------~dG~~~~i~~D~vl~a~ 285 (481)
||....++ . ..+++||+|++...+.++..++++.. ++ ++. .+|+..++++|.|++|+
T Consensus 506 MPA~~~Ev----~-~A~EEGV~f~~~~~P~ei~~de~G~V~gv~~~r~~lgepD~sGRr~p~~v~gse~~i~aD~VI~Ai 580 (654)
T PRK12769 506 MPGSKKEV----K-NAREEGANFEFNVQPVALVLDEQGHVCGIRFLRTRLGEPDAQGRRRPVPIEGSEFVMPADAVIMAF 580 (654)
T ss_pred CCCCHHHH----H-HHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECC
T ss_conf 99875665----5-788568789944685799977997299999999885562777876205648966999899999998
Q ss_pred CCEEEEECCCCCCCCCCCCC-EEEEECCC----CEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 74220000232221123573-26642487----4230258588304445532444123202555543024
Q gi|254780675|r 286 GVQGNIENIGLEKIGVKTSN-GCIIVDGY----GRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 286 Gr~Pn~~~L~Le~~gi~~~~-g~i~vd~~----~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
|..|+... .++..|+++++ |.|.+|+. +|||+|+|||+||+..++.++-.|+.+|+.||..|..
T Consensus 581 G~~p~~~~-~~~~~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId~ 649 (654)
T PRK12769 581 GFNPHGMP-WLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred CCCCCCCC-CCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89998875-3225681376999887367777654489999898078566828999999999999999999
No 54
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.98 E-value=1.4e-31 Score=248.13 Aligned_cols=373 Identities=19% Similarity=0.314 Sum_probs=249.4
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC
Q ss_conf 489998985799999999987---9939999788886246325673708899999999999842117821348--75449
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL---GFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAG--KVEFN 80 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~---G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~--~~~~~ 80 (481)
-++|||-|.||..+...+.+. -..++++-..+. +|+ +. +..+. ..+-+
T Consensus 5 klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~----~nY---------------~R--------i~Ls~vl~~~~~ 57 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPR----PNY---------------NR--------ILLSSVLAGEKT 57 (793)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC----CCC---------------CC--------EEECCCCCCCCC
T ss_conf 489992464026799999830865504899526777----664---------------41--------000000289866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 9999999999999853446876301414210000-011222210023687520013555543225863899724552575
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGK-ATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
.+++.- ....+.++.+|+++.|+ +.++|...-.|... ...++.+|++|||||
T Consensus 58 ~edi~l-----------~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~----------------~g~~~~YDkLilATG 110 (793)
T COG1251 58 AEDISL-----------NRNDWYEENGITLYTGEKVIQIDRANKVVTTD----------------AGRTVSYDKLIIATG 110 (793)
T ss_pred HHHHHC-----------CCHHHHHHCCCEEECCCEEEEECCCCCEEECC----------------CCCEEECCEEEECCC
T ss_conf 888760-----------32205877591897188047851676568846----------------885840432787057
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEC------CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-CCCCCCCC
Q ss_conf 4311101113455542212452111------3334443215654332100023210133310000000012-22222212
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKP------SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-PVEDSEIS 232 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l------~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-~~~d~~~~ 232 (481)
|.|+.+|....+...+++++++-++ .+-.++-+|||||..|+|.|..|..+|.+|++++..+.+| ++.|+...
T Consensus 111 S~pfi~PiPG~d~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag 190 (793)
T COG1251 111 SYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAG 190 (793)
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 65565678998778712783199999999998606885897551141678878874797348987336688976526889
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECC
Q ss_conf 22100122012332210013442022343101244036740211023224305742200002322211235732664248
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDG 312 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~ 312 (481)
+.+++.+++.|++++++...+++.+.+. ...+.++||+ .+++|.|++|+|.+||++ | ..++|+.+++ +|+||+
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~~~--~~~vr~~DG~--~i~ad~VV~a~GIrPn~e-l-a~~aGlavnr-GIvvnd 263 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGT--EIPADLVVMAVGIRPNDE-L-AKEAGLAVNR-GIVVND 263 (793)
T ss_pred HHHHHHHHHHCCEEECCCHHHHHHCCCC--EEEEEECCCC--CCCCEEEEEECCCCCCCH-H-HHHCCCCCCC-CEEECC
T ss_conf 9999998860604531320245645764--0367605687--344206999623046617-6-7861766589-805636
Q ss_pred CCEEECCCCEEECCCCCC----CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCC
Q ss_conf 742302585883044455----3244412320255554302466443212232002454303340001496876107972
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGA----PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLD 388 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~----~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~ 388 (481)
+||||+|+|||+|+|+.. +.|+.-++.|++++|+|+.+..... +.. +++ +| .++-.|+|
T Consensus 264 ~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeqa~v~a~hl~~~~~~~-y~g-sv~---st------------kLKv~Gvd 326 (793)
T COG1251 264 YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEA-YEG-SVT---ST------------KLKVSGVD 326 (793)
T ss_pred CCCCCCCCEEEHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCC-CCC-CCC---HH------------HHCCCCCC
T ss_conf 55556777665176897618440012689999999998750674445-545-542---45------------43155663
Q ss_pred EEE-EEEECCCCHHHHCC-CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCC-CCC
Q ss_conf 799-99964638233207-898218999998899859999998299889999999999877977899638-854
Q gi|254780675|r 389 IRV-GKHSFSANGKAITL-GEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHT-VFP 459 (481)
Q Consensus 389 ~~~-~~~~~~~~~~~~~~-~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~-~~~ 459 (481)
+-+ +...-.+..+.++. +...+.+|-++-++ ++|+|+.++|+-+.- +-+--+|..+...+++.+. +++
T Consensus 327 l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~d-d~IvgavL~GDt~d~--~~l~~li~~~~~~se~r~~li~~ 397 (793)
T COG1251 327 VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKD-DKIVGAVLYGDTSDG--GWLLDLILKGADISEIRDTLILP 397 (793)
T ss_pred EEECCCHHHCCCCCEEEEECCCCCCEEEEEEEC-CEEEEEEEEEECCCC--HHHHHHHHCCCCCCCCCHHHCCC
T ss_conf 330111322489944898654113004899868-909999997423652--47999986278864355223103
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=4.4e-32 Score=251.81 Aligned_cols=278 Identities=24% Similarity=0.316 Sum_probs=187.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-
Q ss_conf 3489998985799999999987993999978-88862463256737088999999999998421178213487544999-
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE- 82 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~- 82 (481)
.-|+|||+|||||+||..|+++|.+|+|+|+ +..||- . .||| |++.++
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~--L-----------------------~yGI-----P~fRLPk 489 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGV--L-----------------------KYGI-----PEFRLPN 489 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--E-----------------------EECC-----CCCCCCH
T ss_conf 98999897789999999999779906998058888975--7-----------------------6548-----6110878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-
Q ss_conf 9999999999985344687630141421000001122221002368752001355554322586389972455257543-
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR- 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~- 161 (481)
+++++. ++ .+++.||++..+... + ..+++.. . ..-.+|.++||||+.
T Consensus 490 ~iv~~e----------I~-~l~~lGV~~~~n~~v--G-kdit~~e----------------L--~~egyDAVfla~Ga~~ 537 (760)
T PRK12778 490 KIVDVE----------IE-NLVKMGVTFEKDCIV--G-KTISVEE----------------L--EEEGFKGIFVASGAGL 537 (760)
T ss_pred HHHHHH----------HH-HHHHCCCEEECCCEE--C-CCCCHHH----------------H--HHCCCCEEEEECCCCC
T ss_conf 999999----------99-998649799899577--8-8689999----------------9--7588999999406787
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEC--------------CCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCC-CCC
Q ss_conf 11101113455542212452111--------------33344432156543321000232101333-100000000-122
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALKP--------------SKTPKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDR-ILP 225 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~l--------------~~~p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~-ll~ 225 (481)
|+.++-...+...+++.-++|.. ....++++|||||.+|+..|....|+|++ |++++|+++ -+|
T Consensus 538 pr~l~IpGe~l~gV~~a~eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emP 617 (760)
T PRK12778 538 PNFMNIPGENSINIMSSNEYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMP 617 (760)
T ss_pred CCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCC
T ss_conf 75289998667785877999999764430266678742269889999997609999999998399869997037721199
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC-----EEEEE-------------CCCCEEEEECCCEEECCCC
Q ss_conf 22222122210012201233221001344202234310-----12440-------------3674021102322430574
Q gi|254780675|r 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS-----VQVER-------------KDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 226 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~-----v~~~~-------------~dG~~~~i~~D~vl~a~Gr 287 (481)
... +.+ +..+++||+|++.+.+.++..++++.. ..++. .+|+..++++|.|++|+|.
T Consensus 618 A~~----~Ei-~~A~eEGV~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq 692 (760)
T PRK12778 618 ARL----EEV-KHAKEEGIEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGV 692 (760)
T ss_pred CCH----HHH-HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCC
T ss_conf 998----999-999857988991689789997799669999999999755377788873565994699999999999868
Q ss_pred EEEEECCCCCCCCCCCCC-EEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 220000232221123573-266424874230258588304445532444123202555543024
Q gi|254780675|r 288 QGNIENIGLEKIGVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 288 ~Pn~~~L~Le~~gi~~~~-g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
.||...+ ....|+++++ |.|.+|+.+|||.|+|||+|||..++.++-.|+.+|+.||..|..
T Consensus 693 ~~~~~~~-~~~~gl~~~~~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id~ 755 (760)
T PRK12778 693 SPNPIVP-SSIPGLELGRKGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMNE 755 (760)
T ss_pred CCCCCCC-CCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9886521-13667257799978839896348989998678676805999999999999999999
No 56
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.97 E-value=9.8e-32 Score=249.32 Aligned_cols=274 Identities=24% Similarity=0.418 Sum_probs=186.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 4899989857999999999879939999788-8862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||||||||+||.+|+++|.+|+|+|+. .+||- +. ||| |.+.++ +
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~------------------------~GI-----P~yRLP~~ 188 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MR------------------------YGI-----PGYRLPRD 188 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EE------------------------CCC-----CCCCCCHH
T ss_conf 8999897789999999999769858996767888988-83------------------------568-----75447589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++. ++. +.+.||++..+... + ..+++.. . .=.+|.|+||+|++ +
T Consensus 189 vl~~e----------i~~-i~~~GV~~~~n~~v--g-~dit~~~----------------L---~~~yDAV~la~Ga~~~ 235 (560)
T PRK12771 189 VLDAE----------IQR-ILDLGVEVKLGVRV--G-EDITLEQ----------------L---EGDYDAVFVAIGAQLG 235 (560)
T ss_pred HHHHH----------HHH-HHHCCCEEEECCEE--C-CCCCHHH----------------H---HCCCCEEEECCCCCCC
T ss_conf 99999----------999-99649679838784--4-6567999----------------7---1778889991687877
Q ss_pred CCCCCCCCCCCCCCCCCCCEE------CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCC-CCCCCCCCCCCC
Q ss_conf 110111345554221245211------13334443215654332100023210133-3100000000-122222221222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK------PSKTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDR-ILPVEDSEISQF 234 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~------l~~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~-ll~~~d~~~~~~ 234 (481)
+.++....+...+++.-++|. ...+.++++|||||.+||..|....|+|. +||+++|+++ =+|..+. .
T Consensus 236 r~l~i~G~d~~gV~~al~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~----E 311 (560)
T PRK12771 236 KRLPIPGEDAANVLDAVSFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAF----E 311 (560)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH----H
T ss_conf 608978877655240599999975689755688689989982289999999973897699983144202899989----9
Q ss_pred CCHHHHHCCCCCCCCHHHHHHCCCCCCC-CEEEE---E-------CCCCEEEEECCCEEECCCCEEEEECCCCCC-CCCC
Q ss_conf 1001220123322100134420223431-01244---0-------367402110232243057422000023222-1123
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSVKQKGDMV-SVQVE---R-------KDGSVSSMQAEKLLLSAGVQGNIENIGLEK-IGVK 302 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v~~~~~~~-~v~~~---~-------~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~-~gi~ 302 (481)
+... .++||+|++...+.++..+++.+ .+++. . ..|+..+|++|.|++|+|+.|+...| ++ -+++
T Consensus 312 i~~A-~eEGV~~~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~ 388 (560)
T PRK12771 312 IDDA-LREGVEINWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVR 388 (560)
T ss_pred HHHH-HHCCCEEEECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEE
T ss_conf 9878-747956896346479980698598999999998899887889972675468999922578873000--2365547
Q ss_pred CCCEEEEEC-CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 573266424-87423025858830444553244412320255554302
Q gi|254780675|r 303 TSNGCIIVD-GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 303 ~~~g~i~vd-~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
.++|++.+| ++++||.|+|||+||+..++.++-.|..+|+.||.+|.
T Consensus 389 ~~~g~i~~~~~~~~Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id 436 (560)
T PRK12771 389 NGRGGLVVDRNFRMTGRPGVFAGGDMVPGERTVTTAVGHGKKAARHID 436 (560)
T ss_pred ECCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 179988847876657998867436546684189999999999999999
No 57
>PTZ00318 NADH dehydrogenase; Provisional
Probab=99.97 E-value=2.4e-31 Score=246.46 Aligned_cols=316 Identities=21% Similarity=0.305 Sum_probs=196.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 48999898579999999998799399997888862463256737088999999999998421178213487544999999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIV 85 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (481)
-|||||||.||+++|..+.....+|+||++..+ ++...-+++. ..+. ++...+.
T Consensus 12 rVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny--------------~lF~PLL~qv----------AtGt--Le~r~I~ 65 (514)
T PTZ00318 12 NVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH--------------MVFTPLLPQT----------TTGT--LEFRSVC 65 (514)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC--------------CCCCHHHHHH----------HHCC--CCHHHEE
T ss_conf 589999769999999973868982899999998--------------5010216766----------2057--7757722
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99999999853446876301414210000011222--2100236875200135555432258638997245525754311
Q gi|254780675|r 86 KRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP--SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~ 163 (481)
.-.+.+. ..+.+....+++++..-+|. ++|+....... ...........++.||++|||+||.++
T Consensus 66 ~Pir~i~--------~~~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~-----~~~~~~~~~~~~l~YD~LVlA~Gs~tn 132 (514)
T PTZ00318 66 EPITRIQ--------PALAKLPNRFLRCVVYDVNFDEKQVKCVGVGVV-----GGSFNAPVNTFSVKYDKLILAHGARPN 132 (514)
T ss_pred CCHHHHH--------HHHCCCCCEEEEEEEEEEEHHHCEEEEEEECCC-----CCCCCCCCCCCEECCCEEEECCCCCCC
T ss_conf 2178876--------765136745999999887121078999740124-----665444456636428878986786556
Q ss_pred --CCCCCCCCCCCCCCCCCCEEC----------CCCC-------C---CCCCCCCCCCCCCCHHHHHCC-----------
Q ss_conf --101113455542212452111----------3334-------4---432156543321000232101-----------
Q gi|254780675|r 164 --HIEGIEPDSHLIWTYFDALKP----------SKTP-------K---SLIVMGSGAIGVEFSSFYKSL----------- 210 (481)
Q Consensus 164 --~~~g~~~~~~~~~t~~~~l~l----------~~~p-------~---~ivIiGgG~ig~E~A~~l~~l----------- 210 (481)
.+||+......+.+-.|+..+ ..+| + +++|||||++|+|+|..|+.+
T Consensus 133 ~FGipGv~E~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~ 212 (514)
T PTZ00318 133 TFNVPGVEERAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTS 212 (514)
T ss_pred CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 78999879846657889999999999999999850788997893242027897777620328999999999887642812
Q ss_pred ---CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf ---33310000000012222222122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 211 ---DVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 211 ---G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
-.+|+|++.+ ++||.+|+.++++.++.|++.||++++++ +.++..+ . +. ..+| +.|+++.++|++|.
T Consensus 213 l~~~~~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~~~--~--v~--~~~G--e~i~~~tvVWtAGV 282 (514)
T PTZ00318 213 LVPFCKVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVTDK--E--VF--TKSG--EVLPTGLVVWSTGV 282 (514)
T ss_pred HCCCCEEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEECC--E--EE--ECCC--CEEECCEEEEECCC
T ss_conf 3010037886050-01210898999999999987894998362-8998689--5--89--6798--19986689991588
Q ss_pred EEEEECCCCCCCCCCC-CCEEEEECCCCEE-----ECCCCEEECCCCC-----CCCCCCCCCCCHHHHHHHHCCC----C
Q ss_conf 2200002322211235-7326642487423-----0258588304445-----5324441232025555430246----6
Q gi|254780675|r 288 QGNIENIGLEKIGVKT-SNGCIIVDGYGRT-----NVPGIYAIGDVAG-----APMLAHKAEHEGIICIEKIAGK----S 352 (481)
Q Consensus 288 ~Pn~~~L~Le~~gi~~-~~g~i~vd~~~qT-----s~p~IyA~GDv~g-----~~~l~~~A~~qg~~aa~~i~~~----~ 352 (481)
.|+. | ++.++++. .+|.|.||++||. +.|+|||+|||+. .|+++.+|.+||+++|+||... +
T Consensus 283 ~a~p--l-~~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~ 359 (514)
T PTZ00318 283 GPSP--L-TKALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKP 359 (514)
T ss_pred CCCC--H-HHHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7670--3-665688645798378899867678889999768842334678998999307899999999999999863999
Q ss_pred CCCCCCCCCCEEEEEEEHHHEEECCCHH
Q ss_conf 4432122320024543033400014968
Q gi|254780675|r 353 KVYPLDKSKIPGCTYCNPQVASIGLTEE 380 (481)
Q Consensus 353 ~~~~~d~~~ip~~vft~P~ia~vG~te~ 380 (481)
...|+.|...- .+|++|....
T Consensus 360 ~~~pF~Y~~~G-------smA~IG~~~A 380 (514)
T PTZ00318 360 MMAPFVYRSLG-------SMVSLGDNSA 380 (514)
T ss_pred CCCCCEECCCC-------EEEEECCCCE
T ss_conf 89996134666-------4788468416
No 58
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.97 E-value=1.3e-30 Score=241.13 Aligned_cols=276 Identities=20% Similarity=0.295 Sum_probs=191.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-HH
Q ss_conf 89998985799999999987993999978-88862463256737088999999999998421178213487544999-99
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-DI 84 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 84 (481)
|+|||||||||.||-.|++.|.+|+++|| ..+|| .-.||| |.|.++ .+
T Consensus 146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG-------------------------LLtFGI-----PsFKLdK~V 195 (480)
T TIGR01318 146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG-------------------------LLTFGI-----PSFKLDKAV 195 (480)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-------------------------CCCCCC-----CCHHHHHHH
T ss_conf 89977886025799987517855999747703076-------------------------013688-----851102789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC---
Q ss_conf 99999999985344687630141421000001122221002368752001355554322586389972455257543---
Q gi|254780675|r 85 VKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR--- 161 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~--- 161 (481)
+.+++++ |+.+||++--+. +|-. |-... .=.=.||.|.|-.|+=
T Consensus 196 ~~~Rr~i-----------f~~MGi~F~Ln~---------EvGr-D~~l~------------~LLe~YDAVFlGvGTY~~~ 242 (480)
T TIGR01318 196 LSRRREI-----------FTAMGIEFKLNT---------EVGR-DISLD------------DLLEDYDAVFLGVGTYRSM 242 (480)
T ss_pred HHHHHHH-----------HHHCCCEEECCC---------EEEC-CCCHH------------HHHHHCCEEEEECCCCCCC
T ss_conf 9999999-----------975892786581---------6503-25554------------4431148489611433431
Q ss_pred ----CC-CCCCCC-CCCCCCCCCCCCEECC-----------CC------CCCCCCCCCCCCCCCCHHHHHCCC-CCCCCE
Q ss_conf ----11-101113-4555422124521113-----------33------444321565433210002321013-331000
Q gi|254780675|r 162 ----PR-HIEGIE-PDSHLIWTYFDALKPS-----------KT------PKSLIVMGSGAIGVEFSSFYKSLD-VDVSLI 217 (481)
Q Consensus 162 ----p~-~~~g~~-~~~~~~~t~~~~l~l~-----------~~------p~~ivIiGgG~ig~E~A~~l~~lG-~~Vtli 217 (481)
|. ..||+- ...+++-+.+.++.++ +. .|+|||+|||.++|.+--.--|+| ++||=+
T Consensus 243 ~ggLP~eDa~GV~~ALPFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~ 322 (480)
T TIGR01318 243 RGGLPGEDAPGVLKALPFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCA 322 (480)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 28778877421666424776615212378887774467776677423477668985888752578899998177613126
Q ss_pred ECCCCC-CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEE-----C-------------CCCEEEEEC
Q ss_conf 000001-222222212221001220123322100134420223431012440-----3-------------674021102
Q gi|254780675|r 218 EVKDRI-LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVER-----K-------------DGSVSSMQA 278 (481)
Q Consensus 218 ~~~~~l-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~-----~-------------dG~~~~i~~ 278 (481)
+|+|.. ||+. ++++.++ +++||+|.+|.++.+|+-+.++...-+.. + .|++..+++
T Consensus 323 YRRDE~nMPGS----rrEV~NA-REEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~A 397 (480)
T TIGR01318 323 YRRDEANMPGS----RREVANA-REEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPA 397 (480)
T ss_pred EECCCCCCCCC----HHHHCCC-HHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 65367787877----5552661-111711321003158887788852335652356678677768777104786515146
Q ss_pred CCEEECCCCEEEEECCCCCCCCCCCC-CEEEEEC-------CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 32243057422000023222112357-3266424-------874230258588304445532444123202555543024
Q gi|254780675|r 279 EKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVD-------GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 279 D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd-------~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
|.||+|.|+.|.... +|++-||++| +|.|.++ -.+||++|.|||-||+..+.-|+-+|+.+||-||+.|+.
T Consensus 398 DvvI~AFGF~P~~~p-WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~~ 476 (480)
T TIGR01318 398 DVVIMAFGFSPHAMP-WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGILD 476 (480)
T ss_pred CEEEEEECCCCCCCC-HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 558971067898864-4451775563463277513455677653356884751677014672200066766899999999
Q ss_pred C
Q ss_conf 6
Q gi|254780675|r 351 K 351 (481)
Q Consensus 351 ~ 351 (481)
.
T Consensus 477 w 477 (480)
T TIGR01318 477 W 477 (480)
T ss_pred H
T ss_conf 8
No 59
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.2e-30 Score=241.41 Aligned_cols=275 Identities=21% Similarity=0.364 Sum_probs=180.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
-|+|||+|||||+||..|+++|.+|+|+|+ +.+||. + .||| |+|.++ +
T Consensus 285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGl-L------------------------~yGI-----P~fRLpk~ 334 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGV-M------------------------RYGI-----PSYRLPDE 334 (604)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 8999898689999999999869868997456778972-3------------------------3158-----72228789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++..+ .+++.||++..+... + ..+++.. . .-.+|.|+||||+. |
T Consensus 335 vv~rei~-----------~i~~~GV~f~~n~~V--G-kDit~ee----------------L---~~~yDAVfLa~Ga~~~ 381 (604)
T PRK13984 335 ALDKDIA-----------FIEALGVKIHTNTRV--G-KDISLEE----------------L---REKHDAVFVSTGFTLG 381 (604)
T ss_pred HHHHHHH-----------HHHHCCCEEECCCEE--C-CCCCHHH----------------H---HHCCCEEEEECCCCCC
T ss_conf 9999999-----------999729899768577--9-8478999----------------9---7058999995388877
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-----------CCCCCCCCCCCCCCCCCCCCHHHHHCC-----C-CCCCCE-ECCC-CC
Q ss_conf 110111345554221245211-----------133344432156543321000232101-----3-331000-0000-01
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK-----------PSKTPKSLIVMGSGAIGVEFSSFYKSL-----D-VDVSLI-EVKD-RI 223 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~-----------l~~~p~~ivIiGgG~ig~E~A~~l~~l-----G-~~Vtli-~~~~-~l 223 (481)
+.++....+...++..-++|. ...++++++|||||.+||..|....|+ | .+|+++ .++. .-
T Consensus 382 r~L~IpGedl~GV~~AldfL~~~~~~~~g~~~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~e 461 (604)
T PRK13984 382 RSTRIPGSDHPNVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEE 461 (604)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHH
T ss_conf 66898998888817679999999865425787666697589989818899999999873013247743055178787342
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCC-CEEEE------E---------CCCCEEEEECCCEEECCCC
Q ss_conf 222222212221001220123322100134420223431-01244------0---------3674021102322430574
Q gi|254780675|r 224 LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMV-SVQVE------R---------KDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 224 l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~-~v~~~------~---------~dG~~~~i~~D~vl~a~Gr 287 (481)
+|.... .+ +..+++||+|++...+.++..+++.+ .+.+. + .+|+...+++|.|++|+|.
T Consensus 462 MPA~~~----Ev-~~A~EEGV~f~~~~~P~ei~~e~GkV~gv~~~~~l~~~D~~GR~~p~~~~gse~~i~aD~VI~AiGq 536 (604)
T PRK13984 462 MPADME----EI-EEGLEEGVKIYPGWGPMEVVIENDKVKGVKFKKCLEVFDEEGRFNPKFDESEKIVVDADMVVEAIGQ 536 (604)
T ss_pred CCCCHH----HH-HHHHHCCCEEEECCCCEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCC
T ss_conf 899889----88-9998688789947776899941996999999999877989998801556995699989999999858
Q ss_pred EEEEECCCCCC--CCCCCCCEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 22000023222--1123573266424874230258588304445532444123202555543024
Q gi|254780675|r 288 QGNIENIGLEK--IGVKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 288 ~Pn~~~L~Le~--~gi~~~~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
.|+...|. ++ .++++++|.|.+|+++|||+|+|||+||+..++- +-.|+.+|+.||..|-.
T Consensus 537 ~p~~~~l~-~~~~~~l~~~rG~I~~d~~~~Ts~pgVFAgGD~v~G~s-VV~AIa~GR~AA~~Id~ 599 (604)
T PRK13984 537 APDYSYLP-EEIKSKLEFVRGRIKTNEYRQTSVPWLFAGGDIVHGPD-IIHGVADGYWAAKGIDQ 599 (604)
T ss_pred CCCCCHHH-HHHCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCH-HHHHHHHHHHHHHHHHH
T ss_conf 88710002-35311232568859858998778999887778687628-99999999999999999
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.6e-29 Score=233.22 Aligned_cols=278 Identities=21% Similarity=0.297 Sum_probs=187.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-
Q ss_conf 489998985799999999987993999978-888624632567370889999999999984211782134875449999-
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED- 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~- 83 (481)
-|+|||+||||++||..|++.|.+|+++|+ +.+||.. .||| |+|.+++
T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL-------------------------~YGI-----PeFRLPK~ 357 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVL-------------------------RYGI-----PEFRLPNQ 357 (944)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEE-------------------------EECC-----CCCCCCHH
T ss_conf 67998857689999999997799339994478788558-------------------------9558-----76668789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++.. ..+++.||++..... + .+++++... ..--++.++||||+. |
T Consensus 358 IV~~EI-----------~~l~~lGV~f~~n~~--V-Gk~~tl~eL------------------~~eGydAVfIg~GAg~p 405 (944)
T PRK12779 358 LIDDVV-----------EKIKLLGGRFVKNFV--V-GKTATLEDL------------------KAEGFWKIFVGTGAGLP 405 (944)
T ss_pred HHHHHH-----------HHHHHCCEEEEECCE--E-CCCCCHHHH------------------HHCCCCEEEEEECCCCC
T ss_conf 999999-----------999967839997856--4-776889999------------------76899989997478887
Q ss_pred CCCCCCCCCCCCCCCCCCCEE---C-------------CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCC-CCC
Q ss_conf 110111345554221245211---1-------------33344432156543321000232101333100000000-122
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK---P-------------SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDR-ILP 225 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~---l-------------~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~-ll~ 225 (481)
+.+.-...+...+++..++|. + ....++++|||||.+||..|....|+|.+||+++|+++ =||
T Consensus 406 ~~l~IpGE~L~GV~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMP 485 (944)
T PRK12779 406 TFMNVPGEHLLGVMSANEFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP 485 (944)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCC
T ss_conf 56898887776825689999986431235664568642678987999899566999999988529878999845876589
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC---EE---EEEC--C----------CCEEEEECCCEEECCCC
Q ss_conf 22222122210012201233221001344202234310---12---4403--6----------74021102322430574
Q gi|254780675|r 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS---VQ---VERK--D----------GSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 226 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~---v~---~~~~--d----------G~~~~i~~D~vl~a~Gr 287 (481)
... +.+.. -+++||+|.+=+.+.++..++++.. +. ++++ | |+...+++|.|++|+|.
T Consensus 486 Ar~----EEi~h-A~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~ 560 (944)
T PRK12779 486 ARV----EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred CCH----HHHHH-HHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCC
T ss_conf 889----99988-9857928998149665524468977889999985358988778978877797169777999990578
Q ss_pred EEEEECCCCCC-CCCCCCC-EEEEECC-CCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 22000023222-1123573-2664248-7423025858830444553244412320255554302466
Q gi|254780675|r 288 QGNIENIGLEK-IGVKTSN-GCIIVDG-YGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 288 ~Pn~~~L~Le~-~gi~~~~-g~i~vd~-~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~ 352 (481)
.||.- + ++. -|+++++ |.|.||+ +++||.|+|||.||++.+...+-.|+..|+.||..|.|.-
T Consensus 561 ~pNpl-i-~~t~p~L~~~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~~ 626 (944)
T PRK12779 561 TANPI-M-KDAEPGLKTNKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCCCC-C-CCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99951-0-136877301678519988555766777776335502456789887554599999985469
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=235.93 Aligned_cols=279 Identities=20% Similarity=0.301 Sum_probs=187.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-
Q ss_conf 489998985799999999987993999978-888624632567370889999999999984211782134875449999-
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED- 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~- 83 (481)
-|.|||+|||||+||..|+++|.+|+|+|+ ...||- ..||| |+|.+++
T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGv-------------------------L~YGI-----PeFRLPK~ 483 (993)
T PRK12775 434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGV-------------------------LQYGI-----PSFRLPRD 483 (993)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------------------------EEECC-----CCCCCCHH
T ss_conf 0899783788999999999779964897168889972-------------------------68437-----77678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
++++..+ .+++.||++..+.- ++ +++++.. ... .-.+|.+.|+||+. |
T Consensus 484 IV~~EI~-----------~l~~lGVef~~n~~--VG-kditl~e---------------L~~--e~gyDAVFIg~GA~~~ 532 (993)
T PRK12775 484 IIDREIQ-----------RLKDIGVKFETNKV--VG-KTFTIPQ---------------LMN--DRGFDAVFVAAGAGAP 532 (993)
T ss_pred HHHHHHH-----------HHHHCCEEEECCCE--EC-CCCCHHH---------------HHH--CCCCCEEEEECCCCCC
T ss_conf 9999999-----------99878949983888--65-6078999---------------953--4598989995587867
Q ss_pred CCCCCCCCCCCCCCCCCCCEE------CC---------CCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCCC-CC
Q ss_conf 110111345554221245211------13---------334443215654332100023210133-31000000001-22
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK------PS---------KTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDRI-LP 225 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~------l~---------~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~l-l~ 225 (481)
+.+.....+...+++..++|. .. ...++++|||||.++|..|....|+|. +|++++|+++- ||
T Consensus 533 ~~lgIpGE~l~GV~sA~eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~VtivYRRte~EMP 612 (993)
T PRK12775 533 TFLGIPGEFAGRVYSANEFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAATVRCVYRRSEAEAP 612 (993)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCC
T ss_conf 31898988887817779999997633577677567864579969998994369998899997699867999968856389
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC-----EEEEEC--C----------CCEEEEECCCEEECCCCE
Q ss_conf 22222122210012201233221001344202234310-----124403--6----------740211023224305742
Q gi|254780675|r 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS-----VQVERK--D----------GSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 226 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~-----v~~~~~--d----------G~~~~i~~D~vl~a~Gr~ 288 (481)
.... .+ +..+++||+|++.+.+.++..++++.. +.++++ | |+..++++|.|++|+|..
T Consensus 613 A~~e----EV-~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~ 687 (993)
T PRK12775 613 ARIE----EI-RHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTK 687 (993)
T ss_pred CCHH----HH-HHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCC
T ss_conf 8899----99-879865939996269716786588639899999816679898889478678854888879999957799
Q ss_pred EEEECCCCCCCCCCCCC-EEEEECCC-CEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 20000232221123573-26642487-42302585883044455324441232025555430246
Q gi|254780675|r 289 GNIENIGLEKIGVKTSN-GCIIVDGY-GRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 289 Pn~~~L~Le~~gi~~~~-g~i~vd~~-~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~ 351 (481)
||.--+ -..-|+++++ |.|.||+. ++||.|+|||.||++.++.++-.|+.+|+.||++|...
T Consensus 688 pnpl~~-~~~pgL~~~kwGtI~vDe~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAArsId~y 751 (993)
T PRK12775 688 PNPIIG-QATPGLALNKWGNIAADDDTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAAKSIAAW 751 (993)
T ss_pred CCCCCC-CCCCCCEECCCCCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 983100-3688822258770898988776688887636561255769999987089999999999
No 62
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=224.12 Aligned_cols=297 Identities=29% Similarity=0.347 Sum_probs=215.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCEEC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCC
Q ss_conf 89972455257543111011134555422124---52111---3334443215654332100023210133310000000
Q gi|254780675|r 148 TYKAKHIIIATGARPRHIEGIEPDSHLIWTYF---DALKP---SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKD 221 (481)
Q Consensus 148 ~~~a~~ivIATGs~p~~~~g~~~~~~~~~t~~---~~l~l---~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~ 221 (481)
.+.+|+++||||++|+.++ ......+.+.. ++..+ ...+++++|+|+|++|+|+|..+++.|.+|++++..+
T Consensus 92 ~~~yd~LvlatGa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 92 EIEYDYLVLATGARPRPPP--ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred CCCCCCEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 0726525881476556677--54222443246899998765356677739998934999999999987799389997566
Q ss_pred CCCCCCC-CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEE-EEECCCCEEEEECCCEEECCCCEEEEECCCCCCC
Q ss_conf 0122222-2212221001220123322100134420223431012-4403674021102322430574220000232221
Q gi|254780675|r 222 RILPVED-SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQ-VERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 (481)
Q Consensus 222 ~ll~~~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~-~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~ 299 (481)
++++..- +++++.+.+.|+..||+++++..+.+++..++..... .... ....+++|.+++++|.+||+... ++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~g~~p~~~l~--~~~ 245 (415)
T COG0446 170 RLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI--DGEEIKADLVIIGPGERPNVVLA--NDA 245 (415)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCEEEEEEEEE--EEEEECCCEEEECCCCCCCCCCC--CCC
T ss_conf 42331121889999999999729489826526999925862155445665--30352233698789757761015--465
Q ss_pred --CCCCCCEEEEECCCCEEE-CCCCEEECCCCCCC----------CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEE-
Q ss_conf --123573266424874230-25858830444553----------2444123202555543024664432122320024-
Q gi|254780675|r 300 --GVKTSNGCIIVDGYGRTN-VPGIYAIGDVAGAP----------MLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGC- 365 (481)
Q Consensus 300 --gi~~~~g~i~vd~~~qTs-~p~IyA~GDv~g~~----------~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~- 365 (481)
+.....|+|.||++++|+ .++|||+|||+..+ .+.+.|..++++++.++.+. ...+. .++..
T Consensus 246 ~~~~~~~~g~i~v~~~~~~~~~~~vya~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~---~~~~~~ 321 (415)
T COG0446 246 LPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRIPG---LLGTVI 321 (415)
T ss_pred CCCCCCCCCCEEEECCCCEECCCCEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCC---CCCCEE
T ss_conf 44401378729998245421668889803320024432220123101244554300245540344-33332---345114
Q ss_pred -EEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHHHHCCC-CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf -54303340001496876107972799999646382332078-9821899999889985999999829988999999999
Q gi|254780675|r 366 -TYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLG-EDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIA 443 (481)
Q Consensus 366 -vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~~~~~~-~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~a 443 (481)
-..+...+..|+++. .+..++ .+.........+..... ...-..|+..+.++.+++|++. -. ....++.+..+
T Consensus 322 ~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 396 (415)
T COG0446 322 SDVGDLCAASTGLTEG--KERGID-VVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALA 396 (415)
T ss_pred EECCCEEEEEEEECCC--CEEEEE-EEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHH
T ss_conf 4047614677750355--223345-5566414565311126776433303541155210022101-36-88886445554
Q ss_pred HHCCCCHHHHHCCCCC
Q ss_conf 9877977899638854
Q gi|254780675|r 444 MSLETTEEELMHTVFP 459 (481)
Q Consensus 444 i~~~~t~~~l~~~~~~ 459 (481)
+..+.++.++......
T Consensus 397 ~~~~~~~~~~~~~~~~ 412 (415)
T COG0446 397 IGLGDTVAELDALDAI 412 (415)
T ss_pred HHHCCCCHHHHHCCCC
T ss_conf 1010120021201002
No 63
>KOG1336 consensus
Probab=99.95 E-value=6.2e-29 Score=228.94 Aligned_cols=368 Identities=23% Similarity=0.342 Sum_probs=233.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 48999898579999999998799--3999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGF--KVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~--~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
.++|||+||+|..|+..+.+.|. +.+|+-++.+ + | +|.+.
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~----~-----p-----------------------------ydr~~ 117 (478)
T KOG1336 76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL----L-----P-----------------------------YDRAR 117 (478)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC----C-----C-----------------------------CCCHH
T ss_conf 49997688203355766775288766078742334----7-----6-----------------------------54000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99999999998534468763014142100000112222100236875200135555432258638997245525754311
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR 163 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~ 163 (481)
+........+.+.......++..+|+++.+... +.++... ......+..++++++++|||||+|+
T Consensus 118 Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v------~~~D~~~---------K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336 118 LSKFLLTVGEGLAKRTPEFYKEKGIELILGTSV------VKADLAS---------KTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred CCCCEEECCCCCCCCCHHHHHHCCCEEEECCEE------EEEECCC---------CEEEECCCCEEECCEEEEEECCCCC
T ss_conf 133201014562105826676538237970305------8864146---------5799679835301069996157666
Q ss_pred CCCCCCCCCCCCCCCCCCEECC------CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCC
Q ss_conf 1011134555422124521113------3344432156543321000232101333100000000122-22222122210
Q gi|254780675|r 164 HIEGIEPDSHLIWTYFDALKPS------KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDSEISQFVQ 236 (481)
Q Consensus 164 ~~~g~~~~~~~~~t~~~~l~l~------~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-~~d~~~~~~~~ 236 (481)
.+|.+..+.+++...+++-+.+ ...++++++|+|++|+|+|..+..-+.+||+|++.+.+++ .+-+++++.++
T Consensus 183 ~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~ 262 (478)
T KOG1336 183 TLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYE 262 (478)
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 58988715611466515788899998715585699977528899999999745835799726764104344177899999
Q ss_pred HHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECCCCE
Q ss_conf 01220123322100134420223431012440367402110232243057422000023222112357-32664248742
Q gi|254780675|r 237 RSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYGR 315 (481)
Q Consensus 237 ~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~q 315 (481)
..|+++||++++++.+.+++.+.++..+.+...||+ ++++|.|++.+|.+|||..+ +. |+.++ +|+|.||+++|
T Consensus 263 ~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~--~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~ 337 (478)
T KOG1336 263 DYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK--TLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQ 337 (478)
T ss_pred HHHHHCCEEEEEECCEEECCCCCCCCEEEEEECCCC--EECCCEEEEEECCCCCCCCC--CC-CCEECCCCCEEEHHCEE
T ss_conf 999845939998042000124788737999812487--74267699801662466544--34-41002468775000012
Q ss_pred EECCCCEEECCCCCCCC--C------CCC--CCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCC
Q ss_conf 30258588304445532--4------441--2320255554302466443212232002454303340001496876107
Q gi|254780675|r 316 TNVPGIYAIGDVAGAPM--L------AHK--AEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQ 385 (481)
Q Consensus 316 Ts~p~IyA~GDv~g~~~--l------~~~--A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~ 385 (481)
|++|+|||+|||+.-|. + -|. |..+|+-|...+-...... |..+|.. | +-+..-+ .+..
T Consensus 338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~---~~~lPyf-~--t~~f~~~-----~~~~ 406 (478)
T KOG1336 338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA---YDYLPYF-Y--TRFFSLS-----WRFA 406 (478)
T ss_pred ECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHH-H--HHHHHHH-----CCCC
T ss_conf 03587001141440001333443544278899998876656443267664---1013147-7--7775210-----1035
Q ss_pred CCCE-EEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 9727-999996463823320789821899999889985999999829988999999999987797789963
Q gi|254780675|r 386 GLDI-RVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMH 455 (481)
Q Consensus 386 g~~~-~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~ 455 (481)
|..+ .+... -..++..|+.-.++ +..+++..-+ +-.|..+.++-.++++-.+..+..
T Consensus 407 G~g~~~~v~~---------G~~e~~~f~ay~~k---~~~v~a~~~~-g~~~~~~~~a~l~~~~~~v~~~~~ 464 (478)
T KOG1336 407 GDGVGDVVLF---------GDLEPGSFGAYWIK---GDKVGAVAEG-GRDEEVSQFAKLARQGPEVTSLKL 464 (478)
T ss_pred CCCCCCEEEE---------CCCCCCCCEEEEEE---CCEEEEEECC-CCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 7675652564---------46666521456751---4179999536-887678999999863986203444
No 64
>pfam02852 Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerization domain. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases.
Probab=99.95 E-value=2e-27 Score=218.05 Aligned_cols=110 Identities=42% Similarity=0.805 Sum_probs=107.7
Q ss_pred CEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 00245430334000149687610797279999964638233207898218999998899859999998299889999999
Q gi|254780675|r 362 IPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFS 441 (481)
Q Consensus 362 ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~ 441 (481)
||++|||+||+|+||+||+||+++|+++++.+.+|++++|++.++++.||+|+++|+++++|||+|++|++|+|+||.++
T Consensus 1 iP~~vft~PeiA~VGlte~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~~~ilGa~ivg~~A~elI~~~~ 80 (110)
T pfam02852 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAA 80 (110)
T ss_pred CCEEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHH
T ss_conf 99488276802688688999997289861788667751888866898610799984478966899999098878999999
Q ss_pred HHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 999877977899638854877899999999
Q gi|254780675|r 442 IAMSLETTEEELMHTVFPHPTISETMKESI 471 (481)
Q Consensus 442 ~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~ 471 (481)
+||++++|+++|.+++|+|||++|++++|+
T Consensus 81 ~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa 110 (110)
T pfam02852 81 LAIKMGATVEDLANTIHAHPTLSEALVEAA 110 (110)
T ss_pred HHHHCCCCHHHHHHCCCCCCCHHHHHHHHC
T ss_conf 999869989999527667987789999759
No 65
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.94 E-value=2e-26 Score=210.67 Aligned_cols=291 Identities=22% Similarity=0.316 Sum_probs=173.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 3489998985799999999987993999978-888624632567370889999999999984211782134875449999
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
.-|.|||+|||||+||-.|.+.|+.||++|| +++||- -.|||. +..+|=.+
T Consensus 152 kkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGL-------------------------L~YGIP---nmKLdK~e 203 (517)
T TIGR01317 152 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGL-------------------------LRYGIP---NMKLDKEE 203 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------------------------CCCCCC---CCCCCHHH
T ss_conf 66899756757999999985358838997436788863-------------------------024888---74337388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEECCCC-
Q ss_conf 9999999999853446876301414210000011-222210023687520013555543225863-8997245525754-
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATL-KNPSEITVSKPSQPAVQPQHPIPKKVLGEG-TYKAKHIIIATGA- 160 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f-~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ivIATGs- 160 (481)
+++|+ + .+|+..|||++.++-.= .|.+. .+++... .....+. .-.+|.||+||||
T Consensus 204 ~v~RR------i-----~~l~aEG~~FvtnteiGdWdens-kitnlsk----------~di~~~~L~~~fDAVVLa~Ga~ 261 (517)
T TIGR01317 204 IVDRR------I-----DLLEAEGVDFVTNTEIGDWDENS-KITNLSK----------KDISADELKEDFDAVVLATGAT 261 (517)
T ss_pred HHHHH------H-----HHHHHCCCCCCCCCCCCCCCCCC-CEECCCC----------CCCCHHHHHHHCCEEEEECCCC
T ss_conf 99999------9-----99874784201783004653444-2000223----------4268799871469389833788
Q ss_pred CCCCCCCCCCCCCCCC-------------CCCCCEECCCC------CCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECC
Q ss_conf 3111011134555422-------------12452111333------4443215654332100023210133-31000000
Q gi|254780675|r 161 RPRHIEGIEPDSHLIW-------------TYFDALKPSKT------PKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVK 220 (481)
Q Consensus 161 ~p~~~~g~~~~~~~~~-------------t~~~~l~l~~~------p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~ 220 (481)
.||.||-..=+.+.++ -.+++.....- .|+|+|||||.+|..+-..-.|.|+ -|+-+|-.
T Consensus 262 ~pRDLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~m 341 (517)
T TIGR01317 262 KPRDLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 341 (517)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 60103557766466037865546754856088536667887354228678997578756224563235543552302568
Q ss_pred CCCC---------CCCCCCCC-CCCCHHHHH-CC--CCCCCCHHHHHHCCCC------------------CCCCEEEEEC
Q ss_conf 0012---------22222212-221001220-12--3322100134420223------------------4310124403
Q gi|254780675|r 221 DRIL---------PVEDSEIS-QFVQRSLQK-RG--IKILTESKISSVKQKG------------------DMVSVQVERK 269 (481)
Q Consensus 221 ~~ll---------~~~d~~~~-~~~~~~l~~-~G--v~i~~~~~v~~v~~~~------------------~~~~v~~~~~ 269 (481)
|++= |.++.-+. ++..+..++ .| .+-+ ...-+++..++ ++.. .+.--
T Consensus 342 P~PP~~Ra~~npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~-~~~e~ 419 (517)
T TIGR01317 342 PKPPEERAKDNPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKY-EFVEV 419 (517)
T ss_pred CCCCHHHCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCE-EEEEE
T ss_conf 8877677278648657511330266898985179560123-100133567688448788889999987789828-88860
Q ss_pred CCCEEEEECCCEEECCCCEEEEECC-CCCCCCCCC-CCEEEE-ECCCCE---EECCC--CEEECCCCCCCCCCCCCCCCH
Q ss_conf 6740211023224305742200002-322211235-732664-248742---30258--588304445532444123202
Q gi|254780675|r 270 DGSVSSMQAEKLLLSAGVQGNIENI-GLEKIGVKT-SNGCII-VDGYGR---TNVPG--IYAIGDVAGAPMLAHKAEHEG 341 (481)
Q Consensus 270 dG~~~~i~~D~vl~a~Gr~Pn~~~L-~Le~~gi~~-~~g~i~-vd~~~q---Ts~p~--IyA~GDv~g~~~l~~~A~~qg 341 (481)
.|+++++++|.||+|.|++- ++.- .|+..||+- .||.|. ..+..+ ||+|| |||||||--+--|.-+|.+||
T Consensus 420 pGsE~~~~AdLVLLAmGFvG-PE~~GlL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EG 498 (517)
T TIGR01317 420 PGSEEVFEADLVLLAMGFVG-PEQAGLLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEG 498 (517)
T ss_pred CCCCCCCHHHEEEEECCCCC-CCCCCCHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 79752011012332026757-64200314444443778746632367776588718972687624898803778888887
Q ss_pred HHHHHHH
Q ss_conf 5555430
Q gi|254780675|r 342 IICIEKI 348 (481)
Q Consensus 342 ~~aa~~i 348 (481)
|-||+..
T Consensus 499 R~aA~aV 505 (517)
T TIGR01317 499 RKAARAV 505 (517)
T ss_pred HHHHHHH
T ss_conf 8999986
No 66
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.9e-27 Score=212.94 Aligned_cols=290 Identities=28% Similarity=0.378 Sum_probs=190.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
.|||+|+||||||-+||+++++.|.+.-++ .+++||.-+-. . .+. .| .+.+....++
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~-aerfGGQvldT-----------~----~IE---Nf----Isv~~teGpk 267 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDT-----------M----GIE---NF----ISVPETEGPK 267 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHH-HHHHCCEECCC-----------C----CHH---HE----ECCCCCCCHH
T ss_conf 834999868863167899998612111001-56518820000-----------0----333---30----0565454668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 999999999985344687630141421000-0011222210023687520013555543225863899724552575431
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWG-KATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G-~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
+......+++ ++.||++.. .+.-.-+. . ...........+...++++.+|+|||++.
T Consensus 268 l~~ale~Hv~-----------~Y~vDimn~qra~~l~~a-----~------~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 268 LAAALEAHVK-----------QYDVDVMNLQRASKLEPA-----A------VEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHH-----------HCCCHHHHHHHHHCCEEC-----C------CCCCCEEEEECCCCEECCCEEEEECCCCH
T ss_conf 9999999876-----------468245533434202015-----7------88860799954783511316998427642
Q ss_pred CCCCCCCCCCCC---C---CCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 110111345554---2---2124521113334443215654332100023210133310000000012222222122210
Q gi|254780675|r 163 RHIEGIEPDSHL---I---WTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQ 236 (481)
Q Consensus 163 ~~~~g~~~~~~~---~---~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~ 236 (481)
+.+.....+.+. + -.+|.-|. -.|+++|||||..|+|.|--|+.+-..||+++..+++- . -+.++
T Consensus 326 Rn~nvPGE~e~rnKGVayCPHCDGPLF---~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--A----D~VLq 396 (520)
T COG3634 326 RNMNVPGEDEYRNKGVAYCPHCDGPLF---KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--A----DAVLQ 396 (520)
T ss_pred HCCCCCCHHHHHHCCEEECCCCCCCCC---CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH--H----HHHHH
T ss_conf 008998568873178266888998651---79647998888612888876775555131121060321--5----78999
Q ss_pred HHHHHC-CCCCCCCHHHHHHCCCCCCCC-EEEE-ECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECC
Q ss_conf 012201-233221001344202234310-1244-0367402110232243057422000023222112357-32664248
Q gi|254780675|r 237 RSLQKR-GIKILTESKISSVKQKGDMVS-VQVE-RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDG 312 (481)
Q Consensus 237 ~~l~~~-Gv~i~~~~~v~~v~~~~~~~~-v~~~-~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~ 312 (481)
+.|+.. ++++++|++-++|.++++.+. +++. +.+|+...++-+-|++-+|..|||++ |+.+ ++.+ +|.|+||.
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-Vel~~rGEIivD~ 473 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDA 473 (520)
T ss_pred HHHHCCCCCEEEECCEEEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHH--HHCH-HHCCCCCCEEEEC
T ss_conf 997327984898223146876477501132778536785467874015899703468167--6151-1117676478855
Q ss_pred CCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHHCC
Q ss_conf 7423025858830444553-2444123202555543024
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i~~ 350 (481)
...||+|+|||+|||+..+ ...-.|+-+|..|+-+.+.
T Consensus 474 ~g~T~vpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 474 RGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 787678723533753577410489982675133333314
No 67
>KOG2495 consensus
Probab=99.93 E-value=1.2e-26 Score=212.25 Aligned_cols=295 Identities=25% Similarity=0.379 Sum_probs=199.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 434899989857999999999879939999788-8862463256737088999999999998421178213487544999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
+=-|||+|+|-+|.+....+-..-..|++|... .+==|-+. ||- .-+. +..+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----pS~---------------------~vGT--ve~r 107 (491)
T KOG2495 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----PST---------------------TVGT--VELR 107 (491)
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECC----CCC---------------------CCCC--EEEH
T ss_conf 753999857528899987526643424996463006873146----776---------------------4462--4310
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
.+.+-.+....+. ..++.+++-++.-+|+..-+|....... ....-+-.+.+||+|||+|+.|
T Consensus 108 SIvEPIr~i~r~k---------~~~~~y~eAec~~iDp~~k~V~~~s~t~--------~~~~~e~~i~YDyLViA~GA~~ 170 (491)
T KOG2495 108 SIVEPIRAIARKK---------NGEVKYLEAECTKIDPDNKKVHCRSLTA--------DSSDKEFVIGYDYLVIAVGAEP 170 (491)
T ss_pred HHHHHHHHHHHCC---------CCCCEEEECCCEEECCCCCEEEEEEECC--------CCCCCEEEECCCEEEEECCCCC
T ss_conf 3455689886225---------7871698626076066666798764126--------8886126602668999626777
Q ss_pred C--CCCCCCCCCCCCCCCCCCEE----------CCCCC-------C---CCCCCCCCCCCCCCHHHHHCC----------
Q ss_conf 1--10111345554221245211----------13334-------4---432156543321000232101----------
Q gi|254780675|r 163 R--HIEGIEPDSHLIWTYFDALK----------PSKTP-------K---SLIVMGSGAIGVEFSSFYKSL---------- 210 (481)
Q Consensus 163 ~--~~~g~~~~~~~~~t~~~~l~----------l~~~p-------~---~ivIiGgG~ig~E~A~~l~~l---------- 210 (481)
+ .+||+...+.+..-..|+.+ ...+| + +++|||||++|+|||.-++.+
T Consensus 171 ~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp 250 (491)
T KOG2495 171 NTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYP 250 (491)
T ss_pred CCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 77899751101046664367999999999888875258998577540578999888876224567778778788998604
Q ss_pred ----CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf ----3331000000001222222212221001220123322100134420223431012440367402110232243057
Q gi|254780675|r 211 ----DVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 211 ----G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
..+||+++..|.+|+.||+.+.+++++.|.+.||.+.+++.|..+.... +..+..||+.++|+.-.++|++|
T Consensus 251 ~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~~~~iPYG~lVWatG 326 (491)
T KOG2495 251 ELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGEIEEIPYGLLVWATG 326 (491)
T ss_pred CCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE----EEEECCCCCEEEECCEEEEECCC
T ss_conf 13203489842101457788899999999998643160343360799606718----99972788355303247995478
Q ss_pred CE--EEEECCCCCCCCCCCCCEEEEECCCCEE-ECCCCEEECCCC---CCCCCCCCCCCCHHHHHHHH
Q ss_conf 42--2000023222112357326642487423-025858830444---55324441232025555430
Q gi|254780675|r 287 VQ--GNIENIGLEKIGVKTSNGCIIVDGYGRT-NVPGIYAIGDVA---GAPMLAHKAEHEGIICIEKI 348 (481)
Q Consensus 287 r~--Pn~~~L~Le~~gi~~~~g~i~vd~~~qT-s~p~IyA~GDv~---g~~~l~~~A~~qg~~aa~~i 348 (481)
.. |-+..|. ++.+=+ +|.++.|||+||. +.+||||+|||+ +.++++.+|.+||.++|.++
T Consensus 327 ~~~rp~~k~lm-~~i~e~-~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495 327 NGPRPVIKDLM-KQIDEQ-GRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred CCCCHHHHHHH-HCCCCC-CCEEEEEECEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87760246675-248866-7324552012440676762772132246567607789888889999999
No 68
>KOG0404 consensus
Probab=99.92 E-value=4.5e-25 Score=200.93 Aligned_cols=285 Identities=24% Similarity=0.329 Sum_probs=185.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-----CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3489998985799999999987993999978888-----62463256737088999999999998421178213487544
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-----GGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEF 79 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-----GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (481)
-.|+|||+|||++.||+++++..+|.+|+|.... ||.-. .-..+.+.+.|.- .+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt---------------TTT~veNfPGFPd------gi 67 (322)
T KOG0404 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT---------------TTTDVENFPGFPD------GI 67 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEE---------------EEECCCCCCCCCC------CC
T ss_conf 03899835806777899976502675688111116868886345---------------6520134899975------45
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99999999999999853446876301414210000011222210023687520013555543225863899724552575
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
..+.++++.++...+. |.+++..+ |+ ...............+.++++.+|+|||
T Consensus 68 ~G~~l~d~mrkqs~r~-----------Gt~i~tEt--------Vs-------kv~~sskpF~l~td~~~v~~~avI~atG 121 (322)
T KOG0404 68 TGPELMDKMRKQSERF-----------GTEIITET--------VS-------KVDLSSKPFKLWTDARPVTADAVILATG 121 (322)
T ss_pred CCHHHHHHHHHHHHHH-----------CCEEEEEE--------HH-------HCCCCCCCEEEEECCCCEEEEEEEEECC
T ss_conf 6688999999888751-----------64654100--------22-------2223689769884377245306999216
Q ss_pred CCCCCCCCCCCCCCCCCC--------CCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 431110111345554221--------245211133344432156543321000232101333100000000122222221
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWT--------YFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEI 231 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t--------~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~ 231 (481)
++.+++..........|. +|.+- .-..-|-++|||||..+||-|.+|...+++|++++|++.+- .
T Consensus 122 AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaa-pifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------A 194 (322)
T KOG0404 122 ASAKRLHLPGEGEGEFWQRGISACAVCDGAA-PIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------A 194 (322)
T ss_pred CCEEEEECCCCCCCHHHHCCCCHHHCCCCCC-HHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEHHHHH------H
T ss_conf 3012465478775257763640531236765-21158745998586788789998874143799999712446------7
Q ss_pred CCCC-CHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEE
Q ss_conf 2221-00122012332210013442022343-1012440-367402110232243057422000023222112357-326
Q gi|254780675|r 232 SQFV-QRSLQKRGIKILTESKISSVKQKGDM-VSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGC 307 (481)
Q Consensus 232 ~~~~-~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~ 307 (481)
++.. ++.+++-+|++++|+.+.+...+++. -.+.+++ ..|+...++++-+++++|..|||+.| +. .+++| .|+
T Consensus 195 s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GY 271 (322)
T KOG0404 195 SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGY 271 (322)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHH--CC-CEEECCCCE
T ss_conf 789999875399769993112200206714024369874144750132024069971578266674--27-342136750
Q ss_pred EEEC-CCCEEECCCCEEECCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 6424-8742302585883044455-3244412320255554
Q gi|254780675|r 308 IIVD-GYGRTNVPGIYAIGDVAGA-PMLAHKAEHEGIICIE 346 (481)
Q Consensus 308 i~vd-~~~qTs~p~IyA~GDv~g~-~~l~~~A~~qg~~aa~ 346 (481)
|++- ..-.||+|++||+|||.+. +..+-.|...|.++|-
T Consensus 272 i~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaal 312 (322)
T KOG0404 272 IVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred EEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 89626864455652453164312788998866335346540
No 69
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=2.9e-22 Score=180.55 Aligned_cols=280 Identities=28% Similarity=0.381 Sum_probs=181.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-
Q ss_conf 34899989857999999999879939999788-8862463256737088999999999998421178213487544999-
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE- 82 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~- 82 (481)
-.|.|||+||||++||..|++.|..|+++|+. ..||- +.+| || .+.++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP----------------------------~~kl~k 173 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IP----------------------------DFKLPK 173 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CC----------------------------HHHCCC
T ss_conf 67999888951555889998689879982666777447-9814-84----------------------------464642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-C
Q ss_conf 999999999998534468763014142100000112222100236875200135555432258638997245525754-3
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-R 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~ 161 (481)
+++++.. ..+++.|+++..+..+=. .++.. +-.-.+|.++++||+ .
T Consensus 174 ~i~d~~i-----------~~l~~~Gv~~~~~~~vG~---~it~~-------------------~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 174 DILDRRL-----------ELLERSGVEFKLNVRVGR---DITLE-------------------ELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHH-----------HHHHHCCCEEEECCEECC---CCCHH-------------------HHHHHHCEEEEECCCCC
T ss_conf 0689999-----------999874909998667799---67899-------------------98653287999326678
Q ss_pred CCC--CCCCCCCCCCCCCCCCCE--------E-C--CCCC----CCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCCC
Q ss_conf 111--011134555422124521--------1-1--3334----443215654332100023210133-31000000001
Q gi|254780675|r 162 PRH--IEGIEPDSHLIWTYFDAL--------K-P--SKTP----KSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDRI 223 (481)
Q Consensus 162 p~~--~~g~~~~~~~~~t~~~~l--------~-l--~~~p----~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~l 223 (481)
|+. +|+.+ ...+....++| . . ...| ++++|||||.++++++....++|. +|+.+++..+=
T Consensus 221 ~~~l~i~g~d--~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~ 298 (457)
T COG0493 221 PRPLDIPGED--AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD 298 (457)
T ss_pred CCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 8768988867--77761687999999998603565446777789858998998888999888874175399992355665
Q ss_pred --CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CC-E---EEEEC--------------CCCEEEEECCCEE
Q ss_conf --22222221222100122012332210013442022343-10-1---24403--------------6740211023224
Q gi|254780675|r 224 --LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDM-VS-V---QVERK--------------DGSVSSMQAEKLL 282 (481)
Q Consensus 224 --l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~-v---~~~~~--------------dG~~~~i~~D~vl 282 (481)
...++...++...+...++|+++++.....++..++++ +. + ..... .|+...+++|.|+
T Consensus 299 ~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~ 378 (457)
T COG0493 299 DETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVI 378 (457)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf 66785444106788776775477543156763586658980840112212446665553445773226855875456688
Q ss_pred ECCCCEEEEECCCCCCCCCCCC-CEEEEECCCC-EEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 3057422000023222112357-3266424874-23025858830444553244412320255554302
Q gi|254780675|r 283 LSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYG-RTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 283 ~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~-qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
.|+|..|+-..+.+...++..+ +|.|.+|+.+ |||.|++||.||+..+..++-.|..+|+.++..|-
T Consensus 379 ~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 379 LAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf 666136675432110012353767855103222124687636575442361341407640329998756
No 70
>KOG1346 consensus
Probab=99.86 E-value=1.6e-22 Score=182.45 Aligned_cols=406 Identities=19% Similarity=0.293 Sum_probs=233.1
Q ss_pred CCCCEEEECCCHHHHHHH--HHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCC
Q ss_conf 643489998985799999--9999879939999788-88624632567370889999999999984211782134-8754
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAA--IRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVA-GKVE 78 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA--~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 78 (481)
++.-.+|||+|.|..+++ ++..+.+.+|++|-.+ ++- -++- --||.||...+ .+..+......|... ..+-
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmRP-PLSKELW~~~d-pn~~k~lrfkqwsGkeRsif 251 (659)
T KOG1346 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMRP-PLSKELWWYGD-PNSAKKLRFKQWSGKERSIF 251 (659)
T ss_pred CCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCC---CCCC-CCCHHCEECCC-CCHHHHEEECCCCCCCCEEE
T ss_conf 4585567737734432045665678873588603676776---5689-74421135699-97154043010478643157
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 49999999999999985344687630141421000001122221002368752001355554322586389972455257
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIAT 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIAT 158 (481)
|..+.++-..++..+ ...-||-+.+|.-. |.+...+. ........+|.+|+++|||
T Consensus 252 fepd~FfvspeDLp~---------~~nGGvAvl~G~kv------vkid~~d~---------~V~LnDG~~I~YdkcLIAT 307 (659)
T KOG1346 252 FEPDGFFVSPEDLPK---------AVNGGVAVLRGRKV------VKIDEEDK---------KVILNDGTTIGYDKCLIAT 307 (659)
T ss_pred ECCCCCEECHHHCCC---------CCCCCEEEEECCCE------EEEECCCC---------EEEECCCCEEEHHHEEEEC
T ss_conf 558850448577740---------02685689734504------78610007---------6882278572121046532
Q ss_pred CCCCCCCCCCCCCCCCCC---C----CCCCEECCCC---CCCCCCCCCCCCCCCCHHHHHC----CCCCCCCEEC----C
Q ss_conf 543111011134555422---1----2452111333---4443215654332100023210----1333100000----0
Q gi|254780675|r 159 GARPRHIEGIEPDSHLIW---T----YFDALKPSKT---PKSLIVMGSGAIGVEFSSFYKS----LDVDVSLIEV----K 220 (481)
Q Consensus 159 Gs~p~~~~g~~~~~~~~~---t----~~~~l~l~~~---p~~ivIiGgG~ig~E~A~~l~~----lG~~Vtli~~----~ 220 (481)
|.+|+.++.++..+.-+. | ..|+-++++. -+++.|||+|++|.|+|+.+.+ .|.+|+.+-. +
T Consensus 308 G~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm 387 (659)
T KOG1346 308 GVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM 387 (659)
T ss_pred CCCCCCCHHHHHCCHHHHHHEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 77766415656438876622566745327889987652222589975750145678788776620684899840012876
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCC
Q ss_conf 00122222221222100122012332210013442022343101244036740211023224305742200002322211
Q gi|254780675|r 221 DRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 (481)
Q Consensus 221 ~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g 300 (481)
..+||. -+++..+..+++.||.++.++.|+++.+....+ .+++.||. ++..|.|++|+|-.||++- .+..|
T Consensus 388 ~kiLPe---yls~wt~ekir~~GV~V~pna~v~sv~~~~~nl--~lkL~dG~--~l~tD~vVvavG~ePN~el--a~~sg 458 (659)
T KOG1346 388 EKILPE---YLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL--VLKLSDGS--ELRTDLVVVAVGEEPNSEL--AEASG 458 (659)
T ss_pred HHHHHH---HHHHHHHHHHHHCCCEECCCHHHHHHHHCCCCE--EEEECCCC--EEEECEEEEEECCCCCHHH--CCCCC
T ss_conf 665178---887888999985694125410246665202126--89925887--6451359998357886433--04567
Q ss_pred CCCCC--EEEEECCCCEEECCCCEEECCCC-------CCCCCCC--CCCCCHHHHHHHHCCCCCCCCCCCC---------
Q ss_conf 23573--26642487423025858830444-------5532444--1232025555430246644321223---------
Q gi|254780675|r 301 VKTSN--GCIIVDGYGRTNVPGIYAIGDVA-------GAPMLAH--KAEHEGIICIEKIAGKSKVYPLDKS--------- 360 (481)
Q Consensus 301 i~~~~--g~i~vd~~~qTs~p~IyA~GDv~-------g~~~l~~--~A~~qg~~aa~~i~~~~~~~~~d~~--------- 360 (481)
++.|+ |+..||..|+ ...|||++||++ |....-| -|.-.||+|++||.|-++ |..+.
T Consensus 459 LeiD~~lGGfrvnaeL~-ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak--py~hqsmFWsdlgP 535 (659)
T KOG1346 459 LEIDEKLGGFRVNAELK-ARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK--PYKHQSMFWSDLGP 535 (659)
T ss_pred CEECCCCCCEEEEHEEE-CCCCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCC--CCCCCCEEECCCCC
T ss_conf 15500037677412000-1543365042445405311100003244324502002654444568--76444502536886
Q ss_pred ------------CCEE-EEEEEHHHEEECCCHHHHHCC-CCCEEEEEEECCCC--------HHHHCC----CCCCEEEEE
Q ss_conf ------------2002-454303340001496876107-97279999964638--------233207----898218999
Q gi|254780675|r 361 ------------KIPG-CTYCNPQVASIGLTEEKARSQ-GLDIRVGKHSFSAN--------GKAITL----GEDSGMIKT 414 (481)
Q Consensus 361 ------------~ip~-~vft~P~ia~vG~te~ea~~~-g~~~~~~~~~~~~~--------~~~~~~----~~~~G~~ki 414 (481)
+.|+ .||..|. .--..+++.++ +.++......-+++ .-+..- ..+.|- -+
T Consensus 536 ~igyeaIGlvDSSLpTVgVfA~p~---s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygK-gV 611 (659)
T KOG1346 536 EIGYEAIGLVDSSLPTVGVFALPS---SATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGK-GV 611 (659)
T ss_pred CCCCCEEEECCCCCCCCEEEECCC---CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EE
T ss_conf 346112200036787414553365---34460232221588886654543322234577678887668421245673-48
Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 99889985999999829988999999999987797789963
Q gi|254780675|r 415 IFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMH 455 (481)
Q Consensus 415 v~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~ 455 (481)
||-.+++.|+|.-+..- =.-|.++-..|+.+-.++||.+
T Consensus 612 iFYl~d~~iVGilLwN~--Fnr~~~AR~II~d~kk~ddlnE 650 (659)
T KOG1346 612 IFYLKDDKIVGILLWNL--FNRIGLARTIINDNKKYDDLNE 650 (659)
T ss_pred EEEECCCCEEEEEEHHH--HCCCHHHHHHHCCCCCHHHHHH
T ss_conf 99962894899985453--1553066887505521256899
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.81 E-value=4e-19 Score=157.73 Aligned_cols=303 Identities=17% Similarity=0.221 Sum_probs=186.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978-88862463256737088999999999998421178213487544
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEF 79 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (481)
|.-+.||+|||+|||||+||+.|++.|+||+|+|. ..+||. |++. ..-.+
T Consensus 173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~I 223 (1026)
T TIGR01372 173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETI 223 (1026)
T ss_pred EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCC
T ss_conf 423204788788967999999996479889997067657775-----------5677------------------87601
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC--CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999999999999853446876301414210000011--2222100236--8752001355554322586389972455
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATL--KNPSEITVSK--PSQPAVQPQHPIPKKVLGEGTYKAKHII 155 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f--~~~~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~a~~iv 155 (481)
|.....++..+.+..|.. ..+|+++.=+--| =|.|.+.... .+.......+.... --++++|++||
T Consensus 224 DG~PA~~W~~~t~aeL~a-------~~~v~~L~RTT~~G~YD~N~~g~~ER~~DHL~~P~~g~~Re---RlWrvRAkrvV 293 (1026)
T TIGR01372 224 DGKPAADWAAATVAELEA-------LPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPAKGVPRE---RLWRVRAKRVV 293 (1026)
T ss_pred CCCCHHHHHHHHHHHHHC-------CCCEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCC---EEEEECCCEEE
T ss_conf 780189999999999741-------89816743540554514774787620113667788748533---05777253456
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCE--ECC----CCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCCCCCCCC
Q ss_conf 257543111011134555422124521--113----3344432156543321000232101333-100000000122222
Q gi|254780675|r 156 IATGARPRHIEGIEPDSHLIWTYFDAL--KPS----KTPKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDRILPVED 228 (481)
Q Consensus 156 IATGs~p~~~~g~~~~~~~~~t~~~~l--~l~----~~p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~ll~~~d 228 (481)
+|||+.-++|.+-.+|-..++- .++. .+. ...+|++|.=.-..|++.|..|+..|.+ |.||+.++++-|
T Consensus 294 LA~GA~ERPlVF~nND~PGvMl-A~A~~~YlnRygV~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p--- 369 (1026)
T TIGR01372 294 LATGALERPLVFANNDRPGVML-AGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP--- 369 (1026)
T ss_pred ECCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH---
T ss_conf 6057644778688319532333-679999888750054870589821735899999999648950699961788752---
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC-CCCCEEEE-------ECCCCEEEEECCCEEECCCCEEEEECCCCCCCC
Q ss_conf 2212221001220123322100134420223-43101244-------036740211023224305742200002322211
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKG-DMVSVQVE-------RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~-~~~~v~~~-------~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g 300 (481)
...+.-++.|++++++..|...+... ..-.+.+. ...|..+.|+||.++++-|..|.+-...-..-.
T Consensus 370 -----~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK 444 (1026)
T TIGR01372 370 -----ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGK 444 (1026)
T ss_pred -----HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCC
T ss_conf -----479999875985986450221257721010468886244001135785247853898727766212220005883
Q ss_pred CCCCC--E-EEEECCCCEEECCCCEEECCCCCCCCCCC---CCCCCHHHHHHHHCCC
Q ss_conf 23573--2-66424874230258588304445532444---1232025555430246
Q gi|254780675|r 301 VKTSN--G-CIIVDGYGRTNVPGIYAIGDVAGAPMLAH---KAEHEGIICIEKIAGK 351 (481)
Q Consensus 301 i~~~~--g-~i~vd~~~qTs~p~IyA~GDv~g~~~l~~---~A~~qg~~aa~~i~~~ 351 (481)
++++. - ++.=+.+.+=..+++-.+|=++|-.-|+- -+...|..||.+..-.
T Consensus 445 ~~W~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~G~~ 501 (1026)
T TIGR01372 445 LAWDEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAAGAE 501 (1026)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 430133431586675544366772785300010107999999999999999861643
No 72
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=99.81 E-value=2.1e-18 Score=152.49 Aligned_cols=316 Identities=16% Similarity=0.220 Sum_probs=168.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEE-------CCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8643489998985799999999987993999978-8886246325-------6737088999999999998421178213
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNW-------GCIPTKSLLRSAEILDHIQNAQHYGLNV 73 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~-------GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 73 (481)
|++ |+||||||+|++++..|.+.|+.++++|+ +.+||+..+. +++-.-+....+ ..+-...+|.+.-
T Consensus 1 ~Kr--VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Nts---k~~~~fSDfP~P~ 75 (532)
T pfam00743 1 AKK--VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS---KEMSCFSDFPFPE 75 (532)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECC---CHHHCCCCCCCCC
T ss_conf 987--99989729999999999877998299977999735066888878886764897068589---0051389998998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHCCCEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 48754499999999999999853--44687630141421000001122--221002368752001355554322586389
Q gi|254780675|r 74 AGKVEFNIEDIVKRSRDISHRLN--RGVEFLMHKNKVDIIWGKATLKN--PSEITVSKPSQPAVQPQHPIPKKVLGEGTY 149 (481)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 149 (481)
....-....++.++.+.+++... +.++. +..|.-+.-...+.. ...|.... .....+-
T Consensus 76 ~~p~f~~~~~v~~YL~~YA~hF~L~~~Irf---~t~V~~V~~~~d~~~~g~W~V~~~~---------------~g~~~~~ 137 (532)
T pfam00743 76 DYPNFMHNSKFLEYLRMFAKHFDLLKYIQF---KTTVCSVTKRPDFSTSGQWEVVTEH---------------EGKQESA 137 (532)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEC---CCEEEEEEECCCCCCCCEEEEEEEE---------------CCEEEEE
T ss_conf 788998989999999999998099673765---7789999976676668618999985---------------8908899
Q ss_pred EEEEEEECCC--CCCCCC----CCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCC
Q ss_conf 9724552575--431110----1113455542212452111333-44432156543321000232101333100000000
Q gi|254780675|r 150 KAKHIIIATG--ARPRHI----EGIEPDSHLIWTYFDALKPSKT-PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDR 222 (481)
Q Consensus 150 ~a~~ivIATG--s~p~~~----~g~~~~~~~~~t~~~~l~l~~~-p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ 222 (481)
.+|.|+|||| +.|+.| ||++...-.++.|.+.-+.+.+ .|+++|||+|..|+++|.-+++...+|++..|+..
T Consensus 138 ~fD~ViVctG~~~~P~iP~~~~pG~e~F~G~iiHS~~Yk~~~~f~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~ 217 (532)
T pfam00743 138 VFDAVMVCTGHHTNPHLPLESFPGINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGS 217 (532)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHCCCCEEEEHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCC
T ss_conf 97799994667786876777789611179679874427986885997499978889841059999852786899970685
Q ss_pred -CCCCC-C----CCC------------------CCCC-CHH----HHH--CC--------------------------CC
Q ss_conf -12222-2----221------------------2221-001----220--12--------------------------33
Q gi|254780675|r 223 -ILPVE-D----SEI------------------SQFV-QRS----LQK--RG--------------------------IK 245 (481)
Q Consensus 223 -ll~~~-d----~~~------------------~~~~-~~~----l~~--~G--------------------------v~ 245 (481)
++|+. + -|+ .+.+ .+. +.. .| |.
T Consensus 218 wv~pr~~~~G~P~D~~~~~r~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~ygl~P~~~~~~~~p~i~d~l~~~I~~G~I~ 297 (532)
T pfam00743 218 WVLSRVSDWGYPWDMLLTTRFCSFLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKLAKEPIVNDELPNRILCGAVK 297 (532)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 32454555788378999888999999871699999999999875158212588777776556640276777574258449
Q ss_pred CCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCEE-----ECCC
Q ss_conf 22100134420223431012440367402110232243057422000023222112357326642487423-----0258
Q gi|254780675|r 246 ILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRT-----NVPG 320 (481)
Q Consensus 246 i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~~~qT-----s~p~ 320 (481)
++ ..++++.++ .|. ..||+. ....|.|++|||.+.....| ++.=+...+..+. =|..+ .+|.
T Consensus 298 vk--p~I~~f~~~----~V~--F~DGt~-~e~iD~VI~aTGY~~~fPFL--~~~~~~~~~~~~~--LYk~vfpp~l~~Pt 364 (532)
T pfam00743 298 VK--PSVKEFTET----SAI--FEDGTV-EEDIDVVIFATGYTFSFPFL--EESLVKVETNKIS--LYKYVFPPNLEKPT 364 (532)
T ss_pred EC--CCEEEEECC----EEE--ECCCCC-CCCCCEEEECCCCCCCCCCC--CCCCCCCCCCCEE--EEEEECCCCCCCCC
T ss_conf 83--791599799----899--899989-43699899899989888887--7556787888400--14353378778986
Q ss_pred CEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 588304445532444123202555543024664
Q gi|254780675|r 321 IYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSK 353 (481)
Q Consensus 321 IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~ 353 (481)
+.-+|=+-....+.+.+..|++.+++-..|..+
T Consensus 365 LAfIG~v~~~g~~~p~~ElQArw~a~v~~G~~~ 397 (532)
T pfam00743 365 LAIIGLIQPLGSIIPTVELQARWAVRVFKGLCK 397 (532)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 799985353467752699999999999707878
No 73
>KOG0399 consensus
Probab=99.80 E-value=4.5e-19 Score=157.36 Aligned_cols=280 Identities=21% Similarity=0.298 Sum_probs=158.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 3489998985799999999987993999978-888624632567370889999999999984211782134875449999
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
.-|.|||+||||++||-.+.+.|..|++.|+ +++||- + .||+ |.+.+.+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l------------------------~ygi-----pnmkldk 1835 (2142)
T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-L------------------------MYGI-----PNMKLDK 1835 (2142)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-E------------------------EECC-----CCCCHHH
T ss_conf 47999746841466899986447679999715776745-6------------------------6168-----7521327
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-C
Q ss_conf -99999999998534468763014142100000112222100236875200135555432258638997245525754-3
Q gi|254780675|r 84 -IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-R 161 (481)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~ 161 (481)
+++|.- .++.+.||+++.-.- ++.+ +... +-.-..|.+|+|||| .
T Consensus 1836 ~vv~rrv-----------~ll~~egi~f~tn~e--igk~-vs~d-------------------~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399 1836 FVVQRRV-----------DLLEQEGIRFVTNTE--IGKH-VSLD-------------------ELKKENDAIVLATGSTT 1882 (2142)
T ss_pred HHHHHHH-----------HHHHHHCCEEEEECC--CCCC-CCHH-------------------HHHHCCCEEEEEECCCC
T ss_conf 9999999-----------998861854885032--2565-5678-------------------87530575999827887
Q ss_pred CCCCCCCCCCCCCCCC-------C-----CCCEE---CCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCCC--
Q ss_conf 1110111345554221-------2-----45211---133344432156543321000232101333-1000000001--
Q gi|254780675|r 162 PRHIEGIEPDSHLIWT-------Y-----FDALK---PSKTPKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDRI-- 223 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t-------~-----~~~l~---l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~l-- 223 (481)
|+.+|...-+.+.+.- + ++.++ +..-.|+++|||||.+|-.+-..-.|.|++ |--++-.++.
T Consensus 1883 prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~ 1962 (2142)
T KOG0399 1883 PRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPP 1962 (2142)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCHHHCCCEECCEEECCCCCC
T ss_conf 76788898533430879999987577650443445321467976999878876654314202203230102253588986
Q ss_pred -------CCCCCCCC-------------------CCCCCHHHHHCCCCCCCCHHHH--HHCCCCCCCCEEEEECCCCEEE
Q ss_conf -------22222221-------------------2221001220123322100134--4202234310124403674021
Q gi|254780675|r 224 -------LPVEDSEI-------------------SQFVQRSLQKRGIKILTESKIS--SVKQKGDMVSVQVERKDGSVSS 275 (481)
Q Consensus 224 -------l~~~d~~~-------------------~~~~~~~l~~~Gv~i~~~~~v~--~v~~~~~~~~v~~~~~dG~~~~ 275 (481)
-|.+++-+ -..+.+.|....=...++-+.. ++++++.+.. .+.-.+++++.
T Consensus 1963 ~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w-~~~ei~~see~ 2041 (2142)
T KOG0399 1963 ERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRW-QMKEINNSEEI 2041 (2142)
T ss_pred CCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCE-EEEECCCCCEE
T ss_conf 66889988668557885055588998708996103645401321688746447899888876687736-89872785103
Q ss_pred EECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEE-CCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 10232243057422000023222112357-326642-487423025858830444553244412320255554302
Q gi|254780675|r 276 MQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIV-DGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 276 i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~v-d~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
+++|.+++|.|..-. +....+..+++.| ++.|.+ ++.+.|++++|||+|||-.+.-|+-+|.++||-+|+.+-
T Consensus 2042 ~eadlv~lamgf~gp-e~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399 2042 IEADLVILAMGFVGP-EKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred EECCEEEEECCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHHHHHHHH
T ss_conf 442452432025684-133353327554765453677765333455246405546786579998033268899999
No 74
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.1e-14 Score=125.46 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=106.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 98643489998985799999999987993-9999788-886246325673708899999999999842117821-34875
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFK-VAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLN-VAGKV 77 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~-V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~-~~~~~ 77 (481)
|..++||+|||||++|+.+|.+|.+.|.. ++|+||. .+||+.= +-+-|+-.+..+.... ..+.+.+. ....+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~-~~ry~~l~~~~p~~~~----~~~~~p~~~~~~~~ 79 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR-YNRYPGLRLDSPKWLL----GFPFLPFRWDEAFA 79 (443)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCCEEEECCCCCCC----CCCCCCCCCCCCCC
T ss_conf 667554899898788999999999759986799970576678655-5668716767974011----58888877655677
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEEEEEE
Q ss_conf 44999999999999998534468763014142100000112222100236875200135555432258638--9972455
Q gi|254780675|r 78 EFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGT--YKAKHII 155 (481)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~--~~a~~iv 155 (481)
+...+..+..+..+.......- .-...|+. +.+.+.. ..+......+.+ ++++++|
T Consensus 80 --~~~~~~~y~~~~~~~y~~~~~i-~~~~~v~~----~~~~~~~---------------~~w~V~~~~~~~~~~~a~~vV 137 (443)
T COG2072 80 --PFAEIKDYIKDYLEKYGLRFQI-RFNTRVEV----ADWDEDT---------------KRWTVTTSDGGTGELTADFVV 137 (443)
T ss_pred --CCCCHHHHHHHHHHHHCCEEEE-ECCCCEEE----EEEECCC---------------CEEEEEECCCCCCEEECCEEE
T ss_conf --7643899999999983560450-21452568----8630588---------------706999648875225126799
Q ss_pred ECCC--CCCCCCC--CCCCCCCCCCCCCCCEE-CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCC
Q ss_conf 2575--4311101--11345554221245211-1333444321565433210002321013331000000001
Q gi|254780675|r 156 IATG--ARPRHIE--GIEPDSHLIWTYFDALK-PSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRI 223 (481)
Q Consensus 156 IATG--s~p~~~~--g~~~~~~~~~t~~~~l~-l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~l 223 (481)
+||| +.|..|+ |.+...-.++.|-+.-+ .+-..|+|+|||+|+.|++++..+...|.+||+..|.+..
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8305789897888788666686344410169613427887999898703999999997306717898517975
No 75
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.54 E-value=2.2e-14 Score=123.30 Aligned_cols=196 Identities=21% Similarity=0.339 Sum_probs=110.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCC----CCCCCCCC--------------EE--CCCCCCCCCCC---CCCC--CCC
Q ss_conf 389972455257543111011134555----42212452--------------11--13334443215---6543--321
Q gi|254780675|r 147 GTYKAKHIIIATGARPRHIEGIEPDSH----LIWTYFDA--------------LK--PSKTPKSLIVM---GSGA--IGV 201 (481)
Q Consensus 147 ~~~~a~~ivIATGs~p~~~~g~~~~~~----~~~t~~~~--------------l~--l~~~p~~ivIi---GgG~--ig~ 201 (481)
.++.+..+|+|||-.+....-.+.-++ .++|+-++ +. --+.|+|+++| |+-. ++.
T Consensus 297 ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~PkrVaFIqCVGSRD~~~~n 376 (622)
T COG1148 297 VELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGN 376 (622)
T ss_pred EEEEECEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99971529997246555710043338887744444789998735579988617713799987468999961465666688
Q ss_pred CCH----HHH--------H-CC-CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEE
Q ss_conf 000----232--------1-01-333100000000122222221222100122012332210013442022343-10124
Q gi|254780675|r 202 EFS----SFY--------K-SL-DVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQV 266 (481)
Q Consensus 202 E~A----~~l--------~-~l-G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~ 266 (481)
.+- +++ . +. ..+|++.+..=|-.. ...-++..+.-++.||++..+ ++.+|...+++ ..|+.
T Consensus 377 ~YCSrvCCm~slKqA~~Iker~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~~GV~fIRG-rvaeI~e~p~~~liV~~ 452 (622)
T COG1148 377 PYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRV 452 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CCHHHHHHHHHHHHCCEEECC-CEEEEEECCCCCEEEEE
T ss_conf 22448999999877899887589853899999712466---426999998788608536646-41016887998369998
Q ss_pred EE-CCCCEEEEECCCEEECCCCEEEE--ECCCCCCCCCCCC-CEEEEEC-CCC---EEECCCCEEECCCCCCCCCCCCCC
Q ss_conf 40-36740211023224305742200--0023222112357-3266424-874---230258588304445532444123
Q gi|254780675|r 267 ER-KDGSVSSMQAEKLLLSAGVQGNI--ENIGLEKIGVKTS-NGCIIVD-GYG---RTNVPGIYAIGDVAGAPMLAHKAE 338 (481)
Q Consensus 267 ~~-~dG~~~~i~~D~vl~a~Gr~Pn~--~~L~Le~~gi~~~-~g~i~vd-~~~---qTs~p~IyA~GDv~g~~~l~~~A~ 338 (481)
++ -.|+..++++|.|++++|..|.- +.+ ...+|++.+ .|++... ..+ +|+.+|||.+|=+.|. .-.+.+.
T Consensus 453 EdTl~g~~~e~~~DLVVLa~Gmep~~g~~ki-a~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP-kdI~~si 530 (622)
T COG1148 453 EDTLTGEVKEIEADLVVLATGMEPSEGAKKI-AKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP-KDIADSI 530 (622)
T ss_pred EECCCCCEECCCCCEEEEEECCCCCCCHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCHHHHH
T ss_conf 6034673111233379995044457656888-8754865178776034787766455567857981003698-4277888
Q ss_pred CCHHHHHHHH
Q ss_conf 2025555430
Q gi|254780675|r 339 HEGIICIEKI 348 (481)
Q Consensus 339 ~qg~~aa~~i 348 (481)
.||..||...
T Consensus 531 aqa~aAA~kA 540 (622)
T COG1148 531 AQAKAAAAKA 540 (622)
T ss_pred HHHHHHHHHH
T ss_conf 7767889989
No 76
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=5.3e-13 Score=113.23 Aligned_cols=330 Identities=18% Similarity=0.295 Sum_probs=174.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC-C---CEEEEEECC---CC-CHHHHHHH------HHHHHHHH
Q ss_conf 986434899989857999999999879-9399997888-8---624632567---37-08899999------99999984
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLG-FKVAIVEYAG-L---GGICLNWGC---IP-TKSLLRSA------EILDHIQN 65 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G-~~V~liEk~~-~---GGtC~~~GC---iP-sK~l~~~a------~~~~~~~~ 65 (481)
|++.||++.||-||+.++.|..+.+.+ .+.+.+|+.. + .|. +--|| +| -|-|+..+ .++++++.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 8764026887048327899987350257525787347888767875-557864445005632553589983079999987
Q ss_pred HHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 211-7821348754499999999999999853446876301414210000011222210023687520013555543225
Q gi|254780675|r 66 AQH-YGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVL 144 (481)
Q Consensus 66 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~ 144 (481)
..+ |..-......+.-.+.-++.+..+.++ ...++ ...|+- +...+... .........
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf---g~~V~~--------------i~~~~~d~---~~~~~~~t~ 139 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRF---GEEVTD--------------ISSLDGDA---VVRLFVVTA 139 (436)
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCC---CCEECC--------------CCCCCCCC---EEEEEEECC
T ss_conf 0657655420023555888999999998408-72336---870122--------------10247763---058999827
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCE-ECCCCC--CCCCCCCCCCCCCCCHHHH-HCC---CCCCCC
Q ss_conf 86389972455257543111011134-555422124521-113334--4432156543321000232-101---333100
Q gi|254780675|r 145 GEGTYKAKHIIIATGARPRHIEGIEP-DSHLIWTYFDAL-KPSKTP--KSLIVMGSGAIGVEFSSFY-KSL---DVDVSL 216 (481)
Q Consensus 145 ~~~~~~a~~ivIATGs~p~~~~g~~~-~~~~~~t~~~~l-~l~~~p--~~ivIiGgG~ig~E~A~~l-~~l---G~~Vtl 216 (481)
+...++|+++||.+|.+|..||.+.. .+.+++.+.+.+ ...+++ ++++|||+|-.|.|.-.-| .+. ..++.+
T Consensus 140 ~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~w 219 (436)
T COG3486 140 NGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNW 219 (436)
T ss_pred CCCEEEEEEEEECCCCCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 88478860379825997678767737575332524889876078654762899847823999999997277875731001
Q ss_pred EECCCCCCCCC---------CCCCCCCC-----------------------------------CHHHH--HCCCCCCCCH
Q ss_conf 00000012222---------22212221-----------------------------------00122--0123322100
Q gi|254780675|r 217 IEVKDRILPVE---------DSEISQFV-----------------------------------QRSLQ--KRGIKILTES 250 (481)
Q Consensus 217 i~~~~~ll~~~---------d~~~~~~~-----------------------------------~~~l~--~~Gv~i~~~~ 250 (481)
+-|+..++|.. .|+..+++ .+.+. +..++++.++
T Consensus 220 itR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ 299 (436)
T COG3486 220 ITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLS 299 (436)
T ss_pred EECCCCCCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 11367777243341345442810377884399899998876117532345888999999999998735888770001355
Q ss_pred HHHHHCCCCCC-CCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCC--CCCC-CCEEEEECCCCEEEC--C---C
Q ss_conf 13442022343-1012440-3674021102322430574220000232221--1235-732664248742302--5---8
Q gi|254780675|r 251 KISSVKQKGDM-VSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKI--GVKT-SNGCIIVDGYGRTNV--P---G 320 (481)
Q Consensus 251 ~v~~v~~~~~~-~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~--gi~~-~~g~i~vd~~~qTs~--p---~ 320 (481)
+++.++..+++ +.+.+.. ..|+.+++++|.|++|||.+..+..+ |+-. -+++ +.|...|++...... | .
T Consensus 300 ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ 378 (436)
T COG3486 300 EVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGR 378 (436)
T ss_pred CEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCHH-HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCE
T ss_conf 2135552789538888764257983688861899803456678646-666778624564687476474565037987630
Q ss_pred CEEECCCCCCCC----CCCCCCCCHHHHHHHHCCCCC
Q ss_conf 588304445532----444123202555543024664
Q gi|254780675|r 321 IYAIGDVAGAPM----LAHKAEHEGIICIEKIAGKSK 353 (481)
Q Consensus 321 IyA~GDv~g~~~----l~~~A~~qg~~aa~~i~~~~~ 353 (481)
||+.|=....+. ....+..-+...++.++|..+
T Consensus 379 ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~ 415 (436)
T COG3486 379 IFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREK 415 (436)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 7981464334666775402799999999998737677
No 77
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=1.3e-13 Score=117.71 Aligned_cols=38 Identities=26% Similarity=0.509 Sum_probs=35.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|.++|||+|||+|.||++||+.+++.|++|+||+|...
T Consensus 9 ~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~ 46 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFP 46 (598)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 56637989999569999999999874990799978899
No 78
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=1.3e-12 Score=110.42 Aligned_cols=37 Identities=43% Similarity=0.656 Sum_probs=34.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 4348999898579999999998799399997888862
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
+|||+|||+|.||++||+.+++.|++|+||+|..+|+
T Consensus 8 e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~ 44 (631)
T PRK07803 8 EYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGK 44 (631)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 0598999964999999999987699879997899998
No 79
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=99.48 E-value=4e-15 Score=128.63 Aligned_cols=82 Identities=37% Similarity=0.631 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC
Q ss_conf 43215654332100023210133310000000012222222122210012201233221001344202234310124403
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK 269 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~ 269 (481)
|++|||||++|||+|++|+++|++||++++.+++||.+|+++++.+++.|+++||+++++++++++++++++..++++++
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~g 80 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLETG 80 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECC
T ss_conf 99999988999999999986392789981257330227988999999999866999974999999999699999999889
Q ss_pred CC
Q ss_conf 67
Q gi|254780675|r 270 DG 271 (481)
Q Consensus 270 dG 271 (481)
||
T Consensus 81 dg 82 (82)
T pfam00070 81 DG 82 (82)
T ss_pred CC
T ss_conf 99
No 80
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.47 E-value=8.9e-13 Score=111.59 Aligned_cols=45 Identities=38% Similarity=0.527 Sum_probs=35.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CE-EEEEECCC
Q ss_conf 643489998985799999999987993999978888-62-46325673
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GG-ICLNWGCI 48 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-GG-tC~~~GCi 48 (481)
.+|||+|||+|.||+.||+.+++. .+|+|++|..+ +| |+...|.|
T Consensus 7 ~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi 53 (535)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGI 53 (535)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCE
T ss_conf 628989999539999999974038-98899978899997278870853
No 81
>PRK08275 putative oxidoreductase; Provisional
Probab=99.47 E-value=4.9e-13 Score=113.45 Aligned_cols=47 Identities=32% Similarity=0.377 Sum_probs=36.1
Q ss_pred EEEEECCCCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHHCCCC
Q ss_conf 26642487423025858830444553-244412320255554302466
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i~~~~ 352 (481)
|+|.||+..||++||.||+|+|++.. .-..-|.-.|++|+.+++...
T Consensus 357 gGI~vD~~~~T~I~GLyAaGE~a~~g~Nsl~~alV~G~~Ag~~aa~~~ 404 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CEEEECCCCCEECCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 539988998650354455002333555412677887999999999997
No 82
>KOG1399 consensus
Probab=99.44 E-value=1.6e-11 Score=102.43 Aligned_cols=303 Identities=18% Similarity=0.210 Sum_probs=145.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCH----HHHHHH--HHHHHHHHHHCCCCCCCCCC
Q ss_conf 3489998985799999999987993999978-8886246325673708----899999--99999984211782134875
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTK----SLLRSA--EILDHIQNAQHYGLNVAGKV 77 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK----~l~~~a--~~~~~~~~~~~~g~~~~~~~ 77 (481)
=+|+|||||||||.+|+.|.+.|..++++|+ +.+||+..+. .+.. ++.+.- +.........+|...-....
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~--~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT--ENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC--CCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCC
T ss_conf 854897856688899999987799836997058745458605--765655432434210468844425799897545711
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 4-499999999999999853446876301414210000011222210023687-52001355554322586389972455
Q gi|254780675|r 78 E-FNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPS-QPAVQPQHPIPKKVLGEGTYKAKHII 155 (481)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~a~~iv 155 (481)
. .+-.++.++.+++++...-.-...+ ++++ ++|.... +.......... .......+|.++
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f---~~~v------------~~v~~~~~gkW~V~~~~~~---~~~~~~ifd~Vv 146 (448)
T KOG1399 85 YFPSHREVLEYLRDYAKHFDLLKMINF---NTEV------------VRVDSIDKGKWRVTTKDNG---TQIEEEIFDAVV 146 (448)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHEEE---CCCE------------EEEEECCCCCEEEEEECCC---CCEEEEEEEEEE
T ss_conf 178888999999999873583462673---4657------------9984056774168981488---640589963899
Q ss_pred ECCCCC--CCCC--CCC--C-CCCCCCCCCCCCEECCCC-CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 257543--1110--111--3-455542212452111333-4443215654332100023210133310000000012222
Q gi|254780675|r 156 IATGAR--PRHI--EGI--E-PDSHLIWTYFDALKPSKT-PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVE 227 (481)
Q Consensus 156 IATGs~--p~~~--~g~--~-~~~~~~~t~~~~l~l~~~-p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~ 227 (481)
+|||-. |+.| ++. + +.++ +++|.+--..+.+ -++++|||.|..|+|.+--+++-..+|++..+ . +.
T Consensus 147 VctGh~~~P~~P~~~g~~~~~f~G~-~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~---~~- 220 (448)
T KOG1399 147 VCTGHYVEPRIPQIPGPGIESFKGK-IIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S---PK- 220 (448)
T ss_pred ECCCCCCCCCCCCCCCCCHHHCCCC-CEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEE-C---CC-
T ss_conf 9556768898876788864006872-1140321576544686699988781489999999986067614643-0---22-
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEE
Q ss_conf 22212221001220123322100134420223431012440367402110232243057422000023222112357326
Q gi|254780675|r 228 DSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGC 307 (481)
Q Consensus 228 d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~ 307 (481)
+.......+. .++-.+. .+..+..++. .+ ..++ ....+|.+++++|..=.... |+..+ .
T Consensus 221 ---~~~~~~~~~~-~~~~~~~--~i~~~~e~~~----~~-~~~~--~~~~~D~ii~ctgy~y~fPf--l~~~~-----~- 279 (448)
T KOG1399 221 ---VHVEPPEILG-ENLWQVP--SIKSFTEDGS----VF-EKGG--PVERVDRIIFCTGYKYKFPF--LETLG-----L- 279 (448)
T ss_pred ---CCCCCCCEEE-CCEEECC--CCCCCCCCCE----EE-ECCC--EEEEEEEEEEEEEEEEECCE--ECCCC-----C-
T ss_conf ---3324555220-3307725--4334357521----89-8374--15876459995346760431--23687-----5-
Q ss_pred EEECCCC-----EEECCCCEEECCCCCCCC----CCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 6424874-----230258588304445532----4441232025555430246644
Q gi|254780675|r 308 IIVDGYG-----RTNVPGIYAIGDVAGAPM----LAHKAEHEGIICIEKIAGKSKV 354 (481)
Q Consensus 308 i~vd~~~-----qTs~p~IyA~GDv~g~~~----l~~~A~~qg~~aa~~i~~~~~~ 354 (481)
+.+++.. ..-.|..++-|.-..+.+ ..|.-..|++.++.-+.|+.+.
T Consensus 280 ~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~l 335 (448)
T KOG1399 280 GTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKL 335 (448)
T ss_pred EEECCCCCCCHHEECCCHHHCCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCCCCC
T ss_conf 06636764551001143210765532345723676324301344467644488767
No 83
>KOG2755 consensus
Probab=99.42 E-value=8.4e-13 Score=111.79 Aligned_cols=177 Identities=22% Similarity=0.341 Sum_probs=98.4
Q ss_pred CEEEEEEEEEECCCCCCCCCC-CCCCCCCCCC----CCCCCEECCCC--CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEE
Q ss_conf 638997245525754311101-1134555422----12452111333--4443215654332100023210133310000
Q gi|254780675|r 146 EGTYKAKHIIIATGARPRHIE-GIEPDSHLIW----TYFDALKPSKT--PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIE 218 (481)
Q Consensus 146 ~~~~~a~~ivIATGs~p~~~~-g~~~~~~~~~----t~~~~l~l~~~--p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~ 218 (481)
...+.+++++++||++|...- ++.+ +-+. +|+..+. .++ .|.+.|+|-|-|++|++--+ .+.+|+...
T Consensus 88 g~~~ky~klcl~tg~kPklq~E~~n~--~Iv~irDtDsaQllq-~kl~kaK~VlilgnGgia~El~yEl--k~~nv~w~i 162 (334)
T KOG2755 88 GEKLKYFKLCLCTGYKPKLQVEGINP--KIVGIRDTDSAQLLQ-CKLVKAKIVLILGNGGIAMELTYEL--KILNVTWKI 162 (334)
T ss_pred CCEEEEEEEEEECCCCCCEEECCCCC--EEEEEECCCHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHH--HCCEEEEEE
T ss_conf 86666889999538873013247785--599984371789999-9876243699980572358888874--123048996
Q ss_pred CCCCCCC-CCCCCCCCCCCHHHHHC----CCCC-------------------------CCCHHHH---------------
Q ss_conf 0000122-22222122210012201----2332-------------------------2100134---------------
Q gi|254780675|r 219 VKDRILP-VEDSEISQFVQRSLQKR----GIKI-------------------------LTESKIS--------------- 253 (481)
Q Consensus 219 ~~~~ll~-~~d~~~~~~~~~~l~~~----Gv~i-------------------------~~~~~v~--------------- 253 (481)
..+.+-. .+|+.+++.+...|+.. -|.+ +..-...
T Consensus 163 kd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~ 242 (334)
T KOG2755 163 KDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRN 242 (334)
T ss_pred CCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 25000010248248888676631356640224455344342472010576544585154310301231455322077553
Q ss_pred ---HHCCCCCCCCEEE-EECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCC-CCCEEEEECCCCEEECCCCEEECCCC
Q ss_conf ---4202234310124-403674021102322430574220000232221123-57326642487423025858830444
Q gi|254780675|r 254 ---SVKQKGDMVSVQV-ERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVK-TSNGCIIVDGYGRTNVPGIYAIGDVA 328 (481)
Q Consensus 254 ---~v~~~~~~~~v~~-~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~-~~~g~i~vd~~~qTs~p~IyA~GDv~ 328 (481)
.+....+...++. +...|.-..+.+|..++|+|..||++ ... .-.++ ++.|++.||+.|+||-|++||+||+.
T Consensus 243 ~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e-~~~-~~~lq~~edggikvdd~m~tslpdvFa~gDvc 320 (334)
T KOG2755 243 CVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSE-WAM-NKMLQITEDGGIKVDDAMETSLPDVFAAGDVC 320 (334)
T ss_pred HEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCE-EEE-CCHHHHCCCCCEEEHHHCCCCCCCEEEECCEE
T ss_conf 2123104401013100310036664363547996134576743-896-27034202458041110555565303412240
Q ss_pred C
Q ss_conf 5
Q gi|254780675|r 329 G 329 (481)
Q Consensus 329 g 329 (481)
.
T Consensus 321 t 321 (334)
T KOG2755 321 T 321 (334)
T ss_pred C
T ss_conf 3
No 84
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.4e-12 Score=110.12 Aligned_cols=37 Identities=32% Similarity=0.581 Sum_probs=34.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|. ++||+|||+|.||++||+.+++.|.+|+|++|..+
T Consensus 1 m~-~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~ 37 (589)
T PRK08641 1 MA-KKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 98-68789989869999999999875997799977788
No 85
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.41 E-value=2.2e-12 Score=108.71 Aligned_cols=37 Identities=27% Similarity=0.603 Sum_probs=33.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|+++|||+|||+|.||+.||+.+++ +++|+|++|..+
T Consensus 7 ~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~ 43 (556)
T PRK07395 7 LPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTL 43 (556)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 8865978999963999999997235-998899989999
No 86
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.41 E-value=8.4e-12 Score=104.52 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=33.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 8643489998985799999999987--993999978888
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQL--GFKVAIVEYAGL 38 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~~~ 38 (481)
+-++||+|||+|.||++||+.+++. |.+|+|++|...
T Consensus 2 t~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~ 40 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred CEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 135568999966999999999998689985999978998
No 87
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=2e-12 Score=109.12 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=33.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 64348999898579999999998799399997888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++|||+|||+|.||++||+.+++.|.+|+|+||..
T Consensus 6 ~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~ 40 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 56798999954999999999987499389997889
No 88
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=110.86 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=34.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CE
Q ss_conf 8643489998985799999999987993999978888-62
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GG 40 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-GG 40 (481)
..+|||+|||+|-||++||+.+++.|++|+||||... ||
T Consensus 32 ~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~s 71 (622)
T PTZ00139 32 DHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRS 71 (622)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 7765879999669999999999976990899978899997
No 89
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=2.1e-12 Score=108.84 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=33.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 643489998985799999999987993999978888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
++|||+|||+|.||++||+.+++.|.+|+|+||...
T Consensus 11 ~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 477889999669999999999876995899978899
No 90
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.39 E-value=4.9e-12 Score=106.21 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=87.8
Q ss_pred HCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 10133310000000012222222122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 208 KSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 208 ~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
.++|..|..+-..+-=+++ -.+.+.+++.|++.|+.++.+.+|.+.+-+++.+...++ .++....+.+|.+++|+|.
T Consensus 244 ~~lg~~v~EvPtlPPSvpG--~RL~~~L~~~f~~~Gg~~~~g~~V~~~~~~~~~v~~v~t-~~~~~~~~~A~~~VLATGs 320 (419)
T TIGR03378 244 QATGLTLCELPTMPPSLLG--IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHT-RNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHHCCCEEECCCCCCCCHH--HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCCCCEEEECCEEEECCCC
T ss_conf 9889888988999998377--999999999999869789669979989987998999993-3787226505769991466
Q ss_pred EE------EEEC-----CCCCCCCCC----C-----------CCEEEEECCCCEEE-----CCCCEEECCCCCCCCCCC-
Q ss_conf 22------0000-----232221123----5-----------73266424874230-----258588304445532444-
Q gi|254780675|r 288 QG------NIEN-----IGLEKIGVK----T-----------SNGCIIVDGYGRTN-----VPGIYAIGDVAGAPMLAH- 335 (481)
Q Consensus 288 ~P------n~~~-----L~Le~~gi~----~-----------~~g~i~vd~~~qTs-----~p~IyA~GDv~g~~~l~~- 335 (481)
-= +-+. ++|+-...+ | -+-++.||++||.+ .+|+||+|-+.++..-..
T Consensus 321 F~s~GL~a~~~~i~Epif~LdV~~~~~R~~W~~~~ff~~qp~~~~GV~tD~~lrp~~~g~~~~NLya~GsvL~G~d~~~e 400 (419)
T TIGR03378 321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE 400 (419)
T ss_pred CCCCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCEEEECHHHCCCCHHHH
T ss_conf 54698853689765205699889988756602303568880133286788777835678345650672312318876773
Q ss_pred -----CCCCCHHHHHHHHC
Q ss_conf -----12320255554302
Q gi|254780675|r 336 -----KAEHEGIICIEKIA 349 (481)
Q Consensus 336 -----~A~~qg~~aa~~i~ 349 (481)
+|...|..|+++|.
T Consensus 401 gcG~GVai~Ta~~Aa~~I~ 419 (419)
T TIGR03378 401 GCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 7773399999999999649
No 91
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.38 E-value=4.4e-12 Score=106.56 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|. ..||+|||+|.||++||+.+++. ++|+|++|..+
T Consensus 1 m~-~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~ 36 (510)
T PRK08071 1 MP-SADVIIIGSGIAALRVAKEICHE-KNVIIITKKTK 36 (510)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCC
T ss_conf 99-79999999659999999983658-98799979899
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.38 E-value=1.5e-11 Score=102.61 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=89.3
Q ss_pred HCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 10133310000000012222222122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 208 KSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 208 ~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
.++|..|.-+-..+-=+++ -.+.+.+.+.|++.|+.++.+.+|.+.+-.++.+...++ .++...++.+|.+++|+|.
T Consensus 243 ~~lg~~v~EvpTlPPSv~G--~RL~~aL~~~~~~~Gg~~~~g~~V~~~~~~~~~v~~v~t-~~~~~~~~~A~~~VLATGs 319 (425)
T PRK05329 243 EALGCPVFELPTLPPSVPG--IRLQNALRRRFERLGGVLMPGDEVLRATCEDGRVTGIWT-RNHADIPLRARHFVLATGS 319 (425)
T ss_pred HHHCCCEEECCCCCCCCHH--HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCCCCEEEECCEEEEECCC
T ss_conf 9889988988899998367--999999999999869789669988878986998999990-2788427613769990377
Q ss_pred EEE------EEC-----CCCCCCCC----CC-----------CCEEEEECCCCEEE-----CCCCEEECCCCCCCCCC--
Q ss_conf 220------000-----23222112----35-----------73266424874230-----25858830444553244--
Q gi|254780675|r 288 QGN------IEN-----IGLEKIGV----KT-----------SNGCIIVDGYGRTN-----VPGIYAIGDVAGAPMLA-- 334 (481)
Q Consensus 288 ~Pn------~~~-----L~Le~~gi----~~-----------~~g~i~vd~~~qTs-----~p~IyA~GDv~g~~~l~-- 334 (481)
-=. -+. ++|+-.-- +| -+-+|.||++||.+ .+|+||+|-+.++..-.
T Consensus 320 F~s~GL~a~~~~i~Epif~L~V~~~~~R~~W~~~~ff~~hp~~~~GV~tD~~lrP~~g~~~~~NL~aaGsvL~G~d~~~e 399 (425)
T PRK05329 320 FFSGGLVAERDGIREPIFGLDVLQTADRAEWYDGDFFAPHPFQQFGVATDDTLRPSQGGQVIENLYAAGAVLGGYDPIAE 399 (425)
T ss_pred CCCCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCCEEECHHHCCCCHHHH
T ss_conf 66698853689256104599889998856633301357782554586778777825798534551672413328876773
Q ss_pred ----CCCCCCHHHHHHHHCC
Q ss_conf ----4123202555543024
Q gi|254780675|r 335 ----HKAEHEGIICIEKIAG 350 (481)
Q Consensus 335 ----~~A~~qg~~aa~~i~~ 350 (481)
=+|...|..|+++|.-
T Consensus 400 ~~G~GVAi~Ta~~Aa~~i~~ 419 (425)
T PRK05329 400 GCGSGVAVATALHAAEQIAA 419 (425)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 77742889999999999998
No 93
>KOG3851 consensus
Probab=99.38 E-value=1.5e-12 Score=109.89 Aligned_cols=216 Identities=16% Similarity=0.227 Sum_probs=120.6
Q ss_pred CCEEEEEEEEEECCCCCC--CCCCCCCCCC--CCCCCC----------CCCEEC------CCCCCCCC-CCCCCCCCCCC
Q ss_conf 863899724552575431--1101113455--542212----------452111------33344432-15654332100
Q gi|254780675|r 145 GEGTYKAKHIIIATGARP--RHIEGIEPDS--HLIWTY----------FDALKP------SKTPKSLI-VMGSGAIGVEF 203 (481)
Q Consensus 145 ~~~~~~a~~ivIATGs~p--~~~~g~~~~~--~~~~t~----------~~~l~l------~~~p~~iv-IiGgG~ig~E~ 203 (481)
+.++|++|++|||+|-.- -.++|+.+.- ..+.+. ..+.+. -.+|...+ .-|+---.|-+
T Consensus 128 gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yi 207 (446)
T KOG3851 128 GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYI 207 (446)
T ss_pred CCCEEEEEEEEEEEECEECCCHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99677665676654024440200375766259983554686789999999972357865783499864117885331123
Q ss_pred H-HHHHCCCC--CCCCEECCCCCCCCC-CCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECC
Q ss_conf 0-23210133--310000000012222-2221222100122012332210013442022343101244036740211023
Q gi|254780675|r 204 S-SFYKSLDV--DVSLIEVKDRILPVE-DSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAE 279 (481)
Q Consensus 204 A-~~l~~lG~--~Vtli~~~~~ll~~~-d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D 279 (481)
+ .+|++.|. ++.+|...+ +-..| =+..++.+++..+++.|++.+...+.+|..++.....+.-++.|.+++++++
T Consensus 208 se~y~Rk~gvRd~a~iiy~Ts-l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~ys 286 (446)
T KOG3851 208 SESYFRKRGVRDNANIIYNTS-LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYS 286 (446)
T ss_pred HHHHHHHHCCCCCCCEEEECC-CCCEECHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHCCCCCCEEEEEEE
T ss_conf 599998727555652798517-6501037889999999987545376301235898536414388754799851477560
Q ss_pred CEEECCC-CEEEEECCCCCCCCCCCCCEEEEEC-CCCEE-ECCCCEEECCCCCCCCCC--CCCCCCHHHHHHHHC----C
Q ss_conf 2243057-4220000232221123573266424-87423-025858830444553244--412320255554302----4
Q gi|254780675|r 280 KLLLSAG-VQGNIENIGLEKIGVKTSNGCIIVD-GYGRT-NVPGIYAIGDVAGAPMLA--HKAEHEGIICIEKIA----G 350 (481)
Q Consensus 280 ~vl~a~G-r~Pn~~~L~Le~~gi~~~~g~i~vd-~~~qT-s~p~IyA~GDv~g~~~l~--~~A~~qg~~aa~~i~----~ 350 (481)
.+-+.-- +.| + -|.+..+....|++.|| .++|. ..||||++|||.+.|.-. -....|..++-+|+. |
T Consensus 287 lLHv~Ppms~p--e--~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g 362 (446)
T KOG3851 287 LLHVTPPMSTP--E--VLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQG 362 (446)
T ss_pred EEECCCCCCCH--H--HHHCCCCCCCCCCEECCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 36416998872--5--5413756575564654732320256887024123468995266788874274435659999647
Q ss_pred CCCCCCCC-CCCCEEE
Q ss_conf 66443212-2320024
Q gi|254780675|r 351 KSKVYPLD-KSKIPGC 365 (481)
Q Consensus 351 ~~~~~~~d-~~~ip~~ 365 (481)
+.+....| |.+-|-+
T Consensus 363 ~~pt~~ydGYtSCPlv 378 (446)
T KOG3851 363 KRPTMKYDGYTSCPLV 378 (446)
T ss_pred CCCCEEECCCCCCCEE
T ss_conf 9864001674457344
No 94
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.38 E-value=4.1e-12 Score=106.75 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=34.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 64348999898579999999998799399997888862
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
...||+|||+|.||+.||+.|++.|.+|+|+||..+++
T Consensus 14 ~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~ 51 (533)
T PRK07804 14 DAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTA 51 (533)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 22688999964999999999986799889997889999
No 95
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=4e-12 Score=106.86 Aligned_cols=34 Identities=47% Similarity=0.628 Sum_probs=30.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 43489998985799999999987993999978888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
.+||+|||+|.||+.||+.|++.| +|+|++|...
T Consensus 7 ~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~ 40 (539)
T PRK06263 7 ITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLF 40 (539)
T ss_pred ECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 649899995399999999998259-9799977898
No 96
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.2e-11 Score=103.34 Aligned_cols=48 Identities=40% Similarity=0.533 Sum_probs=38.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--------CEEEEEECCCCCH
Q ss_conf 43489998985799999999987993999978888--------6246325673708
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL--------GGICLNWGCIPTK 51 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~--------GGtC~~~GCiPsK 51 (481)
.+||+|||||.||..||+++++.+.+|+|+||..+ |...+|.--+|-+
T Consensus 13 d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikRSGaiAaGmdalNaav~pG~ 68 (894)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRHSGALAMGMDGVNNAVIPGK 68 (894)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 77879988972688999997606995899854566652057653457875137787
No 97
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1.9e-12 Score=109.17 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=32.2
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 986-43489998985799999999987993999978888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|.+ +|||+|||+|.||++||+.+++ +.+|+||+|...
T Consensus 1 ~~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYP 38 (583)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 97431788999962999999997156-997799978899
No 98
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=3.2e-11 Score=100.28 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=31.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 43489998985799999999987---993999978888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQL---GFKVAIVEYAGL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~---G~~V~liEk~~~ 38 (481)
+|||+|||+|.||++||+.|++. |++|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~ 42 (582)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQA 42 (582)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 70689999739999999999985389986999979899
No 99
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1.6e-11 Score=102.55 Aligned_cols=38 Identities=37% Similarity=0.592 Sum_probs=34.2
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 986-43489998985799999999987993999978888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|.+ +|||+|||+|.||++||+.+++.|.+|+||||..+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~ 39 (566)
T PRK06452 1 MEKLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFP 39 (566)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 966870789999749999999999877997899978899
No 100
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.34 E-value=4.4e-11 Score=99.27 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=29.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 43489998985799999999987993999978888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
.+||+|||+|.||++||+.+++. +|+|++|..+
T Consensus 9 ~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~ 41 (507)
T PRK07512 9 TGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPL 41 (507)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 69989999669999999983307--8399990588
No 101
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.32 E-value=5.6e-11 Score=98.51 Aligned_cols=36 Identities=47% Similarity=0.586 Sum_probs=33.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 4348999898579999999998--79939999788886
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQ--LGFKVAIVEYAGLG 39 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~--~G~~V~liEk~~~G 39 (481)
++||+|||+|-||+.||+.|++ .|++|+||+|..++
T Consensus 11 ~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~ 48 (610)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANID 48 (610)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 76999999769999999999877899979999899999
No 102
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.31 E-value=2.2e-11 Score=101.43 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=33.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|....||+|||+|.||++||+.|+ .|.+|+||+|..+
T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~ 37 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKL 37 (433)
T ss_pred CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf 986487899995699999999617-8998899978899
No 103
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.29 E-value=3.9e-11 Score=99.66 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 986-43489998985799999999987993999978888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|.. .|||+|||+|.||++||+.+++.|.+|+|++|...
T Consensus 1 m~~i~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~ 39 (657)
T PRK08626 1 MKIIYTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPA 39 (657)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 973751689999659999999999975995799968889
No 104
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=1.7e-11 Score=102.33 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC
Q ss_conf 434899989857999999999879--93999978888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~ 38 (481)
+|||+|||+|.||++||+++++.| .+|+|+||...
T Consensus 3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHP 39 (575)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 0898999965999999999998789982999978899
No 105
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.26 E-value=5.4e-11 Score=98.63 Aligned_cols=133 Identities=23% Similarity=0.349 Sum_probs=71.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC--------CCCC--C-
Q ss_conf 4899989857999999999879939999-78888624632567370889999999999984211--------7821--3-
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIV-EYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQH--------YGLN--V- 73 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~li-Ek~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~--------~g~~--~- 73 (481)
||+|||||+||..||..++++|.+|+|| .+ ..+|-.--|-||.--+..+++.+.++.... .+++ +
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~---~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~L 77 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHN---TDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRML 77 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9799998789999999998689968999734---2431588656556875304399999872589999999975456530
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf --4875449999999999999985344687630-1414210000011222--2100236875200135555432258638
Q gi|254780675|r 74 --AGKVEFNIEDIVKRSRDISHRLNRGVEFLMH-KNKVDIIWGKATLKNP--SEITVSKPSQPAVQPQHPIPKKVLGEGT 148 (481)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 148 (481)
..-+......... .+ +.....++..++ ..++++++++..-+.. ++|. .........
T Consensus 78 N~skGpAv~a~R~q~-Dr---~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~---------------GV~~~~g~~ 138 (391)
T pfam01134 78 NTSKGPAVRALRAQV-DR---DLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVK---------------GVVTEDGEE 138 (391)
T ss_pred CCCCCCCCCCCHHHH-HH---HHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEE---------------EEEECCCCE
T ss_conf 446787666858998-79---99999999999759993999546400302699599---------------999379978
Q ss_pred EEEEEEEECCCC
Q ss_conf 997245525754
Q gi|254780675|r 149 YKAKHIIIATGA 160 (481)
Q Consensus 149 ~~a~~ivIATGs 160 (481)
+.++.+|||||+
T Consensus 139 i~a~~vIltTGT 150 (391)
T pfam01134 139 YKAKAVVIATGT 150 (391)
T ss_pred EECCEEEEECCC
T ss_conf 514459993156
No 106
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.26 E-value=4e-11 Score=99.58 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3489998985799999999987993999978888
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
.||+|||+|.||++||+.+++.|.+|+|++|...
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~ 35 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSK 35 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8799989769999999999974996999958999
No 107
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.25 E-value=2.3e-10 Score=94.08 Aligned_cols=139 Identities=25% Similarity=0.340 Sum_probs=71.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-C--------CEEEEEECCCCCHHHHHH----HHHHHH-H-------
Q ss_conf 348999898579999999998799399997888-8--------624632567370889999----999999-9-------
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-L--------GGICLNWGCIPTKSLLRS----AEILDH-I------- 63 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~--------GGtC~~~GCiPsK~l~~~----a~~~~~-~------- 63 (481)
|||+||||||||+.||+.|++.|++|+|+||.. + ||-|=-.=|.+.+.++.. .+++.. +
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d 80 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD 80 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf 97999996699999999998689959999589987501588268961407899979998625775799999998489999
Q ss_pred --HHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --8421178213487544-9999999999999985344687630141421000001122221002368752001355554
Q gi|254780675|r 64 --QNAQHYGLNVAGKVEF-NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIP 140 (481)
Q Consensus 64 --~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~ 140 (481)
.=....|+.......- -+|. -.+..++++ .....+++.+|++..++... .+...+ ....
T Consensus 81 ~~~ff~~~Gl~~~~e~~GrvfP~-s~~A~~Vl~----~L~~~l~~~gV~i~~~~~V~------~I~~~~-------~~~~ 142 (405)
T pfam03486 81 FIAWFEELGVPLKEEDHGRLFPV-SDKASDIVD----ALLNELKELGVKIRTRTRVL------SVEKDD-------DGRF 142 (405)
T ss_pred HHHHHHHCCCEEEECCCCEEECC-CCCHHHHHH----HHHHHHHHCCCEEEECCEEE------EEEECC-------CCEE
T ss_conf 99999977990597789979789-898699999----99999997797899588878------999759-------9459
Q ss_pred CCCCCCEEEEEEEEEECCCCC
Q ss_conf 322586389972455257543
Q gi|254780675|r 141 KKVLGEGTYKAKHIIIATGAR 161 (481)
Q Consensus 141 ~~~~~~~~~~a~~ivIATGs~ 161 (481)
.......+++++++|||||+.
T Consensus 143 ~v~~~~~~~~a~~vIlAtGG~ 163 (405)
T pfam03486 143 RVDTGGEELEADSLVLATGGL 163 (405)
T ss_pred EEEECCCEEEECEEEEECCCC
T ss_conf 999489589727899904886
No 108
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.25 E-value=1.3e-09 Score=88.68 Aligned_cols=38 Identities=39% Similarity=0.683 Sum_probs=32.9
Q ss_pred CCCCC---CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 98643---4899989857999999999879939999788886
Q gi|254780675|r 1 MSRLY---DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG 39 (481)
Q Consensus 1 Ms~~y---DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G 39 (481)
|...+ ||+|||+|-||+++|+.+++. .+|+|+-|..++
T Consensus 1 m~~~~~~~dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 1 MNTDFEHPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCC
T ss_conf 96436788589988759999999737777-847999577788
No 109
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.24 E-value=8.4e-11 Score=97.25 Aligned_cols=44 Identities=41% Similarity=0.641 Sum_probs=38.6
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 986-434899989857999999999879939999788-88624632
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
|.. +|||||||+|.||++||+.|++.|++|+|+||. .+||+...
T Consensus 1 ~~tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 46 (567)
T PRK12842 1 MNELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAF 46 (567)
T ss_pred CCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 9873059699896889999999999879908999779988856798
No 110
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=1e-10 Score=96.62 Aligned_cols=34 Identities=41% Similarity=0.741 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6434899989857999999999879939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
++|||+|||+|-||++||+.+++.|.+|+|+++.
T Consensus 32 ~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~ 65 (638)
T PRK07573 32 RKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQ 65 (638)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6488899996699999999999749956999922
No 111
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.19 E-value=2.7e-11 Score=100.89 Aligned_cols=35 Identities=43% Similarity=0.772 Sum_probs=32.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 64348999898579999999998799399997888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
+.|||+||||||||+.||..+++.|.+|+|||+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~ 36 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP 36 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 74218998887889999998864698799980586
No 112
>KOG1800 consensus
Probab=99.19 E-value=1.1e-09 Score=89.09 Aligned_cols=279 Identities=18% Similarity=0.308 Sum_probs=141.2
Q ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 48999898579999999998--799399997888-862463256737088999999999998421178213487544999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQ--LGFKVAIVEYAG-LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~--~G~~V~liEk~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
-|+|||+||||+.+|..+-+ -+.+|.|+||.+ .+|- +.+|--| ..++
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAP-------------------------DHpE---- 71 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAP-------------------------DHPE---- 71 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCE-EEECCCC-------------------------CCCC----
T ss_conf 599988883688999999725899706754157766533-6633478-------------------------9821----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-
Q ss_conf 9999999999985344687630141421000001122221002368752001355554322586389972455257543-
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR- 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~- 161 (481)
++++++...+ .++..... |.. .|.|-.. .. ..+-+-.++.+|+|+|+.
T Consensus 72 -----vKnvintFt~----~aE~~rfs-------f~g--Nv~vG~d-vs------------l~eL~~~ydavvLaYGa~~ 120 (468)
T KOG1800 72 -----VKNVINTFTK----TAEHERFS-------FFG--NVKVGRD-VS------------LKELTDNYDAVVLAYGADG 120 (468)
T ss_pred -----HHHHHHHHHH----HHHCCCEE-------EEE--CCEECCC-CC------------HHHHHHCCCEEEEEECCCC
T ss_conf -----0147888888----75135448-------980--3010463-10------------8998621667999715888
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEC------------CCCCCCCCCCCCCCCCCCCHHHHH---------------CCC---
Q ss_conf 11101113455542212452111------------333444321565433210002321---------------013---
Q gi|254780675|r 162 PRHIEGIEPDSHLIWTYFDALKP------------SKTPKSLIVMGSGAIGVEFSSFYK---------------SLD--- 211 (481)
Q Consensus 162 p~~~~g~~~~~~~~~t~~~~l~l------------~~~p~~ivIiGgG~ig~E~A~~l~---------------~lG--- 211 (481)
++.+.-...+...+++.+.+..+ +--.++++|||-|.+++..|-+|- +|.
T Consensus 121 dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~ 200 (468)
T KOG1800 121 DRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLK 200 (468)
T ss_pred CCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 74068987434561226665411058873122575655543799746820122245550786320023678578875530
Q ss_pred ----CCCCCEECCCCC--------------CCCC----CC-CC-------------------CCCCCHHHHH--------
Q ss_conf ----331000000001--------------2222----22-21-------------------2221001220--------
Q gi|254780675|r 212 ----VDVSLIEVKDRI--------------LPVE----DS-EI-------------------SQFVQRSLQK-------- 241 (481)
Q Consensus 212 ----~~Vtli~~~~~l--------------l~~~----d~-~~-------------------~~~~~~~l~~-------- 241 (481)
.+|+|+-|++-+ +|.. |+ ++ -+.+.+.+.+
T Consensus 201 ~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~ 280 (468)
T KOG1800 201 RSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEE 280 (468)
T ss_pred CCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 37753489984157420002489899986788865445722015503775446544740678999999988643203643
Q ss_pred ----CCCCCCCCHHHHHHCCCCCC---CCEEEE-------ECCCCEEEEECCCEEECCCCE--EEEECCCCCCCCCCCCC
Q ss_conf ----12332210013442022343---101244-------036740211023224305742--20000232221123573
Q gi|254780675|r 242 ----RGIKILTESKISSVKQKGDM---VSVQVE-------RKDGSVSSMQAEKLLLSAGVQ--GNIENIGLEKIGVKTSN 305 (481)
Q Consensus 242 ----~Gv~i~~~~~v~~v~~~~~~---~~v~~~-------~~dG~~~~i~~D~vl~a~Gr~--Pn~~~L~Le~~gi~~~~ 305 (481)
....+.+...+.+|.+..++ +.+..+ ...|+.++++|+.++.++|.. |-..+++.+. +
T Consensus 281 ~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~gipFd~------~ 354 (468)
T KOG1800 281 AGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDSGIPFDD------K 354 (468)
T ss_pred CCCCCHHHHHHHCCHHHHCCCCCCCCCEEEEEEEEHHHCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCC------C
T ss_conf 6764145788752988763686653541787543101014566752762132367630000244689989664------4
Q ss_pred EEEEECCCCEEE----CCCCEEECCCCCCCC-CCCCCCCCHHHHHHHHCCC
Q ss_conf 266424874230----258588304445532-4441232025555430246
Q gi|254780675|r 306 GCIIVDGYGRTN----VPGIYAIGDVAGAPM-LAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 306 g~i~vd~~~qTs----~p~IyA~GDv~g~~~-l~~~A~~qg~~aa~~i~~~ 351 (481)
.+++-|...+.. .|++|++|=|..+|. ..-.+++++.-+++.|.-.
T Consensus 355 kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800 355 KGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 474668785688521477447874222488634400256689999999999
No 113
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.17 E-value=1.6e-10 Score=95.22 Aligned_cols=42 Identities=43% Similarity=0.577 Sum_probs=37.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 6434899989857999999999879939999788-88624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
.+|||||||+|.||++||+.+++.|++|+||||. .+||+...
T Consensus 9 ~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 51 (579)
T PRK06134 9 LECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAW 51 (579)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 7718699896789999999999879948999799988736777
No 114
>PRK12839 hypothetical protein; Provisional
Probab=99.16 E-value=1.7e-10 Score=95.12 Aligned_cols=45 Identities=47% Similarity=0.576 Sum_probs=40.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEE
Q ss_conf 986434899989857999999999879939999788-886246325
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNW 45 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~ 45 (481)
|.++|||||||+|.||++||++|++.|++|+||||. .+||+...-
T Consensus 6 ~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s 51 (574)
T PRK12839 6 MKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWS 51 (574)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 1771578998968999999999998899289996899998435562
No 115
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=1.6e-10 Score=95.20 Aligned_cols=44 Identities=43% Similarity=0.710 Sum_probs=39.0
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 9864-34899989857999999999879939999788-88624632
Q gi|254780675|r 1 MSRL-YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 1 Ms~~-yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
|+++ |||||||+|.||++||+.|++.|++|+||||. .+||+..+
T Consensus 1 ~~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~ 46 (560)
T PRK07843 1 MTGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 46 (560)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 9986657899896789999999999889988999699997707777
No 116
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.09 E-value=3.2e-10 Score=93.00 Aligned_cols=42 Identities=45% Similarity=0.585 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 6434899989857999999999879939999788-88624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
.+|||||||+|.||++||+++++.|+||+||||. .+||+...
T Consensus 13 ~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 55 (576)
T PRK12843 13 ADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTAT 55 (576)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 8828699896889999999999889948999797999815666
No 117
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.08 E-value=2.3e-10 Score=94.03 Aligned_cols=42 Identities=38% Similarity=0.563 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 6434899989857999999999879939999788-88624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
.+|||||||+|.||++||++|++.|++|+||||. .+||+...
T Consensus 5 ~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~ 47 (552)
T PRK12844 5 VTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAM 47 (552)
T ss_pred CEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 7209799896789999999999889968999889996664798
No 118
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=3.9e-09 Score=85.15 Aligned_cols=42 Identities=36% Similarity=0.577 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 6434899989857999999999879939999788-88624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
+++||||||+|.||++||+.|++.|++|+||||. .+||+...
T Consensus 10 ~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 52 (584)
T PRK12835 10 RTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL 52 (584)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 7538799896789999999999889958999699998717787
No 119
>PRK10015 hypothetical protein; Provisional
Probab=99.06 E-value=1.3e-10 Score=95.96 Aligned_cols=38 Identities=39% Similarity=0.601 Sum_probs=35.3
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9864-3489998985799999999987993999978888
Q gi|254780675|r 1 MSRL-YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~-yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|+++ |||+||||||||.+||+++++.|++|+|+||+..
T Consensus 1 m~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~ 39 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 997615889999688999999999877991999967887
No 120
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=1e-09 Score=89.37 Aligned_cols=43 Identities=37% Similarity=0.638 Sum_probs=37.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEE
Q ss_conf 9864348999898579999999998799399997888-862463
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGICL 43 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC~ 43 (481)
+.++|||||||+|.||+.||++|++.|++|+||||.. +||+..
T Consensus 57 ~~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~ 100 (506)
T PRK06481 57 LKDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTM 100 (506)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 26984679989889999999999988997899968999995188
No 121
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=9.6e-10 Score=89.58 Aligned_cols=41 Identities=39% Similarity=0.635 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 6434899989857999999999879939999788-88624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
++|||||||+| ||++||+++++.|++|+|+||. .+||+...
T Consensus 15 ~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~~ 56 (566)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (566)
T ss_pred CEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 55497998846-9999999999889938999689999857787
No 122
>PRK07121 hypothetical protein; Validated
Probab=99.01 E-value=2e-09 Score=87.32 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=37.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 86434899989857999999999879939999788-88624632
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
.++|||||||+|.||++||+.|++.|+||+|+||. .+||+...
T Consensus 18 d~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 61 (491)
T PRK07121 18 DDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATAL 61 (491)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 68769899896799999999999889928999548999950888
No 123
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=99.00 E-value=1.2e-09 Score=88.85 Aligned_cols=36 Identities=39% Similarity=0.741 Sum_probs=33.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 348999898579999999998799399997888862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
|||||||+||||-+||++|++.|++|+|+||..+.+
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r 36 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPR 36 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCC
T ss_conf 938998277468999999995697388985045079
No 124
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.98 E-value=8.1e-09 Score=82.85 Aligned_cols=278 Identities=13% Similarity=0.204 Sum_probs=131.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 64348999898579999999998-799399997888-8624632567370889999999999984211782134875449
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQ-LGFKVAIVEYAG-LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~-~G~~V~liEk~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
+.|-|+|||+||||+.||.++-+ .+.+|-|+||-+ .-| .-+||+. +..
T Consensus 38 rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfG-------------------------LVRyGVA-PDH---- 87 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG-------------------------LIRYGVA-PDH---- 87 (506)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC-------------------------CCCCCCC-CCC----
T ss_conf 7657999888838999999996389977988826898874-------------------------1110468-898----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
+++ +++.+ .++..+...++.++ |. |++-.+- .. .+-.-.++.||+|+|+
T Consensus 88 -pev----Knv~~----~f~~~a~~p~~rF~-GN--------V~vG~Di-tl------------~eL~~~YdAVVlA~GA 136 (506)
T PTZ00188 88 -IHV----KNTYR----TFDLVFSSPNYRFF-GN--------VHVGVDL-KM------------EELRRHYNCVIFCCGA 136 (506)
T ss_pred -HHH----HHHHH----HHHHHHCCCCEEEE-EC--------EEECCCC-CH------------HHHHHHCCEEEEECCC
T ss_conf -566----06899----99999658975999-47--------3348988-99------------9998638999994797
Q ss_pred CCCCCC---------CCCCCC-----CCCCCCCCCEECC-----------------C--CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 311101---------113455-----5422124521113-----------------3--344432156543321000232
Q gi|254780675|r 161 RPRHIE---------GIEPDS-----HLIWTYFDALKPS-----------------K--TPKSLIVMGSGAIGVEFSSFY 207 (481)
Q Consensus 161 ~p~~~~---------g~~~~~-----~~~~t~~~~l~l~-----------------~--~p~~ivIiGgG~ig~E~A~~l 207 (481)
+-..++ +++... ..+++..++..|. . .-++++|||.|.+|+..|-+|
T Consensus 137 s~~~~~~~~~~~~~~~~~ge~lp~~~~Gv~sA~eFV~WYNGhp~d~~~~~~~~~l~~~~~~~~avVIGnGNVALDVARIL 216 (506)
T PTZ00188 137 SEVSIPIGQQDEDKAVSGGETNPRKQNGLFHARDLIYFYNNMYNDVRCRAVENYLKSFENFTTCIIIGNGNVSLDIARIL 216 (506)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 85555677652002588622145545772847771102039996312343322233324575479978873588878773
Q ss_pred HC-----------------C-C---CCCCCEECCCCC--------------CCCC----CC---CC----------CC--
Q ss_conf 10-----------------1-3---331000000001--------------2222----22---21----------22--
Q gi|254780675|r 208 KS-----------------L-D---VDVSLIEVKDRI--------------LPVE----DS---EI----------SQ-- 233 (481)
Q Consensus 208 ~~-----------------l-G---~~Vtli~~~~~l--------------l~~~----d~---~~----------~~-- 233 (481)
.+ | . .+|+|+-|+.-+ |+.. |+ ++ .+
T Consensus 217 l~~~deL~~TDI~~~AL~~L~~S~Vk~V~ivGRRGp~qaaFT~kELREL~~L~~~~vvv~p~d~dl~~~~~~~~~~~~~~ 296 (506)
T PTZ00188 217 VKSPNHLSKTDISSDYLKVMKQHKIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEANTNMK 296 (506)
T ss_pred CCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHCHHH
T ss_conf 58977843578719999999868984799984358776066879999874689953885756514333333300102367
Q ss_pred -C----CCHHHH------H--------CCCCCCCCHHHHHHCCCCC-CCCEEEEE---------CCCCEEEEECCCEEEC
Q ss_conf -2----100122------0--------1233221001344202234-31012440---------3674021102322430
Q gi|254780675|r 234 -F----VQRSLQ------K--------RGIKILTESKISSVKQKGD-MVSVQVER---------KDGSVSSMQAEKLLLS 284 (481)
Q Consensus 234 -~----~~~~l~------~--------~Gv~i~~~~~v~~v~~~~~-~~~v~~~~---------~dG~~~~i~~D~vl~a 284 (481)
. +.+.++ + .-+++++...+.++...++ ...+.+.. ..++.+++++|.|+-+
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~~i~~~~g~v~~~~l~~n~~~~~~~~~~~e~e~i~~~LVirS 376 (506)
T PTZ00188 297 KRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNRNVPMSFSSFKENKVLVTPLVIFA 376 (506)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEEEC
T ss_conf 78999999987405540358554566305899843786125157994568997734654677777551389877989979
Q ss_pred CCCEEEEECCCCCCCCCCCC-CEEEEECCCCEEECCCCEEECCCCCCCC--CCCCCCCCHHHHHHHHC
Q ss_conf 57422000023222112357-3266424874230258588304445532--44412320255554302
Q gi|254780675|r 285 AGVQGNIENIGLEKIGVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPM--LAHKAEHEGIICIEKIA 349 (481)
Q Consensus 285 ~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~qTs~p~IyA~GDv~g~~~--l~~~A~~qg~~aa~~i~ 349 (481)
+|.+.. . +. +.-.+ ++.+..|+..+ ..+++|++|=+-.+|- +.+ -+..+.-.++.++
T Consensus 377 IGYrg~--~--~~--~~~~~~~~~~~~~~~g~-~~~glY~aGWiKRGP~GVIgT-tm~da~~ta~~vl 436 (506)
T PTZ00188 377 TGFKKS--N--FA--ENLYNQSVQMFREDIGQ-HKFAIFKAGWFDKGPKGNIAS-QILNSKNSTHLVL 436 (506)
T ss_pred CCCCCC--C--CC--CCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCCCEEECC-CCCCHHHHHHHHH
T ss_conf 376889--9--89--88888777766788888-678728657456388520027-8677899999999
No 125
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.96 E-value=7.8e-09 Score=82.97 Aligned_cols=77 Identities=16% Similarity=0.353 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC-CCCEEEEECCCEEECCCCEEEEECCCCCCCCCC----CC
Q ss_conf 2122210012201233221001344202234310124403-674021102322430574220000232221123----57
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK-DGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVK----TS 304 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~-dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~----~~ 304 (481)
.+.+.+.+.+++.|++|+++++|+.++.+++.+.+..... .++..++.+|.|++|+|-- +..| ++.+|++ ..
T Consensus 198 ~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGaw--S~~L-~~~lG~~~Pl~p~ 274 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVG--SRQL-AAMLGDRVNVYPV 274 (410)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCC--CHHH-HHHCCCCCCEEEC
T ss_conf 999999999997799998785589999809989999646423355258830499876666--3766-8653886523642
Q ss_pred CEEEE
Q ss_conf 32664
Q gi|254780675|r 305 NGCII 309 (481)
Q Consensus 305 ~g~i~ 309 (481)
+|+..
T Consensus 275 rGy~l 279 (410)
T PRK12409 275 KGYSI 279 (410)
T ss_pred CCEEE
T ss_conf 67589
No 126
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.94 E-value=4.5e-09 Score=84.71 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=38.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEE
Q ss_conf 986434899989857999999999879939999788---88624632
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA---GLGGICLN 44 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~---~~GGtC~~ 44 (481)
|.+.+||||||+|.||++||+.+++.|+||+|+||. .+||+...
T Consensus 1 ~~~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~ 47 (456)
T PRK08274 1 MAAMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRH 47 (456)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
T ss_conf 99738889999889999999999987990999983277788803055
No 127
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.91 E-value=5.8e-09 Score=83.91 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 2122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
.+...+.+.+++.|++++++++|++++.+++.+.|. ..+| ++.+|.|++|+|-
T Consensus 148 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~--t~~g---~i~a~~VV~a~G~ 200 (309)
T pfam01266 148 RLLRALARAAEALGVEILEGTEVTGLEREGGGVTVE--TADG---EIRADKVVNAAGA 200 (309)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEE--ECCC---EECCCEEEECCCH
T ss_conf 436799999987796999176899999989999999--8997---0858999997774
No 128
>PRK06184 hypothetical protein; Provisional
Probab=98.90 E-value=4.1e-09 Score=84.98 Aligned_cols=37 Identities=30% Similarity=0.612 Sum_probs=34.1
Q ss_pred CCC--CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986--4348999898579999999998799399997888
Q gi|254780675|r 1 MSR--LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~--~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|++ .+||+||||||+|+++|..|+++|.+|+||||..
T Consensus 1 m~~~~tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~ 39 (503)
T PRK06184 1 MTEYTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSP 39 (503)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 998885798999909999999999997799899994899
No 129
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.89 E-value=6.8e-09 Score=83.39 Aligned_cols=42 Identities=36% Similarity=0.518 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEE
Q ss_conf 6434899989857999999999879939999788-886246325
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNW 45 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~ 45 (481)
++|||||||+| ||++||+.+++.|++|+|+||. .+||+....
T Consensus 8 ~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~s 50 (515)
T PRK12837 8 EEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYS 50 (515)
T ss_pred CCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHC
T ss_conf 87397998906-99999999998799889997889888188745
No 130
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=98.88 E-value=1.8e-08 Score=80.31 Aligned_cols=36 Identities=39% Similarity=0.658 Sum_probs=33.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC-CCEE
Q ss_conf 4899989857999999999879-9399997888-8624
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG-FKVAIVEYAG-LGGI 41 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G-~~V~liEk~~-~GGt 41 (481)
||||||+|.||++||+.|.+.| .+|+|+||-+ +||.
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGN 38 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGN 38 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 96898427688999999986468763787057523226
No 131
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.88 E-value=3.8e-08 Score=77.93 Aligned_cols=39 Identities=49% Similarity=0.733 Sum_probs=34.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEE
Q ss_conf 4899989857999999999879939999788-88624632
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLN 44 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~ 44 (481)
||||||+|.||++||++|++.|+||+|+||. .+||++..
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~ 40 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAW 40 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 9899988699999999999789948999789999976888
No 132
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.88 E-value=1.5e-08 Score=80.87 Aligned_cols=38 Identities=39% Similarity=0.692 Sum_probs=34.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 6434899989857999999999879939999788-8862
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
.+|||+||||||||.+||++|++.|.+|+|+||. .+|-
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA 40 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 478899989788999999999857992999965788999
No 133
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.87 E-value=2.6e-08 Score=79.11 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCCCEE-ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCC-
Q ss_conf 487423-025858830444553244412320255554302466443212232002454303340001496876107972-
Q gi|254780675|r 311 DGYGRT-NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLD- 388 (481)
Q Consensus 311 d~~~qT-s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~- 388 (481)
+.+|+| .++|+|-+|-++|--.. -.|..||.+|+-|.+......+ |. ++ +=.=|++|.--+.+.-.|.+
T Consensus 353 ~~tLEtK~i~gLf~AGQINGTTGY-EEAAaQGliAGINAa~~~~~~~------p~-il-~R~eaYIGVlIDDLvtkGv~E 423 (621)
T PRK05192 353 KPTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINAALKVQGKE------PF-IL-KRSEAYIGVLIDDLVTKGTKE 423 (621)
T ss_pred HHHHCCCCCCCEEECCCCCCCCHH-HHHHHCCHHHHHHHHHHHCCCC------CC-CC-CCCCCHHHHHHHHHHHCCCCC
T ss_conf 335331655987777766775078-9988546798999999965999------87-64-603112444156676079996
Q ss_pred -EEEE
Q ss_conf -7999
Q gi|254780675|r 389 -IRVG 392 (481)
Q Consensus 389 -~~~~ 392 (481)
|+..
T Consensus 424 PYRMF 428 (621)
T PRK05192 424 PYRMF 428 (621)
T ss_pred CCCCC
T ss_conf 41033
No 134
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.85 E-value=1.1e-08 Score=81.81 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
+...+.+..++.|++|++++.|++++.+++++.|+ +.+| ++.+|.|++|+|-
T Consensus 151 ~~~al~~~a~~~G~~i~~~~~V~~i~~~~~~v~V~--T~~G---~i~A~~VV~AaGa 202 (377)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEHDDDGVTVT--TADG---TYSAKKLVVSAGT 202 (377)
T ss_pred HHHHHHHHHHHCCCCEEECEEEEEEEECCCEEEEE--ECCC---EEECCEEEECCCH
T ss_conf 99999999997499658134888678749989998--0894---7997979997565
No 135
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.84 E-value=9.2e-09 Score=82.43 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 64348999898579999999998799399997888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.+|||+||||||+|+++|..|++.|.+|+||||..
T Consensus 11 ~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~ 45 (554)
T PRK06183 11 HDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWP 45 (554)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98888999959899999999997799999991899
No 136
>PRK06834 hypothetical protein; Provisional
Probab=98.83 E-value=1.3e-08 Score=81.34 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=33.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+ +|||+|||+||+|+++|..|+++|.+|+||||.
T Consensus 1 M~-~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~ 35 (488)
T PRK06834 1 MT-EHAVVIAGGGPTGLMLAGELALAGVDVAIVERR 35 (488)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99-898999893889999999999769999999689
No 137
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.83 E-value=6.7e-09 Score=83.43 Aligned_cols=38 Identities=39% Similarity=0.567 Sum_probs=35.5
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9864-3489998985799999999987993999978888
Q gi|254780675|r 1 MSRL-YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~-yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
||++ |||+||||||||.+||+++|+.|++|+|+||+..
T Consensus 1 m~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~ 39 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 988757789999688999999999878990999967888
No 138
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.79 E-value=3.1e-08 Score=78.62 Aligned_cols=76 Identities=13% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC-CCCCCCCCCCCCEEEE
Q ss_conf 2221001220-1233221001344202234310124403674021102322430574220000-2322211235732664
Q gi|254780675|r 232 SQFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN-IGLEKIGVKTSNGCII 309 (481)
Q Consensus 232 ~~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~-L~Le~~gi~~~~g~i~ 309 (481)
.+.+.+.+++ .+|+++.+++++.++.+++.+.+++ .+| +++++|+|+.|=|..-.+.. +|+...+..+....+.
T Consensus 115 ~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l--~~g--~~i~a~lvIgADG~~S~vR~~~gi~~~~~~y~q~alv 190 (391)
T PRK08020 115 QQALWQALEAHPNVTLRVPASLIALHRHDDGWELEL--ADG--ETIQAKLVIGADGANSQVRQMAGIGVHAWQYAQSCML 190 (391)
T ss_pred HHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEE--CCC--CEEEECEEEEECCCCCHHHHHCCCCCCCCCCCCEEEE
T ss_conf 999999998389969995880268897498689994--899--9998379999079970544522788635787624899
Q ss_pred EC
Q ss_conf 24
Q gi|254780675|r 310 VD 311 (481)
Q Consensus 310 vd 311 (481)
.+
T Consensus 191 ~~ 192 (391)
T PRK08020 191 IT 192 (391)
T ss_pred EE
T ss_conf 98
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.79 E-value=2.8e-07 Score=71.64 Aligned_cols=35 Identities=34% Similarity=0.641 Sum_probs=33.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 34899989857999999999879939999788886
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG 39 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G 39 (481)
|||+|||||-.|+++|++|++.|++|+|+|++..|
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 92999993299999999999789949999899999
No 140
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.78 E-value=1.8e-08 Score=80.31 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CC
Q ss_conf 434899989857999999999879939999788-88
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~ 38 (481)
+.||+|||+|-|||++|+.+++.+.+|+||=|. .+
T Consensus 2 ~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~ 37 (546)
T TIGR00551 2 EADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEV 37 (546)
T ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 635999752089999998533268637897587555
No 141
>PRK11728 hypothetical protein; Provisional
Probab=98.78 E-value=2.2e-08 Score=79.69 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 1222100122012332210013442022343101244036740211023224305742
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
+.+.+.+.++++|++|+++++|+.+++.++++.+.. .+| .+++++.|+.|.|--
T Consensus 151 l~~al~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~t--~~~--~~i~a~~vINaAGl~ 204 (400)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT--SQG--GEFEARTLVNCAGLM 204 (400)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEE--CCC--CEEEEEEEEECCCHH
T ss_conf 999999999978989992788989999799999998--899--889971899866652
No 142
>PRK08132 hypothetical protein; Provisional
Probab=98.76 E-value=3.4e-08 Score=78.33 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=32.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 64348999898579999999998799399997888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.+.||+|||+||+|+.+|..|+++|.+++||||..
T Consensus 22 ~~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~ 56 (549)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (549)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 86999999925799999999998799999995999
No 143
>PRK09126 hypothetical protein; Provisional
Probab=98.76 E-value=3.8e-08 Score=78.00 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|. +|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 1 Mm-~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~ 36 (392)
T PRK09126 1 MM-HSDILVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99-8999999925899999999986899899990898
No 144
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.74 E-value=7.8e-08 Score=75.71 Aligned_cols=43 Identities=35% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEEEE
Q ss_conf 8643489998985799999999987993999978888-624632
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GGICLN 44 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-GGtC~~ 44 (481)
++.|||+|||||--|..+|+.|+.+|+||+|||++.+ .||.-+
T Consensus 4 ~e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsr 47 (503)
T PRK13369 4 PEDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSR 47 (503)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 88378899996788899999999689949998268755844476
No 145
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=6.1e-07 Score=69.19 Aligned_cols=96 Identities=13% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHCCCCCCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEE--C---C-CCCCCCCC-CC--CEEEEECCCCEE------E
Q ss_conf 420223431012440-367402110232243057422000--0---2-32221123-57--326642487423------0
Q gi|254780675|r 254 SVKQKGDMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIE--N---I-GLEKIGVK-TS--NGCIIVDGYGRT------N 317 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~--~---L-~Le~~gi~-~~--~g~i~vd~~~qT------s 317 (481)
.|.+.+.+..+.+.. ....++++++|.|+.++|..+-.. . | .|.+.|+. .| ..+|.|++..+. .
T Consensus 344 ~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~ 423 (474)
T COG4529 344 SIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGER 423 (474)
T ss_pred ECCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 12433578557864044675001323289976876767776522999999867850458888760207877612788743
Q ss_pred CCCCEEECCCCCCC-C---CCCCCCCCHHHHHHHHC
Q ss_conf 25858830444553-2---44412320255554302
Q gi|254780675|r 318 VPGIYAIGDVAGAP-M---LAHKAEHEGIICIEKIA 349 (481)
Q Consensus 318 ~p~IyA~GDv~g~~-~---l~~~A~~qg~~aa~~i~ 349 (481)
.++.||+|-.+.+. . ..+.=..|+..+|..++
T Consensus 424 ~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 424 VTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CCCCEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 367514355557860664038399999999999876
No 146
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.72 E-value=1.9e-08 Score=80.11 Aligned_cols=200 Identities=14% Similarity=0.246 Sum_probs=99.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 6434899989857999999999879--93999978888624632567370889999999999984211782134875449
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
..|||+|||||--|.+.|..|++++ ++|+|+||.. ..||.-|+ ++|.+.+. |+..+ +. +
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~------~~a~~sS~---~NSgviHa-------g~~y~--p~-s 62 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED------GVAQESSS---NNSGVIHA-------GLYYT--PG-S 62 (429)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC------CCCCCCCC---CCCCCEEC-------CCCCC--CC-C
T ss_conf 8322999897389899999999738896599997057------65333456---76534425-------54489--85-5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
+..+..-..++ ....+.++.++.+ ....++++|+|-
T Consensus 63 ---lka~l~~~g~~---~~~~~~kq~~~~f--------------------------------------~~~g~l~vA~~e 98 (429)
T COG0579 63 ---LKAKLCVAGNI---NEFAICKQLGIPF--------------------------------------INCGKLSVATGE 98 (429)
T ss_pred ---HHHHHHHHHHH---HHHHHHHHHCCCC--------------------------------------CCCCEEEEEECH
T ss_conf ---13399999999---9999999849861--------------------------------------236808999782
Q ss_pred CCC-CCCCC-----CC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 311-10111-----34--55542212452111333444321565433210002321013331000000001222222212
Q gi|254780675|r 161 RPR-HIEGI-----EP--DSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEIS 232 (481)
Q Consensus 161 ~p~-~~~g~-----~~--~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~ 232 (481)
.-. .++.+ .. ......+-+++..+. | .+.-+.. |..+.. ..++++..+ +.
T Consensus 99 ~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~e--P---~l~~~~~-----aal~~p---~~giV~~~~---------~t 156 (429)
T COG0579 99 EEVERLEKLYERGKANGVFDLEILDKEEIKELE--P---LLNEGAV-----AALLVP---SGGIVDPGE---------LT 156 (429)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHC--C---CCCCCCE-----EEEECC---CCCEECHHH---------HH
T ss_conf 778999999998865798614426999998629--6---5443651-----468757---775076899---------99
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEE
Q ss_conf 221001220123322100134420223431012440367402110232243057422
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQG 289 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~P 289 (481)
..+.+.+.++|+++++|++|+.++++++++.+ ....+|+.+ ++++.|+.+.|-..
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~-~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDGVFV-LNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEEECCCEEE-EEECCCCEE-EEEEEEEECCCHHH
T ss_conf 99999999769789934836478992796599-983479678-99568998974517
No 147
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.70 E-value=2.9e-07 Score=71.50 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=34.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.++|||+||||||+|+.+|..|++.|.+|+|||+.
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQ 36 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999876899991589999999998589978999379
No 148
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.69 E-value=9e-08 Score=75.25 Aligned_cols=77 Identities=17% Similarity=0.415 Sum_probs=51.6
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC-CCCCCCCCCCCCEEEE
Q ss_conf 122210012201233221001344202234310124403674021102322430574220000-2322211235732664
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN-IGLEKIGVKTSNGCII 309 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~-L~Le~~gi~~~~g~i~ 309 (481)
+.+.+.+.+++.+|++++++++++++.+++++.+++ .+| +++++++|+.|=|..-.+.. +|++..+-..+..+++
T Consensus 113 l~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l--~~g--~~i~a~llIgaDG~~S~VR~~lgi~~~~~~y~q~~iv 188 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTL--ADG--STLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIV 188 (403)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEE--CCC--CEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 999999999828998985885789997498079997--899--8999869998348761325523987658777742899
Q ss_pred EC
Q ss_conf 24
Q gi|254780675|r 310 VD 311 (481)
Q Consensus 310 vd 311 (481)
.+
T Consensus 189 ~~ 190 (403)
T PRK07333 189 CT 190 (403)
T ss_pred EE
T ss_conf 73
No 149
>PRK08244 hypothetical protein; Provisional
Probab=98.69 E-value=1.4e-07 Score=73.80 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=31.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4348999898579999999998799399997888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++||+|||+||+|+++|..|+++|.+|+||||..
T Consensus 2 ~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~ 35 (494)
T PRK08244 2 KTDVIIIGGGPVGLMLASELALAGVRTCVIERLK 35 (494)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9899999947899999999997799999990899
No 150
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.69 E-value=1e-07 Score=74.82 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=42.0
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 22210012201233221001344202234310124403674021102322430574220000
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
.+.+.+.+.+.+|+++.++++++++.+++++.+++ .||+ ++++++++.|=|..-.+..
T Consensus 116 ~~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~--~dg~--~i~a~lvVgaDG~~S~vR~ 173 (392)
T PRK08773 116 VDRLWAAVHAAGIQLHCPARVVELEQDADGVRLRL--DDGS--RLEAALAIAADGAASTLRE 173 (392)
T ss_pred HHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEE--CCCC--EEEEEEEEECCCCCCHHHH
T ss_conf 99999998608998974868999996698589997--7997--9998899983788747677
No 151
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.68 E-value=2.1e-07 Score=72.55 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=35.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|++..+|+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~ 37 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9899849998978899999999997899999991799
No 152
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.67 E-value=3.5e-07 Score=70.97 Aligned_cols=48 Identities=29% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC--EEEEEECCCCC
Q ss_conf 643489998985799999999987--9939999788886--24632567370
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQL--GFKVAIVEYAGLG--GICLNWGCIPT 50 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~~~G--GtC~~~GCiPs 50 (481)
.+.||+|||||..|+++|++|++. |.+|+|+|++.+| -+-=|-||+.+
T Consensus 23 ~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGRNgG~~~~ 74 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT 74 (460)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 7551999994399999999999748999889994896156556654451567
No 153
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.66 E-value=9.2e-08 Score=75.19 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHCC-CCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 1222100122012-3322100134420223431012440367402110232243057422000
Q gi|254780675|r 231 ISQFVQRSLQKRG-IKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 231 ~~~~~~~~l~~~G-v~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+.+.+.+ |+++.+++++.++.+++.+.+++.. ||+ ++.+|.++-|=|..-.+.
T Consensus 106 l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~-dG~--~~~a~llVgADG~~S~vR 165 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-DGE--TLDADLLVGADGANSAVR 165 (387)
T ss_pred HHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEEC-CCE--EEECCEEEECCCCCHHHH
T ss_conf 999999998718982999577799988539737999903-991--997599998899876999
No 154
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.65 E-value=1.1e-07 Score=74.59 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=32.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 864348999898579999999998-799399997888
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQ-LGFKVAIVEYAG 37 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~-~G~~V~liEk~~ 37 (481)
..++||+||||||+|+.+|..|++ .|.++.||||..
T Consensus 30 P~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9858889999658999999998713799889992799
No 155
>PRK06126 hypothetical protein; Provisional
Probab=98.65 E-value=2.4e-07 Score=72.20 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=33.6
Q ss_pred CCC--CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986--4348999898579999999998799399997888
Q gi|254780675|r 1 MSR--LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~--~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|++ +.||+||||||+|+++|..|+++|.+|+||||..
T Consensus 2 m~~~~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~ 40 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALELGRRGVDSILVERGD 40 (545)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999888998999949899999999998799999988999
No 156
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.65 E-value=2.6e-07 Score=71.86 Aligned_cols=70 Identities=16% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC-EEEEECCCCCCCCCCC----CC
Q ss_conf 122210012201233221001344202234310124403674021102322430574-2200002322211235----73
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGNIENIGLEKIGVKT----SN 305 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn~~~L~Le~~gi~~----~~ 305 (481)
+...+.+.+++.|++|++++.|++++.+++.+. .+...+| .+++|.|++|+|- .+. | ++.+|+++ -+
T Consensus 203 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~-~V~t~~g---~i~ad~vV~AaGaws~~---l-~~~lg~~~pv~p~r 274 (416)
T PRK00711 203 FTQRLAALAEQLGVKFRFNTPVDGLLVEGGRIT-GVQTGGG---VITADAYVVALGSYSTA---L-LKPLGLDLPVYPLK 274 (416)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEE-EEECCCC---EEEEEEEEEECCHHHHH---H-HHHCCCCCCEEECC
T ss_conf 999999999853886200231589998499899-8853895---57501699933743699---9-99749976436503
Q ss_pred EEE
Q ss_conf 266
Q gi|254780675|r 306 GCI 308 (481)
Q Consensus 306 g~i 308 (481)
|+.
T Consensus 275 Gy~ 277 (416)
T PRK00711 275 GYS 277 (416)
T ss_pred CEE
T ss_conf 159
No 157
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.6e-07 Score=71.88 Aligned_cols=35 Identities=43% Similarity=0.718 Sum_probs=32.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98643489998985799999999987993999978
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY 35 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk 35 (481)
|...|||+|||||+||..||+.++++|.+++|+-.
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 99878569989984204777766436980799973
No 158
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.63 E-value=1.1e-07 Score=74.73 Aligned_cols=34 Identities=38% Similarity=0.532 Sum_probs=31.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4348999898579999999998799399997888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
+-||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~ 35 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9979998958899999999997899999991799
No 159
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.61 E-value=2.1e-08 Score=79.76 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=78.1
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC------------CCC
Q ss_conf 21222100122012332210013442022343101244036740211023224305742200002------------322
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI------------GLE 297 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L------------~Le 297 (481)
.+.+.+.+.|+..|.-+..+-+|...+-.++.+.-.++. ++....+.+|..++|+|.-= .++| +|+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr-n~~diP~~a~~~VLAsGsff-skGLvae~d~I~EPIf~ld 336 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR-NHADIPLRADFYVLASGSFF-SKGLVAERDKIYEPIFDLD 336 (421)
T ss_pred HHHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEEEC-CCCCCCCCHHHEEEECCCCC-CCCCHHHHHHHHCCHHHCC
T ss_conf 689999999997286672587213246427868898703-45657777457266136511-2530200232304002111
Q ss_pred CCCC----CC-----------CCEEEEECCCCEEE-----CCCCEEECCCCCCCCCC------CCCCCCHHHHHHHHCCC
Q ss_conf 2112----35-----------73266424874230-----25858830444553244------41232025555430246
Q gi|254780675|r 298 KIGV----KT-----------SNGCIIVDGYGRTN-----VPGIYAIGDVAGAPMLA------HKAEHEGIICIEKIAGK 351 (481)
Q Consensus 298 ~~gi----~~-----------~~g~i~vd~~~qTs-----~p~IyA~GDv~g~~~l~------~~A~~qg~~aa~~i~~~ 351 (481)
-... +| -.-++.+|+++|-+ ..|.||+|-|.|+.... -+|...+..|++.|+..
T Consensus 337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~AiGavlgGfdpi~egcGsGVai~ta~~aa~qi~~~ 416 (421)
T COG3075 337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAER 416 (421)
T ss_pred CCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 12685055420102358872677281125553713110678889998777518767884578634788999999999998
Q ss_pred C
Q ss_conf 6
Q gi|254780675|r 352 S 352 (481)
Q Consensus 352 ~ 352 (481)
.
T Consensus 417 ~ 417 (421)
T COG3075 417 A 417 (421)
T ss_pred H
T ss_conf 5
No 160
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.61 E-value=1e-07 Score=74.83 Aligned_cols=94 Identities=29% Similarity=0.446 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEECC----CCCC---CCC
Q ss_conf 212221001220123322100134420223431012440-36740211023224305742200002----3222---112
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENI----GLEK---IGV 301 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L----~Le~---~gi 301 (481)
.+.-.+.....++|-++++.++|+.+.++++...|++.+ .+|+..++.++.|+.|+| |-.+.+ +++. ..+
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG--pW~d~i~~~~~~~~~~~~~v 242 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG--PWVDEILEMAGLEQSPHIGV 242 (532)
T ss_pred HHHHHHHHHHHHCCCHHHHCCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEECCC--CCHHHHHHHHCCCCCCCCCC
T ss_conf 8999999999965301230461534554087789999715788279988377998987--01899987623467777643
Q ss_pred CCCCE-EEEECCCCEEECCCCEEEC
Q ss_conf 35732-6642487423025858830
Q gi|254780675|r 302 KTSNG-CIIVDGYGRTNVPGIYAIG 325 (481)
Q Consensus 302 ~~~~g-~i~vd~~~qTs~p~IyA~G 325 (481)
...+| .++++.++..+.+-+|-+.
T Consensus 243 r~skGsHlVv~~~~~~~~a~~~~~~ 267 (532)
T COG0578 243 RPSKGSHLVVDKKFPINQAVINRCR 267 (532)
T ss_pred EECCCEEEEECCCCCCCCEEEEECC
T ss_conf 5166038995665788754896448
No 161
>PRK07190 hypothetical protein; Provisional
Probab=98.60 E-value=9.3e-08 Score=75.14 Aligned_cols=37 Identities=30% Similarity=0.605 Sum_probs=33.9
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864-348999898579999999998799399997888
Q gi|254780675|r 1 MSRL-YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~-yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+.+ .||+|||+||.|+.+|..|++.|.+|+||||..
T Consensus 1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~ 38 (480)
T PRK07190 1 MSAQVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSD 38 (480)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99886448999938899999999988799999996999
No 162
>PRK08774 consensus
Probab=98.59 E-value=7e-08 Score=76.05 Aligned_cols=37 Identities=30% Similarity=0.546 Sum_probs=35.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|++.|||+||||||+|+++|..+++.|.+|+|||+.+
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~ 37 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATP 37 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9899878999916999999999966899789993799
No 163
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.59 E-value=7.8e-07 Score=68.43 Aligned_cols=39 Identities=38% Similarity=0.638 Sum_probs=34.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEE
Q ss_conf 434899989857999999999879939999788-886246
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGIC 42 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC 42 (481)
+-||+|+|+||+|++||.+|++.|+||+|+|+. .+||-|
T Consensus 25 e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGI 64 (257)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 0688998888279999999986896599997134688863
No 164
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.59 E-value=2.9e-07 Score=71.59 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=39.9
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 2210012201233221001344202234310124403674021102322430574220000
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.+++.++.++.++++++++.+++.+.+++ .|| +++.+++|+.|=|..-.+..
T Consensus 116 ~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l--~~g--~~i~a~llVgADG~~S~vR~ 172 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTL--ADG--RQLRAPLVVAADGANSAVRR 172 (405)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEE--CCC--CEEECCEEEECCCCCCHHHH
T ss_conf 9999999727988984878999998388079996--799--79863889995899856665
No 165
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.55 E-value=1.4e-07 Score=73.76 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 22122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
..+.+.+.+.+++.|++|+++++|++|.-+++. .+++...+| +.+++|.|+.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~-g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGK-GVGVRTSDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCC-EEEEEECCC--CEEECCEEEECCCH
T ss_conf 999999999999749399678713599971890-589980676--07514689986887
No 166
>PRK11445 putative oxidoreductase; Provisional
Probab=98.54 E-value=1.3e-07 Score=74.13 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEE-----EEEECCCCCHHHHH
Q ss_conf 4348999898579999999998799399997888-8624-----63256737088999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGI-----CLNWGCIPTKSLLR 55 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGt-----C~~~GCiPsK~l~~ 55 (481)
+|||+||||||||-+||..|++. .+|+|+||.. .+.. | -|++|.+++-.
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpC--GG~I~~~a~~~ 55 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPC--GGLLAPDAQKS 55 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCC--CCCCCHHHHHH
T ss_conf 99799989788999999998268-988999813565679998878--68719728999
No 167
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.53 E-value=1.8e-08 Score=80.37 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCC-CCCCCCHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 4443215654332100023210133310000000012-------22--2222-122210012201233221001344202
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSE-ISQFVQRSLQKRGIKILTESKISSVKQ 257 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~-~~~~~~~~l~~~Gv~i~~~~~v~~v~~ 257 (481)
.++|+|||+|+-||=.|+.|++.|-.|||.||.||+. |. +|+. +.+.=.+.|+.+||+|++|+.|=....
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWde 230 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWDE 230 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 86689975675799999998535883899743678886302488874337388999999998747842017830046534
Q ss_pred CCCCCCEEEEECCCCEEEEECCCEEECCCC-EEEEECC---CCCCCCCCC--C----CEEEEECCCC-EE-ECCCCEEEC
Q ss_conf 234310124403674021102322430574-2200002---322211235--7----3266424874-23-025858830
Q gi|254780675|r 258 KGDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGNIENI---GLEKIGVKT--S----NGCIIVDGYG-RT-NVPGIYAIG 325 (481)
Q Consensus 258 ~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn~~~L---~Le~~gi~~--~----~g~i~vd~~~-qT-s~p~IyA~G 325 (481)
+.....+.-.+-.-++..-.+|.|++|+|- .|. +| |=|--||.. + .....-|+.+ .. ..|.|-|=|
T Consensus 231 nskitnlsk~di~~~~L~~~fDAVVLa~Ga~~pR--DLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akG 308 (517)
T TIGR01317 231 NSKITNLSKKDISADELKEDFDAVVLATGATKPR--DLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKG 308 (517)
T ss_pred CCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 4420002234268799871469389833788601--03557766466037865546754856088536667887354228
Q ss_pred -------------CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCCCCEEEEEEEHHHEEECCCHHHHHCC-CCCEE
Q ss_conf -------------44455324441232025555430246644321-2232002454303340001496876107-97279
Q gi|254780675|r 326 -------------DVAGAPMLAHKAEHEGIICIEKIAGKSKVYPL-DKSKIPGCTYCNPQVASIGLTEEKARSQ-GLDIR 390 (481)
Q Consensus 326 -------------Dv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~-d~~~ip~~vft~P~ia~vG~te~ea~~~-g~~~~ 390 (481)
||.| ++.+||-....+.-=-+ .-|- .-..-||= .-|.+-++=+..+|+++. |.|.+
T Consensus 309 K~VvvIGGGDTG~DCvG------Ts~RhGA~sV~qFE~mP-~PP~~Ra~~npWP--~wP~v~r~~y~hEE~~a~~GrDpR 379 (517)
T TIGR01317 309 KKVVVIGGGDTGADCVG------TSLRHGAASVHQFEIMP-KPPEERAKDNPWP--EWPKVYRVDYAHEEVKAKYGRDPR 379 (517)
T ss_pred CEEEEECCCCCCCHHHH------HHHHHHHHHHHHCCCCC-CCCHHHCCCCCCC--CCCCEEEECHHHHHHHHCCCCCCH
T ss_conf 67899757875622456------32355435523025688-8776772786486--575113302668989851795601
Q ss_pred EE
Q ss_conf 99
Q gi|254780675|r 391 VG 392 (481)
Q Consensus 391 ~~ 392 (481)
++
T Consensus 380 ey 381 (517)
T TIGR01317 380 EY 381 (517)
T ss_pred HH
T ss_conf 23
No 168
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=9.4e-07 Score=67.84 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=39.5
Q ss_pred CCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 221001220-123322100134420223431012440367402110232243057422000
Q gi|254780675|r 233 QFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 233 ~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+++ .+|+++++++++.++.+++++.++++ +| +++++|+|+-|=|..-.+.
T Consensus 116 ~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~--~g--~~i~a~lvVgADG~~S~vR 172 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLD--DG--ETLTARLLVAADGTHSALR 172 (395)
T ss_pred HHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEEC--CC--CEEEECEEEEECCCCHHHH
T ss_conf 999998840899699769889999982892799987--99--8998379999289962544
No 169
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.50 E-value=1.6e-07 Score=73.38 Aligned_cols=42 Identities=36% Similarity=0.519 Sum_probs=37.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCEEEEEE
Q ss_conf 4348999898579999999998799399997888---86246325
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG---LGGICLNW 45 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~---~GGtC~~~ 45 (481)
+|||+|||+|.||++||+.|++.|+||+|+||.. +||++..-
T Consensus 2 e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s 46 (549)
T PRK12834 2 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS 46 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 999899896789999999999879927999668888988467761
No 170
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.49 E-value=4.5e-07 Score=70.15 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 43489998985799999999987993999978
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY 35 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk 35 (481)
.++|+|||||.||..||..+|++|.+|+|+|-
T Consensus 3 ~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~em 34 (434)
T PRK05335 3 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 34 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 88569989868999999999968996799993
No 171
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.48 E-value=6.7e-07 Score=68.92 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=74.7
Q ss_pred CEEEECCCHHHHHHHHHHH--HCCCCEEEEEC-CC-CCEEEEEECCCCCHHHHHHHH-HHHHHHHHHCCCCC----CCCC
Q ss_conf 4899989857999999999--87993999978-88-862463256737088999999-99999842117821----3487
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAA--QLGFKVAIVEY-AG-LGGICLNWGCIPTKSLLRSAE-ILDHIQNAQHYGLN----VAGK 76 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a--~~G~~V~liEk-~~-~GGtC~~~GCiPsK~l~~~a~-~~~~~~~~~~~g~~----~~~~ 76 (481)
|++||||||||+.-|.+++ +.|++|.+||. .. ++|+ -|||.=-+ -|-...+ .... .-..-|. +..+
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~-~tyg~w~~-dl~~~~hawl~~---l~~~~W~~~~~y~~~ 75 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGN-NTYGVWDD-DLSDLGHAWLAD---LVEHRWSDAYEYRFP 75 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCCCCC-CHHHHHHHHHHH---HHCCCCCCEEEECCC
T ss_conf 9788747757899999999750587189867888767768-74421222-232789999998---841638980688387
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf -544999999999999998534468763014-142100000112222100236875200135555432258638997245
Q gi|254780675|r 77 -VEFNIEDIVKRSRDISHRLNRGVEFLMHKN-KVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHI 154 (481)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 154 (481)
-..++..-..+. ...++.+.+...+... |+.++.+.+--+...+ .........+..++.|+-|
T Consensus 76 ~~~~~L~~~Y~~~--~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~-------------~~~~~v~~~~g~~i~Ar~V 140 (419)
T TIGR01790 76 EEPIKLGRAYGSV--DRAQLHEELLQKCPEGSGVLWLEAKAIKVEADA-------------VSLSLVECAGGQRIQARLV 140 (419)
T ss_pred CCCHHCCCCCEEE--CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH-------------CCCCEEECCCCEEEEEEEE
T ss_conf 3430105665000--158999999986200376133013566665440-------------5511144289737840078
Q ss_pred EECCCCCC
Q ss_conf 52575431
Q gi|254780675|r 155 IIATGARP 162 (481)
Q Consensus 155 vIATGs~p 162 (481)
|-|||.+|
T Consensus 141 ~Da~G~~~ 148 (419)
T TIGR01790 141 IDARGFKP 148 (419)
T ss_pred EECCCCCC
T ss_conf 83257776
No 172
>KOG2415 consensus
Probab=98.46 E-value=8.4e-08 Score=75.47 Aligned_cols=49 Identities=43% Similarity=0.678 Sum_probs=38.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-CCCEEEEEECCCCC
Q ss_conf 8643489998985799999999987------9939999788-88624632567370
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQL------GFKVAIVEYA-GLGGICLNWGCIPT 50 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~------G~~V~liEk~-~~GGtC~~~GCiPs 50 (481)
+..|||+|+||||||++||+++.++ .++|+++||. .+||--+--.|+--
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep 129 (621)
T KOG2415 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEP 129 (621)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEECC
T ss_conf 00405899888815678888899888760783689999612314771321305065
No 173
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.44 E-value=3.6e-07 Score=70.92 Aligned_cols=44 Identities=32% Similarity=0.419 Sum_probs=39.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEEEE
Q ss_conf 98643489998985799999999987993999978888-624632
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GGICLN 44 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-GGtC~~ 44 (481)
|++.|||+|||||--|..+|+.|+.+|+||+|||++.+ .||.-+
T Consensus 3 ~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsr 47 (503)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSA 47 (503)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 677479899997788999999998679969999368756833477
No 174
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.44 E-value=1.2e-07 Score=74.21 Aligned_cols=87 Identities=15% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 4443215654332100023210133310000000012-------2--222221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.||++|||+|+-|+-.|..|+++|.+||+.|+.+++. | +.++++.+.-.+.+++.||+|++|+.|-+ +
T Consensus 327 GKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGk---D 403 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGK---D 403 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---C
T ss_conf 9989998977899999999997697579952577788667524862227789999999999826988983717687---6
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 34310124403674021102322430574
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
++++. . .-++|.||+++|-
T Consensus 404 -----itl~e----L-~~~yDAVfla~Ga 422 (654)
T PRK12769 404 -----ISLES----L-LEDYDAVFVGVGT 422 (654)
T ss_pred -----CCHHH----H-HHCCCEEEEECCC
T ss_conf -----58999----9-7369989995178
No 175
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.44 E-value=3.7e-07 Score=70.79 Aligned_cols=215 Identities=16% Similarity=0.209 Sum_probs=105.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CCCCEEEEEECCCCCHHHHHHHHHHHHHHH--HHCCCCCCCCCCC
Q ss_conf 43489998985799999999987993999978---888624632567370889999999999984--2117821348754
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY---AGLGGICLNWGCIPTKSLLRSAEILDHIQN--AQHYGLNVAGKVE 78 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk---~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~g~~~~~~~~ 78 (481)
-|.|+|+|-||||++.|-++-..|..|+-||. +++--. + --|-|- -.++.+.+.. ...||--...-+.
T Consensus 401 g~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDGLKIepLp~~-~---~~pir~---~~~l~~~L~eR~~~GFGGVaEygit 473 (1048)
T PRK06567 401 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITPLPFD-V---HKPIKF---WHEYKNLLSERMPRGFGGVAEYGIT 473 (1048)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCEEECCCCHH-H---CCCCHH---HHHHHHHHHHHHHCCCCCEEECCEE
T ss_conf 96489992486520188998747872898654452028746-5---264123---8998765666530365640202356
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 499999999999999853446876301-4142100000112222100236875200135555432258638997245525
Q gi|254780675|r 79 FNIEDIVKRSRDISHRLNRGVEFLMHK-NKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIA 157 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIA 157 (481)
..|.+-.- .- +.-++++ .+.. ++|--+|-+ ++++.. -..+-+|++-+|
T Consensus 474 ~rwdkn~l------~~----i~l~l~rr~~f~-~~ggvr~gg--tlt~~~------------------a~~lgfdhia~a 522 (1048)
T PRK06567 474 VRWDKNNL------DI----LRLILERNNNFK-YYDGVALDF--NITKEQ------------------AFDLGFDHIAFC 522 (1048)
T ss_pred EEECCCHH------HH----HHHHHHHHHCCE-EECCEEECC--EEEHHH------------------HHHCCCCEEEEE
T ss_conf 77442089------99----999997752564-635455456--202989------------------987487706743
Q ss_pred CCC-CCCCCCCCCCC-CCCCCCCCCCE---------ECCCCC-----CCCCCCCCCCCCCCCHHH---------------
Q ss_conf 754-31110111345-55422124521---------113334-----443215654332100023---------------
Q gi|254780675|r 158 TGA-RPRHIEGIEPD-SHLIWTYFDAL---------KPSKTP-----KSLIVMGSGAIGVEFSSF--------------- 206 (481)
Q Consensus 158 TGs-~p~~~~g~~~~-~~~~~t~~~~l---------~l~~~p-----~~ivIiGgG~ig~E~A~~--------------- 206 (481)
||+ +|+.++ ++.. .+.+-...|+| ..+.+. =-++|||||.+++..|+-
T Consensus 523 ~gag~p~~~~-~~n~larGvr~asdflM~Lqltga~~~~s~anlqvrlP~vVIGgGLTaiD~aTE~~ayY~~qVekf~~~ 601 (1048)
T PRK06567 523 IGAGQPKVLD-IENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKD 601 (1048)
T ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1589985026-665146677789999999873430110553240552356998587402436678888889999999999
Q ss_pred ------------------------------------HHCCCCCCCCEECCCCCC--CCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf ------------------------------------210133310000000012--222222122210012201233221
Q gi|254780675|r 207 ------------------------------------YKSLDVDVSLIEVKDRIL--PVEDSEISQFVQRSLQKRGIKILT 248 (481)
Q Consensus 207 ------------------------------------l~~lG~~Vtli~~~~~ll--~~~d~~~~~~~~~~l~~~Gv~i~~ 248 (481)
|+..| -|||++|+. +- |.+ +--.+++.++|+ +||.+..
T Consensus 602 yv~~~~~eEe~~Ia~EFL~Har~~r~~~~~~e~~~Ll~~WG-GVTI~YRk~-L~dSPAY-rlNhEEl~kALe-EGI~f~E 677 (1048)
T PRK06567 602 YIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGR-LQDSPAY-KLNHEELIYALA-LGVDFKE 677 (1048)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC-CEEEEECCC-CCCCCCH-HHCHHHHHHHHH-HHHHHHH
T ss_conf 99823787889999999999999997440668999999838-869998267-6669521-206899999997-2145662
Q ss_pred CHHHHHHCCCCCC
Q ss_conf 0013442022343
Q gi|254780675|r 249 ESKISSVKQKGDM 261 (481)
Q Consensus 249 ~~~v~~v~~~~~~ 261 (481)
+.++.++.-+.-+
T Consensus 678 ~l~P~~i~~D~~g 690 (1048)
T PRK06567 678 NMQPLRINVDKYG 690 (1048)
T ss_pred CCCCEEEECCCCC
T ss_conf 4885188515667
No 176
>PRK06996 hypothetical protein; Provisional
Probab=98.43 E-value=9.8e-07 Score=67.71 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=32.1
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC
Q ss_conf 986-43489998985799999999987----99399997888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQL----GFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~----G~~V~liEk~~ 37 (481)
|+. +|||+||||||.|++.|..+++. |.+|+++|+..
T Consensus 7 m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~ 48 (397)
T PRK06996 7 MAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDARE 48 (397)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 999998889999279999999999601687896699976898
No 177
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.43 E-value=2.2e-07 Score=72.49 Aligned_cols=36 Identities=42% Similarity=0.786 Sum_probs=32.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCE
Q ss_conf 34899989857999999999879--939999788-8862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYA-GLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~-~~GG 40 (481)
-||+|+||||+||+||+++|+.| +||+|+|+. .+||
T Consensus 22 ~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GG 60 (283)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGG 60 (283)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 066798789746689999984299806999851102689
No 178
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.43 E-value=2.6e-07 Score=71.96 Aligned_cols=43 Identities=40% Similarity=0.681 Sum_probs=37.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEECCCCCHHH
Q ss_conf 34899989857999999999879939999788-----88624632567370889
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-----GLGGICLNWGCIPTKSL 53 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-----~~GGtC~~~GCiPsK~l 53 (481)
|||+||||||+|=+||..|++.|.+|+|+||. ++|| .||=.++
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGG------AIPp~li 48 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGG------AIPPCLI 48 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCC------CCCHHHC
T ss_conf 96789816850689999998649748863024326588888------6651101
No 179
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.42 E-value=4.8e-07 Score=69.96 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=31.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC-----CCCEEEEECC
Q ss_conf 98643489998985799999999987-----9939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQL-----GFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~-----G~~V~liEk~ 36 (481)
|...||+++||+||+|+.+|++++.. .+++.+||++
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred HHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 65102558977772678999998532134773289999802
No 180
>PRK07208 hypothetical protein; Provisional
Probab=98.41 E-value=5.5e-07 Score=69.53 Aligned_cols=56 Identities=18% Similarity=0.414 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC-EEEEECCCCEEEEECCCEEECCC
Q ss_conf 122210012201233221001344202234310-12440367402110232243057
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVS-VQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~-v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
+-+.+.+.+.+.|.+++++++|++|..+++.+. +.....+|+..++.+|.|+.+.-
T Consensus 214 l~e~l~~~l~~~G~~i~~n~~V~~I~~~~~~~~~~~~~~~~~~~~~~~~d~vIsT~P 270 (474)
T PRK07208 214 LWEAAAEKLEAEGVKVVLNAKVTGLHHDGGRIVSVVAEDQDGNETTATGDQVISSMP 270 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEEECCCCEEEEECCEEEECCC
T ss_conf 999999999872987866987899983498899999984279636998887999885
No 181
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.41 E-value=4.8e-07 Score=69.98 Aligned_cols=37 Identities=46% Similarity=0.578 Sum_probs=34.2
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986-4348999898579999999998799399997888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|++ +|||+||||||+|+++|+.|++.|.+|+|||+..
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~ 38 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAP 38 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99788868999906899999999987899889995799
No 182
>KOG0042 consensus
Probab=98.38 E-value=1.7e-06 Score=66.02 Aligned_cols=40 Identities=35% Similarity=0.625 Sum_probs=36.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EEE
Q ss_conf 6434899989857999999999879939999788886-246
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG-GIC 42 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G-GtC 42 (481)
.+|||+|||||..|--||+-++-+|+||+|+|++.++ ||.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCC
T ss_conf 75537998888667541212011452147774266457765
No 183
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=98.36 E-value=2.2e-06 Score=65.13 Aligned_cols=37 Identities=43% Similarity=0.592 Sum_probs=33.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEE
Q ss_conf 34899989857999999999879939999788---88624
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA---GLGGI 41 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~---~~GGt 41 (481)
.||+|||+|-|||=||+.+++.|.+|.|.|.. ..||.
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGN 41 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGN 41 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 2378876425889999998637967984024785325786
No 184
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.36 E-value=6.4e-07 Score=69.08 Aligned_cols=35 Identities=40% Similarity=0.556 Sum_probs=32.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|. +|||+||||||+|+.+|+.|++.|.+|+|||+.
T Consensus 1 M~-~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~ 35 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGF 35 (384)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 98-189999992499999999999579959999689
No 185
>KOG0029 consensus
Probab=98.35 E-value=7.7e-07 Score=68.46 Aligned_cols=38 Identities=37% Similarity=0.649 Sum_probs=35.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCE
Q ss_conf 64348999898579999999998799399997-888862
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE-YAGLGG 40 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE-k~~~GG 40 (481)
++++|+|||||.||++||+.|.+.|.+|+|.| |+++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 888389989857899999999975982599971477676
No 186
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.33 E-value=7.6e-07 Score=68.52 Aligned_cols=38 Identities=42% Similarity=0.693 Sum_probs=34.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEE
Q ss_conf 434899989857999999999879939999788-88624
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGI 41 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGt 41 (481)
+-||+|+||||+|++||.+|++.|+||+|||++ .+||-
T Consensus 17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG 55 (229)
T pfam01946 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGG 55 (229)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 268899887817999999998789859999645268886
No 187
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=98.31 E-value=3.3e-06 Score=63.93 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 221222100122012332210013442022343101244036740211023224305742
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
+++.+.+.+.+++.|++|...+.+..++...+.+.- +. ++...+.+|.|++|.|.-
T Consensus 152 r~l~~AL~~~~~~lGv~i~~~~~v~~~~~~~~~~~~-~~---~~~~~~~ad~vV~A~G~w 207 (357)
T TIGR02352 152 RELLKALVKALEKLGVEIIEEVEVQEIEARGEKVTA-VV---TSSGDVQADQVVLAAGAW 207 (357)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEE-EC---CCCCCEECCEEEEECCCC
T ss_conf 899999999998569479862533564326766988-52---885426557479935733
No 188
>PRK06185 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-06 Score=67.33 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=34.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.+..||+||||||+|+++|+.|++.|.+|+|+||.
T Consensus 3 ~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~ 38 (409)
T PRK06185 3 MVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (409)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 887899899991889999999999779999999189
No 189
>PRK08948 consensus
Probab=98.30 E-value=1.5e-06 Score=66.32 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=40.0
Q ss_pred CCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 221001220-123322100134420223431012440367402110232243057422000
Q gi|254780675|r 233 QFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 233 ~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+++ .+|+++.++++++++.+++.+.++++ +|+ +++++.++.|=|..-.+.
T Consensus 113 ~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~--~g~--~~~a~llVgaDG~~S~vR 169 (392)
T PRK08948 113 QRLFALLRKAPGVTLHCPARVANVARTQESVTVTLD--NGE--TLQGKLLVAADGSHSALA 169 (392)
T ss_pred HHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEC--CCC--EEEECEEEEECCCCHHHH
T ss_conf 999999975899878558768998855882799978--998--998378999189973777
No 190
>PRK07608 hypothetical protein; Provisional
Probab=98.29 E-value=1.1e-06 Score=67.39 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 64348999898579999999998799399997888
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
-+|||+||||||+|+++|+.|++.|.+|+|||+..
T Consensus 4 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~ 38 (389)
T PRK07608 4 MKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQP 38 (389)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99988999906899999999983799889995899
No 191
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.29 E-value=9.9e-07 Score=67.69 Aligned_cols=52 Identities=37% Similarity=0.522 Sum_probs=43.8
Q ss_pred CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHH
Q ss_conf 434899989857999999-99987993999978-88862463256737088999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAI-RAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLR 55 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~-~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~ 55 (481)
.||.+|+|||-+|.-+|- .|++.|+||+|||| +.+||.|=-.-|--+-.|+|
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H 54 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFH 54 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 951799866367799999999970998899973066587344422488743677
No 192
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=1.4e-06 Score=66.66 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=33.3
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986-4348999898579999999998799399997888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+. +|||+||||||+|+++|+.|++.|.+|+|||+..
T Consensus 13 ~~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~ 50 (413)
T PRK07364 13 LRSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQP 50 (413)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99898998999927999999999986899889991799
No 193
>PRK07045 putative monooxygenase; Reviewed
Probab=98.26 E-value=1.8e-06 Score=65.86 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=41.3
Q ss_pred CCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 1001220-1233221001344202234310124403674021102322430574220000
Q gi|254780675|r 235 VQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 235 ~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.. .++++++++.++.++.++++..+.++..||+ ++++|.|+-|=|..-.+..
T Consensus 112 l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~--~~~adlvIGADG~~S~vR~ 169 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE--RVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCC--EEEEEEEEECCCCCCHHHH
T ss_conf 999974589819997989999998499259999958997--9974099995688627889
No 194
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.25 E-value=3.4e-06 Score=63.75 Aligned_cols=76 Identities=17% Similarity=0.387 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHCC---CCCCCCHHHHHHCCC-----CCCCCEEEEECCCCEEE---EECCCEEECCCCEEEEEC-CCCCC
Q ss_conf 1222100122012---332210013442022-----34310124403674021---102322430574220000-23222
Q gi|254780675|r 231 ISQFVQRSLQKRG---IKILTESKISSVKQK-----GDMVSVQVERKDGSVSS---MQAEKLLLSAGVQGNIEN-IGLEK 298 (481)
Q Consensus 231 ~~~~~~~~l~~~G---v~i~~~~~v~~v~~~-----~~~~~v~~~~~dG~~~~---i~~D~vl~a~Gr~Pn~~~-L~Le~ 298 (481)
+.+.+.+.+.+.. |.++...+++++..+ .+.+.++++ || ++ |+++.|+-|=|+.=.+.. +|++.
T Consensus 125 ~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~--~G--~~~~~l~a~LlvgADG~~S~vR~~~gI~~ 200 (445)
T TIGR01988 125 LQQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSDEVELTLS--DG--RQKLLLRARLLVGADGANSKVRQLAGIPT 200 (445)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEC--CC--CEEEEEEECEEEEECCCCHHHHHHHCCCC
T ss_conf 999999999966896477516721477403677568860799970--89--47678985327873586525799718884
Q ss_pred CCC-CCCCEEEEE
Q ss_conf 112-357326642
Q gi|254780675|r 299 IGV-KTSNGCIIV 310 (481)
Q Consensus 299 ~gi-~~~~g~i~v 310 (481)
.+- .+.+-.|+.
T Consensus 201 ~~~R~Y~Q~a~Va 213 (445)
T TIGR01988 201 TGWRDYGQSAVVA 213 (445)
T ss_pred CEEECCCCEEEEE
T ss_conf 3011645538999
No 195
>PRK08013 hypothetical protein; Provisional
Probab=98.25 E-value=1.6e-06 Score=66.21 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|. +|||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus 1 M~-~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 1 MQ-SVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRV 36 (400)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99-6788999935999999999971899589991899
No 196
>PRK07233 hypothetical protein; Provisional
Probab=98.25 E-value=1.8e-06 Score=65.87 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 22122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
..+.+.+.+.|++.|.+|++|++|++|..+++++.+.. .+| +++++|.|++|+-.
T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~--~~g--~~~~ad~VI~a~p~ 251 (430)
T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVE--TDG--EEEAFDAVISTIPP 251 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEE--ECC--CEEECCEEEECCCH
T ss_conf 99999999999975999997997889999599899999--799--49993999989998
No 197
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=98.23 E-value=2.7e-05 Score=57.22 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCC
Q ss_conf 34899989857999999999879939999788-886
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLG 39 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~G 39 (481)
=||+|||||-||.++|..|+++|.+|+|+|++ .++
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A 292 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 292 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 718998938999999999997899689994798756
No 198
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.23 E-value=1.4e-06 Score=66.70 Aligned_cols=37 Identities=46% Similarity=0.767 Sum_probs=33.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 434899989857999999999879939999788-8862
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
+-||+|+|+||+|++||.++++.|+||+|+|+. .+||
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 32679987685057899999867964999973014687
No 199
>PRK02106 choline dehydrogenase; Validated
Probab=98.23 E-value=1.7e-06 Score=66.03 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=33.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 9864348999898579999999998-799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQ-LGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~-~G~~V~liEk~~ 37 (481)
|+.+||+||||||+||...|.+|++ .+.+|+|+|.+.
T Consensus 2 ~~~eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG~ 39 (555)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 88712889989668999999998349898599986899
No 200
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.23 E-value=1.8e-06 Score=65.72 Aligned_cols=52 Identities=13% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf 2221001220123322100134420223431012440367402110232243057
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
.+.+.+.++..|.+|++++.|++|+.+++++.+... .+| +++++|.|++|+.
T Consensus 211 ~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~-~~g--~~~~ad~VI~a~p 262 (430)
T TIGR03467 211 PEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIR-AGG--ETLTADAVVLAVP 262 (430)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCC--EEEECCEEEECCC
T ss_conf 999999999649767769836899997998899995-098--7997799998989
No 201
>PRK06847 hypothetical protein; Provisional
Probab=98.20 E-value=3.6e-07 Score=70.88 Aligned_cols=59 Identities=15% Similarity=0.372 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 122210012201233221001344202234310124403674021102322430574220000
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.+.+++.|+++++++++++++.+++++.+++ .||+ ++++|.|+-|=|..-.+..
T Consensus 109 L~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~--~dG~--~~~adllIGADG~~S~vR~ 167 (375)
T PRK06847 109 LARILADAARASGVDVRLGTTVTAIEQDDDGVDVTF--TDGT--TGRYDLVVGADGVYSKVRS 167 (375)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEE--CCCC--EEEEEEEEECCCCCCHHHH
T ss_conf 999999989846997996658978666498589998--5898--8998799985787627889
No 202
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=6.9e-06 Score=61.55 Aligned_cols=22 Identities=36% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9999999987993999978888
Q gi|254780675|r 17 YVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 17 ~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|+||+.+++.|++|+||+|..+
T Consensus 1 L~AAl~~~~~G~~V~vv~K~~~ 22 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFP 22 (570)
T ss_pred CHHHHHHHHCCCCEEEEECCCC
T ss_conf 9578999976991899978999
No 203
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.17 E-value=6.2e-07 Score=69.15 Aligned_cols=97 Identities=20% Similarity=0.443 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCC------CCCC-------CCCCCCCCCHHHHHCCCCCCCCHHHHHHC
Q ss_conf 4321565433210002321013331000000001------2222-------22212221001220123322100134420
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRI------LPVE-------DSEISQFVQRSLQKRGIKILTESKISSVK 256 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~l------l~~~-------d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~ 256 (481)
.++|||||+-|+..|..++++|.+|+|+++.+.. +|.+ ..++.....+.+.+.+++++.++.|+++.
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 80 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAID 80 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 99999976999999999984999799993799935755774771164543314561899999987597999687799997
Q ss_pred CCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 223431012440367402110232243057422000
Q gi|254780675|r 257 QKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 257 ~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
..+.. |+ ..+| +++++|.+++|+|-+|+..
T Consensus 81 ~~~~~--v~--~~~g--~~~~~d~lviAtG~~~~~~ 110 (277)
T pfam07992 81 KAGKK--VT--LDDG--KELTYDKLVIATGARPRRP 110 (277)
T ss_pred CCCCE--EE--ECCC--CEEECCEEEECCCCCCCCC
T ss_conf 89998--99--8789--3998599999879986225
No 204
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.17 E-value=3.6e-06 Score=63.58 Aligned_cols=40 Identities=33% Similarity=0.472 Sum_probs=36.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEE
Q ss_conf 8643489998985799999999987993999978888-624
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GGI 41 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~-GGt 41 (481)
.++|||+|||||-.|.+.|+.|+.+|++|+|+||+.+ .||
T Consensus 3 ~~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GT 43 (545)
T PRK11101 3 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA 43 (545)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 86176899998689999999998679939999899761620
No 205
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.16 E-value=7.8e-07 Score=68.45 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+.+|..++++|.+|+|||+.
T Consensus 151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~ 181 (443)
T PRK09564 151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLE 181 (443)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 5999997099999999998669889999957
No 206
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.15 E-value=8.2e-06 Score=61.01 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=57.0
Q ss_pred CCCCCHHHHH-CCCCCCCCHHHHHHCCCCCC-CCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCC-CCCCCCCCCC--
Q ss_conf 2221001220-12332210013442022343-1012440-367402110232243057422000023-2221123573--
Q gi|254780675|r 232 SQFVQRSLQK-RGIKILTESKISSVKQKGDM-VSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIG-LEKIGVKTSN-- 305 (481)
Q Consensus 232 ~~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~-~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~-Le~~gi~~~~-- 305 (481)
.+.+.+.+++ .|++++++++|+.+++.+++ ..|++.+ .+|+.+++.++.|++..|-. .|. |.+.||.-.+
T Consensus 185 T~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~----sL~LlQksgi~e~~~y 260 (489)
T pfam06039 185 TRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGG----ALPLLQKSGIPESKGY 260 (489)
T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHH----HHHHHHHCCCHHHCCC
T ss_conf 999999985189828992788534588899987999986578974899826799888757----7899998198332363
Q ss_pred -EEEEECCCCEEECCC
Q ss_conf -266424874230258
Q gi|254780675|r 306 -GCIIVDGYGRTNVPG 320 (481)
Q Consensus 306 -g~i~vd~~~qTs~p~ 320 (481)
|+++--.++.+++|.
T Consensus 261 ggfPVsG~fl~~~np~ 276 (489)
T pfam06039 261 GGFPVSGQFLRCTNPE 276 (489)
T ss_pred CCCCCCCEEEECCCHH
T ss_conf 6677555688539989
No 207
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.13 E-value=1.1e-06 Score=67.26 Aligned_cols=32 Identities=9% Similarity=0.287 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||.-|+..|-.++++|.+|+|||+..
T Consensus 150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~ 181 (438)
T PRK13512 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 79998955899999999997299089999357
No 208
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.13 E-value=3e-06 Score=64.18 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCE
Q ss_conf 89998985799999999987993999978-88862
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGG 40 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GG 40 (481)
++|||||.|||++|++|+..|.+|+|+|+ +.+||
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGG 35 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGG 35 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 96857776899999999737952899860689875
No 209
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.12 E-value=4.5e-06 Score=62.91 Aligned_cols=37 Identities=43% Similarity=0.647 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|..+|||+|||+|.||+.||+.+++.|++|+|+||..
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~ 39 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAP 39 (562)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3211698998784888999999996699579997236
No 210
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.11 E-value=4.7e-07 Score=70.04 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 4443215654332100023210133310000000012-------22--22221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.++++|||+|+-|+-.|..|+++|.+|||+|+.+++. |. .++++.+.-.+.+++.||+|++|+.|-. +
T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~---d 219 (472)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGK---D 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCC---C
T ss_conf 9989998977899999999986697589972577777546531788555358999999999857978990523187---5
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 34310124403674021102322430574-220
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++. ..-++|.|++|+|- .|+
T Consensus 220 -----it~~~-----L~~~yDAV~la~Ga~~~r 242 (472)
T PRK12810 220 -----ITAEQ-----LLAEYDAVFLGGGAYKPR 242 (472)
T ss_pred -----CCHHH-----HHCCCCEEEEECCCCCCC
T ss_conf -----76999-----850579899903778785
No 211
>pfam03486 HI0933_like HI0933-like protein.
Probab=98.09 E-value=9.9e-07 Score=67.69 Aligned_cols=82 Identities=27% Similarity=0.433 Sum_probs=59.4
Q ss_pred HHHHHCCCCCCCCEECCCCCCCCCC--CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEECCCCEEEEECCC
Q ss_conf 0232101333100000000122222--221222100122012332210013442022343-1012440367402110232
Q gi|254780675|r 204 SSFYKSLDVDVSLIEVKDRILPVED--SEISQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERKDGSVSSMQAEK 280 (481)
Q Consensus 204 A~~l~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG~~~~i~~D~ 280 (481)
-.+|.++|... -.+...++.|..+ .++.+.+++.+++.||+|+++.+|++|.+++++ ..+.. . ..++.+|.
T Consensus 82 ~~ff~~~Gl~~-~~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~--~---~~~~~a~~ 155 (405)
T pfam03486 82 IAWFEELGVPL-KEEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDT--G---GEELEADS 155 (405)
T ss_pred HHHHHHCCCEE-EECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEE--C---CCEEEECE
T ss_conf 99999779905-977899797898986999999999999779789958887899975994599994--8---95897278
Q ss_pred EEECCCCE--EEE
Q ss_conf 24305742--200
Q gi|254780675|r 281 LLLSAGVQ--GNI 291 (481)
Q Consensus 281 vl~a~Gr~--Pn~ 291 (481)
|++|+|-. |.+
T Consensus 156 vIlAtGG~s~p~~ 168 (405)
T pfam03486 156 LVLATGGLSWPKT 168 (405)
T ss_pred EEEECCCCCCCCC
T ss_conf 9990488665655
No 212
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.06 E-value=4.4e-05 Score=55.73 Aligned_cols=96 Identities=20% Similarity=0.367 Sum_probs=59.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 48999898579999999998799399997888-86246325673708899999999999842117821348754499999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDI 84 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 84 (481)
.++|||||+-|+.+|..++++|.+|+|||+.. +- . ..+| +++
T Consensus 139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il----------------------------------~--~~~d-~~~ 181 (427)
T TIGR03385 139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKIL----------------------------------N--KLFD-EEM 181 (427)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC----------------------------------C--CCCC-HHH
T ss_conf 89999963999999999997699899998468336----------------------------------5--5489-999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 99999999985344687630141421000001122221002368752001355554322586389972455257543111
Q gi|254780675|r 85 VKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRH 164 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~~ 164 (481)
...++..+++.||+++.+... ..+.. +.. ........++.+|.+|+|+|-+|+.
T Consensus 182 -----------~~~~~~~l~~~Gv~i~~~~~v------~~i~~-~~~--------~~~l~~g~~i~~D~vi~a~G~~Pn~ 235 (427)
T TIGR03385 182 -----------NQIVEEELEKHEIELRLNEEV------DSIIG-EER--------VGVITSGGVYQADMVILAIGVKPNS 235 (427)
T ss_pred -----------HHHHHHHHHHCCCEEEECCEE------EEEEC-CCC--------EEEEECCCEEECCEEEECCCCCCCC
T ss_conf -----------999999999759799979889------99987-887--------8999469999728999887746764
No 213
>PRK13984 putative oxidoreductase; Provisional
Probab=98.05 E-value=5.8e-07 Score=69.36 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 4443215654332100023210133310000000012-------2--222221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.|+++|||+|+.|+-.|..|+++|.+||+.|+.+++. | ++++++.+.=.+.|++.||+|++|+.|-+ +
T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk---D 359 (604)
T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK---D 359 (604)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---C
T ss_conf 9989998986899999999998698689974567789723315872228789999999999972989976857798---4
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 34310124403674021102322430574
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
++++. . .-.+|.||+++|-
T Consensus 360 -----it~ee----L-~~~yDAVfLa~Ga 378 (604)
T PRK13984 360 -----ISLEE----L-REKHDAVFVSTGF 378 (604)
T ss_pred -----CCHHH----H-HHCCCEEEEECCC
T ss_conf -----78999----9-7058999995388
No 214
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.04 E-value=5.3e-06 Score=62.37 Aligned_cols=42 Identities=36% Similarity=0.635 Sum_probs=37.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCEEEEE
Q ss_conf 64348999898579999999998799399997-8888624632
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE-YAGLGGICLN 44 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liE-k~~~GGtC~~ 44 (481)
+.-||+|+|+|-+|++||..+.+.|.+|+|+| ++++||-|.-
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEE
T ss_conf 8886899897268889999876468189998646776764677
No 215
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.02 E-value=1.1e-05 Score=60.17 Aligned_cols=40 Identities=38% Similarity=0.557 Sum_probs=36.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 9864348999898579999999998799399997888862
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
|..++||+|||||-+|+++|.+|++.|.+|+++|++..|+
T Consensus 1 ~~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9976439998986999999999997699199991798876
No 216
>PRK09897 hypothetical protein; Provisional
Probab=98.02 E-value=0.00017 Score=51.41 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CCEEEEEECCCCCHHHHHHHH----------HHHHH----
Q ss_conf 986434899989857999999999879--9399997888-862463256737088999999----------99999----
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAG-LGGICLNWGCIPTKSLLRSAE----------ILDHI---- 63 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~-~GGtC~~~GCiPsK~l~~~a~----------~~~~~---- 63 (481)
|.+ |+|||+||.|+..-..+-+.+ +.++|+|+.. .|=--.+.--.-|+.|+.+.. ..+-+
T Consensus 1 mkr---IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q~ 77 (535)
T PRK09897 1 MKK---IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQE 77 (535)
T ss_pred CCE---EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 950---79966786249999998646998269998215667789986854455888750310558851356999987388
Q ss_pred -HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHCCC--EEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -842117821348754499999999999999853446876---30141--421000001122221002368752001355
Q gi|254780675|r 64 -QNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFL---MHKNK--VDIIWGKATLKNPSEITVSKPSQPAVQPQH 137 (481)
Q Consensus 64 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~ 137 (481)
.....|+++-.. ++-.++.-|.- .-+-++.+...+ .++.| |.+..++ +.+| + ....++.....
T Consensus 78 ~~~L~~~~id~~~---l~~rqflPRiL-lGeYl~~QF~~Lve~a~~~G~~i~Vh~~~-~VtD---i-~~~~~gv~l~~-- 146 (535)
T PRK09897 78 ASHLQRYGVKKET---LHDRQFLPRIL-LGEYFRDQFLRLVDQARQQKFAVAVYESC-QVTD---L-QITNAGVMLAT-- 146 (535)
T ss_pred HHHHHHCCCCHHH---CCCCCEEHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEECC-EEEE---E-EECCCCEEEEE--
T ss_conf 8789871998322---64101004888-88999999999999998659669997576-6676---4-43699559983--
Q ss_pred CCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCCCCCCCCCCC-CCCEECCC-CCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 55432258638997245525754-311101113455542212-45211133-34443215654332100023210
Q gi|254780675|r 138 PIPKKVLGEGTYKAKHIIIATGA-RPRHIEGIEPDSHLIWTY-FDALKPSK-TPKSLIVMGSGAIGVEFSSFYKS 209 (481)
Q Consensus 138 ~~~~~~~~~~~~~a~~ivIATGs-~p~~~~g~~~~~~~~~t~-~~~l~l~~-~p~~ivIiGgG~ig~E~A~~l~~ 209 (481)
........+|.+|||||- +|....+-+ ++ +.| ..-+.+.+ .|-++.|.|...+|+..|-++++
T Consensus 147 -----~~~~~~~~FD~vVIaTGH~WP~~~e~~~--~Y--F~SPw~~l~~a~ip~~~VgI~GSSLSAIDAa~ala~ 212 (535)
T PRK09897 147 -----NQDLPSETFDLAVIATGHVWPDEEEATR--TY--FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAI 212 (535)
T ss_pred -----CCCCCCCCCEEEEEECCCCCCCCCCCCC--CC--CCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf -----3788764320799807987998776776--66--789997365425787527762376578999999998
No 217
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.01 E-value=6.7e-07 Score=68.91 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
+|++|||+|+-|+=.|..|+++|.+||+.|+.+++. | ++++++.+.-.+.|++.||+|++|+.|-+ +
T Consensus 311 kKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGk---D- 386 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---D- 386 (639)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECC---C-
T ss_conf 989998975899999999997599069993688889868535874527778999999999864988991967798---6-
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++. . .-++|.|++++|- .|.
T Consensus 387 ----it~~e----L-~~~yDAVflg~Ga~~~~ 409 (639)
T PRK12809 387 ----ITFSD----L-TSEYDAVFIGVGTYGMM 409 (639)
T ss_pred ----CCHHH----H-HHHCCEEEEEECCCCCC
T ss_conf ----88999----9-73179899973678885
No 218
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.00 E-value=2.3e-06 Score=64.98 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCCCHHHHHCC---CCCCCCEECCCCCC-----CC-----C-CCCCCCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf 432156543321000232101---33310000000012-----22-----2-2221222100122012332210013442
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSL---DVDVSLIEVKDRIL-----PV-----E-DSEISQFVQRSLQKRGIKILTESKISSV 255 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~l---G~~Vtli~~~~~ll-----~~-----~-d~~~~~~~~~~l~~~Gv~i~~~~~v~~v 255 (481)
++||||||+.|+..|..|++. +.+||||++.+.+. |. . .+++.-.+.+.+.+.|++++.+ +|++|
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~V~~I 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEECCHHHHHHHCCCEEEEE-EEEEE
T ss_conf 99999960999999999704178998399999988651625169997404779992216899997779499963-78999
Q ss_pred CCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 02234310124403674021102322430574220000
Q gi|254780675|r 256 KQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 256 ~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
..+... |++ .+| +++++|++++|+|.+|+...
T Consensus 80 D~~~k~--V~~--~~g--~~l~YD~LViAtGs~~~~~~ 111 (364)
T TIGR03169 80 DPDRRK--VLL--ANR--PPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ECCCCE--EEE--CCC--CEEECCEEEEECCCCCCCCC
T ss_conf 768898--998--899--88736889994367778899
No 219
>PRK11749 putative oxidoreductase; Provisional
Probab=98.00 E-value=9.9e-07 Score=67.69 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-------C--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 44432156543321000232101333100000000122-------2--22221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-------V--EDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.||++|||+|+-|+-.|..|+++|.+|||+|+.+++.. . .++++.+...+.+++.||+|++|+.+-. +
T Consensus 140 gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~---d 216 (460)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGR---D 216 (460)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECC---C
T ss_conf 9989998967899999999997698479970478787557545899755447999999999853978985558566---4
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 34310124403674021102322430574-220
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++. ..-++|.||+|+|- .|.
T Consensus 217 -----itl~~-----L~~~ydAV~lAtGa~~~r 239 (460)
T PRK11749 217 -----ITLDE-----LRAEYDAVFIGTGLGLPR 239 (460)
T ss_pred -----CCHHH-----HHHCCCEEEEECCCCCCC
T ss_conf -----32887-----741148899944789886
No 220
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=1e-05 Score=60.27 Aligned_cols=44 Identities=39% Similarity=0.563 Sum_probs=38.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECC
Q ss_conf 43489998985799999999987993999978-888624632567
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGC 47 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GC 47 (481)
.||++|+|+|-+|...|..|++.|++|+|||| +.+||.|--.-|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d 45 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEAD 45 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 975899877626889999999759879999625667875434347
No 221
>KOG2311 consensus
Probab=97.99 E-value=2.8e-05 Score=57.16 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCCEE-ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCC
Q ss_conf 87423-02585883044455324441232025555430246644321223200245430334000149687610797
Q gi|254780675|r 312 GYGRT-NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGL 387 (481)
Q Consensus 312 ~~~qT-s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~ 387 (481)
..++| .+++.|-+|-++|--.. -.|.+||.+|+-|..-.....+ ...+++ .-+++|.--+.+...|.
T Consensus 381 ~sLeTkkV~GLF~AGQINGTTGY-EEAAAQGIiAGiNA~~~a~~~~--~~~v~R------te~yIGvLIDDL~t~g~ 448 (679)
T KOG2311 381 PSLETKKVQGLFFAGQINGTTGY-EEAAAQGIIAGINASLRASGKP--PVVVSR------TEGYIGVLIDDLTTLGT 448 (679)
T ss_pred HHHHHHHCCCEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHCCCC--CEEEEC------CCCEEEEEEHHHHCCCC
T ss_conf 05654001434774123585405-7787651675300555513799--705642------54336777223341587
No 222
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.98 E-value=1.1e-05 Score=60.09 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=46.1
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 221001220123322100134420223431012440-367402110232243057422000
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+++.|++++++.+++.++.+++++.+.+.. .+|+..++++|.|+-|=|..-.+.
T Consensus 105 ~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgADG~~S~vR 165 (349)
T pfam01494 105 PILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVR 165 (349)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHH
T ss_conf 9999999857998996617877520599437999845899558999768841577764899
No 223
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.96 E-value=1.1e-06 Score=67.47 Aligned_cols=88 Identities=14% Similarity=0.276 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCC---------CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 444321565433210002321013331000000001222---------22221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPV---------EDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.||++|||||+-|+-.|..|+++|.+|||.|+.+++... .++++.+.-.+.+.+.||+|++|+.+-+ +
T Consensus 137 gkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~---d 213 (560)
T PRK12771 137 GKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGE---D 213 (560)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECC---C
T ss_conf 9989998977899999999997698589967678889888356875447589999999999964967983878446---5
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 343101244036740211023224305742
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
++++.- .-.+|.|++|+|-.
T Consensus 214 -----it~~~L-----~~~yDAV~la~Ga~ 233 (560)
T PRK12771 214 -----ITLEQL-----EGDYDAVFVAIGAQ 233 (560)
T ss_pred -----CCHHHH-----HCCCCEEEECCCCC
T ss_conf -----679997-----17788899916878
No 224
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.96 E-value=9.4e-06 Score=60.59 Aligned_cols=108 Identities=22% Similarity=0.399 Sum_probs=67.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 89998985799999999987993999978888624632567370889999999999984211782134875449999999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIVK 86 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 86 (481)
++|||||+-|+..|=-.+++|.+|+|+.+.. .++ +..+
T Consensus 184 L~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~--------------------~ll----------------~~~e------ 221 (494)
T TIGR02053 184 LVVIGGGAIGVELAQAFARLGSEVTILQRSE--------------------RLL----------------PREE------ 221 (494)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEHHHHHH--------------------HHC----------------CCCC------
T ss_conf 8888652899999999985776140367998--------------------644----------------6468------
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC--
Q ss_conf 9999999853446876301-4142100000112222100236875200135555432258638997245525754311--
Q gi|254780675|r 87 RSRDISHRLNRGVEFLMHK-NKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR-- 163 (481)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~-- 163 (481)
...+..++..|.. .||+++...-.. ..|++.+.+...+.... ..+...++||+++||||-+|+
T Consensus 222 ------peis~~V~~~l~~eeGi~~~~~~r~~---~~v~~rngg~~~~~~e~-----~~~~~~~eAd~lLVATGR~PN~~ 287 (494)
T TIGR02053 222 ------PEISAAVEEALAEEEGIEVVTSARQV---KAVSVRNGGGKIVTVEK-----NGGKAEVEADELLVATGRRPNTD 287 (494)
T ss_pred ------HHHHHHHHHHHCCCCCEEEEECCEEE---EEEEECCCCEEEEEEEC-----CCCCCEEEHHHHHHHHCCCCCCC
T ss_conf ------88999999984147877998044035---54445279818999855-----89874574311255527875666
Q ss_pred CCCCCCC
Q ss_conf 1011134
Q gi|254780675|r 164 HIEGIEP 170 (481)
Q Consensus 164 ~~~g~~~ 170 (481)
.|.|++.
T Consensus 288 gL~GLe~ 294 (494)
T TIGR02053 288 GLNGLEK 294 (494)
T ss_pred CCCCHHH
T ss_conf 6774234
No 225
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=97.95 E-value=5.1e-06 Score=62.49 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCC---------------------------------C-------
Q ss_conf 443215654332100023210133310000000012222---------------------------------2-------
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVE---------------------------------D------- 228 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~---------------------------------d------- 228 (481)
||++|||+|+.|+-.+-.+..-|.+++++|+++.+...+ +
T Consensus 2 KrVAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Ntsk~~~~fSDfP~P~~~p~f~ 81 (532)
T pfam00743 2 KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSKEMSCFSDFPFPEDYPNFM 81 (532)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCC
T ss_conf 87999897299999999998779982999779997350668888788867648970685890051389998998788998
Q ss_pred --CCCCCCCCHHHHHCCC--CCCCCHHHHHHCCCCC-----CCCEEEEECCCCEEEEECCCEEECCCC--EEEEE
Q ss_conf --2212221001220123--3221001344202234-----310124403674021102322430574--22000
Q gi|254780675|r 229 --SEISQFVQRSLQKRGI--KILTESKISSVKQKGD-----MVSVQVERKDGSVSSMQAEKLLLSAGV--QGNIE 292 (481)
Q Consensus 229 --~~~~~~~~~~l~~~Gv--~i~~~~~v~~v~~~~~-----~~~v~~~~~dG~~~~i~~D~vl~a~Gr--~Pn~~ 292 (481)
.++.++++.+-+..++ .|+++++|.++++..+ ...|+.+ .+|+.++-.+|.|++|+|. .||..
T Consensus 82 ~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~-~~g~~~~~~fD~ViVctG~~~~P~iP 155 (532)
T pfam00743 82 HNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTE-HEGKQESAVFDAVMVCTGHHTNPHLP 155 (532)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEEEEEEECCCCCCCCCC
T ss_conf 989999999999998099673765778999997667666861899998-58908899977999946677868767
No 226
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.95 E-value=1.4e-05 Score=59.28 Aligned_cols=38 Identities=42% Similarity=0.614 Sum_probs=34.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEE
Q ss_conf 4899989857999999999879939999788-8862463
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICL 43 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~ 43 (481)
-|||||+|-||++||+.+.+.|.+|+|+||. .+||...
T Consensus 411 rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS~ 449 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 689989757999999999977995799957898887400
No 227
>PRK13748 putative mercuric reductase; Provisional
Probab=97.95 E-value=7.8e-05 Score=53.89 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECC
Q ss_conf 33444321565433210002321013331000000
Q gi|254780675|r 186 KTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVK 220 (481)
Q Consensus 186 ~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~ 220 (481)
.-|=.++|||+|+-|...|--.+++|.+|+|||+.
T Consensus 96 ~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~ 130 (561)
T PRK13748 96 EGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99876899895889999999999789979999479
No 228
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.94 E-value=1.5e-05 Score=59.17 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCCCCCHHHHHC-CCCCCCCHHHHHHCCCCCC-CCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCC--
Q ss_conf 122210012201-2332210013442022343-1012440-3674021102322430574220000232221123573--
Q gi|254780675|r 231 ISQFVQRSLQKR-GIKILTESKISSVKQKGDM-VSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSN-- 305 (481)
Q Consensus 231 ~~~~~~~~l~~~-Gv~i~~~~~v~~v~~~~~~-~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~-- 305 (481)
+.+.+.+.|++. |++++++++|+.+++..++ ..|++.+ ..|..+++.++.|++..|-.. =.| |.+.||.-.+
T Consensus 186 LTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAGG~s--L~L-LQksgi~E~kgy 262 (497)
T PRK13339 186 LTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAGGGA--IPL-LQKSGIPESKHL 262 (497)
T ss_pred HHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHH--HHH-HHHCCCCCCCCC
T ss_conf 99999999974898399947886321778999889999965789759999367998887377--899-998499602465
Q ss_pred -EEEEECCCCEEECCC--------CEEECCCCCCCC
Q ss_conf -266424874230258--------588304445532
Q gi|254780675|r 306 -GCIIVDGYGRTNVPG--------IYAIGDVAGAPM 332 (481)
Q Consensus 306 -g~i~vd~~~qTs~p~--------IyA~GDv~g~~~ 332 (481)
|+++--.++++.+|. ||---.+--.|+
T Consensus 263 ggFPVsG~fl~~~np~iv~~H~aKVYg~a~vgaPPM 298 (497)
T PRK13339 263 GGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPM 298 (497)
T ss_pred CCCCCCCEEEECCCHHHHHHHHCCEECCCCCCCCCC
T ss_conf 777634568954998999875240522378997986
No 229
>PRK05868 hypothetical protein; Validated
Probab=97.93 E-value=1.8e-06 Score=65.88 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf 1222100122012332210013442022343101244036740211023224305742200002
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
+.+.+.... +.+++++++..++.++.+++++.|++. ||+ +.++|.|+-|=|..-.+..+
T Consensus 107 L~~~L~~a~-~~~v~~~~g~~v~~i~~~~~~V~V~f~--dg~--~~~~DlVIGADGi~S~VR~~ 165 (372)
T PRK05868 107 LVELLYGAT-QPTVEYLFDDSISTLQDDGAAVRVTFE--RAA--AREFDLVIGADGLHSNVRRL 165 (372)
T ss_pred HHHHHHHHC-CCCEEEEECCEEEEEEECCCEEEEEEE--CCC--EEEEEEEEECCCCCHHHHHH
T ss_conf 999998634-588099957888999964997999990--798--57865899747874177887
No 230
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.93 E-value=3.3e-06 Score=63.85 Aligned_cols=34 Identities=35% Similarity=0.662 Sum_probs=31.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4348999898579999999998799399997888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
+-||+||||||+|+++|..|++.|.+|+|+||.+
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~ 34 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHA 34 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9978999928899999999987799899992899
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.93 E-value=4.7e-06 Score=62.79 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=19.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.|+|||||.-|+.+|..+.++|.+|++||..
T Consensus 146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~ 176 (400)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 3999885589999999999759948999534
No 232
>PRK07045 putative monooxygenase; Reviewed
Probab=97.89 E-value=4.6e-06 Score=62.83 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=33.8
Q ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986-4348999898579999999998799399997888
Q gi|254780675|r 1 MSR-LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~-~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+. ++||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~ 38 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99899858999928899999999986799899990899
No 233
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.89 E-value=1.3e-06 Score=66.88 Aligned_cols=88 Identities=16% Similarity=0.306 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 4443215654332100023210133310000000012-------2--222221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.|+++|||+|+-|+-.|..|+++|.+||+.|+.+++. | +.++++.+.=.+.+.+.||+|++|+.+-+ +
T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~---d 269 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR---D 269 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC---C
T ss_conf 9979996837899999999997799069981588889867644863338999999999999971985886679477---4
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 343101244036740211023224305742
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
++++. . .-++|.|++|+|-.
T Consensus 270 -----itl~~----L-~~~yDAVflaiGa~ 289 (652)
T PRK12814 270 -----ITLEE----L-QKEFDAVLLAVGAQ 289 (652)
T ss_pred -----CCHHH----H-HHHCCEEEEEECCC
T ss_conf -----77999----9-86589999975578
No 234
>PRK04965 nitric oxide reductase; Provisional
Probab=97.89 E-value=1e-04 Score=53.13 Aligned_cols=96 Identities=15% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCC--CCCCEECCCCC------CCC-C--C---CCCCC-CCCHHHHHCCCCCCCCHHHH
Q ss_conf 443215654332100023210133--31000000001------222-2--2---22122-21001220123322100134
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDV--DVSLIEVKDRI------LPV-E--D---SEISQ-FVQRSLQKRGIKILTESKIS 253 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~--~Vtli~~~~~l------l~~-~--d---~~~~~-~~~~~l~~~Gv~i~~~~~v~ 253 (481)
++++|||+|.-|+.+|..+++++. ++|++...+.. |+. + . .++.. ...+..++.+|+++++++|+
T Consensus 3 ~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~Y~rp~Ls~~~~~~~~~~~l~~~~~~~~~~~~~I~l~~~~~V~ 82 (378)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (378)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHCCCHHHHHHHCCEEEECCCEEE
T ss_conf 99999988299999999997119498699998999988767816698828999689531798999874897998698999
Q ss_pred HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 42022343101244036740211023224305742200
Q gi|254780675|r 254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
+|..+... |. .+| +++++|.+++|+|-+|..
T Consensus 83 ~ID~~~k~--V~---~~g--~~~~YDkLVLATGa~p~~ 113 (378)
T PRK04965 83 DIDAEAQV--VK---SQG--NQWQYDKLVLATGASAFV 113 (378)
T ss_pred EECCCCCE--EE---ECC--CEEECCEEEEECCCCCCC
T ss_conf 98464637--99---589--198468799935887557
No 235
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=97.89 E-value=4.6e-05 Score=55.59 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=57.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEECCCCCHHHHHHH---HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 899989857999999999879939999788-----886246325673708899999---999999842117821348754
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA-----GLGGICLNWGCIPTKSLLRSA---EILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~-----~~GGtC~~~GCiPsK~l~~~a---~~~~~~~~~~~~g~~~~~~~~ 78 (481)
|.||||||||-+||..||+.|.+..|+|++ ++|| .||=+++-+-. ++++ |+...+.+-.+.++.
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGG------AIPLCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~ 74 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGG------AIPLCMVDEFDLPRDIID--RRVTKMKMISPSNIA 74 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC------CCCCCCCCHHCCCHHHHH--CCCCEEEEECCCCHH
T ss_conf 889748974168999998503104633205678877888------644120101037866751--211022421641013
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 499999999999----999853446876301414210000
Q gi|254780675|r 79 FNIEDIVKRSRD----ISHRLNRGVEFLMHKNKVDIIWGK 114 (481)
Q Consensus 79 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~G~ 114 (481)
.|+...+..-.. -.+-|...++....+.|-+++.|.
T Consensus 75 ~d~gr~L~~~~yIgM~RREVLDsflR~RA~~~GA~li~Gl 114 (401)
T TIGR02028 75 VDIGRTLKEHEYIGMVRREVLDSFLRERAADAGATLINGL 114 (401)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCE
T ss_conf 3200027887612514578888999999986488141444
No 236
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.88 E-value=2.7e-05 Score=57.25 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=33.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEEC-CCCCEEE
Q ss_conf 4899989857999999999879--93999978-8886246
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG--FKVAIVEY-AGLGGIC 42 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G--~~V~liEk-~~~GGtC 42 (481)
.|+|||||-||++||.+|++.| .+|+|+|+ +++||-|
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i 41 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKI 41 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
T ss_conf 5999998789999999999649799789998899881038
No 237
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=0.00014 Score=51.96 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+.|+..|..++++|.+|+|||+.
T Consensus 177 ~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~ 207 (464)
T PRK05976 177 SLVVVGGGYIGLEWGSMLRKFGVEVTVVEAA 207 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 5999899689999999999539869999853
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.87 E-value=2.3e-06 Score=65.05 Aligned_cols=87 Identities=16% Similarity=0.305 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 4443215654332100023210133310000000012-------22--22221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
.+||+|||+|+-||=+|.+|+|.|++|++.+|.+++. |. +|+.+-..=++.|+..||+|++|++|=+ +
T Consensus 143 g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGr---D 219 (480)
T TIGR01318 143 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGR---D 219 (480)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEC---C
T ss_conf 8278997788602579998751785599974770307601368885110278999999999758927865816503---2
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 34310124403674021102322430574
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
|.++. ..=++|.||+-+|-
T Consensus 220 -----~~l~~-----LLe~YDAVFlGvGT 238 (480)
T TIGR01318 220 -----ISLDD-----LLEDYDAVFLGVGT 238 (480)
T ss_pred -----CCHHH-----HHHHCCEEEEECCC
T ss_conf -----55544-----43114848961143
No 239
>PRK12831 putative oxidoreductase; Provisional
Probab=97.86 E-value=2.5e-06 Score=64.76 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCC-CCCCCCCHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 4443215654332100023210133310000000012-------22--222-2122210012201233221001344202
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDS-EISQFVQRSLQKRGIKILTESKISSVKQ 257 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~-~~~~~~~~~l~~~Gv~i~~~~~v~~v~~ 257 (481)
.||++|||+|+-|+-.|..|+++|.+|||+|+.+++. |. +++ ++.+.-.+.+++.||+|++|+.+-.-
T Consensus 140 gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~~~GV~~~~n~~vG~d-- 217 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVIVGRT-- 217 (464)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC--
T ss_conf 998999897689999999999769917998278888980445168887667899999999998529389915742787--
Q ss_pred CCCCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 234310124403674021102322430574-220
Q gi|254780675|r 258 KGDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 258 ~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++.- .+.-.+|.|++|+|- .|+
T Consensus 218 ------is~~~L---~~~~~yDAV~la~Ga~~~r 242 (464)
T PRK12831 218 ------VTIDEL---LEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred ------CCHHHH---HHCCCCCEEEEECCCCCCC
T ss_conf ------679999---6356998899944888764
No 240
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.85 E-value=2.5e-05 Score=57.45 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
||+||||||+|+.+|+.+++.|.+|+|||+..
T Consensus 3 DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 29999966999999999985799699997899
No 241
>PRK06847 hypothetical protein; Provisional
Probab=97.85 E-value=3.2e-05 Score=56.74 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=33.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+..=.|+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 1 m~~~kkV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~ 37 (375)
T PRK06847 1 MGAVKKVLIVGGGIGGMSAAIALRKAGISVDLVEIDP 37 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9899879999966899999999996799999990899
No 242
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.85 E-value=2e-05 Score=58.14 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=43.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CC-CEEEEECCCCCE--EEEEECCCCCHHHHHH-HHHHHHH
Q ss_conf 643489998985799999999987-99-399997888862--4632567370889999-9999999
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQL-GF-KVAIVEYAGLGG--ICLNWGCIPTKSLLRS-AEILDHI 63 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~-G~-~V~liEk~~~GG--tC~~~GCiPsK~l~~~-a~~~~~~ 63 (481)
.+|||+|||||==||++|.+||+. |. +|+++||+-+|| |.=|.--|=|--|+.. +.++++.
T Consensus 29 ~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a 94 (407)
T TIGR01373 29 PEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHA 94 (407)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 854678886886068999998864694068998506216886643421465410264522378889
No 243
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.83 E-value=6.2e-06 Score=61.90 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=33.7
Q ss_pred CCCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9864--34899989857999999999879939999788
Q gi|254780675|r 1 MSRL--YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~--yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
||++ |||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus 1 m~~~~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~ 38 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999998899990699999999998669978999178
No 244
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=97.82 E-value=2.4e-05 Score=57.65 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC--CCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCC--CC
Q ss_conf 221222100122012332210013442022343--10124403674021102322430574220000232221123--57
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDM--VSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVK--TS 304 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~--~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~--~~ 304 (481)
+-+++.+.+.|+++|.+|+++.+|++|+...+. ..+......++...+.+|.|+...- ...| |+-++.+ ..
T Consensus 232 Q~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~~~~v~~~r~~~~~~~~A~d~V~~lP----pq~L-L~l~~~~~~~~ 306 (499)
T TIGR02733 232 QVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAGWVVVVDSRKQEDEQVKADDVVANLP----PQSL-LELLGSELALP 306 (499)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCEEECC----HHHH-HHHCCCCCCCC
T ss_conf 357899999998679879860023234431684156887416411467744203120077----4116-87668766666
Q ss_pred CEEEEECCCCE-EECC-C---CEEE-------CCCCCCCCCCCCCCCCHHHHHHHHCCCCC------CCCCCCCCCEEEE
Q ss_conf 32664248742-3025-8---5883-------04445532444123202555543024664------4321223200245
Q gi|254780675|r 305 NGCIIVDGYGR-TNVP-G---IYAI-------GDVAGAPMLAHKAEHEGIICIEKIAGKSK------VYPLDKSKIPGCT 366 (481)
Q Consensus 305 ~g~i~vd~~~q-Ts~p-~---IyA~-------GDv~g~~~l~~~A~~qg~~aa~~i~~~~~------~~~~d~~~ip~~v 366 (481)
.++- +.++ ...| | +|-+ =||.++.++.. ..+|=++=||=+--.= +.|.=+.++-+-+
T Consensus 307 ~~Yr---~Rl~~LP~pSGA~V~Y~gvk~~alP~~cp~HlQf~~--D~~GP~gENNSLFVSiS~egDGRAP~G~~TlIAS~ 381 (499)
T TIGR02733 307 PGYR---KRLKKLPEPSGAFVLYLGVKRAALPVDCPPHLQFLS--DHQGPIGENNSLFVSISQEGDGRAPAGEATLIASS 381 (499)
T ss_pred HHHH---HHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCEEEC--CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 1479---999727788972886000133337777878604500--78888200364027865786888775753678742
Q ss_pred EEEHHHEEECCCHHHHHCC
Q ss_conf 4303340001496876107
Q gi|254780675|r 367 YCNPQVASIGLTEEKARSQ 385 (481)
Q Consensus 367 ft~P~ia~vG~te~ea~~~ 385 (481)
|||.. .+.=+.+++-.+.
T Consensus 382 FTd~~-~W~~l~~~~Y~~~ 399 (499)
T TIGR02733 382 FTDVA-DWSSLDEEDYTAK 399 (499)
T ss_pred CCCCH-HHCCCCHHHHHHH
T ss_conf 13712-2117726789999
No 245
>PRK07588 hypothetical protein; Provisional
Probab=97.82 E-value=4.3e-06 Score=63.07 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+|||||+||+++|+.|++.|.+|+|+|+.+
T Consensus 3 VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~ 33 (391)
T PRK07588 3 IAISGAGIAGATLAHWLQRTGHEPTLIERAP 33 (391)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999932899999999986899989990389
No 246
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.81 E-value=0.00019 Score=51.13 Aligned_cols=95 Identities=26% Similarity=0.403 Sum_probs=61.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 89998985799999999987993999978-88862463256737088999999999998421178213487544999999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIV 85 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (481)
++|||||-=|+..|.-.+++|.+|+|||- +++ - +.+|
T Consensus 181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI-----------------------------------L--p~~D----- 218 (481)
T TIGR01350 181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI-----------------------------------L--PGED----- 218 (481)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-----------------------------------C--CCCC-----
T ss_conf 699878667788999998539808999457500-----------------------------------3--5431-----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-EEEECCCCCC-----CCCCCCC--CCCCCCCCCCCCCCCCCCCCCC-EEEEEEEEEE
Q ss_conf 9999999985344687630141-4210000011-----2222100--2368752001355554322586-3899724552
Q gi|254780675|r 86 KRSRDISHRLNRGVEFLMHKNK-VDIIWGKATL-----KNPSEIT--VSKPSQPAVQPQHPIPKKVLGE-GTYKAKHIII 156 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-v~~~~G~a~f-----~~~~~v~--v~~~~~~~~~~~~~~~~~~~~~-~~~~a~~ivI 156 (481)
...++.+...|++.| |+++.++-.- .+.+.|+ +...+ .++ .++++|++++
T Consensus 219 -------~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g--------------~ge~~~~~~e~vLv 277 (481)
T TIGR01350 219 -------AEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEG--------------KGEVETLTAEKVLV 277 (481)
T ss_pred -------HHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECC--------------CCCEEEEEEEEEEE
T ss_conf -------689999999997449849854854423357752878999999879--------------98058898739999
Q ss_pred CCCCCCCC
Q ss_conf 57543111
Q gi|254780675|r 157 ATGARPRH 164 (481)
Q Consensus 157 ATGs~p~~ 164 (481)
|.|-+|+.
T Consensus 278 avGR~pn~ 285 (481)
T TIGR01350 278 AVGRKPNT 285 (481)
T ss_pred EECCCCCC
T ss_conf 84243476
No 247
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.81 E-value=1.3e-05 Score=59.60 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCHHHHHC-CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 210012201-233221001344202234310124403674021102322430574220000
Q gi|254780675|r 234 FVQRSLQKR-GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 234 ~~~~~l~~~-Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
.+.+.++.. +|+++.++++++++.+++.+.++++..+ ..+++.+++|+-|=|..-.+..
T Consensus 125 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~-~~~~i~a~llIgaDG~~S~VR~ 184 (413)
T PRK07364 125 ALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAG-QLQTLQSKLVVAADGARSPIRQ 184 (413)
T ss_pred HHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCC-CEEEEEEEEEEEECCCCCHHHH
T ss_conf 99999984899489828779999976983699998299-1389985689993188850035
No 248
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.80 E-value=4.4e-05 Score=55.69 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 34899989857999999999879939999788
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-+|+||||||+|+.+|..|++.|.+++|+|+.
T Consensus 3 t~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~ 34 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 88999997799999999999779988999768
No 249
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.79 E-value=1.8e-05 Score=58.61 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+-|+-.|..|++.|..||+.++.++.. | ..+.++.+...+.|++.|++|+.++++-.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----- 198 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----- 198 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC-----
T ss_conf 679998889515558899986898799826667774479814844646420689999999874909998667799-----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
.++++. ..-+.|.|++++|. .|+
T Consensus 199 ---~it~~~-----L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 199 ---DITLEE-----LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred ---CCCHHH-----HHHHHCEEEEECCCCCCC
T ss_conf ---678999-----865328799932667887
No 250
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=0.00018 Score=51.22 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+.|+..|..++++|.+|+|||+.
T Consensus 159 ~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~ 189 (438)
T PRK07251 159 RLGILGGGNIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 6999888645889999998348768999846
No 251
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.78 E-value=3.6e-05 Score=56.35 Aligned_cols=65 Identities=25% Similarity=0.450 Sum_probs=43.8
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEECCC--CEEEEECCCEEECCCCEEEEECCCCC
Q ss_conf 22100122012332210013442022343-1012440367--40211023224305742200002322
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERKDG--SVSSMQAEKLLLSAGVQGNIENIGLE 297 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG--~~~~i~~D~vl~a~Gr~Pn~~~L~Le 297 (481)
.++...++..++.+++++.++++..+++. ..+++...++ .......+.|+++.|...+..-|-+.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~S 274 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLS 274 (542)
T ss_pred CCCHHHHHCCCCEEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEECCCEEEECCCCCCCHHHHHHC
T ss_conf 05466750898389637889999998986899999968986336885178799856763799999866
No 252
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.77 E-value=0.00017 Score=51.50 Aligned_cols=36 Identities=47% Similarity=0.755 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 34899989857999999999879939999788-8862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
-+++|||+|+.|+.+|..+++.|++|+++|+. ++||
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 7399989349999999999877993899975664233
No 253
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.76 E-value=7.6e-06 Score=61.25 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------22--222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+-|+-.|..|+++|.+||+.|+.+++. |. .++++.+.-.+.+++.||+|+++.. ++
T Consensus 538 kKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f~tnvg-----~d- 611 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCS-----PD- 611 (1012)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC-----CC-
T ss_conf 889998977899999999997799569981589788547855887778999999999999968969997998-----88-
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEEEECCCCCCCCCCCCCEEEEECCCCEEE--CCCCEEECC---CCCCCCC
Q ss_conf 4310124403674021102322430574-220000232221123573266424874230--258588304---4455324
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGNIENIGLEKIGVKTSNGCIIVDGYGRTN--VPGIYAIGD---VAGAPML 333 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn~~~L~Le~~gi~~~~g~i~vd~~~qTs--~p~IyA~GD---v~g~~~l 333 (481)
++++ +.+.-.+|.|++|+|- +|. .|+++. + ..|.+.--++|+.. .+.....|. |+|+-.
T Consensus 612 ----itle----eL~~egYDAVfLa~GA~~~r--~L~IpG---d-~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGN- 676 (1012)
T TIGR03315 612 ----LTVA----ELKNQGYKYVILAIGAWKHG--PLRLEG---G-GERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGN- 676 (1012)
T ss_pred ----CCHH----HHHHCCCCEEEEECCCCCCC--CCCCCC---C-CCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCH-
T ss_conf ----8899----99658999999956899887--799997---6-5685867999997211799656899589989847-
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 4412320255554
Q gi|254780675|r 334 AHKAEHEGIICIE 346 (481)
Q Consensus 334 ~~~A~~qg~~aa~ 346 (481)
+|+.-++.|.+
T Consensus 677 --TAMDcARTAlR 687 (1012)
T TIGR03315 677 --TAMDAARAALR 687 (1012)
T ss_pred --HHHHHHHHHHH
T ss_conf --99999999875
No 254
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=0.00029 Score=49.72 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||+-|+..|-.++++|.+|+|||+..
T Consensus 160 ~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 79998985899999999997598788970467
No 255
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.74 E-value=8.3e-06 Score=60.97 Aligned_cols=100 Identities=21% Similarity=0.440 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCC--CCCCCCEECCCCCC--CC---------CCCCCCCCCCHHHHHCC-CCCCCCHHHH
Q ss_conf 44432156543321000232101--33310000000012--22---------22221222100122012-3322100134
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSL--DVDVSLIEVKDRIL--PV---------EDSEISQFVQRSLQKRG-IKILTESKIS 253 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~l--G~~Vtli~~~~~ll--~~---------~d~~~~~~~~~~l~~~G-v~i~~~~~v~ 253 (481)
.++++|+|||+-|++.+.-|.+. +.++|+|++++..+ |. .+.+++--+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE
T ss_conf 7569998986799999997641678871899918876666303355632877756521308998423574489997-899
Q ss_pred HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf 42022343101244036740211023224305742200002
Q gi|254780675|r 254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
.|..+.. .|++.. ..++.+|++++|+|-.||+-+.
T Consensus 82 ~ID~~~k--~V~~~~----~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK--KVTLAD----LGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EECCCCC--EEEECC----CCCCCCCEEEEECCCCCCCCCC
T ss_conf 9715679--899578----8702363899945876676899
No 256
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.74 E-value=9e-06 Score=60.72 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------22--222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+-|+-.|..|++.|.+||+.|+.+++. |. .++++.+.-.+.+++.||+|++|. .++
T Consensus 551 KKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnv-----g~d- 624 (1032)
T PRK09853 551 HPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGC-----SPD- 624 (1032)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECC-----CCC-
T ss_conf 97999896889999999999779936998158978842673588767899999999999997796999699-----998-
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEEEECCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf 4310124403674021102322430574-22000023222112357326642487423
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGNIENIGLEKIGVKTSNGCIIVDGYGRT 316 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn~~~L~Le~~gi~~~~g~i~vd~~~qT 316 (481)
++++ +.+.-.+|.|++|+|- +|. .|+++.- +.|.+.-.++|+.
T Consensus 625 ----itle----~L~~eGyDAVfLa~GA~~~r--~L~IpGe----~~gV~~AleFL~~ 668 (1032)
T PRK09853 625 ----LTVE----QLKNQGYHYVLLAIGADKNG--GLKLAGD----NQNVWKSLPFLRE 668 (1032)
T ss_pred ----CCHH----HHHHCCCCEEEEECCCCCCC--CCCCCCC----CCCEEEHHHHHHH
T ss_conf ----8899----99657999999945889888--7999986----5780777999998
No 257
>PRK07538 hypothetical protein; Provisional
Probab=97.74 E-value=4.5e-05 Score=55.64 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAP 33 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89999905899999999997899989993699
No 258
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=2.2e-05 Score=57.89 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+.|+..|..++++|.+|+|||+.
T Consensus 176 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~ 206 (472)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF 206 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 5999956472899999998529868999604
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00022 Score=50.69 Aligned_cols=31 Identities=39% Similarity=0.563 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||+|+-|+..|..++++|.+|+|||+.
T Consensus 172 ~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~ 202 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMA 202 (458)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 5999899747999999999659879999844
No 260
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=0.00024 Score=50.34 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+..|..++++|.+|+|||+.
T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~ 204 (462)
T PRK06416 174 SLVVIGGGYIGIEFASAYASLGAEVTIIEAL 204 (462)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 6999889787889999999739768997405
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.72 E-value=4.7e-06 Score=62.74 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+.|+-.|..|+++|.+||+.|+.+++. | +.++++.+.-.+.+++.||+|++|+.+-+-
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkd---- 515 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKT---- 515 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC----
T ss_conf 9899989778999999999977990699805888897576548611087899999999998649799899577886----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++. .+.-.+|.|++++|- .|+
T Consensus 516 ----it~~e----L~~egyDAVfla~Ga~~pr 539 (760)
T PRK12778 516 ----ISVEE----LEEEGFKGIFVASGAGLPN 539 (760)
T ss_pred ----CCHHH----HHHCCCCEEEEECCCCCCC
T ss_conf ----89999----9758899999940678775
No 262
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.72 E-value=5.5e-05 Score=55.03 Aligned_cols=35 Identities=37% Similarity=0.648 Sum_probs=32.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 4899989857999999999879939999788-8862
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
+|+|||+|+||++||..+++.|.+|+++||+ .+||
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 479975636889999999866957999973887553
No 263
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.72 E-value=0.0005 Score=48.06 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++|||||+-|+..|-..+++|.+|+|||+..
T Consensus 176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~~ 206 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9998988899999999998699789994688
No 264
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.71 E-value=0.00024 Score=50.35 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+.|+..|..++++|.+|+|||+.
T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~ 204 (467)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL 204 (467)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 6999998799999999998329877776211
No 265
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.71 E-value=0.00027 Score=49.97 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+..|..++++|.+|+|||+.
T Consensus 185 ~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~ 215 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEAL 215 (475)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 7999967475899999999549859999853
No 266
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=7.9e-06 Score=61.12 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC----CC-----CCCCCCCCCHHHHHCCCCCCCCHHHHHHCC--
Q ss_conf 4432156543321000232101333100000000122----22-----222122210012201233221001344202--
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP----VE-----DSEISQFVQRSLQKRGIKILTESKISSVKQ-- 257 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~----~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~-- 257 (481)
|+++|||+|+-|+-.|..++++|.+|+|+|+.+.... .. +.+......+.+++.|++++++..+.....
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~~ 97 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPPH 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCEE
T ss_conf 98999995588999999999789985999536969828998347976668899999999997097697320998502011
Q ss_pred --CCCCCCEEEEECCCCEEEEECCCEEECCCC-EEEE
Q ss_conf --234310124403674021102322430574-2200
Q gi|254780675|r 258 --KGDMVSVQVERKDGSVSSMQAEKLLLSAGV-QGNI 291 (481)
Q Consensus 258 --~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn~ 291 (481)
.++..... ..+.+....++|.|++|+|. +|+.
T Consensus 98 ~~~~~~~~~~--~~~~~~~~~~~daviiAtG~~~~r~ 132 (350)
T PRK12770 98 EEEGDEFVED--FVSLEELVEEYDAVLIATGTWKSRK 132 (350)
T ss_pred EEECCEEEEE--EEEHHHHHHHCCEEEEECCCCCCCC
T ss_conf 3303203577--6018987741899999658997735
No 267
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.68 E-value=0.00045 Score=48.38 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||.-|+..|..++++|.+|+|||+.
T Consensus 180 ~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~ 210 (467)
T PRK07845 180 HLIVVGSGVTGAEFASAYTELGVKVTLVSSR 210 (467)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 6999898799999999999739879999955
No 268
>PRK05868 hypothetical protein; Validated
Probab=97.68 E-value=7.6e-05 Score=53.98 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCEEEEE
Q ss_conf 9864348999898579999999998799399997888---8624632
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG---LGGICLN 44 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~---~GGtC~~ 44 (481)
|.+ |+|+|||+||+++|+.|++.|.+|+|+|+.+ -+|.-+.
T Consensus 1 ~~k---VlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~ 44 (372)
T PRK05868 1 MKT---VLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAID 44 (372)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE
T ss_conf 999---99989888999999999858998899957999888996674
No 269
>PRK07236 hypothetical protein; Provisional
Probab=97.68 E-value=8e-05 Score=53.82 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 34899989857999999999879939999788
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-.|+|||||+||+++|+.|++.|.+|+|+||.
T Consensus 7 ~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~ 38 (386)
T PRK07236 7 PRAVVVGGSLGGLFAANLLRRAGWDVDVFERS 38 (386)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 96899993689999999998589998998689
No 270
>PRK06185 hypothetical protein; Provisional
Probab=97.67 E-value=1.4e-05 Score=59.22 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=40.1
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCC-EEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 01233221001344202234310-124403674021102322430574220000
Q gi|254780675|r 241 KRGIKILTESKISSVKQKGDMVS-VQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 241 ~~Gv~i~~~~~v~~v~~~~~~~~-v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
..+++++++++++++..+++.+. |++...||+. ++.+|+|+-|=|+.-.+..
T Consensus 121 ~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg~~-~i~adlvVGADG~~S~VR~ 173 (409)
T PRK06185 121 YPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDGEL-EIRADLTVGADGRHSRVRE 173 (409)
T ss_pred CCCCEEEECCEEEEEEEECCCEEEEEEECCCCCE-EEEEEEEEECCCCCCHHHH
T ss_conf 8995999688889999959908999998489858-9997299973899847899
No 271
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.66 E-value=5.6e-05 Score=54.94 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6434899989857999999999879939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.+||+||||||=|||-||+.+++.|+++++|=|=
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKl 34 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKL 34 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9422798868756899999863279238898313
No 272
>PRK06116 glutathione reductase; Validated
Probab=97.66 E-value=0.00037 Score=48.96 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+..|..++++|.+|+||++.
T Consensus 169 ~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~ 199 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLHGLGSETHLFVRG 199 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 7999999666999999999609848999944
No 273
>PRK06753 hypothetical protein; Provisional
Probab=97.66 E-value=6.9e-05 Score=54.28 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 3 V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~ 33 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHTVKVFEKNE 33 (373)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999945899999999997799999988899
No 274
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00025 Score=50.29 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+..|..++++|.+|+|||+.
T Consensus 176 ~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~ 206 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 7999958589999999998619847899833
No 275
>KOG2820 consensus
Probab=97.65 E-value=0.00067 Score=47.13 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=35.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|.+..|++|||+|-=|+++|..|++.|.+++|+|+.++
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf 24651699986640000889999865770798733677
No 276
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=8.8e-05 Score=53.54 Aligned_cols=37 Identities=35% Similarity=0.565 Sum_probs=34.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEE
Q ss_conf 89998985799999999987993999978-88862463
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICL 43 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~ 43 (481)
|+|.|||-||++||.+|+++|.+|+|.|. +.+||-|-
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 89974627888999999868985399842676686131
No 277
>PRK06370 mercuric reductase; Validated
Probab=97.63 E-value=0.00045 Score=48.37 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||..|+..|..++++|.+|+|||+.+
T Consensus 172 ~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~ 203 (459)
T PRK06370 172 HLAVIGGGYIGLEFAQAFRRFGSEVTVVERGP 203 (459)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 49998984779999999996398899999657
No 278
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.63 E-value=3.1e-05 Score=56.78 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=28.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.++|||||+-|+..|..++++|.+|+|||+.
T Consensus 178 ~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~ 208 (465)
T PRK05249 178 SLIIYGAGVIGCEYASIFRGLGVKVDLINTR 208 (465)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEEECC
T ss_conf 5999999821799999999609877897216
No 279
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.59 E-value=0.00065 Score=47.21 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=21.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-++|||||+-|+..|--.+++|.+|+|++++
T Consensus 224 ~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~ 254 (541)
T PTZ00052 224 KTLVVGASYVALECAGFLNSLGFDVTVAVRS 254 (541)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 2899898699999999999759858999537
No 280
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.58 E-value=0.00092 Score=46.12 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||+-|+..|-.++++|.+|+|||+..
T Consensus 170 ~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~ 201 (453)
T PRK07846 170 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSD 201 (453)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 49998997579999999995299268997465
No 281
>PTZ00318 NADH dehydrogenase; Provisional
Probab=97.57 E-value=2.8e-05 Score=57.18 Aligned_cols=103 Identities=19% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC--CCC---------CCCCCCCCCHH---HHHCCCCCCCCHHHHH
Q ss_conf 443215654332100023210133310000000012--222---------22212221001---2201233221001344
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL--PVE---------DSEISQFVQRS---LQKRGIKILTESKISS 254 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~---l~~~Gv~i~~~~~v~~ 254 (481)
++++|+|||+-|+.+|.-|.+-..+|+||.+.+.++ |.. .+++..-+.+. +.+.+.+++. ..+..
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~lF~PLL~qvAtGtLe~r~I~~Pir~i~~~~~~~~~~f~~-~~v~~ 89 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHMVFTPLLPQTTTGTLEFRSVCEPITRIQPALAKLPNRFLR-CVVYD 89 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCEEEE-EEEEE
T ss_conf 85899997699999999738689828999999985010216766205777577222178876765136745999-99988
Q ss_pred HCCCCCCCCEE-EEECCC------CEEEEECCCEEECCCCEEEEE
Q ss_conf 20223431012-440367------402110232243057422000
Q gi|254780675|r 255 VKQKGDMVSVQ-VERKDG------SVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 255 v~~~~~~~~v~-~~~~dG------~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
|..+...+.+. ....++ +..++++|++++|+|-++|+-
T Consensus 90 ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~F 134 (514)
T PTZ00318 90 VNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTF 134 (514)
T ss_pred EEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCC
T ss_conf 712107899974012466544445663642887898678655678
No 282
>KOG2404 consensus
Probab=97.56 E-value=0.00021 Score=50.84 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=33.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEE
Q ss_conf 4899989857999999999879939999788-8862463
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICL 43 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~ 43 (481)
-|+|||+|-||++|+..+-..|-.|+|+||. .+||..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCE
T ss_conf 079987740323567778744875999824677677520
No 283
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=97.56 E-value=4.8e-05 Score=55.46 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCC
Q ss_conf 3444321565433210002321013331000000001
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRI 223 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~l 223 (481)
.|++++|||||..|+=.|..|++.|.+|||+++.+.+
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~ 291 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 291 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8871899893899999999999789968999479875
No 284
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.55 E-value=0.00013 Score=52.34 Aligned_cols=38 Identities=26% Similarity=0.544 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC---CCEEEE
Q ss_conf 489998985799999999987--99399997888---862463
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL--GFKVAIVEYAG---LGGICL 43 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~~---~GGtC~ 43 (481)
||+|||||+||++.|.++.+. +++|+|||+.+ ......
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~t 43 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHT 43 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9899995299999999997408998199997898888899838
No 285
>PRK06753 hypothetical protein; Provisional
Probab=97.55 E-value=1.7e-05 Score=58.72 Aligned_cols=56 Identities=11% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 22210012201233221001344202234310124403674021102322430574220000
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
.+.+.+.+.+. .++++.++++++.+++++.++++ ||+ +.++|.|+-|=|..-.+..
T Consensus 101 ~~~L~~~~~~~--~i~~~~~~~~i~~~~~~v~v~~~--dg~--~~~~DlvVGADG~~S~vR~ 156 (373)
T PRK06753 101 IDIIKSYVKED--TIFTNHEVTKIENETDKVTIHFA--EQE--SEAFDLCIGADGIHSVVRQ 156 (373)
T ss_pred HHHHHHHCCCC--EEEECCEEEEEEEECCEEEEEEC--CCC--EEEEEEEEECCCCCCHHHH
T ss_conf 99998747458--79958899999930998999987--997--9888799974887767888
No 286
>PRK07588 hypothetical protein; Provisional
Probab=97.54 E-value=0.00013 Score=52.21 Aligned_cols=59 Identities=8% Similarity=0.338 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf 1222100122012332210013442022343101244036740211023224305742200002
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
+.+.+.+.++ .+++++++.++++++.+++++.+++ .||+ +.++|.|+-|=|..-.+..+
T Consensus 105 L~~~L~~~~~-~~v~v~~g~~v~~i~~~~dgV~v~f--~dG~--~~~~DlvVGADGi~S~vR~~ 163 (391)
T PRK07588 105 LAATIYTTIE-GQVETIFDDSIATIDEHRDGVRLTL--ERGT--PRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHHCC-CCCEEEECCEEEEEEECCCEEEEEE--CCCC--EEEEEEEEECCCCCCHHHHH
T ss_conf 9999997514-4878997999999996299589998--7998--88875999548764077787
No 287
>PRK10262 thioredoxin reductase; Provisional
Probab=97.54 E-value=2.7e-05 Score=57.24 Aligned_cols=96 Identities=16% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCC---CCC--------CCCCC-----CCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 443215654332100023210133310000000---012--------22222-----21222100122012332210013
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKD---RIL--------PVEDS-----EISQFVQRSLQKRGIKILTESKI 252 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~---~ll--------~~~d~-----~~~~~~~~~l~~~Gv~i~~~~~v 252 (481)
-+++|||||+.|+=.|-.+++.|.++.+++..+ ++. |.++. ++.+.+.++..+.++++..+ ++
T Consensus 7 ~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~i~n~pg~~~~i~G~~l~~~~~~q~~~~~~~i~~~-~v 85 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HI 85 (321)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC-CC
T ss_conf 00999997689999999999869967999605968742005603561788876477999999999999708748941-23
Q ss_pred HHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf 44202234310124403674021102322430574220
Q gi|254780675|r 253 SSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGN 290 (481)
Q Consensus 253 ~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn 290 (481)
..++..++...++. .+| ++.++.|++|+|..|+
T Consensus 86 ~~i~~~~~~f~v~t--~~g---~~~a~aViiAtG~~~r 118 (321)
T PRK10262 86 NKVDLQNRPFRLTG--DSG---EYTCDALIIATGASAR 118 (321)
T ss_pred CEEEEECCCEEEEC--CCC---EEEEEEEEEEECCCCC
T ss_conf 15774036519975--898---8999899996468655
No 288
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.51 E-value=0.00034 Score=49.28 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred CCCCCHHHHH-CCCCCCCCHHHHHHCCCCCC-CCEEEEE-CCCCEEEEECCCEEECCCCEEEEECCC-CCCCCCCCCC--
Q ss_conf 2221001220-12332210013442022343-1012440-367402110232243057422000023-2221123573--
Q gi|254780675|r 232 SQFVQRSLQK-RGIKILTESKISSVKQKGDM-VSVQVER-KDGSVSSMQAEKLLLSAGVQGNIENIG-LEKIGVKTSN-- 305 (481)
Q Consensus 232 ~~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~-~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~~L~-Le~~gi~~~~-- 305 (481)
.+.+.+.|.+ .+++++++++|+.++++.++ ..|++.+ .+|..+++.++.|++..|-- .|. |.+.||.-.+
T Consensus 190 T~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG~----aL~LLQksgI~E~~gy 265 (499)
T PRK05257 190 TRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGGG----ALPLLQKSGIPEAKGY 265 (499)
T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCCH----HHHHHHHCCCCHHCCC
T ss_conf 999999997589838993688756088899987999998788972799825699888814----5788988399231275
Q ss_pred -EEEEECCCCEEECCC
Q ss_conf -266424874230258
Q gi|254780675|r 306 -GCIIVDGYGRTNVPG 320 (481)
Q Consensus 306 -g~i~vd~~~qTs~p~ 320 (481)
|+++--.+|++++|.
T Consensus 266 gGFPVsG~~L~c~npe 281 (499)
T PRK05257 266 GGFPVSGQFLVCENPE 281 (499)
T ss_pred CCCCCCCEEEECCCHH
T ss_conf 6676045688339989
No 289
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.51 E-value=0.00016 Score=51.65 Aligned_cols=35 Identities=40% Similarity=0.661 Sum_probs=32.9
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEEC-CCCCEE
Q ss_conf 899989857999999999879--93999978-888624
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLG--FKVAIVEY-AGLGGI 41 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G--~~V~liEk-~~~GGt 41 (481)
++|||||.+|++||.+|++.+ ..++|+|+ +++||.
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCE
T ss_conf 99987828889999999985899867998348877865
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.50 E-value=1.9e-05 Score=58.43 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+-||-.|+-+++.|-+||+.|..++.. | ++|+++.+.=.+.|++.||+|+++.-|=+
T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvGk----- 217 (462)
T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVGK----- 217 (462)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECC-----
T ss_conf 779998468214688999974798699997148998567536888548757889888876326637994437505-----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
.+|++. -.+..-+|.||+++|- .|.
T Consensus 218 ---t~TL~e---L~~~YGfDAVFIgtGAG~pk 243 (462)
T TIGR01316 218 ---TVTLEE---LLEKYGFDAVFIGTGAGLPK 243 (462)
T ss_pred ---CHHHHH---HHHHCCCCEEEEEECCCCCE
T ss_conf ---112888---88751970799950689870
No 291
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.49 E-value=0.00013 Score=52.30 Aligned_cols=82 Identities=24% Similarity=0.388 Sum_probs=53.4
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC--CCCCEEEEECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 1000000001222222212221001220123322100134420223--43101244036740211023224305742200
Q gi|254780675|r 214 VSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKG--DMVSVQVERKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 214 Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~--~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
|-|++...-+|. .....+.+++....+|-.++.+++|.+++.++ .+..|+++... .+..+..++++.| |=+
T Consensus 135 ~g~~~~~gGvl~--~~ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~---~sy~a~~lvvtaG--aW~ 207 (401)
T TIGR01377 135 VGLLDELGGVLY--AEKALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVKTTK---DSYQAKKLVVTAG--AWT 207 (401)
T ss_pred EEEEECCCCEEC--HHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEEEEC---CEEECCEEEEECC--CCH
T ss_conf 788746887462--278999999999874968734860366542676789548999727---7032135789538--861
Q ss_pred -ECCCCCCCC-CCC
Q ss_conf -002322211-235
Q gi|254780675|r 292 -ENIGLEKIG-VKT 303 (481)
Q Consensus 292 -~~L~Le~~g-i~~ 303 (481)
..| |..++ |++
T Consensus 208 s~kL-l~~l~Gie~ 220 (401)
T TIGR01377 208 SNKL-LKKLGGIEL 220 (401)
T ss_pred HHHH-CCCCCCEEC
T ss_conf 2343-130142326
No 292
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.48 E-value=3.5e-05 Score=56.44 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
+|+|||||.+++..|..+++.+.+|+||.+.
T Consensus 145 ~V~VIGGG~~A~EeA~~Ls~~askVtII~r~ 175 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6999838889999999999748908999978
No 293
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.46 E-value=2.2e-05 Score=57.94 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+.|+-.|..|+++|.+||+.++.+++. | +.++++.+.=.+.|++.||+|++|+.+-+-
T Consensus 433 gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~VGkd---- 508 (993)
T PRK12775 433 GKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVVGKT---- 508 (993)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEECCC----
T ss_conf 8089978378899999999977996489716888997268437776788899999999998789499838886560----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
++++.- ..+-.+|.|++++|- .|+
T Consensus 509 ----itl~eL---~~e~gyDAVFIg~GA~~~~ 533 (993)
T PRK12775 509 ----FTIPQL---MNDRGFDAVFVAAGAGAPT 533 (993)
T ss_pred ----CCHHHH---HHCCCCCEEEEECCCCCCC
T ss_conf ----789999---5345989899955878673
No 294
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.46 E-value=0.0015 Score=44.56 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||+.|+..|..++++|.+|+|||+..
T Consensus 171 ~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69999986788799999984698699996247
No 295
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.43 E-value=0.00028 Score=49.90 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=32.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEEC-CCCCE
Q ss_conf 98643489998985799999999987------993999978-88862
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQL------GFKVAIVEY-AGLGG 40 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~------G~~V~liEk-~~~GG 40 (481)
|.+ |+|||||-+|+++|.+|.++ +.+|+|+|+ +++||
T Consensus 1 Mk~---vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG 44 (466)
T PRK12416 1 MKT---VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (466)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 975---99989978999999999872555589986799977998867
No 296
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.42 E-value=0.0012 Score=45.16 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||||+-|+..|-.++++|.+|+|||+.+
T Consensus 171 ~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~ 202 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69998886899999999996199499999676
No 297
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=5e-05 Score=55.29 Aligned_cols=99 Identities=11% Similarity=0.361 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECC--CCCC--------CCC----CCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 444321565433210002321013331000000--0012--------222----22212221001220123322100134
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVK--DRIL--------PVE----DSEISQFVQRSLQKRGIKILTESKIS 253 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 253 (481)
|=.++|||||+-|+-.|-..+|.|.++-++..+ .++. |.+ -+++.+.+.++.++.|++++....+.
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699
Q ss_pred HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf 4202234310124403674021102322430574220
Q gi|254780675|r 254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGN 290 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn 290 (481)
.++..++...+.. .+| +.+.+..|++|+|.+|.
T Consensus 292 ~i~~~~~~~~v~~--~~g--~~~~aktVIiATGa~~r 324 (515)
T TIGR03140 292 KIETEDGLIVVTL--ESG--EVLKAKSVIVATGARWR 324 (515)
T ss_pred EEECCCCCEEEEE--CCC--CEEEECEEEECCCCCCC
T ss_conf 9972798189998--799--89993979995698735
No 298
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.40 E-value=9.5e-05 Score=53.29 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 12221001220123322100134420223431012440367402110232243057422000
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+.+++.+...+++..++.++.+++.+.+++ .||+ ++.+|+|+-|=|..-.+.
T Consensus 111 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~--~i~a~llIgADG~~S~vR 168 (386)
T PRK07494 111 LNRALEARAAELPNIDRFDDEAESVRPRGDEVTVTL--ADGT--TLSARLVVAADGRNSPAR 168 (386)
T ss_pred HHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEE--CCCC--EEEEEEEEEECCCCCCCC
T ss_conf 999999999718997997770689996698489997--8996--999869999058887431
No 299
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.40 E-value=8.4e-05 Score=53.67 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=31.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECC
Q ss_conf 986434899989857999999999879---939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLG---FKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G---~~V~liEk~ 36 (481)
|+ +|||+||||||+|+++|+.|+++| .+|+|||+.
T Consensus 1 M~-~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~ 38 (395)
T PRK05732 1 MS-RMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAF 38 (395)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 97-189899993899999999999618899749999378
No 300
>KOG1399 consensus
Probab=97.39 E-value=9.1e-05 Score=53.43 Aligned_cols=106 Identities=14% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCC----------------------------------C-----
Q ss_conf 4443215654332100023210133310000000012222----------------------------------2-----
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVE----------------------------------D----- 228 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~----------------------------------d----- 228 (481)
+++++|||+|+.|+=.|-.+.+-|.+|++.||.+.+...+ +
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 78548978566888999999877998369970587454586057656554324342104688444257998975457111
Q ss_pred ----CCCCCCCCHHHHHCCC--CCCCCHHHHHHCCCC-CCCCEEEEECCCCEEEEECCCEEECCCCE--EEEEC
Q ss_conf ----2212221001220123--322100134420223-43101244036740211023224305742--20000
Q gi|254780675|r 229 ----SEISQFVQRSLQKRGI--KILTESKISSVKQKG-DMVSVQVERKDGSVSSMQAEKLLLSAGVQ--GNIEN 293 (481)
Q Consensus 229 ----~~~~~~~~~~l~~~Gv--~i~~~~~v~~v~~~~-~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~--Pn~~~ 293 (481)
.++-+++....+.-++ .|.+++++.+++... +...|......+...+-.+|.|++|+|-. |++..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 78888999999999873583462673465799840567741689814886405899638999556768898876
No 301
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.38 E-value=7.4e-05 Score=54.05 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=37.0
Q ss_pred CCHHHHHCCCCCCCCHHHHHHCC-CCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 10012201233221001344202-23431012440367402110232243057422000
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSVKQ-KGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v~~-~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.....|..++++.+..+++. +++...|++. .||+..++.||+|+-|=|.+-.+.
T Consensus 109 L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~-~dG~~~~l~a~yvVGcDG~~S~vR 166 (392)
T PRK08243 109 LMAAREAAGGPIVFEASDVALHDFDGDRPYVTYT-KDGETHRIDCDFIAGCDGFHGVSR 166 (392)
T ss_pred HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEE-CCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 9999997699799905999999569982599994-499379999846751688987520
No 302
>KOG4254 consensus
Probab=97.37 E-value=0.00032 Score=49.46 Aligned_cols=48 Identities=33% Similarity=0.520 Sum_probs=43.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCC
Q ss_conf 6434899989857999999999879939999788-88624632567370
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPT 50 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPs 50 (481)
..||++|||+|..|+.||.++++.|.+|++.|+. ..||..+..--||-
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEHHCCC
T ss_conf 6546699658866344789997538606999986304763201000365
No 303
>PRK07236 hypothetical protein; Provisional
Probab=97.36 E-value=6.4e-05 Score=54.55 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 233221001344202234310124403674021102322430574220000
Q gi|254780675|r 243 GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+..++++.++++++.+++++.+++ .||+ ++++|.|+-|=|..-.+..
T Consensus 112 ~~~i~~g~~v~~v~~~~~~v~v~~--~dG~--~~~adlvVGADG~~S~vR~ 158 (386)
T PRK07236 112 AEHYHAGEALERVEQDGDRVTAHF--ADGR--EETADLLIGADGGRSAVRA 158 (386)
T ss_pred CCEEEECCEEEEEEEECCEEEEEE--CCCC--EEEEEEEEECCCCCCCHHH
T ss_conf 988995999999998299799998--7998--8776289965887751588
No 304
>PRK08774 consensus
Probab=97.34 E-value=0.00016 Score=51.61 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCHHHHHC-CCCCCCCHHHHHHCCCCCC-CCEEEEECCCCEEEEECCCEEECCCCEEEEEC-CCCCCCCCCCCCEEEEEC
Q ss_conf 10012201-2332210013442022343-10124403674021102322430574220000-232221123573266424
Q gi|254780675|r 235 VQRSLQKR-GIKILTESKISSVKQKGDM-VSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN-IGLEKIGVKTSNGCIIVD 311 (481)
Q Consensus 235 ~~~~l~~~-Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~-L~Le~~gi~~~~g~i~vd 311 (481)
+.+.+.+. .+..+.++++..++...++ ..+++...+|+ +.+++++++.|=|..-.+.. ++++..+-.....+++.|
T Consensus 115 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~i~a~llVgADG~~S~vR~~~gi~~~~~~y~q~aiv~~ 193 (402)
T PRK08774 115 LQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATADGE-QLVRARLVVGADGSHSAVRELLHIGTDQHDFLQTLFVAR 193 (402)
T ss_pred HHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECCCC-EEEEECEEEECCCCCCCCHHHCCCCCEECCCCCEEEEEE
T ss_conf 9999985789489822289999995368616999937995-798305999958998452312488963046773699998
No 305
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.34 E-value=0.00035 Score=49.19 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf 4899989857999999999879-9399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG-FKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G-~~V~liEk~~ 37 (481)
.|+|||||+||+++|+.|++.| .+|+|+|+.+
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899999448999999999853999889994289
No 306
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.33 E-value=0.00042 Score=48.63 Aligned_cols=41 Identities=39% Similarity=0.590 Sum_probs=36.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEE
Q ss_conf 434899989857999999999879939999788---88624632
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA---GLGGICLN 44 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~---~~GGtC~~ 44 (481)
.|||+|+|+|-||+.||.+++..|++|+|+|++ .+||...|
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW 48 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW 48 (552)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
T ss_conf 44279987527988999988726765999705554565651343
No 307
>PRK07538 hypothetical protein; Provisional
Probab=97.33 E-value=7.4e-05 Score=54.05 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHCCCCCCCCEEEEE-CCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 3322100134420223431012440-367402110232243057422000
Q gi|254780675|r 244 IKILTESKISSVKQKGDMVSVQVER-KDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 244 v~i~~~~~v~~v~~~~~~~~v~~~~-~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
..|+++.+++.++.+++++.+++.. .++...++++|.|+-|=|.+-.+.
T Consensus 119 ~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGADGi~S~VR 168 (413)
T PRK07538 119 DAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGADGIHSAVR 168 (413)
T ss_pred CEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEECCCCCCHHH
T ss_conf 68996778989887499529999715788723998488998889875245
No 308
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.31 E-value=3.3e-05 Score=56.61 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------2--2222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
++++|||+|+.|+-.|..|++.|.+||+.|+.+++. | +.++++.+.-.+.+++.||+|.+|..+-+-
T Consensus 307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV~f~~n~~VGk~---- 382 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT---- 382 (944)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECCC----
T ss_conf 8679988576899999999977993399944787885589558766687899999999999678399978564776----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCC-EEE
Q ss_conf 4310124403674021102322430574-220
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGV-QGN 290 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr-~Pn 290 (481)
+++. +.+.--+|.|++++|- .|.
T Consensus 383 ----~tl~----eL~~eGydAVfIg~GAg~p~ 406 (944)
T PRK12779 383 ----ATLE----DLKAEGFWKIFVGTGAGLPT 406 (944)
T ss_pred ----CCHH----HHHHCCCCEEEEEECCCCCC
T ss_conf ----8899----99768999899974788875
No 309
>PRK07608 hypothetical protein; Provisional
Probab=97.28 E-value=9.1e-05 Score=53.40 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 2221001220123322100134420223431012440367402110232243057422000
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
...+.+.++..+.-.+++.++++++.+++++.+++ .||+ ++++|+|+-|=|..-.+.
T Consensus 115 ~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~--~~g~--~i~a~llVgADG~~S~vR 171 (389)
T PRK07608 115 ERALDAALRFQGNLTWFDARAQGLDVTPDAATLTL--SDGQ--VLEADLVVGADGAHSWVR 171 (389)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEE--CCCC--EEEEEEEEEECCCCHHHH
T ss_conf 99999998618986998878889997299179998--8998--999658999669976888
No 310
>PRK08013 hypothetical protein; Provisional
Probab=97.20 E-value=0.00022 Score=50.60 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 221001220-1233221001344202234310124403674021102322430574220000
Q gi|254780675|r 233 QFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 233 ~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.+++ .+|+++.+++++++...++...+++ .|| +++++++|+.|=|..-.+..
T Consensus 115 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v~l--~~g--~~i~a~lvVgADG~~S~vR~ 172 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLTL--KDG--SMLTARLVIGADGANSWLRN 172 (400)
T ss_pred HHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEE--CCC--CEEEEEEEEECCCCCCHHHH
T ss_conf 99999998689829986866899871697159994--799--89974289997887613233
No 311
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.20 E-value=0.0033 Score=42.07 Aligned_cols=47 Identities=13% Similarity=0.337 Sum_probs=27.8
Q ss_pred EEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEE-CCCCE-EECCC-CEEECC
Q ss_conf 2110232243057422000023222112357326642-48742-30258-588304
Q gi|254780675|r 274 SSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIV-DGYGR-TNVPG-IYAIGD 326 (481)
Q Consensus 274 ~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~v-d~~~q-Ts~p~-IyA~GD 326 (481)
+++++..+++|||-+|++.. |++.|...|.+ |+-|. ...|. +-.+|-
T Consensus 279 ~~~~aKnIIIATGS~P~~pp------gi~iD~k~V~TSd~AL~Le~lPk~m~IIGg 328 (673)
T PTZ00153 279 KEFKVKNIIIATGSTPNIPD------NIEIDDKSVFTSDEAVKLEGLKNYMGIIGM 328 (673)
T ss_pred CEEECCEEEECCCCCCCCCC------CCCCCCCEEECHHHHCCHHHCCCEEEEECC
T ss_conf 55502307990188778899------878687668630331270007865899877
No 312
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00024 Score=50.30 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCCCCC----------------------CCC----------CCCCCCC
Q ss_conf 4432156543321000232101333-100000000122----------------------222----------2212221
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDRILP----------------------VED----------SEISQFV 235 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~ll~----------------------~~d----------~~~~~~~ 235 (481)
.+++|||||..|+=.|..|.+.|.. +.++|+++++.. .++ .++.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 54899898788999999999759986799970576678655566871676797401158888877655677764389999
Q ss_pred CHHHHHCC--CCCCCCHHHHHHCCC--CCCCCEEEEECCCCEEEEECCCEEECCCC--EEEEEC
Q ss_conf 00122012--332210013442022--34310124403674021102322430574--220000
Q gi|254780675|r 236 QRSLQKRG--IKILTESKISSVKQK--GDMVSVQVERKDGSVSSMQAEKLLLSAGV--QGNIEN 293 (481)
Q Consensus 236 ~~~l~~~G--v~i~~~~~v~~v~~~--~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr--~Pn~~~ 293 (481)
...+++.+ .++..++.|+.+..+ ++...|+.+.. ...++.+|.|++|+|. .|++..
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~--~~~~~~a~~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDG--GTGELTADFVVVATGHLSEPYIPD 150 (443)
T ss_pred HHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCC--CCCEEECCEEEECCCCCCCCCCCC
T ss_conf 99999835604502145256886305887069996488--752251267998305789897888
No 313
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.18 E-value=0.00041 Score=48.66 Aligned_cols=36 Identities=47% Similarity=0.633 Sum_probs=33.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 348999898579999999998799399997888-862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GG 40 (481)
||++|||+|-+|+.+|-+++..|+||++.|+=- .||
T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGG 37 (506)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGG 37 (506)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf 9478981683178999999854622553220114788
No 314
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=97.18 E-value=0.00054 Score=47.82 Aligned_cols=31 Identities=39% Similarity=0.747 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCEEEEECC
Q ss_conf 4899989857999999999879---939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG---FKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G---~~V~liEk~ 36 (481)
||||||||-|||-||+.+++.| ++|+||=|=
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKv 34 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKV 34 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 9788818668999999997357796107999556
No 315
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.14 E-value=0.0033 Score=42.11 Aligned_cols=114 Identities=19% Similarity=0.316 Sum_probs=68.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99989857999999999879939999788886246325673708899999999999842117821348754499999999
Q gi|254780675|r 8 ILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIVKR 87 (481)
Q Consensus 8 vIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (481)
+|||||==||.||..|..+|+.|-+||-. +.+ |++
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~--------------------p~L-------------------------M~~ 185 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELA--------------------PFL-------------------------MAK 185 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHH--------------------HHH-------------------------HHH
T ss_conf 58867415889999998779706446764--------------------898-------------------------999
Q ss_pred HH-HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC-
Q ss_conf 99-9999853446876301414210000011222210023687-52001355554322586389972455257543111-
Q gi|254780675|r 88 SR-DISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPS-QPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRH- 164 (481)
Q Consensus 88 ~~-~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~~- 164 (481)
.= ... ...++..+++.|+++..|+ ..+++++...+ ... .......+ ...++||=||.|+|=||+.
T Consensus 186 QLD~~a---G~lL~~~le~~G~~~l~Gt----~k~t~eiv~~~d~~~----~~~~rf~D-G~~l~aDlvv~A~GirP~~~ 253 (813)
T TIGR02374 186 QLDQTA---GRLLQRELEKKGLTVLLGT----EKDTVEIVGEDDVEK----VERLRFKD-GSSLEADLVVFAAGIRPRDE 253 (813)
T ss_pred HHHHHH---HHHHHHHHHHCCCEEEECC----CCCEEEEEECCCHHH----HCEEECCC-CCEEEECEEEEECCCCCCHH
T ss_conf 999999---9999999985795798617----611057641564012----31224238-97887037999515666368
Q ss_pred C---CCCCCCC-CCCCCC
Q ss_conf 0---1113455-542212
Q gi|254780675|r 165 I---EGIEPDS-HLIWTY 178 (481)
Q Consensus 165 ~---~g~~~~~-~~~~t~ 178 (481)
+ -|++... ..++++
T Consensus 254 LA~~aGl~v~~RrGiivn 271 (813)
T TIGR02374 254 LAAEAGLKVNDRRGIIVN 271 (813)
T ss_pred HHHHCCCCCCCCCCEEEC
T ss_conf 998659735476767872
No 316
>pfam00996 GDI GDP dissociation inhibitor.
Probab=97.12 E-value=0.00096 Score=45.98 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEE
Q ss_conf 9864348999898579999999998799399997888-86246
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGIC 42 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC 42 (481)
|.++|||+|+|.|-.=--.|..|++.|+||+-+|++. +||.+
T Consensus 1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~~ 43 (439)
T pfam00996 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGES 43 (439)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 9985029997998799999999973699899977998778630
No 317
>KOG0685 consensus
Probab=97.09 E-value=0.00088 Score=46.27 Aligned_cols=35 Identities=46% Similarity=0.749 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEC-CCCCE
Q ss_conf 48999898579999999998799-3999978-88862
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGF-KVAIVEY-AGLGG 40 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~-~V~liEk-~~~GG 40 (481)
-|+|||||-||++||.++-+.|. .++|+|. +++||
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 4999898567799999999828964899970466675
No 318
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=97.09 E-value=0.00019 Score=51.08 Aligned_cols=221 Identities=18% Similarity=0.283 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEEC---C---CCCC--------CCCCC-----CCCCCCCHHHHHCCCCCCCCH
Q ss_conf 432156543321000232101333100000---0---0012--------22222-----212221001220123322100
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEV---K---DRIL--------PVEDS-----EISQFVQRSLQKRGIKILTES 250 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~---~---~~ll--------~~~d~-----~~~~~~~~~l~~~Gv~i~~~~ 250 (481)
+++|||+|+-|+=-|-.-+|.+.+.-|+++ + .+|. |+|.. ++.+...++..+-|.++..+.
T Consensus 2 DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~ 81 (321)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGE 81 (321)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 28998478678889999887467278983577774555333220651368688876628899999999987067366267
Q ss_pred HHHHHCCCCC-----CCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCC-C-CCCEEE----EECC--CCEEE
Q ss_conf 1344202234-----31012440367402110232243057422000023222112-3-573266----4248--74230
Q gi|254780675|r 251 KISSVKQKGD-----MVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGV-K-TSNGCI----IVDG--YGRTN 317 (481)
Q Consensus 251 ~v~~v~~~~~-----~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi-~-~~~g~i----~vd~--~~qTs 317 (481)
.|.+|++.++ -..+... ++.++|.|++|||-.| +.|++.+ |= + +.|| | ..|- .+= -
T Consensus 82 ~v~~v~~~~~~yE~~~F~~~~~------~~y~a~avIiAtGa~~--r~lg~~k-GE~ef~GrG-VSyCA~CDGA~~ff-k 150 (321)
T TIGR01292 82 EVIRVDKSDRAYESDPFKVKTG------KEYTAKAVIIATGAEA--RKLGIPK-GEDEFLGRG-VSYCATCDGASPFF-K 150 (321)
T ss_pred EEEEEECCCCCCCCCEEEEEEC------CEEEEEEEEEECCCHH--HHCCCCC-CHHHHCCCC-EEEEEHHCCCCHHH-C
T ss_conf 0568633788436610389717------5688658999138715--4237886-645532686-66722310540120-5
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHH----------------------HCCCC--CCCCCCCCCCEEEEEEEH--H
Q ss_conf 258588304445532444123202555543----------------------02466--443212232002454303--3
Q gi|254780675|r 318 VPGIYAIGDVAGAPMLAHKAEHEGIICIEK----------------------IAGKS--KVYPLDKSKIPGCTYCNP--Q 371 (481)
Q Consensus 318 ~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~----------------------i~~~~--~~~~~d~~~ip~~vft~P--~ 371 (481)
...|..+|. + ..|.+|+.++.+. +...+ +. ++-++.++.=|-.+- .
T Consensus 151 ~K~V~VvGG---G----dsA~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I-~~l~n~~v~Ei~G~~~~~ 222 (321)
T TIGR01292 151 NKEVAVVGG---G----DSALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKI-EFLWNSTVEEIVGDNSKK 222 (321)
T ss_pred CCEEEEECC---C----CHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCE-EEECCCEEEEEECCCCEE
T ss_conf 988999879---8----24888889998538767999779863632899989983789878-996486899996178315
Q ss_pred HEEEC------CCHHHHHCCCCCEEEEEEECCCCHHHH--CCCCCCEEEEEEEECC----CCE-EEEEEEECC
Q ss_conf 40001------496876107972799999646382332--0789821899999889----985-999999829
Q gi|254780675|r 372 VASIG------LTEEKARSQGLDIRVGKHSFSANGKAI--TLGEDSGMIKTIFNNK----TGE-VLGVHMVGP 431 (481)
Q Consensus 372 ia~vG------~te~ea~~~g~~~~~~~~~~~~~~~~~--~~~~~~G~~kiv~~~~----~~~-ilG~~~~g~ 431 (481)
+.+|= -.++|++-.|+-+..++.|-.+....+ ...++.||+ ++|+. .++ |=|+-..|+
T Consensus 223 V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~~~~~G~~~~D~~GyI--~t~~~~Gn~~~Tsv~GvFAAGD 293 (321)
T TIGR01292 223 VESVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLGLLELDEGGYI--VTDEGLGNTMRTSVPGVFAAGD 293 (321)
T ss_pred EEEEEEEECCCCEEEEEEECEEEEEECCCCCHHHHHCCCCEEECCCCCE--EECCCCCCEEECCCCCEEEEEE
T ss_conf 5335899623884889984447898412032057650783467699868--8617548612306686897304
No 319
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.08 E-value=0.00072 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCC
Q ss_conf 4899989857999999999879-----93999978888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG-----FKVAIVEYAGL 38 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G-----~~V~liEk~~~ 38 (481)
||+|||||..|++.|+.+++.+ .||.|||+...
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~ 38 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSP 38 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 97888565899999999850677557615898656574
No 320
>KOG1298 consensus
Probab=97.06 E-value=0.00088 Score=46.27 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6434899989857999999999879939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
..+||+|||+|-+|-+.|..+++.|.||.+||++
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7544799888622789999985078579999634
No 321
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=97.06 E-value=5.6e-05 Score=54.98 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 22210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
...+...++..|.+|+++++|++|..+++++.|.+ .||+ ++++|.|++|+..
T Consensus 207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~--~~G~--~~~ad~VI~a~p~ 258 (444)
T pfam01593 207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTT--VDGE--VIEADAVIVTVPL 258 (444)
T ss_pred HHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEE--CCCC--EEECCEEEECCCH
T ss_conf 99999997415986995897789999699699998--8997--6644868985798
No 322
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=97.04 E-value=0.00078 Score=46.63 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=28.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHC----CCCEEEEEC
Q ss_conf 3489998985799999999987----993999978
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQL----GFKVAIVEY 35 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~----G~~V~liEk 35 (481)
|||||+||||+|++.|..+... -+||+|+|-
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~ 35 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDA 35 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 92898888578999999973187320230678652
No 323
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.03 E-value=0.00096 Score=46.00 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC--CCCCEE-EE-ECCCCEEEEE---CCCEEECCCCE
Q ss_conf 2212221001220123322100134420223--431012-44-0367402110---23224305742
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKG--DMVSVQ-VE-RKDGSVSSMQ---AEKLLLSAGVQ 288 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~--~~~~v~-~~-~~dG~~~~i~---~D~vl~a~Gr~ 288 (481)
+.+..-+.+.|+++||+|+++++|+.+.-+. +...++ +. ..+|..++|. -|.|++..|-.
T Consensus 226 eSii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~vt~i~~~~~g~~~~i~l~~~DlVfvTnGS~ 292 (577)
T PRK13977 226 ESLVLPLIKYLEEHGVDFEYGTKVTDIDFDITGGKKTATAIHLTDDGKEESIDLTEDDLVFVTNGSM 292 (577)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCEEEEECCCC
T ss_conf 4799999999998798797799899989853899768999999818966777618888899978865
No 324
>KOG0399 consensus
Probab=97.03 E-value=0.00015 Score=51.83 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------CC--CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 443215654332100023210133310000000012-------22--222212221001220123322100134420223
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------PV--EDSEISQFVQRSLQKRGIKILTESKISSVKQKG 259 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~ 259 (481)
+++.|||+|+.|+-.|..|++.|-.|++.+|.+|+. |. .|+.+.+.-.+.|.++||+|++|+++-.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~---- 1861 (2142)
T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH---- 1861 (2142)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC----
T ss_conf 4799974684146689998644767999971577674566168752132799999999988618548850322565----
Q ss_pred CCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 43101244036740211023224305742
Q gi|254780675|r 260 DMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 260 ~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
+.+ |+ ..-+.|.+++|+|..
T Consensus 1862 ----vs~---d~--l~~~~daiv~a~gst 1881 (2142)
T KOG0399 1862 ----VSL---DE--LKKENDAIVLATGST 1881 (2142)
T ss_pred ----CCH---HH--HHHCCCEEEEEECCC
T ss_conf ----567---88--753057599982788
No 325
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.00 E-value=0.00027 Score=50.02 Aligned_cols=54 Identities=13% Similarity=0.319 Sum_probs=38.5
Q ss_pred CCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 1001220-123322100134420223431012440367402110232243057422000
Q gi|254780675|r 235 VQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 235 ~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+++ .+|+++.+..++.++.+++...++++ +|+ ++++|+|+.|=|..-.+.
T Consensus 116 L~~~~~~~~~i~~~~~~~v~~~~~~~~~~~v~l~--~g~--~i~a~llIgADG~~S~vR 170 (384)
T PRK08849 116 LWQQFAQYPNLTLLCPEKLKDLEFSAEGNRVTLE--SGA--EIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHHCCCEEEECCCEEEEEEECCCEEEEEEC--CCC--EEEEEEEEEEECCCHHHH
T ss_conf 9999984899199838778898853881499978--999--998547999207864667
No 326
>KOG2844 consensus
Probab=96.98 E-value=0.004 Score=41.49 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCC--CEEEEEECC
Q ss_conf 34899989857999999999879939999-78888--624632567
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV-EYAGL--GGICLNWGC 47 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~li-Ek~~~--GGtC~~~GC 47 (481)
-|++|||||.+|.++|..+++.|.|.++. |+..+ |+|.+-.|-
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl 85 (856)
T KOG2844 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGL 85 (856)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 5579985785047899999971465247876411036656333010
No 327
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.96 E-value=0.00038 Score=48.87 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=35.4
Q ss_pred CCEEEEECCCCE------EECCCCEEECCCCCCCCC--------CCCCCCCHHHHHHHHCCCCC
Q ss_conf 732664248742------302585883044455324--------44123202555543024664
Q gi|254780675|r 304 SNGCIIVDGYGR------TNVPGIYAIGDVAGAPML--------AHKAEHEGIICIEKIAGKSK 353 (481)
Q Consensus 304 ~~g~i~vd~~~q------Ts~p~IyA~GDv~g~~~l--------~~~A~~qg~~aa~~i~~~~~ 353 (481)
.-|++.||+.+| +..||+||+|.++|+..= .-.+.--||+|++|++...+
T Consensus 440 T~GGl~id~~~qVld~dg~~IpGLYAaGe~agg~~g~~~~gG~~l~~a~vfGr~AG~~AA~~~k 503 (506)
T PRK06481 440 TMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFVK 503 (506)
T ss_pred ECCCEEECCCCCEECCCCCEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8769179937376689969939977754556178778615899999999999999999999997
No 328
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.94 E-value=0.00058 Score=47.59 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 1001220-123322100134420223431012440367402110232243057422000
Q gi|254780675|r 235 VQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 235 ~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+++ .+|+++.+.+++.++.+++.+.++++ +| +++.+++|+.|=|..-.+.
T Consensus 117 L~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~--~g--~~i~a~llVgaDG~~S~vR 171 (405)
T PRK08850 117 LLEQIQKQDNVTLLMPARCQSIAVGESEAWLTLD--NG--QALTAKLVVGADGANSWVR 171 (405)
T ss_pred HHHHHHCCCCCEEECCCEEEEEEECCCCEEEEEC--CC--CEEEEEEEEEECCCCHHHH
T ss_conf 9999973899199737535567617971599977--99--8887508999169873789
No 329
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=96.91 E-value=0.0016 Score=44.33 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=31.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|-.+ |+|||||||||-..--|.+.|...+|+||..
T Consensus 1 MkTq--VaIiG~GPsGLLLGQLLh~~GId~viLEr~~ 35 (393)
T TIGR02360 1 MKTQ--VAIIGAGPSGLLLGQLLHKAGIDTVILERKS 35 (393)
T ss_pred CCEE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9517--9997577357899999986698589972357
No 330
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=96.87 E-value=0.00037 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCCCEE-ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 487423-025858830444553244412320255554302466
Q gi|254780675|r 311 DGYGRT-NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 311 d~~~qT-s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~ 352 (481)
...||| .+||+|.+|.++|.... -.|..||.+|+-|++...
T Consensus 346 ~~tLe~k~~~~Lf~AGQInGt~GY-eEAaaqGliAGiNaa~~~ 387 (391)
T pfam01134 346 LPTLETKKIPGLFFAGQINGTEGY-EEAAAQGLLAGINAARKA 387 (391)
T ss_pred CCHHHHCCCCCEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 303540546987876622477079-999999999999999997
No 331
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00044 Score=48.48 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC------------CCCCC-CCCCCCC----HHHHHCCCCCCCCHH
Q ss_conf 443215654332100023210133310000000012------------22222-2122210----012201233221001
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL------------PVEDS-EISQFVQ----RSLQKRGIKILTESK 251 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll------------~~~d~-~~~~~~~----~~l~~~Gv~i~~~~~ 251 (481)
-.++|||||+.|+=.|-.++|.+.++++|.-++.+. |.++. .....++ ++.+..|+++.. ..
T Consensus 4 ~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE-EE
T ss_conf 28899895889999999998758985699947875886344333357679867775089999999777634708888-99
Q ss_pred HHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf 344202234310124403674021102322430574220
Q gi|254780675|r 252 ISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGN 290 (481)
Q Consensus 252 v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn 290 (481)
+.+++..++.. .+...+| +++++.|++|+|..+.
T Consensus 83 v~~v~~~~~~F--~v~t~~~---~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 83 VEKVELEGGPF--KVKTDKG---TYEAKAVIIATGAGAR 116 (305)
T ss_pred EEEEEECCCEE--EEEECCC---EEEEEEEEECCCCCCC
T ss_conf 89986068609--9994797---4986569996177656
No 332
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.83 E-value=0.00031 Score=49.56 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=26.1
Q ss_pred EECCCCEEECCCCCCC-CC----CCCCCCCHHHHHHHHCCCC
Q ss_conf 3025858830444553-24----4412320255554302466
Q gi|254780675|r 316 TNVPGIYAIGDVAGAP-ML----AHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 316 Ts~p~IyA~GDv~g~~-~l----~~~A~~qg~~aa~~i~~~~ 352 (481)
+..+++..+||++|.. ++ .+.|+..|.+||+.|....
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aae~i~~~~ 307 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEAL 307 (396)
T ss_pred EECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 052898999846667488655773999999999999998642
No 333
>KOG1336 consensus
Probab=96.82 E-value=0.0079 Score=39.34 Aligned_cols=96 Identities=13% Similarity=0.364 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCC--CCCCEECCCCCCCCC-----------CCCCCCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf 443215654332100023210133--310000000012222-----------2221222100122012332210013442
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDV--DVSLIEVKDRILPVE-----------DSEISQFVQRSLQKRGIKILTESKISSV 255 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~--~Vtli~~~~~ll~~~-----------d~~~~~~~~~~l~~~Gv~i~~~~~v~~v 255 (481)
+.++|+|+|+-|.=++..++..|- +.+++.+. .++|.. ..+++....+.+++.||++++++.++.+
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~-~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE-YLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCEEEEE
T ss_conf 4499976882033557667752887660787423-347654000133201014562105826676538237970305886
Q ss_pred CCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 022343101244036740211023224305742200
Q gi|254780675|r 256 KQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 256 ~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
.-... ++...+| ++++.|.+++|||-.|++
T Consensus 154 D~~~K----~l~~~~G--e~~kys~LilATGs~~~~ 183 (478)
T KOG1336 154 DLASK----TLVLGNG--ETLKYSKLIIATGSSAKT 183 (478)
T ss_pred ECCCC----EEEECCC--CEEECCEEEEEECCCCCC
T ss_conf 41465----7996798--353010699961576665
No 334
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.81 E-value=0.00032 Score=49.48 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=36.2
Q ss_pred CCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 210012201233221001344202234310124403674021102322430574220000
Q gi|254780675|r 234 FVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 234 ~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
.+.+.+.+. .++++.+++.++.+++++.+++ .||+ +.++|.|+-|=|..-.+..
T Consensus 110 ~L~~~~~~~--~~~~~~~v~~v~~~~~~v~v~f--~dG~--~~~aDlVVGADGi~S~vR~ 163 (414)
T TIGR03219 110 ALLKHLPEG--IASFGKRATQIEEQAEEVQVLF--TDGT--EYRCDLLIGADGIKSALRD 163 (414)
T ss_pred HHHHHCCCC--EEEECCEEEEEEEECCEEEEEE--CCCC--EEECCEEEECCCCCHHHHH
T ss_conf 998547666--7796989999999589279998--7998--8722689974764236788
No 335
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=96.79 E-value=0.002 Score=43.72 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCC-CCCCCC--CE
Q ss_conf 212221001220123322100134420223431012440367402110232243057422000023222-112357--32
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEK-IGVKTS--NG 306 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~-~gi~~~--~g 306 (481)
.+++++++...+.||+.+. ..|+.+..++++....+.+.+|+ ++++|..+=|+|.+--. +.+ .+.++. ..
T Consensus 158 k~~~~Lr~~a~~~GV~~i~-~~V~~v~~~~~G~I~sl~l~~G~--~i~aDlfIDCTGF~~lL----i~~~l~~~~~s~s~ 230 (457)
T pfam04820 158 LYARFLRRNAEARGVTRVE-GKVVDVQLDADGFVTSLRLEDGR--EVEADLFIDCSGFRGLL----IEQALKTGYEDWSD 230 (457)
T ss_pred HHHHHHHHHHHHCCCEEEE-EEEEEEEECCCCCEEEEEECCCC--EEEEEEEEECCCCCCCC----CCCCCCCCCCCHHH
T ss_conf 9999999988857988998-47879998899967899967898--88764899778741100----00135998515756
Q ss_pred EEEECCCCE
Q ss_conf 664248742
Q gi|254780675|r 307 CIIVDGYGR 315 (481)
Q Consensus 307 ~i~vd~~~q 315 (481)
.+.+|.-+-
T Consensus 231 ~L~~d~Ava 239 (457)
T pfam04820 231 WLPCDRALA 239 (457)
T ss_pred CCCCCCEEE
T ss_conf 065673256
No 336
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.78 E-value=0.00049 Score=48.10 Aligned_cols=36 Identities=44% Similarity=0.786 Sum_probs=33.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEE
Q ss_conf 4899989857999999999879939999788-88624
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGI 41 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGt 41 (481)
+++|||||+||++||+.|+++|.+|.|+||+ .+||.
T Consensus 126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 3599868489899999999759808999417864504
No 337
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.75 E-value=0.00092 Score=46.11 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred CEEEEECCCCEE--------------ECCCCEEECCCCCCCCCCCCCCC-----------CHHHHHHHHC
Q ss_conf 326642487423--------------02585883044455324441232-----------0255554302
Q gi|254780675|r 305 NGCIIVDGYGRT--------------NVPGIYAIGDVAGAPMLAHKAEH-----------EGIICIEKIA 349 (481)
Q Consensus 305 ~g~i~vd~~~qT--------------s~p~IyA~GDv~g~~~l~~~A~~-----------qg~~aa~~i~ 349 (481)
=|++.+|+.-|. ..+|+||+|.|+|+. |-+.+ =||+|++|.+
T Consensus 833 MGGlkINtkAqVL~~dg~vnV~~~gKPI~GLYAAGEVTGGV---HG~NRLGGNSLlECVVFGRIAGd~AA 899 (1167)
T PTZ00306 833 MGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVTGGV---HGGNRLGGNSLLECVVFGKIAGDRAA 899 (1167)
T ss_pred CCCEEECCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89836888854884478512356687427657864214765---66766605778788861487769899
No 338
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.57 E-value=0.0036 Score=41.79 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=33.1
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCEEEEEECCCCCHH
Q ss_conf 89998985799999999987--99399997888862463256737088
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQL--GFKVAIVEYAGLGGICLNWGCIPTKS 52 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~--G~~V~liEk~~~GGtC~~~GCiPsK~ 52 (481)
|+||||||||+..|+.++++ +..|+|+|+++.|-| --+|-+=|-.
T Consensus 3 I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dT-fGwGVVfsD~ 49 (770)
T PRK08255 3 IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDT-FGWGVVFSDA 49 (770)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-EEEEEECCHH
T ss_conf 9997787589999999986589997479842799995-2446874726
No 339
>KOG1238 consensus
Probab=96.55 E-value=0.0033 Score=42.12 Aligned_cols=35 Identities=34% Similarity=0.582 Sum_probs=31.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Q ss_conf 8643489998985799999999987-9939999788
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQL-GFKVAIVEYA 36 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~-G~~V~liEk~ 36 (481)
...||.+|||||.||-..|-+|++. ..+|+|+|.+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG 90 (623)
T KOG1238 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG 90 (623)
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 357998998987312788876513887349999568
No 340
>KOG2853 consensus
Probab=96.52 E-value=0.0034 Score=41.99 Aligned_cols=43 Identities=33% Similarity=0.653 Sum_probs=35.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC----------CCEEEEEE
Q ss_conf 64348999898579999999998----799399997888----------86246325
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQ----LGFKVAIVEYAG----------LGGICLNW 45 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~----~G~~V~liEk~~----------~GGtC~~~ 45 (481)
.+.||+|||||-.|.+.|..+.+ .|++|+++|++. +||.|-..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEEC
T ss_conf 436789988886522658999887643794399996267521001145554443321
No 341
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.49 E-value=0.0029 Score=42.45 Aligned_cols=33 Identities=39% Similarity=0.664 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCC
Q ss_conf 48999898579999999998----7993999978888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQ----LGFKVAIVEYAGL 38 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~----~G~~V~liEk~~~ 38 (481)
||+|||||-+|.-||.+|+. .|+||+|+||..+
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~ 37 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAV 37 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9478717855202789999874068837999611465
No 342
>PRK09897 hypothetical protein; Provisional
Probab=96.36 E-value=0.0018 Score=43.94 Aligned_cols=45 Identities=7% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCE-EE
Q ss_conf 2332210013442022343101244036740211023224305742-20
Q gi|254780675|r 243 GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQ-GN 290 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~-Pn 290 (481)
.|+++++++|+.+..+.+++.+..... .....+|.+++|||-. |.
T Consensus 123 ~i~Vh~~~~VtDi~~~~~gv~l~~~~~---~~~~~FD~vVIaTGH~WP~ 168 (535)
T PRK09897 123 AVAVYESCQVTDLQITNAGVMLATNQD---LPSETFDLAVIATGHVWPD 168 (535)
T ss_pred EEEEEECCEEEEEEECCCCEEEEECCC---CCCCCCEEEEEECCCCCCC
T ss_conf 699975766676443699559983378---8764320799807987998
No 343
>KOG2614 consensus
Probab=96.36 E-value=0.0071 Score=39.66 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=34.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-C--CCEEEEEEC
Q ss_conf 4899989857999999999879939999788-8--862463256
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-G--LGGICLNWG 46 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~--~GGtC~~~G 46 (481)
+|+|+|||-+|+++|..+.+.|.+|.+.|+. . -+|+.+|-+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~ 47 (420)
T KOG2614 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLA 47 (420)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEH
T ss_conf 48998883898999999987587489986214655588411214
No 344
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.35 E-value=0.00073 Score=46.86 Aligned_cols=44 Identities=27% Similarity=0.544 Sum_probs=16.8
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 012332210013442022343101244036740211023224305742
Q gi|254780675|r 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 241 ~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
+.|+++++++.|+++..+++. .+.+. .+|. ++.++.|+.|=|..
T Consensus 120 ~aGA~i~~g~~V~~li~~~Gr-VvGV~-~~G~--~i~A~vVI~AdGv~ 163 (428)
T PRK10157 120 EAGAQLITGIRVDNLVQRDGK-VVGVE-ADGD--VIEAKTVILADGVN 163 (428)
T ss_pred HCCCEEECCCEEEEEEEECCE-EEEEE-CCCC--EEEEEEEEEECCCH
T ss_conf 809889868581001434897-99997-5895--89871799944721
No 345
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=96.34 E-value=0.0045 Score=41.10 Aligned_cols=37 Identities=32% Similarity=0.347 Sum_probs=30.4
Q ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEECC-CCCEEE
Q ss_conf 489998985799999999987----9939999788-886246
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL----GFKVAIVEYA-GLGGIC 42 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~----G~~V~liEk~-~~GGtC 42 (481)
+.-|||+|-|+|+||.+|-+- |.++.|+|+. ..||.+
T Consensus 4 ~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GGs~ 45 (500)
T pfam06100 4 SAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGSL 45 (500)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf 599989768999988988642787864138985588898654
No 346
>KOG2495 consensus
Probab=96.27 E-value=0.0025 Score=42.98 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC--CCC---------CCCCCCCCCHHHHHC--CCCCCCCHHHHHH
Q ss_conf 443215654332100023210133310000000012--222---------222122210012201--2332210013442
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL--PVE---------DSEISQFVQRSLQKR--GIKILTESKISSV 255 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~l~~~--Gv~i~~~~~v~~v 255 (481)
++++|+|.|-.|+-+..-+...-.+|++|..++.++ |.. -+.+.+-+....++. +++++ .++-..+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~~i 134 (491)
T KOG2495 56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTKI 134 (491)
T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEE-ECCCEEE
T ss_conf 539998575288999875266434249964630068731467764462431034556898862257871698-6260760
Q ss_pred CCCCCCCCEEEEECCC--CEEEEECCCEEECCCCEEEEECC
Q ss_conf 0223431012440367--40211023224305742200002
Q gi|254780675|r 256 KQKGDMVSVQVERKDG--SVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 256 ~~~~~~~~v~~~~~dG--~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
..+...+.+.-...++ ....+..|++++|+|-.|||=+.
T Consensus 135 Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495 135 DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred CCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCC
T ss_conf 66666798764126888612660266899962677777899
No 347
>KOG1276 consensus
Probab=96.26 E-value=0.0069 Score=39.77 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEE--EEEC-CCCCE
Q ss_conf 348999898579999999998799399--9978-88862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVA--IVEY-AGLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~--liEk-~~~GG 40 (481)
-+|+|+|||-+|+.+|.++++++-+++ |+|. +++||
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 669998885368899999985489955999842786665
No 348
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=96.21 E-value=0.0079 Score=39.35 Aligned_cols=30 Identities=37% Similarity=0.541 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
++|||||+-|+..|..++++|.+|+|||+.
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~ 31 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERR 31 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999998899999999998639278998125
No 349
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=96.09 E-value=0.0079 Score=39.33 Aligned_cols=43 Identities=28% Similarity=0.518 Sum_probs=34.4
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECC-CCCEE--EEEECCC
Q ss_conf 489998985799999999987--9939999788-88624--6325673
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL--GFKVAIVEYA-GLGGI--CLNWGCI 48 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~-~~GGt--C~~~GCi 48 (481)
|++|||||=||---|++|.+. .++|.|||.. .+||. ..+.+..
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSffd~D 48 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSFFDAD 48 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCC
T ss_conf 978872733578999987525987289998437766887530100366
No 350
>KOG1335 consensus
Probab=96.08 E-value=0.019 Score=36.62 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=29.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCE
Q ss_conf 89998985799999999987993999978-88862
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGG 40 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GG 40 (481)
++|||+|.-|+..+---.++|.+|++||- +.+||
T Consensus 214 ~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335 214 LTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred EEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCC
T ss_conf 79974745665546688763771799984434446
No 351
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=95.97 E-value=0.005 Score=40.81 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=19.2
Q ss_pred EECCCCEEECCCCCCCCCC-----CCCCCCHHHHHHHHC
Q ss_conf 3025858830444553244-----412320255554302
Q gi|254780675|r 316 TNVPGIYAIGDVAGAPMLA-----HKAEHEGIICIEKIA 349 (481)
Q Consensus 316 Ts~p~IyA~GDv~g~~~l~-----~~A~~qg~~aa~~i~ 349 (481)
++..+|--+||++|..-=+ .-|+.-|++||+.|.
T Consensus 277 ~~~r~~~L~GDAAG~V~~~SGEGIY~Am~sG~~aA~a~~ 315 (408)
T TIGR02023 277 DSGRDVVLVGDAAGLVTPASGEGIYFAMKSGKMAAEAIV 315 (408)
T ss_pred CCCCCEEEECCCCCCEECCCCCHHHHHHHCCHHHHHHHH
T ss_conf 058866998134663344376168887631078999999
No 352
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.93 E-value=0.0076 Score=39.47 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 34899989857999999999879939999788-8862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
-+|.|||+|-+|++||..+++. .+|+|+|.+ .+||
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCC
T ss_conf 6168972562014457753235-52478860662467
No 353
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.92 E-value=0.0056 Score=40.44 Aligned_cols=40 Identities=15% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECC
Q ss_conf 2332210013442022343101244036740211023224305
Q gi|254780675|r 243 GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSA 285 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~ 285 (481)
..+++++++|+++...++...++.+ +|. ....+|.|++++
T Consensus 117 dL~V~~~~rVt~v~~~~~~W~l~~~--~g~-~~~~~d~vvla~ 156 (331)
T COG3380 117 DLTVVLETRVTEVARTDNDWTLHTD--DGT-RHTQFDDVVLAI 156 (331)
T ss_pred CCHHHHHHHHHHHEECCCEEEEEEC--CCC-CCCCCCEEEEEC
T ss_conf 5043442231431233871689846--887-645534389936
No 354
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.92 E-value=0.0038 Score=41.69 Aligned_cols=47 Identities=28% Similarity=0.541 Sum_probs=20.4
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCC-EEE-EECCCCEEEEECCCEEECCC
Q ss_conf 201233221001344202234310-124-40367402110232243057
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVS-VQV-ERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~-v~~-~~~dG~~~~i~~D~vl~a~G 286 (481)
.++|.+++++++|+.+.++++.+. +.+ +...|+..++.++.|+.|+|
T Consensus 159 ~~~GA~i~~~t~V~~i~~~~g~v~gv~~~d~~tg~~~~i~ak~VINAAG 207 (545)
T PRK11101 159 KEHGARILTAHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAG 207 (545)
T ss_pred HHCCCCEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCC
T ss_conf 9748202026477899941887999999986789689998569997667
No 355
>PRK10015 hypothetical protein; Provisional
Probab=95.90 E-value=0.0018 Score=44.06 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred ECCCCEEECCCCCC-CCC------CCCCCCCHHHHHHHHC
Q ss_conf 02585883044455-324------4412320255554302
Q gi|254780675|r 317 NVPGIYAIGDVAGA-PML------AHKAEHEGIICIEKIA 349 (481)
Q Consensus 317 s~p~IyA~GDv~g~-~~l------~~~A~~qg~~aa~~i~ 349 (481)
..|++-.+||++|- .++ .|.|+..|++||+.+.
T Consensus 293 ~~dG~llvGDAAGfv~n~~~~~~Gi~~Am~SG~lAAeai~ 332 (429)
T PRK10015 293 VNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVI 332 (429)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 2598699951767756877422117999999999999999
No 356
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.89 E-value=0.0029 Score=42.55 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=18.8
Q ss_pred CEEEEEEEEEECCCCCC--CCCCCCCCCCC
Q ss_conf 63899724552575431--11011134555
Q gi|254780675|r 146 EGTYKAKHIIIATGARP--RHIEGIEPDSH 173 (481)
Q Consensus 146 ~~~~~a~~ivIATGs~p--~~~~g~~~~~~ 173 (481)
+.+++|+|+|=|-|++. +..-|++..+.
T Consensus 194 ~~tvrA~YlVGcDGA~S~VRk~lGi~~~G~ 223 (634)
T PRK08294 194 EETVRAKYVVGCDGARSRVRKSIGRELHGD 223 (634)
T ss_pred EEEEEEEEEEECCCCCCHHHHHCCCCCCCC
T ss_conf 379996179876877632587649876588
No 357
>KOG3855 consensus
Probab=95.89 E-value=0.0093 Score=38.81 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 643489998985799999999987----9939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQL----GFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~----G~~V~liEk~ 36 (481)
++|||+|+||||.|.+.|..+... -+||.|.|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECC
T ss_conf 10778998884477899998624985000014677424
No 358
>PRK11445 putative oxidoreductase; Provisional
Probab=95.88 E-value=0.0038 Score=41.62 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf 3322100134420223431012440367402110232243057
Q gi|254780675|r 244 IKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 244 v~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
.+++.++.+.+++.+++++.+.+. .+|+.+++.++.|+-|-|
T Consensus 113 ~~~~~~~~~~~i~~~~~g~~v~~~-~~g~~~~~~a~~iIGADG 154 (348)
T PRK11445 113 VEVYHNSLCRKIWREDDGYHVIFR-ADGWEQHITARYLVGADG 154 (348)
T ss_pred CCEEEEEEEEEEEECCCEEEEEEE-ECCEEEEEEECEEEECCC
T ss_conf 738971489999983980799997-189078987378998989
No 359
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=95.86 E-value=0.0045 Score=41.13 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=25.6
Q ss_pred CCEEEEECCCCEE------ECCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7326642487423------025858830444553244412320
Q gi|254780675|r 304 SNGCIIVDGYGRT------NVPGIYAIGDVAGAPMLAHKAEHE 340 (481)
Q Consensus 304 ~~g~i~vd~~~qT------s~p~IyA~GDv~g~~~l~~~A~~q 340 (481)
..|+|.+|+++|+ .+||+||+|.|+++- .|-|.+.
T Consensus 356 T~GGl~id~~~qVld~~g~~IpGLYAaGe~a~gg--~hG~~rl 396 (401)
T pfam00890 356 TMGGVRTDENGRVLDADGQPIPGLYAAGEVACGG--VHGANRL 396 (401)
T ss_pred ECCCEEECCCCEEECCCCCEECCEEEECCCCCCC--CCCCCCC
T ss_conf 0458179817638789998918988711676568--8876756
No 360
>KOG2665 consensus
Probab=95.83 E-value=0.0075 Score=39.51 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=86.1
Q ss_pred CCHHHHHCCCCCCCCHHHHHHCCCCCC---CCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf 100122012332210013442022343---1012440367402110232243057422000023222112357326642-
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSVKQKGDM---VSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIV- 310 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v~~~~~~---~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~v- 310 (481)
+.+.|+..|=++.+|-+++.++.+.+. +.+.+.+ |..+++++..++-++|..- +.+ .+.+|++.+..-+..
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n--gk~ee~r~~~~vtc~gl~s--dr~-aa~sgc~~dPriVpfr 276 (453)
T KOG2665 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN--GKGEEKRTKNVVTCAGLQS--DRC-AALSGCELDPRIVPFR 276 (453)
T ss_pred HHHHHHHHCCCCCCCCEECCCHHCCCCCCCCCEEEEC--CCCCEEEEEEEEEECCCCH--HHH-HHHHCCCCCCEEEECC
T ss_conf 9888987454121564101201036788888669945--8552257767887336337--678-8974899887041045
Q ss_pred CCCCEEE-------CCCCEEECCCC----C---------CCCCCCCCC----CCHHHHHHHHCCC--------C----CC
Q ss_conf 4874230-------25858830444----5---------532444123----2025555430246--------6----44
Q gi|254780675|r 311 DGYGRTN-------VPGIYAIGDVA----G---------APMLAHKAE----HEGIICIEKIAGK--------S----KV 354 (481)
Q Consensus 311 d~~~qTs-------~p~IyA~GDv~----g---------~~~l~~~A~----~qg~~aa~~i~~~--------~----~~ 354 (481)
.++++-. .-|||-+=|.- | ..+|-+.|. ++|..-..--++. . -.
T Consensus 277 G~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~ 356 (453)
T KOG2665 277 GEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLAS 356 (453)
T ss_pred CHHHHCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCHHHHEECCCHHHHHH
T ss_conf 31553176776242674544788877403200367677746418875678998751156546311235301576589887
Q ss_pred CCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCCEEEEEEECC-CCHHHHCCCCCCEEE-EEEEECCCCEE
Q ss_conf 3212232002454303340001496876107972799999646-382332078982189-99998899859
Q gi|254780675|r 355 YPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFS-ANGKAITLGEDSGMI-KTIFNNKTGEV 423 (481)
Q Consensus 355 ~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~-~~~~~~~~~~~~G~~-kiv~~~~~~~i 423 (481)
..++|..-+ ...--+++.+.+|+++.--|.+.....=. .--|+++++.+.-.+ --|+|...+.+
T Consensus 357 k~f~ygv~e-----~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~ 422 (453)
T KOG2665 357 KKFDYGVNE-----MYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHL 422 (453)
T ss_pred HHCCCCCCH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHEEEECCCCCC
T ss_conf 535756466-----765354662369999758654202344375323402016888871025784576666
No 361
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=95.80 E-value=0.025 Score=35.74 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=40.1
Q ss_pred EEEEEEEE-CCCCCCCCCCCCC--------CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHC-CC-CCCCCE
Q ss_conf 99724552-5754311101113--------4555422124521113334443215654332100023210-13-331000
Q gi|254780675|r 149 YKAKHIII-ATGARPRHIEGIE--------PDSHLIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKS-LD-VDVSLI 217 (481)
Q Consensus 149 ~~a~~ivI-ATGs~p~~~~g~~--------~~~~~~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~-lG-~~Vtli 217 (481)
.-|+|++| |-=.. +.|..++ |.+..+ +++|+.+-..++++|.|+|++|+ ||-+-++ .| ++|-+.
T Consensus 118 cFAEY~vvPA~Niw-k~P~~i~p~~A~iqePlGNAV---hTvL~~~~~G~~vlv~GaGPiGl-ma~AVAKa~GA~~Vi~~ 192 (341)
T TIGR00692 118 CFAEYVVVPADNIW-KNPKDIDPELAAIQEPLGNAV---HTVLESDLAGEDVLVIGAGPIGL-MAVAVAKAAGARNVIVI 192 (341)
T ss_pred CEEEEEEECCCCCC-CCCCCCCCCHHHHHCCCCHHH---HHHHCCCCCCCCEEEECCCHHHH-HHHHHHHHHCCCEEEEE
T ss_conf 05856760631112-587988701586615411044---46525776887189985774789-99999877278405996
Q ss_pred ECCC
Q ss_conf 0000
Q gi|254780675|r 218 EVKD 221 (481)
Q Consensus 218 ~~~~ 221 (481)
+..+
T Consensus 193 d~ne 196 (341)
T TIGR00692 193 DKNE 196 (341)
T ss_pred CCCH
T ss_conf 5864
No 362
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.80 E-value=0.0034 Score=41.96 Aligned_cols=34 Identities=35% Similarity=0.747 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6434899989857999999999879939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
..+||+||||||+|+++|..+++.|.+|+|||+.
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~ 34 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9854999997899999999998289968999077
No 363
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.79 E-value=0.0034 Score=42.01 Aligned_cols=55 Identities=11% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEE
Q ss_conf 221001220-123322100134420223431012440367402110232243057422000
Q gi|254780675|r 233 QFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 233 ~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
+.+.+.+++ ..|++..+..+..+..+++...+.+ ++ +++.++.++.|-|..-.+.
T Consensus 108 ~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~--~~i~~~llIgaDG~~S~vR 163 (374)
T PRK06617 108 KILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF---DD--KQIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHHHCCCCCEEECCCCEEEEECCCCCEEEEC---CC--CEEEEEEEEEECCCCHHHH
T ss_conf 99999996499948975751146652788269963---89--6785358999579851668
No 364
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.74 E-value=0.0034 Score=41.99 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|||+|.-|...|-++++.|.+|+++-++
T Consensus 3 I~I~GaGAiG~~~a~~L~~~g~~V~lv~r~ 32 (306)
T PRK12921 3 IAVVGAGAVGGTFGARLLEAGRDVTFLGRS 32 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999992499999999998369988999700
No 365
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.68 E-value=0.0031 Score=42.31 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCCCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 12221001220-1233221001344202234310124403674021102322430574220000
Q gi|254780675|r 231 ISQFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 231 ~~~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.+.+.+ .+|+++++.++++++.+++++.+++...++. +++++|.|+-|=|..-.+..
T Consensus 109 L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~-~~~~adlvIGADGi~S~vR~ 171 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV-ETVSAAYLIACDGVWSMLRQ 171 (400)
T ss_pred HHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCC-EEEECCEEEECCCCCCCHHH
T ss_conf 9999999997489948973878999995289604899738986-69970689966997631333
No 366
>PRK06184 hypothetical protein; Provisional
Probab=95.67 E-value=0.0031 Score=42.31 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=17.4
Q ss_pred CCEEEEEEEEEECCCCCC--CCCCCCCC
Q ss_conf 863899724552575431--11011134
Q gi|254780675|r 145 GEGTYKAKHIIIATGARP--RHIEGIEP 170 (481)
Q Consensus 145 ~~~~~~a~~ivIATGs~p--~~~~g~~~ 170 (481)
++.+++++++|=|-|++. +..-+++.
T Consensus 154 ~~~~i~a~ylVGaDGa~S~VR~~lgI~~ 181 (503)
T PRK06184 154 GEETVRARYLVGADGGRSFVRKALGIGF 181 (503)
T ss_pred CCEEEEEEEEECCCCCCHHHHHHCCCCC
T ss_conf 7189998777415777746688639987
No 367
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.66 E-value=0.0037 Score=41.75 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|||+|.-|...|.++++.|.+|+++.++
T Consensus 3 I~IiGaGaiG~~~a~~L~~ag~~V~li~r~ 32 (307)
T PRK06522 3 IAILGAGAIGGLFGARLAQAGHDVTLVARG 32 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999991499999999998489988999788
No 368
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.031 Score=35.07 Aligned_cols=35 Identities=37% Similarity=0.456 Sum_probs=30.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 48999898579999999998799399997888862
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
-|-|||||-||-.||.++++.|.+|.|.|-...-+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 25897565445199999987698379997045668
No 369
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=95.63 E-value=0.0057 Score=40.38 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHC-CCCCCCCHHHHHHCCC-CCCCCEEEEECCCCEEEEECCCEEECCCCEE
Q ss_conf 2122210012201-2332210013442022-3431012440367402110232243057422
Q gi|254780675|r 230 EISQFVQRSLQKR-GIKILTESKISSVKQK-GDMVSVQVERKDGSVSSMQAEKLLLSAGVQG 289 (481)
Q Consensus 230 ~~~~~~~~~l~~~-Gv~i~~~~~v~~v~~~-~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~P 289 (481)
++.+.+++.+.+. |+.++ +.++.+|..+ ...-.|.. .+| ++|.+-.|+-|+|..|
T Consensus 92 ~L~~~l~~~~~~~sG~~~~-~~ka~~~~~~~~~~~~v~~--~~g--~~i~Ar~V~Da~G~~~ 148 (419)
T TIGR01790 92 QLHEELLQKCPEGSGVLWL-EAKAIKVEADAVSLSLVEC--AGG--QRIQARLVIDARGFKP 148 (419)
T ss_pred HHHHHHHHHHHCCCCEEEE-HHHHHHHHHHHCCCCEEEC--CCC--EEEEEEEEEECCCCCC
T ss_conf 9999999862003761330-1356666544055111442--897--3784007883257776
No 370
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.63 E-value=0.003 Score=42.44 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98643489998985799999999987993999978888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL 38 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~ 38 (481)
|++ |+|||||-.|+++|++|++.|.+|+|||++..
T Consensus 1 m~~---V~VIGaGivGlstA~~La~~G~~VtviDr~~~ 35 (410)
T PRK12409 1 MSH---IAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CCC---EEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 995---99989839999999999978991899969899
No 371
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=95.62 E-value=0.0077 Score=39.44 Aligned_cols=60 Identities=33% Similarity=0.514 Sum_probs=40.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CC-----CE-----EEEEECCCCCHHHHHHHHHHH-HHHHHH
Q ss_conf 4899989857999999999879939999788--88-----62-----463256737088999999999-998421
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA--GL-----GG-----ICLNWGCIPTKSLLRSAEILD-HIQNAQ 67 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~--~~-----GG-----tC~~~GCiPsK~l~~~a~~~~-~~~~~~ 67 (481)
.|.|||||=||-.||=++|+.|.+|.|.|-. ++ -+ .|.|. .=+|+|-.++.++. .+++..
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNs--lg~~~l~~aaGlLk~Emr~L~ 74 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNS--LGAKELARAAGLLKEEMRKLD 74 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCH--HCCCCCCCCCCHHHHHHHHHH
T ss_conf 3689718853468999998489727997538765778766666022320210--110101201236899988630
No 372
>PRK07208 hypothetical protein; Provisional
Probab=95.61 E-value=0.0032 Score=42.15 Aligned_cols=40 Identities=38% Similarity=0.680 Sum_probs=36.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEE
Q ss_conf 43489998985799999999987993999978-88862463
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICL 43 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~ 43 (481)
+=+|+||||||+|++||.+|++.|.+|+|+|+ +.+||-|-
T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vGGl~~ 43 (474)
T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEVGGISR 43 (474)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 87599989768999999999868997599978998754477
No 373
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.60 E-value=0.0036 Score=41.86 Aligned_cols=58 Identities=19% Similarity=0.329 Sum_probs=41.6
Q ss_pred CCCCCHHHHHC-CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 22210012201-233221001344202234310124403674021102322430574220000
Q gi|254780675|r 232 SQFVQRSLQKR-GIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 232 ~~~~~~~l~~~-Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
.+.+.+.+++. +++++++++++.++.+++++.++ +.||+ ++++|.|+-|=|.+-.+..
T Consensus 112 ~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~--~~dG~--~~~adlvVGADG~~S~vR~ 170 (396)
T PRK08163 112 HLSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVF--DQQGN--RWTGDALIGCDGVKSVVRQ 170 (396)
T ss_pred HHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEE--ECCCC--EEEEEEEEECCCCCCHHHH
T ss_conf 99999999856981787099999999539979999--88998--9987699964887736889
No 374
>KOG1298 consensus
Probab=95.57 E-value=0.015 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCEEC
Q ss_conf 32156543321000232101333100000
Q gi|254780675|r 191 LIVMGSGAIGVEFSSFYKSLDVDVSLIEV 219 (481)
Q Consensus 191 ivIiGgG~ig~E~A~~l~~lG~~Vtli~~ 219 (481)
++|||+|..|.-+|..|++-|.+|++|||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGRrVhVIER 76 (509)
T KOG1298 48 VIIVGAGVAGSALAYALAKDGRRVHVIER 76 (509)
T ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 79988862278999998507857999963
No 375
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.57 E-value=0.0043 Score=41.24 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=29.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|-| |+|||+|.-|...|-++++.|.+|++|.++
T Consensus 2 mmk---I~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341)
T PRK08229 2 MAR---ICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 477---999896799999999998589987999567
No 376
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=95.57 E-value=0.0098 Score=38.65 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHH---CCCCC-CCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 21222100122012332210013442---02234-3101244036740211023224305742
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSV---KQKGD-MVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v---~~~~~-~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
|+.+-|+++-++.|..+++++.-.++ ..+.. +-.|+++ .||+..+|+||.+.=|=|..
T Consensus 104 EvtrDL~~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~-~dG~~~~~dCDfIAGCDGFH 165 (393)
T TIGR02360 104 EVTRDLYEAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFE-RDGEEHRIDCDFIAGCDGFH 165 (393)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEE-ECCCEEEEEEEEEECCCCCC
T ss_conf 577889999986389556411432112656788895258777-87917776402675278886
No 377
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.55 E-value=0.0051 Score=40.69 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 434899989857999999999879939999788
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
+=-|+|||+|.-|...|-++++.|.+|+++-++
T Consensus 5 ~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~ 37 (313)
T PRK06249 5 TPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 888999991499999999999669956999675
No 378
>KOG0029 consensus
Probab=95.50 E-value=0.0042 Score=41.31 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHCCCCCC-CCEEEEECCCCEEEEECCCEEECC
Q ss_conf 2332210013442022343-101244036740211023224305
Q gi|254780675|r 243 GIKILTESKISSVKQKGDM-VSVQVERKDGSVSSMQAEKLLLSA 285 (481)
Q Consensus 243 Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG~~~~i~~D~vl~a~ 285 (481)
|.+|+++..+..|...+++ +.+++++.++ .++|.++++.
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~----~~~d~vvvt~ 267 (501)
T KOG0029 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDG----YEADAVVVTV 267 (501)
T ss_pred CCCEEECEEEEEEEEECCCCEEEEEECCCE----EEEEEEEEEE
T ss_conf 863352216688897158834799977984----5840799970
No 379
>PRK06126 hypothetical protein; Provisional
Probab=95.48 E-value=0.0038 Score=41.64 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=23.2
Q ss_pred ECCCCEEECCCCCC-CCCCCCCCCCHHHHHHHHCCC
Q ss_conf 02585883044455-324441232025555430246
Q gi|254780675|r 317 NVPGIYAIGDVAGA-PMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 317 s~p~IyA~GDv~g~-~~l~~~A~~qg~~aa~~i~~~ 351 (481)
...+||-+||++.. +|+.=..+..|.-=|.|+.+|
T Consensus 301 r~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWK 336 (545)
T PRK06126 301 RKGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLGWK 336 (545)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 579689701300125897665102228789989988
No 380
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=95.48 E-value=0.02 Score=36.47 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=41.3
Q ss_pred EEECCCCEEEEEC--------C--CCCCCCC-CC---CC-EEEEECCCC----EE-ECCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 2430574220000--------2--3222112-35---73-266424874----23-025858830444553244412320
Q gi|254780675|r 281 LLLSAGVQGNIEN--------I--GLEKIGV-KT---SN-GCIIVDGYG----RT-NVPGIYAIGDVAGAPMLAHKAEHE 340 (481)
Q Consensus 281 vl~a~Gr~Pn~~~--------L--~Le~~gi-~~---~~-g~i~vd~~~----qT-s~p~IyA~GDv~g~~~l~~~A~~q 340 (481)
++.-+|.+-+... | +|+|+-+ ++ .| -+|.-+.-| +- +..+||++|-.+|.-..+- |...
T Consensus 283 L~n~VGFQT~L~wgeQkrVfrLIPgLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGvEGYva-s~A~ 361 (444)
T TIGR00137 283 LYNLVGFQTKLKWGEQKRVFRLIPGLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGVEGYVA-SAAS 361 (444)
T ss_pred EEEEEEEEECCEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCCHHHHH-HHHH
T ss_conf 231002221010135551444057843147885074311111276356557530477133133140003035776-6530
Q ss_pred HHHHHHHHCCCC
Q ss_conf 255554302466
Q gi|254780675|r 341 GIICIEKIAGKS 352 (481)
Q Consensus 341 g~~aa~~i~~~~ 352 (481)
|.+|+-|.+.-.
T Consensus 362 G~lAGiNAarLa 373 (444)
T TIGR00137 362 GLLAGINAARLA 373 (444)
T ss_pred HHHHHHHHHHHH
T ss_conf 147777788775
No 381
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=95.44 E-value=0.0064 Score=40.01 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 899989857999999999879--939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLG--FKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G--~~V~liEk~ 36 (481)
|+|||+|.-|...+.+|++.| .+|++|.++
T Consensus 2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68995178899999998731899518999887
No 382
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=95.44 E-value=0.021 Score=36.28 Aligned_cols=34 Identities=41% Similarity=0.527 Sum_probs=29.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 6434899989857999999999879--939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~ 36 (481)
.+-|++|||+|-|||-||+.+|+.+ ++|+||-|=
T Consensus 2 ~~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKV 37 (585)
T TIGR01176 2 LQADIAVIGAGGAGLRAAIAAAEANPHLDVALISKV 37 (585)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 432367883784468999999840898537898511
No 383
>PRK07233 hypothetical protein; Provisional
Probab=95.43 E-value=0.0041 Score=41.38 Aligned_cols=36 Identities=42% Similarity=0.674 Sum_probs=33.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEE
Q ss_conf 89998985799999999987993999978-8886246
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGIC 42 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC 42 (481)
|+|||||.+||+||.+|++.|.+|+|+|+ +.+||-|
T Consensus 2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~ 38 (430)
T PRK07233 2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLA 38 (430)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 8999977899999999983999889995899895997
No 384
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.38 E-value=0.0043 Score=41.23 Aligned_cols=44 Identities=14% Similarity=0.356 Sum_probs=34.8
Q ss_pred HHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 201233221001344202234310124403674021102322430574
Q gi|254780675|r 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 240 ~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
+..|.+|+++++|++|+.+++++.|+. .+| +++++|.|++|+.-
T Consensus 230 ~~lg~~i~l~~~V~~I~~~~~~~~v~~--~~g--~~~~aD~VV~a~p~ 273 (452)
T PRK11883 230 EKLPATIHKSTSVTKIDKSGDGYEITL--SNG--GEITADAVIVAVPH 273 (452)
T ss_pred HHCCCEEEECCEEEEEEEECCEEEEEE--CCC--CEEECCEEEECCCH
T ss_conf 865997996888889999399899998--899--69995989989898
No 385
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=95.38 E-value=0.043 Score=34.02 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=57.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 48999898579999999998799399997888862463256737088999999999998421178213487544999999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIV 85 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (481)
-++|||||.=+...|---+-+|.+|+||=|+.. . .+ .|| +
T Consensus 187 ~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~--------------------i------L~----------GFD-~--- 226 (478)
T TIGR01424 187 SILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEK--------------------I------LR----------GFD-D--- 226 (478)
T ss_pred EEEEECCCEEEEEHHHHHCCCCCEEEEEECCCC--------------------C------CC----------CCC-H---
T ss_conf 689986760012022232367832523451665--------------------4------67----------686-8---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 9999999985344687630141421000001----122221002368752001355554322586389972455257543
Q gi|254780675|r 86 KRSRDISHRLNRGVEFLMHKNKVDIIWGKAT----LKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR 161 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~----f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~ 161 (481)
.++..+...|++.||.++-+.-. =.++.++.+.... ....++.||.+++|||-.
T Consensus 227 --------d~R~~~~~~le~~Gi~i~~~~~~~~i~~~~~GR~~~~~sG--------------e~~~~~vAd~vl~AtGR~ 284 (478)
T TIGR01424 227 --------DMRAELAEELEERGIRIVPKDSVTSIEKVDDGRLKVTLSG--------------EKDEEIVADVVLFATGRV 284 (478)
T ss_pred --------HHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEEEC--------------CCCCCEEEEEEEEECCCC
T ss_conf --------9999999987529738950104436420789878999746--------------899816543323200887
Q ss_pred CC
Q ss_conf 11
Q gi|254780675|r 162 PR 163 (481)
Q Consensus 162 p~ 163 (481)
|+
T Consensus 285 Pn 286 (478)
T TIGR01424 285 PN 286 (478)
T ss_pred CC
T ss_conf 76
No 386
>PRK08132 hypothetical protein; Provisional
Probab=95.36 E-value=0.0047 Score=41.01 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=18.3
Q ss_pred CCCEEEEEEEEEECCCCCC--CCCCCCCCCC
Q ss_conf 5863899724552575431--1101113455
Q gi|254780675|r 144 LGEGTYKAKHIIIATGARP--RHIEGIEPDS 172 (481)
Q Consensus 144 ~~~~~~~a~~ivIATGs~p--~~~~g~~~~~ 172 (481)
.+..+++|+|+|=|-|++. +..-|++..+
T Consensus 167 ~g~~~vrA~ylVGaDGarS~VR~~lGi~~~G 197 (549)
T PRK08132 167 DGPYTLEADWVIACDGARSPLREMLGLEFKG 197 (549)
T ss_pred CCCEEEEEEEEEECCCCCCHHHHHCCCCCCC
T ss_conf 9868999889986377877358863998757
No 387
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.31 E-value=0.033 Score=34.83 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=23.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.|+|||+|-+|+.|+..+..+|.+|.++|++
T Consensus 22 ~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~ 52 (150)
T pfam01262 22 KVVVIGGGVVGLGAAATAKGLGAPVTILDVR 52 (150)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7999898789999999998679989997299
No 388
>PRK08244 hypothetical protein; Provisional
Probab=95.29 E-value=0.0051 Score=40.71 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=18.6
Q ss_pred CCCEEEEEEEEEECCCCCC--CCCCCCCCC
Q ss_conf 5863899724552575431--110111345
Q gi|254780675|r 144 LGEGTYKAKHIIIATGARP--RHIEGIEPD 171 (481)
Q Consensus 144 ~~~~~~~a~~ivIATGs~p--~~~~g~~~~ 171 (481)
.++.+++++++|=|-|++. +..-+++..
T Consensus 141 ~g~~~i~a~ylVGaDGa~S~VR~~lgI~~~ 170 (494)
T PRK08244 141 DGLRTLTSLYAVGADGAGSTVRKQAGIAFS 170 (494)
T ss_pred CCCEEEEEEEEEEECCCCCHHHHHCCCCCC
T ss_conf 976899877999824667267987599854
No 389
>PRK06834 hypothetical protein; Provisional
Probab=95.23 E-value=0.0055 Score=40.45 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=20.4
Q ss_pred CCCCEEECCCCCC-CCCCCCCCCCHHHHHHHHCC
Q ss_conf 2585883044455-32444123202555543024
Q gi|254780675|r 318 VPGIYAIGDVAGA-PMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 318 ~p~IyA~GDv~g~-~~l~~~A~~qg~~aa~~i~~ 350 (481)
..+||-+||++.. +|+.=..+..|.-=|.|+.+
T Consensus 264 ~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaW 297 (488)
T PRK06834 264 DGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGW 297 (488)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7857880350114797646521123778888999
No 390
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=95.22 E-value=0.0077 Score=39.41 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=24.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|||+|.-|...|-++++.|.+|+++.++
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~ 30 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARG 30 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999966899999999999779928999756
No 391
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.18 E-value=0.0049 Score=40.83 Aligned_cols=39 Identities=36% Similarity=0.634 Sum_probs=34.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCCC
Q ss_conf 98643489998985799999999987993999978--8886
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLG 39 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk--~~~G 39 (481)
|.++|||+|||||.||..||..++++|.+++||-. +.+|
T Consensus 3 ~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig 43 (621)
T PRK05192 3 YPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 43 (621)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 88879889989757999999999967996799965813115
No 392
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.17 E-value=0.0048 Score=40.92 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=29.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+|||||-.|+++|.+|++.|.+|+||||..
T Consensus 3 VvIIGaGi~G~stA~~La~~G~~V~vler~~ 33 (416)
T PRK00711 3 VVVLGSGVVGVTSAWYLARAGHEVTVIDRQP 33 (416)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999944999999999996899689996999
No 393
>KOG2614 consensus
Probab=95.14 E-value=0.009 Score=38.93 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=18.9
Q ss_pred CCEEECCCCCC--CC---CCCCCCCCHHHHHHHHCC
Q ss_conf 85883044455--32---444123202555543024
Q gi|254780675|r 320 GIYAIGDVAGA--PM---LAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 320 ~IyA~GDv~g~--~~---l~~~A~~qg~~aa~~i~~ 350 (481)
++--+||++.. |. =..-|...+.+.++-+..
T Consensus 289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~ 324 (420)
T KOG2614 289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDE 324 (420)
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 189963431336876665543247889999999998
No 394
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.08 E-value=0.0062 Score=40.09 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.3
Q ss_pred CEEEEEEEEEECCCCCCC
Q ss_conf 638997245525754311
Q gi|254780675|r 146 EGTYKAKHIIIATGARPR 163 (481)
Q Consensus 146 ~~~~~a~~ivIATGs~p~ 163 (481)
..+++++++|=|-|++..
T Consensus 160 ~~~ira~ylVGaDGa~S~ 177 (554)
T PRK06183 160 RETVRARYVVGCDGANSF 177 (554)
T ss_pred EEEEEEEEEEECCCCCCH
T ss_conf 799997689971788707
No 395
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.99 E-value=0.0051 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHH-HCCCCCCCCEECCCC
Q ss_conf 33344432156543321000232-101333100000000
Q gi|254780675|r 185 SKTPKSLIVMGSGAIGVEFSSFY-KSLDVDVSLIEVKDR 222 (481)
Q Consensus 185 ~~~p~~ivIiGgG~ig~E~A~~l-~~lG~~Vtli~~~~~ 222 (481)
+..|-|++|||+|+.|+=.|+.| ++-+.+|+++||.|.
T Consensus 36 ~~rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~ 74 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 887657999888838999999996389977988826898
No 396
>PRK07190 hypothetical protein; Provisional
Probab=94.97 E-value=0.0085 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.7
Q ss_pred CEEEEEEEEEECCCCCC
Q ss_conf 63899724552575431
Q gi|254780675|r 146 EGTYKAKHIIIATGARP 162 (481)
Q Consensus 146 ~~~~~a~~ivIATGs~p 162 (481)
..+++++|+|=|-|++.
T Consensus 149 ge~i~a~ylVGcDGa~S 165 (480)
T PRK07190 149 GERIQSRYVIGADGSRS 165 (480)
T ss_pred CCEEEEEEEEEECCCCC
T ss_conf 98998888886067761
No 397
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.93 E-value=0.018 Score=36.78 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89998985799999999987993999978
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY 35 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk 35 (481)
-+|||||-=|+.||..+...|+.+.+++-
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~ 176 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHI 176 (793)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 58975511416788788747973489873
No 398
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.92 E-value=0.008 Score=39.30 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=31.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4348999898579999999998799399997888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++||+||||||+|+++|+.+++.|.+|+|||+.+
T Consensus 2 ~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALEGSGLEVLLVDGGP 35 (405)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9889999905999999999961899789995899
No 399
>KOG2960 consensus
Probab=94.90 E-value=0.0066 Score=39.91 Aligned_cols=36 Identities=42% Similarity=0.669 Sum_probs=28.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCEEEEECC-CCCE
Q ss_conf 3489998985799999999987--9939999788-8862
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQL--GFKVAIVEYA-GLGG 40 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~-~~GG 40 (481)
-||+|+|+|.||++||...++. .++|+|||.. ..||
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred CCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 456998778665414666303699846999970036997
No 400
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=0.02 Score=36.38 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCE-EEEE--------CCCCEE-ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 322211235732-6642--------487423-025858830444553244412320255554302466443212232002
Q gi|254780675|r 295 GLEKIGVKTSNG-CIIV--------DGYGRT-NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPG 364 (481)
Q Consensus 295 ~Le~~gi~~~~g-~i~v--------d~~~qT-s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~ 364 (481)
|||++-+.- .| .|.- ...|+| .++|.|-+|-++|-... -.|..||.+|+-|.+.+....+ ..++
T Consensus 327 GlEna~i~r-pgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGY-EEAAaQGliAGiNAal~~~~~~---p~il- 400 (621)
T COG0445 327 GLENAEILR-PGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINAALKVQGKE---PFIL- 400 (621)
T ss_pred CCCCCEEEC-CCEEEEECCCCHHHCCCCHHHCEECCEEECCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCC---CCCC-
T ss_conf 612334621-311566323074545541322264462775513687336-7787624888899999746899---8243-
Q ss_pred EEEEEHHHEEECCCHHHHHCCCCC
Q ss_conf 454303340001496876107972
Q gi|254780675|r 365 CTYCNPQVASIGLTEEKARSQGLD 388 (481)
Q Consensus 365 ~vft~P~ia~vG~te~ea~~~g~~ 388 (481)
.-.=|++|.--+.+--.|.+
T Consensus 401 ----~R~eaYIGVlIDDLvTkGt~ 420 (621)
T COG0445 401 ----RRDEAYIGVLIDDLVTKGTN 420 (621)
T ss_pred ----CCCCCEEEEEEHHHHCCCCC
T ss_conf ----66751145674011137998
No 401
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.84 E-value=0.0074 Score=39.56 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCC
Q ss_conf 3444321565433210002321013331000000001222222
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDS 229 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~ 229 (481)
.|.+++|+|||++|.|-|-+...+|.+||++++...=|+..|.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd 209 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD 209 (371)
T ss_pred CCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 7760899877612406999972368706999527788764067
No 402
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=94.82 E-value=0.023 Score=35.99 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=95.9
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CCEEEEECCC--CEEEEECCCEEECCCCEEEEECC-----C----CCC
Q ss_conf 1222100122012332210013442022343-1012440367--40211023224305742200002-----3----222
Q gi|254780675|r 231 ISQFVQRSLQKRGIKILTESKISSVKQKGDM-VSVQVERKDG--SVSSMQAEKLLLSAGVQGNIENI-----G----LEK 298 (481)
Q Consensus 231 ~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~v~~~~~dG--~~~~i~~D~vl~a~Gr~Pn~~~L-----~----Le~ 298 (481)
.+.+|..+++..+++|.+.+-++.|.-+++. +-|+++..+. .+.+--.-.||++.|-.-.-+-| | |.+
T Consensus 201 araYL~pA~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL~lSGiG~aehL~e 280 (540)
T TIGR01810 201 ARAYLDPALKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLLQLSGIGDAEHLKE 280 (540)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 46664466407872001422220003308837998882289733000012445788334121358997628971799985
Q ss_pred CCCCCCCEEEEECCCCEEECCCCEEECCCCCCCCCCC--CCCCCHHHHHHHHCCCCCCC------------CCCCCCCEE
Q ss_conf 1123573266424874230258588304445532444--12320255554302466443------------212232002
Q gi|254780675|r 299 IGVKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAH--KAEHEGIICIEKIAGKSKVY------------PLDKSKIPG 364 (481)
Q Consensus 299 ~gi~~~~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~--~A~~qg~~aa~~i~~~~~~~------------~~d~~~ip~ 364 (481)
.||++.-..+=|-++|| .+=-+|.==.|.-..-|-+ .=..|+.+=+.-|+++.-.- ..+--.-|.
T Consensus 281 ~gI~~~~~lPGVGeNl~-DHlE~Y~Q~~ck~PVSlyp~L~w~~~p~iGaqWlfg~~G~gaSNhFE~ggF~RS~~~v~~Pn 359 (540)
T TIGR01810 281 LGIELKVELPGVGENLQ-DHLEVYLQYACKKPVSLYPALNWLKQPVIGAQWLFGKKGVGASNHFEAGGFVRSADDVKYPN 359 (540)
T ss_pred CCCCEEECCCCCCCCHH-HHHHHHHHHHCCCCEECCCHHHHHCCCCCCHHHHCCCCCCEEEECCCCCCEEECCCCCCCCC
T ss_conf 58960652787876334-35642322422887435602565438722101110476520440202431101466788885
Q ss_pred EEEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEEE
Q ss_conf 4543033400014968761079727999996463823320789821899999
Q gi|254780675|r 365 CTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIF 416 (481)
Q Consensus 365 ~vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~~kiv~ 416 (481)
+.|=..+||--=--.+-+++.|+-|-|+.. ....+|.+||=-
T Consensus 360 i~yHFLPvAi~YdG~~A~k~HGfQvHVG~~----------~S~SRGhv~ikS 401 (540)
T TIGR01810 360 IQYHFLPVAIRYDGKKAAKEHGFQVHVGSM----------LSKSRGHVKIKS 401 (540)
T ss_pred CEEECCCEEEECCCHHHHHCCCCEEEECCC----------CCCCCCCEEEEC
T ss_conf 201014368722743566607975887777----------778653047630
No 403
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.76 E-value=0.0085 Score=39.11 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=37.9
Q ss_pred CCCCCCCC-C----CCEEEE----ECCCCEE-ECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 32221123-5----732664----2487423-025858830444553244412320255554302466
Q gi|254780675|r 295 GLEKIGVK-T----SNGCII----VDGYGRT-NVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 295 ~Le~~gi~-~----~~g~i~----vd~~~qT-s~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~~ 352 (481)
|||++-+- . ..-+|. .+.+||| .+|++|-+|-++|--.. -.|..||.+|+-|++.+.
T Consensus 299 GLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GY-eEAAAqGliAGiNAa~~~ 365 (434)
T PRK05335 299 GLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGY-VESAASGLLAGINAARLA 365 (434)
T ss_pred CCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 7342335432233301104786554844163487982771133674188-999998899999999996
No 404
>KOG1439 consensus
Probab=94.71 E-value=0.015 Score=37.39 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=36.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEE
Q ss_conf 9864348999898579999999998799399997888-86246
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGIC 42 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC 42 (481)
|.+.|||+|.|.|---...+..++..|++|+.||++. +||+.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCCCC
T ss_conf 9875149997377364100000257695899970788777644
No 405
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.70 E-value=0.0097 Score=38.69 Aligned_cols=37 Identities=38% Similarity=0.572 Sum_probs=34.3
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864-348999898579999999998799399997888
Q gi|254780675|r 1 MSRL-YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~-yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
||.+ |||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~ 38 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAA 38 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999848999936999999999986699789994899
No 406
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.70 E-value=0.053 Score=33.34 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=31.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 899989857999999999879939999788-8862
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
|.|||+|-||+++|..+...|.+|-|.|.. .+||
T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GG 36 (474)
T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGG 36 (474)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 57872567789999999738972788524332375
No 407
>PRK08275 putative oxidoreductase; Provisional
Probab=94.63 E-value=0.015 Score=37.37 Aligned_cols=35 Identities=40% Similarity=0.619 Sum_probs=32.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 43489998985799999999987--993999978888
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQL--GFKVAIVEYAGL 38 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~~~ 38 (481)
++||+|||+|.||+.||+.|++. |++|+||+|..+
T Consensus 9 ~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 7288999971999999999998689897999979998
No 408
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.57 E-value=0.021 Score=36.30 Aligned_cols=45 Identities=36% Similarity=0.347 Sum_probs=32.6
Q ss_pred EEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 266424874230258588304445532444123202555543024
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~ 350 (481)
-.|.+|+.+.||.+|+|++||.+|...=-..|...|..+|+.|+.
T Consensus 437 ~ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 437 VRIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR 481 (486)
T ss_pred EEEEECCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 667616201220234477656555211257876102899999999
No 409
>KOG3851 consensus
Probab=94.56 E-value=0.026 Score=35.58 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=27.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCC-CEEEEECC
Q ss_conf 864348999898579999999998-799-39999788
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQ-LGF-KVAIVEYA 36 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~-~G~-~V~liEk~ 36 (481)
+++|.|+|+|||.+|+..|-+..+ .|. +|.|||..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 0034899986786305789999865689855775521
No 410
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.065 Score=32.69 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 48999898579999999998799399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
.++|||+|.-|++.|..+.+.|..|++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89998985788999999987899089997688
No 411
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.51 E-value=0.011 Score=38.33 Aligned_cols=36 Identities=39% Similarity=0.689 Sum_probs=33.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEE
Q ss_conf 89998985799999999987993999978-8886246
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGIC 42 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC 42 (481)
|+|||||.|||+||.+|++.|.+|+|+|+ +++||-|
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~ 37 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRA 37 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 2998786899999999987899889994899881676
No 412
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.49 E-value=0.02 Score=36.47 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=33.4
Q ss_pred CCEEEEECCCCEE-ECCCCEEECCCCC-CC----CCCCCCCC----CHHHHHHHHCCCC
Q ss_conf 7326642487423-0258588304445-53----24441232----0255554302466
Q gi|254780675|r 304 SNGCIIVDGYGRT-NVPGIYAIGDVAG-AP----MLAHKAEH----EGIICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~qT-s~p~IyA~GDv~g-~~----~l~~~A~~----qg~~aa~~i~~~~ 352 (481)
.-|+|.+|...+| ++||.||+|+|++ +. .|...+.. .|++|+++++...
T Consensus 345 ~mGGi~id~~~~~t~I~GLyAaGE~ag~g~HGanRLggnsl~e~~VfG~~Ag~~aa~~~ 403 (566)
T PRK06452 345 YMGGIDVDITGRNPDLIGLFAAGEAACVSVHGANRLGSNSLLETLVFGRETGRAVVEFL 403 (566)
T ss_pred CCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36882467688867776324336755146788886414558999999999999999998
No 413
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.46 E-value=0.011 Score=38.28 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 434899989857999999999879--939999788
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLG--FKVAIVEYA 36 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~ 36 (481)
++||+||||||+|+++|+.|++.| .+|+++|+.
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~ 35 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAA 35 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98399999469999999999846999669998288
No 414
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=94.46 E-value=0.018 Score=36.78 Aligned_cols=96 Identities=25% Similarity=0.450 Sum_probs=69.6
Q ss_pred CCCCCHHHHHC-CCCCCCCHHHHHHCCCCC-CCCEEEEE-CC-CCEEEEECCCEEECCCCEEEEECCC-CCCCCCCCCC-
Q ss_conf 22210012201-233221001344202234-31012440-36-7402110232243057422000023-2221123573-
Q gi|254780675|r 232 SQFVQRSLQKR-GIKILTESKISSVKQKGD-MVSVQVER-KD-GSVSSMQAEKLLLSAGVQGNIENIG-LEKIGVKTSN- 305 (481)
Q Consensus 232 ~~~~~~~l~~~-Gv~i~~~~~v~~v~~~~~-~~~v~~~~-~d-G~~~~i~~D~vl~a~Gr~Pn~~~L~-Le~~gi~~~~- 305 (481)
.+-+.++++.+ |.++++|.+|+.++++.| ...|++.+ .+ |..++|.+-.|++-.|= ..|. |.++||.--+
T Consensus 181 t~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG----~AL~lLq~SGIpevKG 256 (487)
T TIGR01320 181 TKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGG----GALPLLQKSGIPEVKG 256 (487)
T ss_pred HHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCC----CHHHHHHHCCCCCCCC
T ss_conf 999999970289816763850001101058853788412208887626766778971574----1688988667987665
Q ss_pred --EEEEECCCCEEECCC--------CEEECCCC-CCCCC
Q ss_conf --266424874230258--------58830444-55324
Q gi|254780675|r 306 --GCIIVDGYGRTNVPG--------IYAIGDVA-GAPML 333 (481)
Q Consensus 306 --g~i~vd~~~qTs~p~--------IyA~GDv~-g~~~l 333 (481)
|+++--.+||.++|- || |-+. |-||+
T Consensus 257 FaGFPvSG~fLR~~Npe~~~qH~AKVY--G~A~vGAPPm 293 (487)
T TIGR01320 257 FAGFPVSGLFLRCSNPELVEQHRAKVY--GQASVGAPPM 293 (487)
T ss_pred CCCCCCCCEECCCCCHHHHHHHCCCCC--CCCCCCCCCC
T ss_conf 336575550001788799985056215--7788764888
No 415
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.38 E-value=0.017 Score=36.91 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=26.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
+.|+|+|.-|...|.++++.|..|+++-+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 999878789999999998589957998108
No 416
>PRK09126 hypothetical protein; Provisional
Probab=94.34 E-value=0.011 Score=38.28 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.6
Q ss_pred CCCCHHHHH-CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC
Q ss_conf 221001220-1233221001344202234310124403674021102322430574220000
Q gi|254780675|r 233 QFVQRSLQK-RGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN 293 (481)
Q Consensus 233 ~~~~~~l~~-~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~ 293 (481)
+.+.+.+.+ .+|++++++++++++.+++++.+++. ||+ ++++|+|+-|=|..-.+..
T Consensus 114 ~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~--~g~--~i~a~llVgADG~~S~vR~ 171 (392)
T PRK09126 114 RAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTLA--NGR--RLTARLLVAADSRFSATRR 171 (392)
T ss_pred HHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEEC--CCC--EEEEEEEEEECCCCCHHHC
T ss_conf 999999985899699869888999975980599985--898--8887799980688861110
No 417
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.33 E-value=0.023 Score=35.99 Aligned_cols=48 Identities=29% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCEEEEECCCCEEECCCCEEECCCC-CCC----CCCCCCCC----CHHHHHHHHCCC
Q ss_conf 7326642487423025858830444-553----24441232----025555430246
Q gi|254780675|r 304 SNGCIIVDGYGRTNVPGIYAIGDVA-GAP----MLAHKAEH----EGIICIEKIAGK 351 (481)
Q Consensus 304 ~~g~i~vd~~~qTs~p~IyA~GDv~-g~~----~l~~~A~~----qg~~aa~~i~~~ 351 (481)
.-|+|.||.+.||+.||+||+|+|+ ++. .|...|.. -|++|+++|...
T Consensus 330 ~mGGi~id~~~~t~i~GLyAaGEva~~GvHGaNRLggnSLle~~VfGr~Ag~~i~~~ 386 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred CCCCEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 066967999985348997882776567877401058889999999999999999999
No 418
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.32 E-value=0.079 Score=32.09 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++|+|+|--|...|..|++.|..|++||+++
T Consensus 3 IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~ 33 (455)
T PRK09496 3 IIILGAGQVGGTLAERLVGENNDVTVIDTDE 33 (455)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9999988899999999986899799998999
No 419
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=94.18 E-value=0.096 Score=31.45 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCC-CCCCCCCCCCHHHHHC--CCCCCCCHHHHHHCCCCCCCCE
Q ss_conf 444321565433210002321013331000000001222-2222122210012201--2332210013442022343101
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPV-EDSEISQFVQRSLQKR--GIKILTESKISSVKQKGDMVSV 264 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~--Gv~i~~~~~v~~v~~~~~~~~v 264 (481)
..++.|+|=|=+|+=.|..|+.||++|.+--|..+-|.+ ++.-+.-.-.+.|++. .++|..||-+.-|-..+
T Consensus 152 gS~v~VlGfGRtG~tiAr~f~aLGA~V~V~AR~~~dlARI~E~g~~P~~~~~L~~~v~e~DIviNTiPaLvlt~~----- 226 (288)
T TIGR02853 152 GSNVMVLGFGRTGMTIARTFSALGARVSVGARSSADLARITEMGLEPVPLNKLEEKVAEIDIVINTIPALVLTKD----- 226 (288)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCCHH-----
T ss_conf 134578844705689999997269805753178367899999606882716788765000247706763003658-----
Q ss_pred EEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf 24403674021102322430574220
Q gi|254780675|r 265 QVERKDGSVSSMQAEKLLLSAGVQGN 290 (481)
Q Consensus 265 ~~~~~dG~~~~i~~D~vl~a~Gr~Pn 290 (481)
-.+.++.+.|++=.=-+|=
T Consensus 227 -------~l~~lp~~AviiDLAS~PG 245 (288)
T TIGR02853 227 -------VLSKLPKHAVIIDLASKPG 245 (288)
T ss_pred -------HHHHCCCCCEEEEECCCCC
T ss_conf -------9952685848997327848
No 420
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.015 Score=37.31 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|+|.|-.|+++|..|.+.|.+|.++|..
T Consensus 17 v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~ 46 (481)
T PRK01438 17 VVVAGLGVSGFPAADALHELGASVTVVADG 46 (481)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999957588999999999679989999799
No 421
>KOG4405 consensus
Probab=94.07 E-value=0.064 Score=32.75 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=34.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEE
Q ss_conf 64348999898579999999998799399997888-8624
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGI 41 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGt 41 (481)
..|||||||.|-----.|..+++.|.+|+=+|++. +||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 0343899817984899999860037705860686555776
No 422
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=94.02 E-value=0.089 Score=31.70 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEC--CC-CEEEEECCCEEECCC
Q ss_conf 133310000000012222222122210012201233221001344202234310124403--67-402110232243057
Q gi|254780675|r 210 LDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK--DG-SVSSMQAEKLLLSAG 286 (481)
Q Consensus 210 lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~--dG-~~~~i~~D~vl~a~G 286 (481)
.|+++..++..+. +.+.+-+.+++...|=+++.++.+.++.-+.|...-.+... +| ....+.+|.-+.|..
T Consensus 200 ~Gsk~afldG~P~------erlC~P~v~~~~~~GGe~~~~~~l~~i~l~~d~~v~~f~~~~~~g~~~~~~~~d~y~~a~~ 273 (454)
T TIGR02731 200 YGSKIAFLDGAPP------ERLCQPIVDYITSRGGEVRLNARLKEIVLNEDGSVKAFALADGEGKDSFEVTADAYVSALP 273 (454)
T ss_pred CCCEEEEECCCCH------HHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEHEEEECCCCCCCCEEECCCEEEHHH
T ss_conf 4771676268880------4555789999972488166413100134357762100022044564200111010011112
Q ss_pred CE
Q ss_conf 42
Q gi|254780675|r 287 VQ 288 (481)
Q Consensus 287 r~ 288 (481)
..
T Consensus 274 vd 275 (454)
T TIGR02731 274 VD 275 (454)
T ss_pred HH
T ss_conf 56
No 423
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=94.00 E-value=0.019 Score=36.50 Aligned_cols=28 Identities=36% Similarity=0.704 Sum_probs=23.3
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCCEEEEE
Q ss_conf 89998985-----------79999999998799399997
Q gi|254780675|r 7 IILIGSGP-----------AGYVAAIRAAQLGFKVAIVE 34 (481)
Q Consensus 7 vvIIG~Gp-----------AG~~aA~~~a~~G~~V~liE 34 (481)
|+|||+|| +|--|=+.|++.|.+|+||-
T Consensus 9 vLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVN 47 (1089)
T TIGR01369 9 VLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVN 47 (1089)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999666731131202302478999999876495799975
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.79 E-value=0.09 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCC
Q ss_conf 344432156543321000232101333100000000
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDR 222 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ 222 (481)
.|.+++|||+|..|+.-+....+||..|+..+.++.
T Consensus 164 pPAkVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~ 199 (510)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (510)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 885289974647779999999627978999658788
No 425
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.73 E-value=0.018 Score=36.70 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=18.8
Q ss_pred CCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf 22100134420223431012440367402110232243057
Q gi|254780675|r 246 ILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 246 i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
+..++.+..+.+++++..+++. +| +++++|.|++|+-
T Consensus 241 i~~~~~~~~i~~~~~~~~v~~~--~~--~~~~~d~VV~a~P 277 (466)
T PRK12416 241 VKKGAVTTAVSKQGDRYEISFA--NH--ESIQADYVVLAAP 277 (466)
T ss_pred EECCCEEEEEEECCCCEEEEEC--CC--CEEEECEEEECCC
T ss_conf 7848558889876995899957--99--8787366997688
No 426
>KOG4716 consensus
Probab=93.71 E-value=0.057 Score=33.09 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf 3101244036740211023224305742200002
Q gi|254780675|r 261 MVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 261 ~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
...+..++.+|+.+.+.++.+++|+|-+|...++
T Consensus 145 ~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp~I 178 (503)
T KOG4716 145 PHKIKATNKKGKERFLTAENFVIATGLRPRYPDI 178 (503)
T ss_pred CCEEEEECCCCCEEEEECCEEEEEECCCCCCCCC
T ss_conf 6258985477845786145389972687789999
No 427
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.56 E-value=0.076 Score=32.19 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=12.7
Q ss_pred HHEEEC----CCHHHHHCCCCCEEEEEEECCCC
Q ss_conf 340001----49687610797279999964638
Q gi|254780675|r 371 QVASIG----LTEEKARSQGLDIRVGKHSFSAN 399 (481)
Q Consensus 371 ~ia~vG----~te~ea~~~g~~~~~~~~~~~~~ 399 (481)
++|.-| +.++++...|.++--+.......
T Consensus 323 ~la~~G~~~a~~~n~~l~~Gln~~~G~vt~~~v 355 (371)
T COG0686 323 QLADKGLLKALKDNPALAKGLNTYNGKVTNEAV 355 (371)
T ss_pred HHHCCHHHHHHHCCHHHHCCCHHHCCEECCHHH
T ss_conf 984131888762298886241131564404888
No 428
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=93.56 E-value=0.019 Score=36.65 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=33.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 48999898579999999998799399997888862
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GG 40 (481)
||+|||||.+|+++|+.|++.|.+|+|||++.+|+
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~ 35 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99999927999999999997899599994999887
No 429
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.022 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+|||.|-.|+++|..|.+.|.+|.+.|...
T Consensus 12 i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 12 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999778999999999998869899984886
No 430
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=93.53 E-value=0.024 Score=35.85 Aligned_cols=35 Identities=40% Similarity=0.736 Sum_probs=32.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 48999898579999999998799399997888-862
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGG 40 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GG 40 (481)
.|||||||-|||+||.-||++|++|+|+|... +||
T Consensus 3 ~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GG 38 (499)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGG 38 (499)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 069981872678999999853996799974012787
No 431
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.52 E-value=0.049 Score=33.56 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred CEEECCCCEEECCCCC-CC----CCCCCCCC----CHHHHHHHHCC
Q ss_conf 4230258588304445-53----24441232----02555543024
Q gi|254780675|r 314 GRTNVPGIYAIGDVAG-AP----MLAHKAEH----EGIICIEKIAG 350 (481)
Q Consensus 314 ~qTs~p~IyA~GDv~g-~~----~l~~~A~~----qg~~aa~~i~~ 350 (481)
.+|++||.||+|+|++ +. .|...+.. -|++|+.++..
T Consensus 376 ~~T~I~GLyAaGEva~~GvHGaNRLggnsl~e~~VfG~~Ag~~aa~ 421 (588)
T PRK08958 376 EDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6641475454354232555666543006789999999999999999
No 432
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.47 E-value=0.4 Score=26.97 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.+ |.|||+|.=|.+.|..+++.|.+|.++.++
T Consensus 1 Mmk---I~ViGaGawGtAlA~~la~n~~~V~lw~r~ 33 (325)
T PRK00094 1 MMK---IAVLGAGSWGTALAILLARNGHDVVLWGRD 33 (325)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 988---999898999999999999789978999838
No 433
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=93.46 E-value=0.024 Score=35.82 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC---CCCCCCCCCCCCHHHH--HCCCCCCCCHHHHHHCCCCC------
Q ss_conf 215654332100023210133310000000012---2222221222100122--01233221001344202234------
Q gi|254780675|r 192 IVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL---PVEDSEISQFVQRSLQ--KRGIKILTESKISSVKQKGD------ 260 (481)
Q Consensus 192 vIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll---~~~d~~~~~~~~~~l~--~~Gv~i~~~~~v~~v~~~~~------ 260 (481)
+.||+-+. + -++|+- ++-+|+..-+- .++ ..+.+.+.+.++ ..|.++..+++|.+++..++
T Consensus 195 l~~Gg~P~-~--~S~Y~L----is~le~~~GV~fP~GG~-~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~~ 266 (526)
T TIGR02734 195 LFVGGNPF-T--SSIYAL----ISALEREWGVWFPRGGT-GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVATG 266 (526)
T ss_pred EECCCCCH-H--HHHHHH----HHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEEC
T ss_conf 21069831-6--899999----98754426740156538-8999999999974687469974553114462167423316
Q ss_pred CCCEEEEECCCCEEEEECCCEEECCCCEEEEE-CCCCCCCCCCCCCEEEEECCCCEEEC--CCCEEEC---C-CC-CCCC
Q ss_conf 31012440367402110232243057422000-02322211235732664248742302--5858830---4-44-5532
Q gi|254780675|r 261 MVSVQVERKDGSVSSMQAEKLLLSAGVQGNIE-NIGLEKIGVKTSNGCIIVDGYGRTNV--PGIYAIG---D-VA-GAPM 332 (481)
Q Consensus 261 ~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~-~L~Le~~gi~~~~g~i~vd~~~qTs~--p~IyA~G---D-v~-g~~~ 332 (481)
.-...+.+.+ .+.++||.|+.+.= ..+|. .| |-+ ....-.-+++++... ++.|.+= . +. ..++
T Consensus 267 ~~~~~v~~~~--~~~~~ad~VvSnAD-~~hty~~L-L~~-----~~~~~~~~~~~~~~~~S~slfvlyFGl~Gv~~~~~~ 337 (526)
T TIGR02734 267 GRATAVHLAD--GERLDADAVVSNAD-LVHTYRRL-LGN-----HPRRRKPAASLSRKRPSPSLFVLYFGLLGVEGEWPQ 337 (526)
T ss_pred CEEEEEECCC--CEEEEEEEEEECCC-HHHHHHHH-CCC-----CCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 5243455065--40331127887487-56767751-685-----411355033053236889734434035565778877
Q ss_pred CCCCCCC---CHHHHHHHHCC---CCCCC--C-CCCCCCEEEEEEEHHHEEECC
Q ss_conf 4441232---02555543024---66443--2-122320024543033400014
Q gi|254780675|r 333 LAHKAEH---EGIICIEKIAG---KSKVY--P-LDKSKIPGCTYCNPQVASIGL 377 (481)
Q Consensus 333 l~~~A~~---qg~~aa~~i~~---~~~~~--~-~d~~~ip~~vft~P~ia~vG~ 377 (481)
|+|=-.- .-+-..+.|+. ..... + +=+.+.|+++ |||.+|=-|+
T Consensus 338 L~HHt~~Fg~ry~~~~~~if~~~~~~~L~~D~sly~~~ppS~~-tDP~lAP~G~ 390 (526)
T TIGR02734 338 LAHHTILFGPRYKELFDEIFKGPQKGRLAEDFSLYLHSPPSTV-TDPSLAPPGC 390 (526)
T ss_pred CCCCEEEECHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCC-CCCCCCCCCC
T ss_conf 7864478342233368997078888887200044313788888-8745688988
No 434
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=93.43 E-value=0.072 Score=32.37 Aligned_cols=31 Identities=45% Similarity=0.757 Sum_probs=29.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 3489998985799999999987993999978
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY 35 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk 35 (481)
||++|||+|.||..+|...++.|.++.++-.
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~ 31 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTL 31 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 9068861762003567776541751345540
No 435
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.17 Score=29.59 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCC--CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEE
Q ss_conf 986--4348999898579999999998799399997888-86246
Q gi|254780675|r 1 MSR--LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGIC 42 (481)
Q Consensus 1 Ms~--~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC 42 (481)
|.. .|||+|.|.|----..+..++..|++|+.||++. +|+|.
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 986430018996266899999888622675179970787667533
No 436
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=0.19 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|+|.|-.|+++|..|.++|.+|.+.|..
T Consensus 10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~ 39 (501)
T PRK02006 10 VLVLGLGESGLAMARWCARHGCRLRVADTR 39 (501)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999833688999999999789849999899
No 437
>PRK07121 hypothetical protein; Validated
Probab=93.35 E-value=0.047 Score=33.71 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=35.3
Q ss_pred CCEEEEECCCCEE------ECCCCEEECCCCCCCC----C----CCCCCCCHHHHHHHHCCCC
Q ss_conf 7326642487423------0258588304445532----4----4412320255554302466
Q gi|254780675|r 304 SNGCIIVDGYGRT------NVPGIYAIGDVAGAPM----L----AHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~qT------s~p~IyA~GDv~g~~~----l----~~~A~~qg~~aa~~i~~~~ 352 (481)
.-|+|.+|+.+|+ .+|++||+|.|+++.. + .-.+.--|++|++|++.++
T Consensus 428 T~GGl~id~~~qVld~~g~~IpGLYAaGe~agg~~g~~yl~G~sl~~~~vfGriAG~~AA~~a 490 (491)
T PRK07121 428 TLGGLRVDEDGEVLRADGAPIPGLYAAGRCAVGIASNGYVSGLSLADCSFSGRRAGRHAAARA 490 (491)
T ss_pred ECCCCEECCCCCEECCCCCEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 156800997885788998980997667526568887876468889999999999999999734
No 438
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.29 E-value=0.024 Score=35.85 Aligned_cols=40 Identities=38% Similarity=0.694 Sum_probs=35.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEE
Q ss_conf 64348999898579999999998799399997888-86246
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGIC 42 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~-~GGtC 42 (481)
..|||+|||||++|++||.+|++.|++|+|+||+. +||-|
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCE
T ss_conf 97629998988789999999996899799996378887724
No 439
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=93.29 E-value=0.093 Score=31.55 Aligned_cols=27 Identities=41% Similarity=0.743 Sum_probs=25.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899989857999999999879939999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIV 33 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~li 33 (481)
|+|||+|-||.+||..+++.|..|..+
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F 27 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLF 27 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 968556534789999998648851254
No 440
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.22 E-value=0.035 Score=34.65 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+|+|.|-.|+++|..|.+.|.+|.++|...
T Consensus 20 vlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 20 VLVAGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8999227889999999997899799998998
No 441
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.18 E-value=0.022 Score=36.05 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=34.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 86434899989857999999999879939999788886
Q gi|254780675|r 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLG 39 (481)
Q Consensus 2 s~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~G 39 (481)
|-+|||+|||||-.|+++|.+|++.|.+|+|+|+..+|
T Consensus 1 ~~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~ 38 (377)
T PRK11259 1 SMRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPP 38 (377)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 95048999995299999999999789959999289988
No 442
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=0.028 Score=35.38 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=9.1
Q ss_pred CCHHHHHCCCCCCCCHHHHHH
Q ss_conf 100122012332210013442
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSV 255 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v 255 (481)
+.+.+.+.|.+++.+..|+++
T Consensus 221 ~~~yi~~~G~~v~~~~pv~~l 241 (485)
T COG3349 221 WTEYIPERGRKVHADYPVKEL 241 (485)
T ss_pred HHHHCCCCCCEEECCCEEEEE
T ss_conf 333130248531036444554
No 443
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=92.92 E-value=0.061 Score=32.87 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=30.1
Q ss_pred CEEEEECCCCE----------EECCCCEEECCCC-CCC----CCCCCCCCC----HHHHHHHHCCCC
Q ss_conf 32664248742----------3025858830444-553----244412320----255554302466
Q gi|254780675|r 305 NGCIIVDGYGR----------TNVPGIYAIGDVA-GAP----MLAHKAEHE----GIICIEKIAGKS 352 (481)
Q Consensus 305 ~g~i~vd~~~q----------Ts~p~IyA~GDv~-g~~----~l~~~A~~q----g~~aa~~i~~~~ 352 (481)
-|+|.+|...| |++||.||+|+|+ ++. .|...|..+ |++|+.++....
T Consensus 384 mGGi~id~~~~vl~~~~~~~~t~I~GLyAaGEva~gGvHGANRLggnsLle~~VfGr~Ag~~a~~~~ 450 (622)
T PTZ00139 384 MGGIPTNWKGEVITQRNNGDDAIVPGLYAAGEAACASVHGANRLGANSLLDIVVFGKSAANTVFELT 450 (622)
T ss_pred CCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6776556775263024788673046842323656577567743677889999998999999999764
No 444
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=92.91 E-value=0.042 Score=34.10 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCC-------CCC-CCCCCCCHHHHHCCCCCC
Q ss_conf 44321565433210002321013331000000001222-------222-212221001220123322
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPV-------EDS-EISQFVQRSLQKRGIKIL 247 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~-------~d~-~~~~~~~~~l~~~Gv~i~ 247 (481)
..++|||+|+.|+-.|..|++.|.+|.++|++-.+... |.+ -+++.....|++.||++.
T Consensus 18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGGmlfn~ivv~~~a~~iLde~gi~y~ 84 (229)
T pfam01946 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGMLFSAMVVRKPADEFLDEFGIRYE 84 (229)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCE
T ss_conf 6889988781799999999878985999964526888620201225633764138999997499527
No 445
>PRK07660 consensus
Probab=92.90 E-value=0.015 Score=37.39 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-|.|||+|.=|-.-|..++..|.+|+|+|..
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~ 35 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLK 35 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999896989999999999669818999798
No 446
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=92.82 E-value=0.094 Score=31.54 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-+|+|||..-|.||=-|+..|..|++.=|.
T Consensus 191 TLvVGasYVALECaGFL~~~g~dV~V~VRS 220 (513)
T TIGR01438 191 TLVVGASYVALECAGFLAALGLDVTVLVRS 220 (513)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 578776142357788986339964999988
No 447
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.80 E-value=0.029 Score=35.23 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|.|||.|.-|+..|..++..|.+|+-+|.+.
T Consensus 3 I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9998978779999999994899489998999
No 448
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.77 E-value=0.2 Score=29.09 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.8
Q ss_pred CCCCC---CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 98643---4899989857999999999879939999788
Q gi|254780675|r 1 MSRLY---DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~y---DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
||..+ .++|+|.|-.|+++|..+.+.|.+|.+.|..
T Consensus 1 ~~~~~~~~~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~ 39 (448)
T PRK03803 1 MSLIASDGLRIVVGLGKSGMSLVRFLARQGYQFAVTDTR 39 (448)
T ss_pred CCEEECCCCEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 963605995899998999999999999788959999189
No 449
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.69 E-value=0.054 Score=33.30 Aligned_cols=36 Identities=31% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9864348999898579999999998799399997888
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|+.+ -|.|||.|.-|+..|..+++.|.+|+-+|.+.
T Consensus 1 m~~k-kI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415)
T PRK11064 1 MSFE-TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCCC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9988-79998868778999999996889489998999
No 450
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.016 Score=37.07 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-|.|||+|.-|-.-|..++..|.+|.++|.+
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999897889999999999579938999799
No 451
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=92.66 E-value=0.24 Score=28.61 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|||.|.-|+..|..+++.|.+|..+|.+
T Consensus 3 I~ViGlGyVGl~~a~~la~~G~~V~g~D~d 32 (185)
T pfam03721 3 IAVIGLGYVGLPTAVCLAEIGHDVVGVDIN 32 (185)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999897874899999999489939999799
No 452
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.65 E-value=0.018 Score=36.76 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=30.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|=++ |.|||+|.=|-.-|..++..|.+|.|+|.+
T Consensus 1 mIkk--V~ViGaG~MG~~IA~~~a~~G~~V~l~D~~ 34 (289)
T PRK09260 1 MMEK--IVVVGAGVMGRGIAYVFASSGFQTTLVDIS 34 (289)
T ss_pred CCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9676--999796887899999999689988999799
No 453
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.64 E-value=0.23 Score=28.68 Aligned_cols=21 Identities=14% Similarity=0.450 Sum_probs=13.4
Q ss_pred CEEEEEEEECCCHHHHHHHHH
Q ss_conf 859999998299889999999
Q gi|254780675|r 421 GEVLGVHMVGPEVTELIQGFS 441 (481)
Q Consensus 421 ~~ilG~~~~g~~A~eli~~~~ 441 (481)
.++-.+-++|..+.++...+.
T Consensus 382 ~~vk~v~l~G~~~~~i~~~l~ 402 (476)
T PRK00141 382 GRIKAALVLGADRAEIVAAVK 402 (476)
T ss_pred HHCEEEEEECCCHHHHHHHHH
T ss_conf 331099997689899999998
No 454
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.62 E-value=0.029 Score=35.21 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCCCHHH-HHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 2210012-201233221001344202234310124403674021102322430574
Q gi|254780675|r 233 QFVQRSL-QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 233 ~~~~~~l-~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
..+.+.+ ++.|++|++++.|++++.. ++....| ++.+|.|++|+|-
T Consensus 149 ~~l~~~~a~~~Gv~~~~~t~V~~i~~~------~V~T~~G---~i~a~~VVvaaG~ 195 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRG---DVHADQVFVCPGA 195 (365)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEEEEE------EEEECCC---EEEEEEEEECCCC
T ss_conf 999999998579289931289962014------8997892---8997669996684
No 455
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.53 E-value=0.079 Score=32.07 Aligned_cols=49 Identities=39% Similarity=0.521 Sum_probs=33.0
Q ss_pred CCEEEEECCCCEEECCCCEEECCCCC-CC----CCCCCCC----CCHHHHHHHHCCCC
Q ss_conf 73266424874230258588304445-53----2444123----20255554302466
Q gi|254780675|r 304 SNGCIIVDGYGRTNVPGIYAIGDVAG-AP----MLAHKAE----HEGIICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~qTs~p~IyA~GDv~g-~~----~l~~~A~----~qg~~aa~~i~~~~ 352 (481)
.-|+|.||++.||++||.||+|||++ +. .|...+. -.|+.|+.++....
T Consensus 347 ~mGGi~vD~~~~T~IpGLyAaGEva~~G~hGAnRLggnsl~e~~VfG~~Ag~~aa~~~ 404 (533)
T PRK07804 347 SCGGVVTDVYGRTEVPGLYAAGEVARTGVHGANRLASNSLLEGLVVGGRAGAAAAAHA 404 (533)
T ss_pred CCCCEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1488667888860877846257755477765234777789999999999999999754
No 456
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.50 E-value=0.25 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEECC
Q ss_conf 4321565433210002321013331000000
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVK 220 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~ 220 (481)
|++|+|+|.+|.=+|..|++.|.+|+++.|.
T Consensus 4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 7999896799999999998589987999567
No 457
>PRK09117 consensus
Probab=92.48 E-value=0.018 Score=36.74 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|||+|.=|-.-|..++..|.+|.++|..
T Consensus 5 VaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 34 (282)
T PRK09117 5 VGIIGAGTMGNGIAQACAVAGLDVVMVDIS 34 (282)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999897799999999999679968999898
No 458
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=92.45 E-value=0.024 Score=35.87 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC
Q ss_conf 344432156543321000232101333100000000122
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP 225 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~ 225 (481)
.|.+++|+|+|..|..-+..+.++|.+|++++.++.-+.
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~ 57 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLE 57 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 677799989878999999999867998999729999999
No 459
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.43 E-value=0.28 Score=28.14 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=31.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434899989857999999999879939999788
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
||-+ +.|||+|.-|...|-+|++.|.+|+++.++
T Consensus 1 m~Mk--I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~ 34 (305)
T PRK05708 1 MSMT--WHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9988--999882399999999998489973999947
No 460
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=0.23 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=11.3
Q ss_pred EEEEEEEECCCHHHHHHHH
Q ss_conf 5999999829988999999
Q gi|254780675|r 422 EVLGVHMVGPEVTELIQGF 440 (481)
Q Consensus 422 ~ilG~~~~g~~A~eli~~~ 440 (481)
++-.+-++|+.+..+...+
T Consensus 392 ~vk~~~l~G~~~~~i~~~~ 410 (481)
T PRK01438 392 RLRGVVLIGADRALIREAL 410 (481)
T ss_pred HCEEEEEECCCHHHHHHHH
T ss_conf 1339999778999999999
No 461
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.33 E-value=0.24 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCC
Q ss_conf 4443215654332100023210133-310000000
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKD 221 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~ 221 (481)
+++++|+|+|.+|+=.+++++.+|. +|.+++..+
T Consensus 121 g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~ 155 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 99899990786899999999984998799991998
No 462
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.32 E-value=0.34 Score=27.44 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=8.4
Q ss_pred CCEEEEECCCCCE
Q ss_conf 9399997888862
Q gi|254780675|r 28 FKVAIVEYAGLGG 40 (481)
Q Consensus 28 ~~V~liEk~~~GG 40 (481)
+|+++|--+.+|-
T Consensus 4 kkI~ViGlGYVGL 16 (415)
T PRK11064 4 ETISVIGLGYIGL 16 (415)
T ss_pred CEEEEECCCHHHH
T ss_conf 8799988687789
No 463
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=92.30 E-value=0.045 Score=33.86 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH-----HCCCCCCCCHHHHHHCCC-CCCCCEEEEECCCCEEEEECCC
Q ss_conf 2101333100000000122222221222100122-----012332210013442022-3431012440367402110232
Q gi|254780675|r 207 YKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ-----KRGIKILTESKISSVKQK-GDMVSVQVERKDGSVSSMQAEK 280 (481)
Q Consensus 207 l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~-----~~Gv~i~~~~~v~~v~~~-~~~~~v~~~~~dG~~~~i~~D~ 280 (481)
+.++|.+|+|.+=+. .-++++.. +.+.|. .--++ .||-..+++... =+-+.|.++.. ...-.|.
T Consensus 124 ~~k~~~~vpl~~L~~----~~~p~i~~-l~~~l~~~v~~~Yt~K-~WGl~~~~~~~~v~~Rvpv~Ls~d----~~YF~dr 193 (390)
T TIGR00031 124 FKKFGAHVPLLELQE----IADPDIQL-LYQFLYRKVYKPYTVK-QWGLPLEEIDPEVIGRVPVVLSED----SSYFPDR 193 (390)
T ss_pred HHHHCCCCCHHHHHH----CCCCCHHH-HHHHHHHHHHCCCCCC-CCCCCHHHCCHHHHCCEEEEEECC----CCCCCCC
T ss_conf 232046155688841----16853788-9999999862477733-367885776801616353895036----8866652
Q ss_pred EEECCCCEEEEE
Q ss_conf 243057422000
Q gi|254780675|r 281 LLLSAGVQGNIE 292 (481)
Q Consensus 281 vl~a~Gr~Pn~~ 292 (481)
++-++-+---|.
T Consensus 194 ~yQg~P~~GYT~ 205 (390)
T TIGR00031 194 IYQGLPKGGYTK 205 (390)
T ss_pred EEECCCCCCHHH
T ss_conf 462236753579
No 464
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.30 E-value=0.25 Score=28.45 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=23.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999998299889999999999877977899638854877899999999987
Q gi|254780675|r 423 VLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDA 474 (481)
Q Consensus 423 ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~~~~hPt~~E~l~~a~~~~ 474 (481)
+-.+-++|+.+..+...+. ..+.+ ++..+++.|+++.|...+
T Consensus 371 vk~v~~~G~~~~~i~~~~~---~~~~~-------~~~~~~l~~Av~~a~~~a 412 (450)
T PRK02472 371 VKAMVVFGETAPKLARAAN---KAGIT-------IVEADNVEDAVPKAYALS 412 (450)
T ss_pred CCEEEEECCCHHHHHHHHH---HCCCE-------EEECCCHHHHHHHHHHHC
T ss_conf 6899996889999999997---37971-------898799999999999858
No 465
>PRK11728 hypothetical protein; Provisional
Probab=92.28 E-value=0.038 Score=34.40 Aligned_cols=36 Identities=31% Similarity=0.654 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECC-CCC
Q ss_conf 43489998985799999999987--9939999788-886
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQL--GFKVAIVEYA-GLG 39 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~--G~~V~liEk~-~~G 39 (481)
.|||+|||||-.|++.|..++++ +.+|+|+||+ .+|
T Consensus 2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g 40 (400)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPA 40 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 530999996799999999999559998399996899975
No 466
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.26 E-value=0.02 Score=36.44 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|||+|.=|-.-|..++..|.+|.|+|.+
T Consensus 5 V~ViGaG~mG~~IA~~~a~~G~~V~l~D~~ 34 (284)
T PRK07819 5 VGVVGAGQMGSGIAEVCARAGVDVLVFETT 34 (284)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999897789999999999579908999798
No 467
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=92.21 E-value=0.049 Score=33.61 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=11.6
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf 77977899638854877899999
Q gi|254780675|r 446 LETTEEELMHTVFPHPTISETMK 468 (481)
Q Consensus 446 ~~~t~~~l~~~~~~hPt~~E~l~ 468 (481)
.+++...+.+..--.+|+.|.++
T Consensus 337 ~~~~~~~i~rFL~~~~~~~d~l~ 359 (374)
T pfam05834 337 YRLPEWLIERFLAGRLSLADLLR 359 (374)
T ss_pred HCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 86998899987089999899999
No 468
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=92.13 E-value=0.054 Score=33.28 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=29.8
Q ss_pred EECCCCEEECCCCCC--CCCCCCCCCCHHHHHHHHCC
Q ss_conf 302585883044455--32444123202555543024
Q gi|254780675|r 316 TNVPGIYAIGDVAGA--PMLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 316 Ts~p~IyA~GDv~g~--~~l~~~A~~qg~~aa~~i~~ 350 (481)
|++.|+|+||||+|. +.+.+=+..|||+||..+..
T Consensus 440 TTVeGLF~~gD~vGa~pHkFSSGSftEGR~AaKaavr 476 (651)
T TIGR02061 440 TTVEGLFAIGDAVGASPHKFSSGSFTEGRLAAKAAVR 476 (651)
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1201465301346888866776641578899999977
No 469
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=92.10 E-value=0.043 Score=33.97 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=31.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 899989857999999999879939999788-8862
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GG 40 (481)
|+|||||-.|++.|.+|++.|++|+|+|++ .+|+
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~ 35 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGG 35 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 97845318789999999974993899965860456
No 470
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.06 E-value=0.044 Score=33.92 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=31.6
Q ss_pred CEEEEE---CC-CCEE-ECCCCEEECCCC------CCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 326642---48-7423-025858830444------55324441232025555430246
Q gi|254780675|r 305 NGCIIV---DG-YGRT-NVPGIYAIGDVA------GAPMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 305 ~g~i~v---d~-~~qT-s~p~IyA~GDv~------g~~~l~~~A~~qg~~aa~~i~~~ 351 (481)
-|++.+ |. +|+. .+|++|-||.+. |++.|. .|...|..|+..+...
T Consensus 350 ~GGV~~~eid~kTmesk~vPGLyf~GEvlDv~g~tGGYN~q-~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 350 AGGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQ-WAWASGWAAGQGAAAW 406 (408)
T ss_pred CCCEEHHHCCHHHHHHHCCCCCEEEEEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 48331111487777764089838877888840577747999-9999999999865663
No 471
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.06 E-value=0.022 Score=36.11 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
-|.|||+|.=|-.-|..++..|.+|+|+|.+
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~ 35 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAFKGFDVTIYDIS 35 (288)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999897889999999999579928999898
No 472
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=92.03 E-value=0.022 Score=36.07 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|||+|.-|..-|..++..|.+|.++|.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~ 31 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDIS 31 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899997889999999999679939999799
No 473
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.86 E-value=0.34 Score=27.43 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCC
Q ss_conf 4443215654332100023210133310000000
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKD 221 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~ 221 (481)
.++++|+|+|.+|+=.+++.+.+|.+|..++..+
T Consensus 167 g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~ 200 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9889998974899999999998599799994999
No 474
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.86 E-value=0.096 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=26.9
Q ss_pred CCEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCC
Q ss_conf 732664248742302585883044455324441232
Q gi|254780675|r 304 SNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEH 339 (481)
Q Consensus 304 ~~g~i~vd~~~qTs~p~IyA~GDv~g~~~l~~~A~~ 339 (481)
.-|+|.||...||++||.||||.|+++. |-|.+
T Consensus 403 ~MGGI~vD~~~~T~I~GLyAaGE~a~gv---HGANR 435 (638)
T PRK07573 403 TMGGLWVDYNLMSTIPGLFVIGEANFSD---HGANR 435 (638)
T ss_pred HCCCCCCCCCCCCCCCCEEEEEECCCCC---CCCCC
T ss_conf 0379668877655258718854347576---54212
No 475
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=91.83 E-value=0.26 Score=28.34 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|+|.|.-|...|..+.+.| +|++||++
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d 29 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKD 29 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECC
T ss_conf 999878889999999998089-99999998
No 476
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=91.80 E-value=0.21 Score=28.93 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 8999898579999999998799-3999978888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGF-KVAIVEYAGL 38 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~-~V~liEk~~~ 38 (481)
|+|||+|-=|-.++.+|+..|. ++.|||.+.+
T Consensus 24 VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V 56 (210)
T TIGR02356 24 VLIIGAGGLGSPAALYLAAAGVGTITIVDDDHV 56 (210)
T ss_pred EEEEEECHHHHHHHHHHHHCCCCEEEEEECCEE
T ss_conf 599972614568999998288837899851677
No 477
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=91.78 E-value=0.16 Score=29.89 Aligned_cols=49 Identities=47% Similarity=0.708 Sum_probs=36.7
Q ss_pred CCEEEEECCCCEEECCCCEEECCCC--CC---CCCCCCCCCCHH----HHHHHHCCCC
Q ss_conf 7326642487423025858830444--55---324441232025----5554302466
Q gi|254780675|r 304 SNGCIIVDGYGRTNVPGIYAIGDVA--GA---PMLAHKAEHEGI----ICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~qTs~p~IyA~GDv~--g~---~~l~~~A~~qg~----~aa~~i~~~~ 352 (481)
.=|+|.||.+.|||.|+.||+|.|+ |. ..|++.+.-|+. .+|++|.+..
T Consensus 340 ~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 340 TMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ECCCEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1066777788865676657732111456654213344658999999999999864135
No 478
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.78 E-value=0.1 Score=31.31 Aligned_cols=47 Identities=32% Similarity=0.360 Sum_probs=33.9
Q ss_pred CEEEEEC-CCCEEECCCCEEECCCCCCC----CCCCCCCC----CHHHHHHHHCCC
Q ss_conf 3266424-87423025858830444553----24441232----025555430246
Q gi|254780675|r 305 NGCIIVD-GYGRTNVPGIYAIGDVAGAP----MLAHKAEH----EGIICIEKIAGK 351 (481)
Q Consensus 305 ~g~i~vd-~~~qTs~p~IyA~GDv~g~~----~l~~~A~~----qg~~aa~~i~~~ 351 (481)
-|+|.|| +..+|++||.||+|+|+++. -|...+.. .|++|+.+++..
T Consensus 391 mGGi~vd~~~~~t~IpGLyAaGEvagGvHGaNRLggNSLle~lVfGr~AG~~Aa~~ 446 (631)
T PRK07803 391 MGGIEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (631)
T ss_pred ECCEEECCCCCCEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36806727888342798433464356767665430357888899899999999999
No 479
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.72 E-value=0.047 Score=33.70 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=16.3
Q ss_pred CCCCEEECCCC-CCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 25858830444-5532444123202555543024664
Q gi|254780675|r 318 VPGIYAIGDVA-GAPMLAHKAEHEGIICIEKIAGKSK 353 (481)
Q Consensus 318 ~p~IyA~GDv~-g~~~l~~~A~~qg~~aa~~i~~~~~ 353 (481)
.||+|.+.-.. .+..+ +-.-|+++|+-|.++.+
T Consensus 336 ~~~~~~a~G~~~~G~~~---~p~~g~~lA~~i~g~~~ 369 (387)
T COG0665 336 LPNLYVATGHGGHGFTL---APALGRLLADLILGGEP 369 (387)
T ss_pred CCCEEEEECCCCCHHHH---HHHHHHHHHHHHCCCCC
T ss_conf 89899997887720667---28999999999749997
No 480
>PRK08948 consensus
Probab=91.46 E-value=0.057 Score=33.12 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=28.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHC---CCCEEEEECC
Q ss_conf 3489998985799999999987---9939999788
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQL---GFKVAIVEYA 36 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~---G~~V~liEk~ 36 (481)
|||+||||||+|+++|+.++++ +.+|+|||+.
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~ 35 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEAT 35 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 94999995899999999998616799849998278
No 481
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=91.45 E-value=0.04 Score=34.22 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCC
Q ss_conf 432156543321000232101333100000000
Q gi|254780675|r 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDR 222 (481)
Q Consensus 190 ~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ 222 (481)
++.|||-|++|+=+|..|+..|.+|+.++....
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~ 34 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQS 34 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 799989787489999999948993999979989
No 482
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.45 E-value=0.43 Score=26.73 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC
Q ss_conf 443215654332100023210133310000000012
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL 224 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll 224 (481)
+++.|||+|..|.-.|..+++.|.+|+++++.+..+
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~l 38 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQL 38 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 769997968878999999996899889997998999
No 483
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.45 E-value=0.078 Score=32.11 Aligned_cols=49 Identities=31% Similarity=0.523 Sum_probs=30.8
Q ss_pred CCEEEEECCCCE------EECCCCEEECCCCCCCC-----C----CCCCCCCHHHHHHHHCCCC
Q ss_conf 732664248742------30258588304445532-----4----4412320255554302466
Q gi|254780675|r 304 SNGCIIVDGYGR------TNVPGIYAIGDVAGAPM-----L----AHKAEHEGIICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~q------Ts~p~IyA~GDv~g~~~-----l----~~~A~~qg~~aa~~i~~~~ 352 (481)
.-|++.+|+.+| +..|++||+|.|+|+.. - .-.+.--||+|++|+++..
T Consensus 486 T~GGl~in~~~qVL~~~g~pIpGLYAaGe~~gg~~g~~y~g~G~sl~~~~~fGriAg~~AA~~~ 549 (552)
T PRK12844 486 TSGGLLTDEYARVLDTDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSMVFGYIAALHAAGAS 549 (552)
T ss_pred CCCCCCCCCCCCEECCCCCEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5878129999716899989849976666465477889866505628889999999999987220
No 484
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.24 E-value=0.11 Score=30.90 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4899989857999999999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
.+.|||.|..|+..|.-+++.|..|+.+|.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 1589888556887899998709848999578
No 485
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=91.23 E-value=0.3 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
++|+|-|.-|--.|.+++.+|.+|.+.|-++
T Consensus 26 vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDP 56 (162)
T pfam00670 26 AVVCGYGDVGKGCAASLKGQGARVIVTEIDP 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 9996787667779998622999899994793
No 486
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.22 E-value=0.061 Score=32.87 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHH-HHHHHHCCCCEEEEECC
Q ss_conf 48999898579999-99999879939999788
Q gi|254780675|r 6 DIILIGSGPAGYVA-AIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 6 DvvIIG~GpAG~~a-A~~~a~~G~~V~liEk~ 36 (481)
-|-+||-|-+|+++ |..|.++|.+|..-|..
T Consensus 10 ~ih~iGigG~GmsalA~~l~~~G~~V~gsD~~ 41 (459)
T PRK00421 10 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK 41 (459)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 89999866888999999999689939998898
No 487
>PRK06996 hypothetical protein; Provisional
Probab=91.21 E-value=0.071 Score=32.42 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEEC-CCCCCCCCCCCCEEE
Q ss_conf 2122210012201233221001344202234310124403674021102322430574220000-232221123573266
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIEN-IGLEKIGVKTSNGCI 308 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~-L~Le~~gi~~~~g~i 308 (481)
++.+.+.+.+++.++.+..+..+..+..+.+++.+++...+| .+++.+++++.|=|..-++.. +++...+-.+++.++
T Consensus 116 ~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~i~a~llVgaDG~~S~vR~~~gi~~~~~~y~q~al 194 (397)
T PRK06996 116 SLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQG-ARTLRARIAVQAEGGLFHDQKAKAGKSARRDYGQTAL 194 (397)
T ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCC-CEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCEEE
T ss_conf 999999999974898798344514577636745899605998-6599818999959998188886389985666762599
Q ss_pred EECCC
Q ss_conf 42487
Q gi|254780675|r 309 IVDGY 313 (481)
Q Consensus 309 ~vd~~ 313 (481)
+.|=.
T Consensus 195 v~~v~ 199 (397)
T PRK06996 195 VGTVT 199 (397)
T ss_pred EEEEE
T ss_conf 98654
No 488
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.16 Score=29.82 Aligned_cols=100 Identities=14% Similarity=0.352 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEE-C-CCCCCC------------CCCCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 34443215654332100023210133310000-0-000122------------222221222100122012332210013
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIE-V-KDRILP------------VEDSEISQFVQRSLQKRGIKILTESKI 252 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~-~-~~~ll~------------~~d~~~~~~~~~~l~~~Gv~i~~~~~v 252 (481)
-|=.++|||||+-|.-.|-.-+|-|.+.-++. | +.++|. ..-+.++..+.++.++..|.+....+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88349998688631678999986121110015651882000003333005654546689999999876468245533434
Q ss_pred HHHCCCC-CCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 4420223-43101244036740211023224305742
Q gi|254780675|r 253 SSVKQKG-DMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 253 ~~v~~~~-~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
+.+++.. .+-..++++.+|. .+.+-.+++++|-+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGa--vLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGA--VLKARTVILATGAR 324 (520)
T ss_pred HCCEECCCCCCCEEEEECCCC--EECCCEEEEECCCC
T ss_conf 202015788860799954783--51131699842764
No 489
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=91.18 E-value=0.047 Score=33.71 Aligned_cols=23 Identities=0% Similarity=-0.120 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99889999999999877977899
Q gi|254780675|r 431 PEVTELIQGFSIAMSLETTEEEL 453 (481)
Q Consensus 431 ~~A~eli~~~~~ai~~~~t~~~l 453 (481)
-...|.+.++...-..|+.+=+.
T Consensus 640 ~t~edsv~la~~l~~~GvD~Idv 662 (770)
T PRK08255 640 NTPDDAVEIARAFKAAGADMIDV 662 (770)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999749989995
No 490
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=0.4 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|.|+|.|-.|+++|..+.+.|.+|.+.|..
T Consensus 12 v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~ 41 (457)
T PRK01390 12 VALFGLGGSGLATARALKAGGAEVIAWDDN 41 (457)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999943699999999999789979999399
No 491
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.12 E-value=0.39 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCC
Q ss_conf 4443215654332100023210133-3100000000
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDR 222 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~ 222 (481)
.++++|+|+|.+|+=.+++++.+|. +|.++++.++
T Consensus 177 g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 212 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 988999673769999999999839918999919889
No 492
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.12 E-value=0.37 Score=27.24 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|+|.|-.|.++|..|.+.|.+|.++|..
T Consensus 6 vlV~GlG~SG~s~a~~L~~~g~~v~~~D~~ 35 (418)
T PRK00683 6 VVVLGLGVTGKSVARFLAQKGVYVIGVDNS 35 (418)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999808887999999999782989998298
No 493
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=91.04 E-value=0.062 Score=32.83 Aligned_cols=32 Identities=38% Similarity=0.641 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCC
Q ss_conf 4899989857999999999879-----9399997888
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG-----FKVAIVEYAG 37 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G-----~~V~liEk~~ 37 (481)
||+|||||++|+++|+.|+..+ +||+|||...
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~ 37 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQP 37 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 9688847388999999984186312473179960521
No 494
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=91.03 E-value=0.13 Score=30.55 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCEEEEECCCCEEECCCCEEECCCCC-CC----CCCCCCCC----CHHHHHHHHCCCC
Q ss_conf 73266424874230258588304445-53----24441232----0255554302466
Q gi|254780675|r 304 SNGCIIVDGYGRTNVPGIYAIGDVAG-AP----MLAHKAEH----EGIICIEKIAGKS 352 (481)
Q Consensus 304 ~~g~i~vd~~~qTs~p~IyA~GDv~g-~~----~l~~~A~~----qg~~aa~~i~~~~ 352 (481)
.-|+|.||++.||++||.||+|+|++ +. .|...+.. -|++|+++++...
T Consensus 357 ~mGGi~vD~~~~t~I~GLyAaGEva~~GvHGANRLggnsl~e~~VfG~~Ag~~Aa~~a 414 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAAERA 414 (582)
T ss_pred EECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7789337889876468738811444166777653223468999999999999999988
No 495
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.00 E-value=0.46 Score=26.49 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=24.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989-857999999999879939999788
Q gi|254780675|r 7 IILIGS-GPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~-GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
++|+|+ ||-|..+|..+++.|.+|+|+-++
T Consensus 31 ~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~ 61 (194)
T cd01078 31 AVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9998588578999999999839979999587
No 496
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.98 E-value=0.49 Score=26.30 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=7.0
Q ss_pred CCEEEEECCCCCE
Q ss_conf 9399997888862
Q gi|254780675|r 28 FKVAIVEYAGLGG 40 (481)
Q Consensus 28 ~~V~liEk~~~GG 40 (481)
.|+++|--+.+|.
T Consensus 1 MkI~ViGlGyVGl 13 (411)
T TIGR03026 1 MKIAVIGLGYVGL 13 (411)
T ss_pred CEEEEECCCHHHH
T ss_conf 9799989787799
No 497
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.96 E-value=0.45 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899989857999999999879939999788
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
|+|+|.|-.|+++|..|.+.|.+|.+.|..
T Consensus 9 v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~ 38 (438)
T PRK03806 9 VVIIGLGLTGLSCVDFFLARGVTPRVMDTR 38 (438)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999945788899999999789969999899
No 498
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=90.95 E-value=0.49 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999898579999999998799399997888
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAG 37 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~~ 37 (481)
|.|||+|.=|.+.|..+++.|.+|.++.++.
T Consensus 3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~ 33 (159)
T pfam01210 3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDE 33 (159)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9999969999999999998799899999043
No 499
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.95 E-value=1.2 Score=23.51 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=28.2
Q ss_pred CCCCCC-----EEEECCCHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf 986434-----899989857-999999999879939999788
Q gi|254780675|r 1 MSRLYD-----IILIGSGPA-GYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 1 Ms~~yD-----vvIIG~GpA-G~~aA~~~a~~G~~V~liEk~ 36 (481)
|+..|| ++|-||+.+ |...|..+++.|.+|++.+++
T Consensus 2 m~~lf~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~ 43 (278)
T PRK08277 2 MNNLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 400638899989995867489999999999879989999798
No 500
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=90.93 E-value=0.067 Score=32.60 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCC
Q ss_conf 2221001220123322100134420223431012440367402110232243057
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAG 286 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~G 286 (481)
.+.+.+.++ .+|+++++|+.+.++..+..+.. .+|. ++.+|.|++++-
T Consensus 218 ~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~--~~g~--~~~~D~VI~t~p 265 (444)
T COG1232 218 IEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVD--VGGE--KITADGVISTAP 265 (444)
T ss_pred HHHHHHHHH---HCEEECCEEEEEEECCCCCEEEE--CCCC--EEECCEEEECCC
T ss_conf 999998743---03351664568887278618997--6870--677356899377
Done!