HHsearch alignment for GI: 254780675 and conserved domain: pfam01593
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=97.06 E-value=5.6e-05 Score=54.98 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf 22210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 232 SQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 232 ~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
T Consensus 207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~--~~G~--~~~ad~VI~a~p~ 258 (444)
T pfam01593 207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTT--VDGE--VIEADAVIVTVPL 258 (444)
T ss_pred HHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEE--CCCC--EEECCEEEECCCH
T ss_conf 99999997415986995897789999699699998--8997--6644868985798