HHsearch alignment for GI: 254780676 and conserved domain: PRK05301

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional.
Probab=98.15  E-value=0.00028  Score=51.87  Aligned_cols=159  Identities=13%  Similarity=0.150  Sum_probs=122.1

Q ss_pred             ECCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             665223535223446---789988882357999999997077518985054---45345325899999999998533586
Q gi|254780676|r   92 LGAICTRACTFCNVA---TGKPQPLDPQEPENISWAVRSMKLSHVVITSVD---RDDLDDGGAQHFAEVISAIRESAPST  165 (329)
Q Consensus        92 lG~~CTR~C~FC~V~---~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~---RDDL~DgGA~hfa~~I~~Ir~~~P~~  165 (329)
T Consensus        23 lT~~CNL~C~hCy~~~~~~~~~~ELs~~e~~~~id~l~~~Gv~~v~~tGGEPllr~D--------~~ei~~~a~~~--G~   92 (375)
T PRK05301         23 LTYRCPLQCPYCSNPLDLARHGAELSTAEWIRVLREARALGVLQLHFSGGEPLLRKD--------LEELVAHARRL--GL   92 (375)
T ss_pred             HHCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--------HHHHHHHHHHC--CC
T ss_conf             314007878466985004876578999999999999998699889961865245668--------99999999976--97


Q ss_pred             EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECH
Q ss_conf             8998154623446899987410702332013830-002756389-70358999999999970891670140488764206
Q gi|254780676|r  166 TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETR  243 (329)
Q Consensus       166 ~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~  243 (329)
T Consensus        93 ~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~---i~~ti~r~N~  169 (375)
T PRK05301         93 YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLT---LNAVIHRHNI  169 (375)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE---EEEEECCCCH
T ss_conf             5899606745579999999850998899956779877877763788629999999999997498169---9987230568


Q ss_pred             HHHHHHHHHHHHCCCCEEEC
Q ss_conf             88999999999669939975
Q gi|254780676|r  244 NEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       244 eEi~e~l~DLr~~gvdilTi  263 (329)
T Consensus       170 ~~l~~i~~la~~lGv~~~~l  189 (375)
T PRK05301        170 DQIPRIIELAVELGADRLEL  189 (375)
T ss_pred             HHHHHHHHHHHHCCCCEEEE
T ss_conf             88999999999729982898