HHsearch alignment for GI: 254780676 and conserved domain: PRK06245
>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=99.23 E-value=3.5e-10 Score=93.51 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=133.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 99866522353522344678998--8882357999999997077518985054453453258-----9999999999853
Q gi|254780676|r 89 FMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRES 161 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~ 161 (329)
T Consensus 15 ~In~TNiC~~~C~fCaF~~~~~~a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRPDPGEASLLSPEEVREILERGQDAGCTEALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDL 94 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 61677540268825867468875687799999999999997698399980578866368999999970755077889998
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHH--CCCHHHHHCCCC-CCCCCCCC---CCCCHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 358689981546234---4689998741--070233201383-00027563---89703589999999999708916701
Q gi|254780676|r 162 APSTTIEVLTPDFLR---KPHALEKVVS--AKPDVFNHNLET-VASNYLMV---RPGARYFHSLRLLQRVKELDPLIFTK 232 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G---~~~al~~v~~--A~pdV~nHNiET-V~rLy~~V---Rp~a~Y~rSL~vL~~aK~~~~~i~TK 232 (329)
T Consensus 95 ~~~~le~gllph~n~G~ls~~el~~Lk~v~asmG~---mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~Ah~lg--IptT 169 (336)
T PRK06245 95 CELALETGLLPHTNAGILSRAEMEALKPVNASMGL---MLEQTSPRLLETVHRHSPGKDPELRLETIEWAGELK--IPFT 169 (336)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC--CCCE
T ss_conf 58887636552236676789999987535976675---712356898876304489878899999999999839--9722
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCC---E-EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-CCCEEECCC
Q ss_conf 404887642068899999999966993---9-9750222786100780002384699999999997---4-962434048
Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVD---F-LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS---K-GFLMVSASP 304 (329)
Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvd---i-lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~---~-Gf~~V~SgP 304 (329)
T Consensus 170 atmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~-t~m~~~~~~~~~e~l~~iAvARiiL~~~i~IQapp 248 (336)
T PRK06245 170 TGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPG-IPMENHPEPSPEEMPRVVALARLILPPDISIQVPP 248 (336)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 02452066999999999999999886349757995068778987-53346999799999999999999669985797698