HHsearch alignment for GI: 254780676 and conserved domain: TIGR00089

>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=98.24  E-value=0.00012  Score=54.36  Aligned_cols=209  Identities=14%  Similarity=0.228  Sum_probs=143.3

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CC-CHHHH-HHHHHHHH
Q ss_conf             72699986652235352234467899--888823579999999970775189850544534--53-25899-99999999
Q gi|254780676|r   85 NHATFMILGAICTRACTFCNVATGKP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDL--DD-GGAQH-FAEVISAI  158 (329)
Q Consensus        85 gtATFMilG~~CTR~C~FC~V~~G~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--~D-gGA~h-fa~~I~~I  158 (329)
T Consensus       152 ~~~a~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~LL~~l  231 (455)
T TIGR00089       152 KTRAFVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADLLREL  231 (455)
T ss_pred             CEEEEEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             53899984026586977688134266001358899999999998469809999988525624778888976479999998


Q ss_pred             HHHCCC-CEEEEECCCCCCCHHHHHHHHHCC--CHHHHHCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             853358-689981546234468999874107--0233201383----000275638970358999999999970891670
Q gi|254780676|r  159 RESAPS-TTIEVLTPDFLRKPHALEKVVSAK--PDVFNHNLET----VASNYLMVRPGARYFHSLRLLQRVKELDPLIFT  231 (329)
Q Consensus       159 r~~~P~-~~IEvLiPDf~G~~~al~~v~~A~--pdV~nHNiET----V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T  231 (329)
T Consensus       232 ~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P~~~i  311 (455)
T TIGR00089       232 SKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVPDAAI  311 (455)
T ss_pred             HHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             40059702688604670326878999998507885352022126618869997037898889999999999984788177


Q ss_pred             CCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC-CCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf             14048876-42068899999999966993997502227-86-100---78000238469999999999
Q gi|254780676|r  232 KSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT-RKH---HKVESFVTPQDFKSYETIAY  293 (329)
Q Consensus       232 KSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps-~~h---~pV~ryv~P~eF~~~~~~a~  293 (329)
T Consensus       312 ~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~  379 (455)
T TIGR00089       312 TTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQK  379 (455)
T ss_pred             ECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             50268828999889999999998523844343120578888746356788898899999999999999