HHsearch alignment for GI: 254780676 and conserved domain: TIGR00089
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=98.24 E-value=0.00012 Score=54.36 Aligned_cols=209 Identities=14% Similarity=0.228 Sum_probs=143.3
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CC-CHHHH-HHHHHHHH
Q ss_conf 72699986652235352234467899--888823579999999970775189850544534--53-25899-99999999
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATGKP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDL--DD-GGAQH-FAEVISAI 158 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--~D-gGA~h-fa~~I~~I 158 (329)
T Consensus 152 ~~~a~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~LL~~l 231 (455)
T TIGR00089 152 KTRAFVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADLLREL 231 (455)
T ss_pred CEEEEEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 53899984026586977688134266001358899999999998469809999988525624778888976479999998
Q ss_pred HHHCCC-CEEEEECCCCCCCHHHHHHHHHCC--CHHHHHCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 853358-689981546234468999874107--0233201383----000275638970358999999999970891670
Q gi|254780676|r 159 RESAPS-TTIEVLTPDFLRKPHALEKVVSAK--PDVFNHNLET----VASNYLMVRPGARYFHSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 159 r~~~P~-~~IEvLiPDf~G~~~al~~v~~A~--pdV~nHNiET----V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T 231 (329)
T Consensus 232 ~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P~~~i 311 (455)
T TIGR00089 232 SKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVPDAAI 311 (455)
T ss_pred HHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 40059702688604670326878999998507885352022126618869997037898889999999999984788177
Q ss_pred CCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC-CCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf 14048876-42068899999999966993997502227-86-100---78000238469999999999
Q gi|254780676|r 232 KSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT-RKH---HKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 232 KSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps-~~h---~pV~ryv~P~eF~~~~~~a~ 293 (329)
T Consensus 312 ~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~ 379 (455)
T TIGR00089 312 TTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQK 379 (455)
T ss_pred ECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 50268828999889999999998523844343120578888746356788898899999999999999