HHsearch alignment for GI: 254780676 and conserved domain: TIGR01574
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=90.13 E-value=2 Score=24.62 Aligned_cols=189 Identities=16% Similarity=0.249 Sum_probs=119.2
Q ss_pred HHHHHCCC-CEEEEEECCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCEEEEEC--CC----CCCCCCCHH
Q ss_conf 76750897-269998665223535223446789988--8823579999999970775189850--54----453453258
Q gi|254780676|r 78 IGECWNKN-HATFMILGAICTRACTFCNVATGKPQP--LDPQEPENISWAVRSMKLSHVVITS--VD----RDDLDDGGA 148 (329)
Q Consensus 78 i~ECw~~g-tATFMilG~~CTR~C~FC~V~~G~P~~--~D~~EP~rvA~av~~l~Lk~vViTS--V~----RDDL~DgGA 148 (329)
T Consensus 146 la~~r~Eg~~~sfv~Im~GCdkfCtYCiVPYtRG~E~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~ 225 (456)
T TIGR01574 146 LAEVRNEGKFKSFVNIMEGCDKFCTYCIVPYTRGEEISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKT 225 (456)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 77512476422524031476885454661530482012574469999999986586487403653011158752258867
Q ss_pred HHHHHHHHHHHHHCCCCEEEE-----ECCCCCCCHHHHHHHHHCCCHHHHHCCC----CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999985335868998-----1546234468999874107023320138----3000275638970358999999
Q gi|254780676|r 149 QHFAEVISAIRESAPSTTIEV-----LTPDFLRKPHALEKVVSAKPDVFNHNLE----TVASNYLMVRPGARYFHSLRLL 219 (329)
Q Consensus 149 ~hfa~~I~~Ir~~~P~~~IEv-----LiPDf~G~~~al~~v~~A~pdV~nHNiE----TV~rLy~~VRp~a~Y~rSL~vL 219 (329)
T Consensus 226 ~~f~dLL~~l~rrCe-~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v 304 (456)
T TIGR01574 226 VDFADLLRELARRCE-VKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELV 304 (456)
T ss_pred ECHHHHHHHHHHHCC-HHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHH
T ss_conf 366999999987510-2215851131378787654468788737894666643752007079985107755689999999
Q ss_pred HHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 99997089167014048876-4206889999999996699399750222
Q gi|254780676|r 220 QRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 220 ~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
T Consensus 305 ~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys 353 (456)
T TIGR01574 305 RKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYS 353 (456)
T ss_pred HHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9998737871212453673687784668999999852262412334413