HHsearch alignment for GI: 254780676 and conserved domain: TIGR01578
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=97.47 E-value=0.0032 Score=44.39 Aligned_cols=180 Identities=19% Similarity=0.316 Sum_probs=109.0
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEECCCCCCC-CCCHHHHHHHHHH-HHHH
Q ss_conf 2699986652235352234467899888823579999999970---775189850544534-5325899999999-9985
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM---KLSHVVITSVDRDDL-DDGGAQHFAEVIS-AIRE 160 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l---~Lk~vViTSV~RDDL-~DgGA~hfa~~I~-~Ir~ 160 (329)
T Consensus 144 ~i~i~pI~~GC~~~CsYCi~K~ARG-~L~S~PpEkiV~~ar~l~~~G~kEI~iTs~DT~~YG~DiG~~kLPeLL~~~~t~ 222 (487)
T TIGR01578 144 LIEILPINQGCLGNCSYCITKIARG-KLASYPPEKIVEKARELVAEGAKEIWITSQDTAAYGKDIGERKLPELLRRLITE 222 (487)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7555543666356887546777644-524887225689999999705312651344666344223762127999999862
Q ss_pred HCCCCEEEE--ECCC-CCCCHHHHHHHHHCCCHHHH--HCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 335868998--1546-23446899987410702332--0138300027------56389703589999999999708916
Q gi|254780676|r 161 SAPSTTIEV--LTPD-FLRKPHALEKVVSAKPDVFN--HNLETVASNY------LMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 161 ~~P~~~IEv--LiPD-f~G~~~al~~v~~A~pdV~n--HNiETV~rLy------~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
T Consensus 223 I~g~F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLH----lPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~ 298 (487)
T TIGR01578 223 IPGDFRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLH----LPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDL 298 (487)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 599327876258876334788999999854882000115----4201587588974485652577899999998762686
Q ss_pred EECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC
Q ss_conf 7014048876-42068899999999966993997502227-86
Q gi|254780676|r 230 FTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT 270 (329)
Q Consensus 230 ~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps 270 (329)
T Consensus 299 tl~TDiIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~Rpg 341 (487)
T TIGR01578 299 TLSTDIIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPG 341 (487)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 4730016717898835589999999982898345302468888