HHsearch alignment for GI: 254780676 and conserved domain: TIGR01578

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=97.47  E-value=0.0032  Score=44.39  Aligned_cols=180  Identities=19%  Similarity=0.316  Sum_probs=109.0

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEECCCCCCC-CCCHHHHHHHHHH-HHHH
Q ss_conf             2699986652235352234467899888823579999999970---775189850544534-5325899999999-9985
Q gi|254780676|r   86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM---KLSHVVITSVDRDDL-DDGGAQHFAEVIS-AIRE  160 (329)
Q Consensus        86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l---~Lk~vViTSV~RDDL-~DgGA~hfa~~I~-~Ir~  160 (329)
T Consensus       144 ~i~i~pI~~GC~~~CsYCi~K~ARG-~L~S~PpEkiV~~ar~l~~~G~kEI~iTs~DT~~YG~DiG~~kLPeLL~~~~t~  222 (487)
T TIGR01578       144 LIEILPINQGCLGNCSYCITKIARG-KLASYPPEKIVEKARELVAEGAKEIWITSQDTAAYGKDIGERKLPELLRRLITE  222 (487)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             7555543666356887546777644-524887225689999999705312651344666344223762127999999862


Q ss_pred             HCCCCEEEE--ECCC-CCCCHHHHHHHHHCCCHHHH--HCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             335868998--1546-23446899987410702332--0138300027------56389703589999999999708916
Q gi|254780676|r  161 SAPSTTIEV--LTPD-FLRKPHALEKVVSAKPDVFN--HNLETVASNY------LMVRPGARYFHSLRLLQRVKELDPLI  229 (329)
Q Consensus       161 ~~P~~~IEv--LiPD-f~G~~~al~~v~~A~pdV~n--HNiETV~rLy------~~VRp~a~Y~rSL~vL~~aK~~~~~i  229 (329)
T Consensus       223 I~g~F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLH----lPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~  298 (487)
T TIGR01578       223 IPGDFRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLH----LPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDL  298 (487)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             599327876258876334788999999854882000115----4201587588974485652577899999998762686


Q ss_pred             EECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC
Q ss_conf             7014048876-42068899999999966993997502227-86
Q gi|254780676|r  230 FTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT  270 (329)
Q Consensus       230 ~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps  270 (329)
T Consensus       299 tl~TDiIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~Rpg  341 (487)
T TIGR01578       299 TLSTDIIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPG  341 (487)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             4730016717898835589999999982898345302468888