HHsearch alignment for GI: 254780676 and conserved domain: TIGR03551
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.51 E-value=1.7e-12 Score=109.80 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=164.4
Q ss_pred CCCEEECCCCCCCHHHHHCCCCEEEEE-----ECCCCCCCCCCCCCCCC--CCC--CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 982365257887876750897269998-----66522353522344678--998--888235799999999707751898
Q gi|254780676|r 65 NLTTVCEEAGCPNIGECWNKNHATFMI-----LGAICTRACTFCNVATG--KPQ--PLDPQEPENISWAVRSMKLSHVVI 135 (329)
Q Consensus 65 ~L~TVCeeA~CPNi~ECw~~gtATFMi-----lG~~CTR~C~FC~V~~G--~P~--~~D~~EP~rvA~av~~l~Lk~vVi 135 (329)
T Consensus 15 dl~~L~~~A~~vR-~~~~-G~~Vtf~~n~~In~TNiC~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~G~~Ei~~ 92 (343)
T TIGR03551 15 NLFELFRLADELR-RDIV-GDTVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCI 92 (343)
T ss_pred CHHHHHHHHHHHH-HHHC-CCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999-9877-9948996500625526874789767786689998660079999999999999769968998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------CC--CHHHHHHHHHCCCHHHHHC-CCC-CCCCCC
Q ss_conf 505445345325899999999998533586899815462-------34--4689998741070233201-383-000275
Q gi|254780676|r 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF-------LR--KPHALEKVVSAKPDVFNHN-LET-VASNYL 204 (329)
Q Consensus 136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf-------~G--~~~al~~v~~A~pdV~nHN-iET-V~rLy~ 204 (329)
T Consensus 93 ~gG~---~Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~ 169 (343)
T TIGR03551 93 QGGI---HPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRK 169 (343)
T ss_pred ECCC---CCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHH
T ss_conf 2586---8788888999999999874883010227899999999865999999999999758776788651321401241
Q ss_pred CCCCC-CHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEE----ECCHHCCCCCCCC----C
Q ss_conf 63897-0358999999999970891670140488764206889999999996699399----7502227861007----8
Q gi|254780676|r 205 MVRPG-ARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFL----TMGQYLQPTRKHH----K 275 (329)
Q Consensus 205 ~VRp~-a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdil----TiGQYL~Ps~~h~----p 275 (329)
T Consensus 170 ~i~P~K~~~~~wl~~~~~Ah~lG--i~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~ 247 (343)
T TIGR03551 170 VICPDKLSTAEWIEIIKTAHKLG--IPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGM 247 (343)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCC
T ss_conf 46969899999999999999859--9720223427889999999999999986201388269981365667880444156
Q ss_pred CCCCCCHHHHHHHHHHHHHC----CC-CEEEC
Q ss_conf 00023846999999999974----96-24340
Q gi|254780676|r 276 VESFVTPQDFKSYETIAYSK----GF-LMVSA 302 (329)
Q Consensus 276 V~ryv~P~eF~~~~~~a~~~----Gf-~~V~S 302 (329)
T Consensus 248 ~~~--~~~~~e~l~~iAvaRl~l~~~i~~Iqa 277 (343)
T TIGR03551 248 ARP--GPTGREDLKVHAIARILLHGLIDNIQA 277 (343)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 678--985799999999999970477654222