Query gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 329
No_of_seqs 137 out of 1373
Neff 3.9
Searched_HMMs 39220
Date Sun May 29 20:25:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780676.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12928 lipoyl synthase; Prov 100.0 0 0 1011.9 26.4 287 29-315 3-290 (290)
2 COG0320 LipA Lipoate synthase 100.0 0 0 1010.4 26.7 302 20-321 4-305 (306)
3 PRK05481 lipoyl synthase; Prov 100.0 0 0 1000.4 27.4 283 36-318 2-285 (289)
4 KOG2672 consensus 100.0 0 0 829.9 21.5 320 8-327 23-354 (360)
5 TIGR00510 lipA lipoic acid syn 100.0 0 0 645.7 16.2 288 35-322 12-308 (310)
6 PRK08508 biotin synthase; Prov 99.9 2.1E-25 5.4E-30 201.0 18.3 203 93-309 14-225 (279)
7 PRK07094 biotin synthase; Prov 99.9 3.3E-23 8.5E-28 185.4 17.7 192 93-294 46-243 (323)
8 PRK06256 biotin synthase; Vali 99.9 3.1E-23 7.9E-28 185.6 17.4 192 92-294 62-263 (325)
9 COG0502 BioB Biotin synthase a 99.9 4.4E-23 1.1E-27 184.6 15.4 208 88-309 52-269 (335)
10 TIGR00433 bioB biotin synthase 99.9 3E-22 7.8E-27 178.7 9.2 211 94-315 40-303 (350)
11 PRK06267 hypothetical protein; 99.8 5E-18 1.3E-22 148.9 18.1 189 89-292 30-228 (324)
12 smart00729 Elp3 Elongator prot 99.5 1.6E-12 4.1E-17 110.0 16.5 189 88-278 3-203 (216)
13 TIGR03551 F420_cofH 7,8-dideme 99.5 1.7E-12 4.4E-17 109.8 15.8 229 65-302 15-277 (343)
14 KOG2900 consensus 99.5 3E-14 7.7E-19 122.2 6.7 175 87-267 84-268 (380)
15 PRK07360 FO synthase subunit 2 99.5 4E-12 1E-16 107.2 15.3 233 66-302 37-303 (375)
16 PRK08444 hypothetical protein; 99.4 2.2E-11 5.6E-16 102.0 16.1 221 64-295 24-271 (353)
17 cd01335 Radical_SAM Radical SA 99.3 6.4E-11 1.6E-15 98.7 12.8 170 92-268 3-180 (204)
18 COG1060 ThiH Thiamine biosynth 99.3 5E-10 1.3E-14 92.4 14.9 201 88-295 61-283 (370)
19 PRK06245 cofG FO synthase subu 99.2 3.5E-10 8.9E-15 93.5 12.6 210 89-304 15-248 (336)
20 TIGR03550 F420_cofG 7,8-dideme 99.2 9.2E-10 2.4E-14 90.5 12.2 204 90-304 8-245 (322)
21 PRK08445 hypothetical protein; 99.1 4.8E-09 1.2E-13 85.5 13.2 229 59-295 11-268 (348)
22 PRK05927 hypothetical protein; 99.1 2.6E-09 6.7E-14 87.3 11.5 237 58-302 13-280 (350)
23 PRK09240 thiH thiamine biosynt 98.9 3.8E-08 9.8E-13 79.1 11.2 210 87-303 75-319 (371)
24 COG0621 MiaB 2-methylthioadeni 98.9 6E-07 1.5E-11 70.7 16.7 244 50-295 100-368 (437)
25 pfam04055 Radical_SAM Radical 98.8 1.5E-07 3.9E-12 74.8 11.2 156 92-253 3-165 (165)
26 PRK09234 fbiC FO synthase; Rev 98.7 2.2E-07 5.7E-12 73.7 11.4 224 65-295 506-756 (846)
27 PRK05926 hypothetical protein; 98.7 2.8E-07 7.1E-12 73.0 11.3 258 35-302 7-305 (371)
28 TIGR03471 HpnJ hopanoid biosyn 98.7 3.8E-06 9.6E-11 65.0 15.8 229 86-325 196-472 (472)
29 TIGR00423 TIGR00423 conserved 98.5 3E-06 7.6E-11 65.7 11.1 196 93-294 12-245 (331)
30 COG1032 Fe-S oxidoreductase [E 98.4 1.3E-05 3.3E-10 61.3 11.6 171 87-263 199-390 (490)
31 PRK09613 thiH thiamine biosynt 98.3 1.9E-05 4.8E-10 60.1 10.7 217 81-304 77-340 (471)
32 TIGR00089 TIGR00089 RNA modifi 98.2 0.00012 3.1E-09 54.4 14.6 209 85-293 152-379 (455)
33 PRK09234 fbiC FO synthase; Rev 98.2 1.6E-05 4.1E-10 60.6 8.9 203 88-294 77-304 (846)
34 PRK05301 pyrroloquinoline quin 98.1 0.00028 7E-09 51.9 14.8 159 92-263 23-189 (375)
35 PRK05628 coproporphyrinogen II 98.1 0.00045 1.2E-08 50.3 15.0 211 94-312 10-253 (376)
36 COG0535 Predicted Fe-S oxidore 98.1 0.0012 3.1E-08 47.3 16.9 192 92-292 25-221 (347)
37 PRK08207 coproporphyrinogen II 97.9 0.00084 2.1E-08 48.4 13.9 246 49-300 126-409 (497)
38 PRK06582 coproporphyrinogen II 97.9 0.00038 9.8E-09 50.9 12.0 210 94-312 19-255 (390)
39 COG1242 Predicted Fe-S oxidore 97.9 0.00019 4.8E-09 53.1 10.2 59 204-264 159-218 (312)
40 PRK00164 moaA molybdenum cofac 97.9 0.0003 7.6E-09 51.6 11.0 186 92-288 23-220 (334)
41 PRK05799 coproporphyrinogen II 97.9 0.0014 3.6E-08 46.9 14.3 212 91-312 8-244 (374)
42 TIGR03470 HpnH hopanoid biosyn 97.9 0.0014 3.5E-08 47.0 14.1 194 93-301 35-238 (318)
43 PRK13361 molybdenum cofactor b 97.8 0.00094 2.4E-08 48.1 12.6 183 92-287 20-213 (329)
44 PRK05660 coproporphyrinogen II 97.8 0.0015 3.9E-08 46.6 13.2 208 94-313 14-249 (378)
45 PRK09058 coproporphyrinogen II 97.8 0.0022 5.7E-08 45.4 13.7 221 84-310 54-302 (447)
46 PRK08208 coproporphyrinogen II 97.7 0.0031 7.8E-08 44.5 14.0 213 87-308 46-282 (436)
47 PRK13347 coproporphyrinogen II 97.7 0.0048 1.2E-07 43.1 14.8 213 86-309 50-293 (453)
48 PRK06294 coproporphyrinogen II 97.7 0.003 7.6E-08 44.6 13.3 207 93-310 13-246 (374)
49 PRK07379 coproporphyrinogen II 97.7 0.0039 1E-07 43.7 13.8 211 94-312 18-260 (399)
50 PRK09249 coproporphyrinogen II 97.6 0.012 3E-07 40.4 15.2 214 87-309 52-294 (456)
51 PRK05904 coproporphyrinogen II 97.6 0.012 3E-07 40.4 16.9 217 82-308 2-239 (353)
52 PRK08599 coproporphyrinogen II 97.5 0.0057 1.5E-07 42.6 13.1 206 94-311 9-244 (377)
53 PRK08898 coproporphyrinogen II 97.5 0.0037 9.3E-08 43.9 11.7 210 94-311 27-260 (393)
54 TIGR01579 MiaB-like-C MiaB-lik 97.5 0.013 3.3E-07 40.1 14.4 212 78-295 202-438 (492)
55 PRK08446 coproporphyrinogen II 97.5 0.0076 1.9E-07 41.7 13.2 204 94-307 8-232 (351)
56 PRK08807 consensus 97.5 0.0064 1.6E-07 42.2 12.8 210 93-312 15-251 (385)
57 PRK08949 consensus 97.5 0.0057 1.5E-07 42.5 12.5 209 93-312 13-248 (378)
58 TIGR01578 MiaB-like-B MiaB-lik 97.5 0.0032 8E-08 44.4 11.0 180 86-270 144-341 (487)
59 PRK09057 coproporphyrinogen II 97.5 0.0024 6E-08 45.3 10.2 210 93-312 11-249 (381)
60 COG1533 SplB DNA repair photol 97.3 0.019 4.9E-07 38.9 13.2 195 93-293 36-247 (297)
61 TIGR01125 TIGR01125 MiaB-like 97.2 0.031 7.8E-07 37.4 13.9 176 89-269 167-366 (475)
62 TIGR02351 thiH thiazole biosyn 96.9 0.0097 2.5E-07 40.9 9.0 168 80-254 67-245 (378)
63 COG2108 Uncharacterized conser 96.9 0.035 9E-07 37.0 11.8 169 81-266 24-201 (353)
64 COG0635 HemN Coproporphyrinoge 96.9 0.057 1.5E-06 35.5 14.9 214 87-307 35-276 (416)
65 COG2516 Biotin synthase-relate 96.5 0.026 6.6E-07 37.9 8.6 201 86-292 29-255 (339)
66 COG2100 Predicted Fe-S oxidore 96.5 0.11 2.9E-06 33.4 15.8 217 72-298 88-331 (414)
67 TIGR02666 moaA molybdenum cofa 96.4 0.12 3.2E-06 33.1 11.8 182 92-284 16-215 (346)
68 COG1313 PflX Uncharacterized F 96.4 0.1 2.7E-06 33.7 11.0 224 53-301 61-333 (335)
69 TIGR01212 TIGR01212 radical SA 96.0 0.02 5.2E-07 38.7 5.8 158 71-263 24-214 (307)
70 TIGR02668 moaA_archaeal probab 96.0 0.2 5.2E-06 31.6 11.6 176 92-282 16-214 (324)
71 pfam00682 HMGL-like HMGL-like. 95.9 0.17 4.5E-06 32.1 10.1 161 110-292 8-175 (237)
72 COG2896 MoaA Molybdenum cofact 95.9 0.23 5.8E-06 31.3 13.1 179 92-285 17-208 (322)
73 PRK08629 coproporphyrinogen II 95.8 0.23 5.9E-06 31.2 13.8 207 86-303 43-267 (424)
74 COG0731 Fe-S oxidoreductases [ 95.6 0.28 7E-06 30.7 15.4 207 94-312 32-261 (296)
75 COG1180 PflA Pyruvate-formate 95.3 0.35 8.8E-06 30.0 14.9 205 87-303 36-248 (260)
76 KOG4355 consensus 94.7 0.12 3.1E-06 33.2 6.3 165 91-270 192-382 (547)
77 PRK05692 hydroxymethylglutaryl 94.1 0.68 1.7E-05 27.9 11.4 146 109-264 19-175 (287)
78 PRK05588 histidinol-phosphatas 93.8 0.76 1.9E-05 27.6 13.2 107 182-300 132-245 (256)
79 PRK08195 4-hydroxy-2-ketovaler 93.7 0.8 2E-05 27.4 11.7 37 225-263 213-255 (337)
80 KOG1939 consensus 93.2 0.14 3.5E-06 32.8 4.1 123 175-310 98-228 (1247)
81 PRK11145 pflA pyruvate formate 93.0 1 2.6E-05 26.7 14.9 204 85-301 22-246 (246)
82 KOG2492 consensus 92.9 1.1 2.7E-05 26.6 10.5 213 84-306 219-482 (552)
83 TIGR03217 4OH_2_O_val_ald 4-hy 92.6 1.1 2.9E-05 26.3 11.9 35 225-261 212-252 (333)
84 COG0119 LeuA Isopropylmalate/h 92.6 1.2 3E-05 26.3 11.0 159 110-290 18-182 (409)
85 COG1856 Uncharacterized homolo 91.9 1.4 3.5E-05 25.7 14.1 203 85-299 10-220 (275)
86 TIGR02026 BchE magnesium-proto 91.7 1.4 3.7E-05 25.6 9.3 192 87-295 198-395 (506)
87 TIGR01574 miaB-methiolase tRNA 90.1 2 5.1E-05 24.6 10.9 189 78-267 146-353 (456)
88 TIGR01290 nifB nitrogenase cof 89.3 0.61 1.6E-05 28.2 4.2 193 93-291 31-254 (461)
89 PRK08091 ribulose-phosphate 3- 89.1 2 5.2E-05 24.6 6.7 37 116-160 78-114 (235)
90 PRK07896 nicotinate-nucleotide 88.7 2.5 6.4E-05 23.9 9.6 111 126-267 164-276 (288)
91 COG1243 ELP3 Histone acetyltra 88.6 2.5 6.5E-05 23.9 9.7 216 57-294 50-323 (515)
92 PRK06096 molybdenum transport 87.1 3.1 7.9E-05 23.3 8.7 179 54-265 49-265 (284)
93 PRK11858 aksA trans-homoaconit 86.8 3.2 8.2E-05 23.1 11.6 27 225-253 212-243 (378)
94 TIGR01108 oadA oxaloacetate de 86.5 3.2 8.2E-05 23.1 6.4 95 155-263 61-169 (616)
95 PRK07328 histidinol-phosphatas 85.7 3.7 9.3E-05 22.7 14.5 99 189-301 154-255 (268)
96 cd02801 DUS_like_FMN Dihydrour 83.9 4.4 0.00011 22.2 7.7 54 244-304 138-191 (231)
97 cd02810 DHOD_DHPD_FMN Dihydroo 83.2 4.6 0.00012 22.0 9.8 173 136-316 70-262 (289)
98 pfam05853 DUF849 Prokaryotic p 82.6 4.9 0.00012 21.9 11.5 138 109-258 18-165 (274)
99 PRK08508 biotin synthase; Prov 81.8 1.4 3.5E-05 25.8 2.9 181 100-302 58-277 (279)
100 cd02072 Glm_B12_BD B12 binding 80.9 5.6 0.00014 21.5 7.0 91 183-302 22-114 (128)
101 PRK12595 bifunctional 3-deoxy- 80.4 5.8 0.00015 21.3 7.6 155 116-300 132-319 (360)
102 PRK10128 putative aldolase; Pr 80.3 5.8 0.00015 21.3 11.0 150 120-290 13-184 (250)
103 PRK09016 quinolinate phosphori 79.8 3.2 8.2E-05 23.2 4.2 107 126-268 174-284 (296)
104 cd00950 DHDPS Dihydrodipicolin 79.0 6.4 0.00016 21.0 7.8 75 113-192 79-157 (284)
105 COG1625 Fe-S oxidoreductase, r 78.9 6.4 0.00016 21.0 10.2 114 177-294 124-243 (414)
106 PRK00915 2-isopropylmalate syn 78.1 6.8 0.00017 20.9 10.9 25 225-251 220-249 (511)
107 PRK12331 oxaloacetate decarbox 77.8 6.9 0.00018 20.8 9.3 46 150-196 184-230 (463)
108 COG1244 Predicted Fe-S oxidore 77.7 6.9 0.00018 20.8 8.8 164 96-264 61-243 (358)
109 PRK09248 putative hydrolase; V 77.2 7.2 0.00018 20.7 10.5 180 117-324 20-236 (246)
110 PRK08005 ribulose-phosphate 3- 76.4 3.9 9.9E-05 22.6 3.8 21 179-199 72-92 (210)
111 TIGR02855 spore_yabG sporulati 76.2 5.6 0.00014 21.5 4.6 82 114-198 147-245 (292)
112 pfam02601 Exonuc_VII_L Exonucl 75.3 8 0.0002 20.4 7.1 65 110-181 88-152 (295)
113 KOG2550 consensus 74.5 7 0.00018 20.7 4.7 58 127-193 261-318 (503)
114 TIGR00169 leuB 3-isopropylmala 74.1 3.8 9.7E-05 22.6 3.3 70 112-186 164-237 (370)
115 PRK05756 pyridoxamine kinase; 73.9 6.5 0.00016 21.0 4.4 32 114-145 160-191 (287)
116 PRK06543 nicotinate-nucleotide 73.3 6.3 0.00016 21.1 4.2 110 126-266 154-267 (281)
117 TIGR02495 NrdG2 anaerobic ribo 72.8 9.1 0.00023 19.9 9.1 163 85-258 15-208 (220)
118 PRK05294 carB carbamoyl phosph 72.8 9.2 0.00023 19.9 5.2 115 180-311 579-713 (1063)
119 PRK07565 dihydroorotate dehydr 71.7 9.7 0.00025 19.8 10.5 184 113-316 111-316 (333)
120 cd04739 DHOD_like Dihydroorota 70.5 10 0.00026 19.6 10.9 169 114-302 110-298 (325)
121 TIGR01285 nifN nitrogenase mol 70.3 8 0.0002 20.3 4.2 27 151-177 110-141 (451)
122 PRK12581 oxaloacetate decarbox 69.8 11 0.00027 19.5 9.8 43 151-194 194-237 (468)
123 PRK06559 nicotinate-nucleotide 69.3 11 0.00028 19.4 5.5 192 54-280 57-288 (290)
124 KOG1321 consensus 68.0 5 0.00013 21.8 2.8 170 122-302 146-341 (395)
125 TIGR03249 KdgD 5-dehydro-4-deo 67.8 12 0.0003 19.2 8.4 45 83-139 37-82 (296)
126 PRK10558 alpha-dehydro-beta-de 67.1 12 0.0003 19.1 11.4 170 120-312 31-223 (256)
127 cd04747 OYE_like_5_FMN Old yel 67.1 12 0.00031 19.1 5.9 57 215-271 197-264 (361)
128 PRK08176 pdxK pyridoxal kinase 66.9 11 0.00028 19.4 4.3 48 116-167 71-122 (281)
129 COG0826 Collagenase and relate 65.6 13 0.00032 18.9 7.8 70 239-308 224-304 (347)
130 KOG1588 consensus 65.1 3.8 9.7E-05 22.6 1.7 114 38-186 90-207 (259)
131 TIGR01763 MalateDH_bact malate 65.1 7 0.00018 20.8 3.0 130 128-296 71-215 (308)
132 PRK09389 (R)-citramalate synth 65.0 13 0.00033 18.8 11.0 48 48-95 46-95 (487)
133 PRK00286 xseA exodeoxyribonucl 64.7 13 0.00034 18.8 6.3 128 131-291 137-270 (443)
134 PRK13124 consensus 64.1 14 0.00035 18.7 5.3 42 217-267 185-226 (257)
135 cd00381 IMPDH IMPDH: The catal 63.6 14 0.00035 18.7 8.6 134 119-272 96-234 (325)
136 cd00452 KDPG_aldolase KDPG and 63.1 14 0.00036 18.6 10.5 152 112-307 12-175 (190)
137 TIGR01302 IMP_dehydrog inosine 62.5 14 0.00037 18.5 6.0 187 30-264 79-308 (476)
138 PRK04326 methionine synthase; 62.2 7.9 0.0002 20.4 2.9 172 37-221 16-228 (330)
139 TIGR03365 Bsubt_queE 7-cyano-7 61.7 15 0.00038 18.4 7.0 85 80-169 16-107 (238)
140 PRK08997 isocitrate dehydrogen 61.4 15 0.00039 18.4 5.4 75 113-193 144-220 (334)
141 COG0107 HisF Imidazoleglycerol 60.4 16 0.0004 18.3 5.5 81 99-188 139-221 (256)
142 cd04733 OYE_like_2_FMN Old yel 60.2 16 0.0004 18.3 8.6 63 209-273 192-267 (338)
143 cd01173 pyridoxal_pyridoxamine 60.1 14 0.00037 18.5 3.9 52 113-168 52-107 (254)
144 PRK10669 putative cation:proto 59.8 16 0.00041 18.2 6.2 47 152-202 496-543 (558)
145 cd01573 modD_like ModD; Quinol 59.2 12 0.00031 19.1 3.4 87 151-264 170-258 (272)
146 pfam04670 Gtr1_RagA Gtr1/RagA 58.7 12 0.00031 19.1 3.3 41 134-176 83-123 (230)
147 pfam00701 DHDPS Dihydrodipicol 58.6 17 0.00043 18.1 8.2 77 112-193 79-159 (289)
148 cd00650 LDH_MDH_like NAD-depen 58.5 15 0.00039 18.4 3.8 35 137-171 85-119 (263)
149 COG0159 TrpA Tryptophan syntha 58.2 17 0.00043 18.0 11.3 152 151-304 4-180 (265)
150 PRK06438 hypothetical protein; 57.8 9.5 0.00024 19.8 2.7 22 151-172 157-178 (292)
151 TIGR00973 leuA_bact 2-isopropy 57.8 17 0.00044 18.0 5.3 74 241-328 20-99 (514)
152 smart00812 Alpha_L_fucos Alpha 57.7 10 0.00027 19.5 2.9 50 109-161 77-140 (384)
153 pfam00478 IMPDH IMP dehydrogen 57.7 17 0.00044 18.0 6.3 130 119-272 226-363 (467)
154 PRK03170 dihydrodipicolinate s 57.6 17 0.00044 18.0 8.0 46 113-158 80-126 (292)
155 PRK04172 pheS phenylalanyl-tRN 57.0 18 0.00045 17.9 6.0 93 218-317 169-282 (501)
156 KOG0638 consensus 55.7 4.7 0.00012 22.0 0.8 69 238-306 265-340 (381)
157 PRK05096 guanosine 5'-monophos 55.4 19 0.00048 17.7 6.6 199 40-271 41-249 (347)
158 COG1954 GlpP Glycerol-3-phosph 55.3 19 0.00048 17.7 6.2 118 128-262 22-171 (181)
159 cd03041 GST_N_2GST_N GST_N fam 55.1 5.6 0.00014 21.5 1.1 49 98-172 8-56 (77)
160 PRK00957 methionine synthase; 54.6 15 0.00038 18.4 3.2 64 150-220 147-211 (307)
161 TIGR03239 GarL 2-dehydro-3-deo 54.6 19 0.00049 17.6 11.1 173 120-313 24-217 (249)
162 COG4087 Soluble P-type ATPase 54.5 20 0.0005 17.6 5.8 102 147-273 28-129 (152)
163 PRK05742 nicotinate-nucleotide 54.4 20 0.0005 17.6 4.7 108 126-268 155-265 (277)
164 pfam00290 Trp_syntA Tryptophan 54.2 20 0.0005 17.6 6.5 44 215-267 185-228 (258)
165 PRK12815 carB carbamoyl phosph 53.8 17 0.00043 18.1 3.4 116 179-311 579-714 (1068)
166 pfam04309 G3P_antiterm Glycero 53.3 20 0.00052 17.5 4.5 85 128-222 17-115 (174)
167 TIGR02034 CysN sulfate adenyly 53.3 20 0.00052 17.5 4.0 82 118-201 121-211 (411)
168 KOG2872 consensus 53.2 5 0.00013 21.8 0.6 95 151-251 233-350 (359)
169 PRK12330 oxaloacetate decarbox 52.7 21 0.00053 17.4 9.7 47 151-197 186-234 (499)
170 KOG1905 consensus 52.6 12 0.00031 19.1 2.5 24 115-138 98-125 (353)
171 TIGR00078 nadC nicotinate-nucl 52.4 20 0.00052 17.5 3.6 89 151-266 172-263 (276)
172 PTZ00170 D-ribulose-5-phosphat 52.0 21 0.00054 17.4 6.9 149 152-327 51-222 (224)
173 pfam01081 Aldolase KDPG and KH 51.8 21 0.00055 17.3 7.5 165 112-319 16-193 (196)
174 PRK09929 hypothetical protein; 51.4 11 0.00029 19.3 2.2 45 105-151 44-88 (91)
175 PRK13587 1-(5-phosphoribosyl)- 51.0 22 0.00056 17.2 4.8 142 138-305 52-201 (234)
176 PRK05500 bifunctional orotidin 50.8 22 0.00057 17.2 4.1 184 102-305 142-353 (478)
177 PRK05086 malate dehydrogenase; 50.3 17 0.00042 18.1 2.9 43 129-171 69-118 (312)
178 TIGR00707 argD acetylornithine 49.4 16 0.00042 18.2 2.8 95 173-283 285-383 (402)
179 cd01568 QPRTase_NadC Quinolina 49.2 23 0.0006 17.1 8.2 112 126-268 146-259 (269)
180 PRK08392 hypothetical protein; 49.1 23 0.0006 17.1 8.3 43 118-161 16-58 (215)
181 cd04740 DHOD_1B_like Dihydroor 49.1 23 0.0006 17.1 11.7 169 114-301 100-290 (296)
182 cd02940 DHPD_FMN Dihydropyrimi 49.0 24 0.0006 17.0 12.0 115 143-264 78-200 (299)
183 COG4277 Predicted DNA-binding 48.6 24 0.00061 17.0 10.8 197 90-299 58-291 (404)
184 COG5016 Pyruvate/oxaloacetate 48.3 24 0.00062 17.0 4.5 72 119-195 159-231 (472)
185 PTZ00326 phenylalanyl-tRNA syn 48.2 24 0.00062 17.0 5.8 52 259-316 228-279 (505)
186 COG0296 GlgB 1,4-alpha-glucan 48.0 24 0.00062 16.9 5.7 69 233-301 148-232 (628)
187 TIGR01334 modD modD protein; I 48.0 22 0.00057 17.2 3.3 86 149-261 173-260 (277)
188 PRK13114 consensus 48.0 24 0.00062 16.9 11.1 40 113-152 24-63 (266)
189 PRK07105 pyridoxamine kinase; 47.9 24 0.00062 16.9 4.1 18 242-259 162-179 (284)
190 pfam00056 Ldh_1_N lactate/mala 47.8 23 0.00058 17.2 3.3 34 138-171 85-118 (142)
191 PRK13132 consensus 46.8 25 0.00065 16.8 5.0 42 217-267 185-226 (246)
192 TIGR02051 MerR Hg(II)-responsi 46.8 17 0.00042 18.1 2.5 40 189-228 6-58 (126)
193 COG0351 ThiD Hydroxymethylpyri 46.7 25 0.00065 16.8 4.2 11 119-129 88-98 (263)
194 cd01337 MDH_glyoxysomal_mitoch 46.5 22 0.00055 17.3 3.0 43 129-171 68-117 (310)
195 KOG3111 consensus 46.4 26 0.00066 16.8 5.9 80 129-226 134-220 (224)
196 PRK00830 consensus 46.3 26 0.00066 16.8 4.9 76 113-194 31-106 (273)
197 PRK08385 nicotinate-nucleotide 46.0 26 0.00067 16.7 9.0 111 126-268 150-264 (279)
198 PRK13121 consensus 45.9 26 0.00067 16.7 11.1 33 231-267 204-236 (265)
199 PRK05848 nicotinate-nucleotide 45.8 26 0.00067 16.7 8.8 177 54-268 45-260 (272)
200 COG2240 PdxK Pyridoxal/pyridox 45.7 26 0.00067 16.7 3.7 33 107-140 151-183 (281)
201 pfam01120 Alpha_L_fucos Alpha- 45.6 22 0.00056 17.3 2.9 55 110-169 89-157 (344)
202 PRK08883 ribulose-phosphate 3- 45.4 27 0.00068 16.7 10.0 117 114-252 10-128 (220)
203 cd01482 vWA_collagen_alphaI-XI 45.4 21 0.00054 17.3 2.8 34 232-265 105-138 (164)
204 PRK07807 inositol-5-monophosph 44.9 27 0.00069 16.6 5.8 134 119-273 230-368 (479)
205 TIGR01858 tag_bisphos_ald clas 44.6 4.7 0.00012 22.0 -0.6 104 108-222 72-198 (282)
206 cd01336 MDH_cytoplasmic_cytoso 43.9 27 0.0007 16.6 3.2 43 128-170 77-127 (325)
207 cd04823 ALAD_PBGS_aspartate_ri 43.5 28 0.00072 16.5 5.2 196 114-317 52-317 (320)
208 PRK13119 consensus 43.4 29 0.00073 16.5 7.7 33 231-267 202-234 (261)
209 COG1894 NuoF NADH:ubiquinone o 43.3 6.6 0.00017 20.9 -0.0 263 39-317 20-345 (424)
210 PRK11121 nrdG anaerobic ribonu 43.3 29 0.00073 16.5 6.0 16 90-105 20-35 (154)
211 smart00476 DNaseIc deoxyribonu 43.2 24 0.00062 16.9 2.9 26 150-176 162-187 (276)
212 COG0039 Mdh Malate/lactate deh 43.2 29 0.00073 16.4 4.0 43 129-171 69-118 (313)
213 cd05292 LDH_2 A subgroup of L- 43.1 29 0.00073 16.4 3.7 147 129-301 67-222 (308)
214 PRK09310 aroDE bifunctional 3- 43.1 29 0.00073 16.4 7.2 123 122-262 235-360 (477)
215 PRK03220 consensus 42.9 29 0.00074 16.4 4.6 97 87-196 9-105 (257)
216 PRK13117 consensus 42.6 29 0.00075 16.4 10.8 35 114-148 29-63 (268)
217 PRK13597 imidazole glycerol ph 42.4 29 0.00075 16.4 5.0 183 87-304 9-204 (252)
218 cd01998 tRNA_Me_trans tRNA met 42.4 20 0.0005 17.6 2.3 38 86-135 27-66 (349)
219 cd00704 MDH Malate dehydrogena 42.0 30 0.00076 16.3 3.8 43 129-171 76-126 (323)
220 cd04726 KGPDC_HPS 3-Keto-L-gul 41.8 30 0.00077 16.3 9.2 127 117-270 65-192 (202)
221 TIGR03450 mycothiol_INO1 inosi 41.8 30 0.00077 16.3 5.0 18 287-304 141-158 (351)
222 cd05293 LDH_1 A subgroup of L- 41.7 30 0.00077 16.3 3.5 42 129-170 71-119 (312)
223 pfam01729 QRPTase_C Quinolinat 41.7 30 0.00077 16.3 8.8 113 125-267 44-158 (169)
224 cd01833 XynB_like SGNH_hydrola 41.4 30 0.00078 16.3 8.7 79 88-170 2-85 (157)
225 COG2221 DsrA Dissimilatory sul 41.4 30 0.00078 16.2 3.6 49 111-159 40-88 (317)
226 PRK12313 glycogen branching en 41.3 31 0.00078 16.2 4.3 29 42-70 156-188 (632)
227 PRK00143 trmU tRNA (5-methylam 41.2 21 0.00053 17.4 2.3 59 48-135 11-71 (355)
228 COG1654 BirA Biotin operon rep 41.1 28 0.00071 16.5 2.9 33 239-271 29-63 (79)
229 pfam02679 ComA (2R)-phospho-3- 41.0 31 0.00079 16.2 4.4 46 120-169 89-134 (245)
230 cd01339 LDH-like_MDH L-lactate 40.8 31 0.00079 16.2 3.3 41 129-169 66-113 (300)
231 PRK02083 imidazole glycerol ph 40.8 28 0.00073 16.5 2.9 150 87-263 8-172 (253)
232 COG1411 Uncharacterized protei 40.6 31 0.0008 16.2 5.0 172 115-324 35-227 (229)
233 COG0036 Rpe Pentose-5-phosphat 40.5 31 0.0008 16.2 4.1 132 115-271 70-204 (220)
234 cd01338 MDH_choloroplast_like 40.4 31 0.0008 16.1 3.2 43 128-170 77-127 (322)
235 PRK03906 mannonate dehydratase 40.4 32 0.0008 16.1 4.7 30 42-71 69-102 (389)
236 PRK08654 pyruvate carboxylase 40.3 29 0.00073 16.4 2.9 44 85-128 207-262 (497)
237 PRK07329 hypothetical protein; 40.2 32 0.00081 16.1 5.9 100 189-301 140-244 (246)
238 pfam01717 Meth_synt_2 Cobalami 40.2 32 0.00081 16.1 3.2 22 63-84 49-71 (324)
239 COG0602 NrdG Organic radical a 39.4 33 0.00083 16.0 4.9 85 80-169 16-106 (212)
240 PRK05402 glycogen branching en 39.2 33 0.00084 16.0 3.8 57 244-300 274-337 (730)
241 TIGR02700 flavo_MJ0208 archaeo 39.2 31 0.00079 16.2 2.9 47 65-111 151-203 (237)
242 COG3207 DIT1 Pyoverdine/dityro 39.0 15 0.00038 18.4 1.3 115 130-258 25-167 (330)
243 cd03310 CIMS_like CIMS - Cobal 38.9 33 0.00085 16.0 4.5 11 62-72 47-57 (321)
244 PRK06843 inositol-5-monophosph 38.8 33 0.00085 16.0 6.6 138 114-272 151-293 (404)
245 cd04724 Tryptophan_synthase_al 38.8 33 0.00085 16.0 8.1 31 233-267 188-218 (242)
246 PRK12616 pyridoxal kinase; Rev 38.7 33 0.00085 16.0 4.0 21 241-261 155-175 (270)
247 cd02803 OYE_like_FMN_family Ol 38.6 34 0.00085 16.0 7.7 63 240-304 224-289 (327)
248 cd05291 HicDH_like L-2-hydroxy 38.5 34 0.00086 15.9 3.7 134 138-301 84-221 (306)
249 PRK06223 malate dehydrogenase; 38.4 34 0.00086 15.9 3.9 43 129-171 69-118 (312)
250 cd01475 vWA_Matrilin VWA_Matri 38.3 29 0.00075 16.4 2.6 35 231-265 109-143 (224)
251 cd01481 vWA_collagen_alpha3-VI 38.1 34 0.00087 15.9 3.1 33 232-264 108-140 (165)
252 KOG3043 consensus 38.1 18 0.00046 17.9 1.5 80 34-121 84-163 (242)
253 PRK09121 5-methyltetrahydropte 38.0 24 0.00061 17.0 2.2 153 37-200 10-203 (339)
254 PRK13134 consensus 37.9 34 0.00087 15.9 4.4 33 114-146 31-63 (257)
255 TIGR00007 TIGR00007 phosphorib 37.9 31 0.0008 16.2 2.7 125 107-259 17-167 (241)
256 PRK12653 fructose-6-phosphate 37.7 35 0.00088 15.9 4.6 46 215-264 142-187 (220)
257 pfam00977 His_biosynth Histidi 37.6 35 0.00088 15.9 4.8 80 112-197 25-104 (229)
258 PRK05458 guanosine 5'-monophos 37.5 35 0.00089 15.8 6.6 198 41-272 33-238 (326)
259 PRK06361 hypothetical protein; 37.4 35 0.00089 15.8 5.5 149 118-303 17-173 (216)
260 cd05294 LDH-like_MDH_nadp A la 37.3 35 0.0009 15.8 3.3 43 129-171 72-121 (309)
261 cd01133 F1-ATPase_beta F1 ATP 36.5 36 0.00092 15.7 4.8 56 129-184 125-182 (274)
262 pfam02896 PEP-utilizers_C PEP- 36.5 36 0.00092 15.7 10.9 180 111-309 57-259 (292)
263 PRK08745 ribulose-phosphate 3- 36.4 36 0.00092 15.7 9.8 123 114-263 14-138 (223)
264 PRK01153 nicotinamide-nucleoti 36.3 28 0.00071 16.5 2.3 17 275-291 141-157 (170)
265 cd02071 MM_CoA_mut_B12_BD meth 36.3 36 0.00093 15.7 7.0 66 217-302 41-108 (122)
266 PRK08904 consensus 36.2 36 0.00093 15.7 7.3 171 112-325 18-201 (207)
267 pfam05902 4_1_CTD 4.1 protein 36.0 37 0.00093 15.7 3.8 35 131-169 71-105 (114)
268 pfam06778 Chlor_dismutase Chlo 35.8 37 0.00093 15.7 2.8 82 232-325 37-125 (193)
269 TIGR01163 rpe ribulose-phospha 35.8 37 0.00094 15.7 4.1 101 39-192 80-194 (216)
270 PRK07455 keto-hydroxyglutarate 35.6 37 0.00095 15.6 6.8 172 112-327 21-206 (210)
271 COG0859 RfaF ADP-heptose:LPS h 35.6 37 0.00095 15.6 5.8 104 114-236 156-263 (334)
272 PRK12833 acetyl-CoA carboxylas 35.5 25 0.00064 16.9 1.9 60 217-277 146-215 (458)
273 TIGR01862 N2-ase-Ialpha nitrog 35.2 38 0.00096 15.6 4.4 104 91-197 27-166 (510)
274 TIGR02201 heptsyl_trn_III lipo 35.1 37 0.00095 15.6 2.8 34 152-191 17-50 (347)
275 TIGR01369 CPSaseII_lrg carbamo 35.0 21 0.00055 17.3 1.5 109 183-311 611-734 (1089)
276 PTZ00117 malate dehydrogenase; 34.9 33 0.00085 16.0 2.5 32 138-169 85-116 (313)
277 cd03812 GT1_CapH_like This fam 34.8 38 0.00098 15.5 3.3 93 206-302 201-296 (358)
278 pfam08924 DUF1906 Domain of un 34.7 38 0.00098 15.5 2.8 15 254-268 47-61 (135)
279 KOG2368 consensus 34.7 38 0.00098 15.5 7.6 141 152-303 75-245 (316)
280 PRK05442 malate dehydrogenase; 34.7 38 0.00098 15.5 3.0 43 128-170 79-129 (325)
281 COG0157 NadC Nicotinate-nucleo 34.6 39 0.00098 15.5 8.1 110 126-266 153-264 (280)
282 PRK13585 1-(5-phosphoribosyl)- 34.6 39 0.00098 15.5 4.1 100 90-200 10-109 (240)
283 COG0113 HemB Delta-aminolevuli 34.5 39 0.00099 15.5 6.9 108 114-239 59-176 (330)
284 PRK13123 consensus 34.2 39 0.001 15.5 8.6 36 113-148 26-61 (256)
285 smart00354 HTH_LACI helix_turn 34.2 23 0.00058 17.1 1.5 44 249-299 2-46 (70)
286 cd00300 LDH_like L-lactate deh 34.0 39 0.001 15.5 3.5 43 129-171 66-115 (300)
287 pfam00356 LacI Bacterial regul 33.8 22 0.00057 17.2 1.5 43 249-298 1-44 (46)
288 KOG2876 consensus 33.8 33 0.00085 16.0 2.3 179 93-283 18-206 (323)
289 PRK09282 pyruvate carboxylase 33.7 40 0.001 15.4 10.0 43 151-194 186-229 (580)
290 COG1509 KamA Lysine 2,3-aminom 33.6 40 0.001 15.4 9.0 198 44-260 73-283 (369)
291 PRK01130 N-acetylmannosamine-6 33.4 40 0.001 15.4 8.9 77 103-194 11-94 (222)
292 PRK06091 membrane protein FdrA 33.4 40 0.001 15.4 7.5 195 41-263 330-535 (555)
293 KOG4746 consensus 33.1 41 0.001 15.4 4.2 16 54-69 34-49 (423)
294 PRK07428 nicotinate-nucleotide 33.0 41 0.001 15.4 9.0 111 126-267 158-271 (285)
295 PRK06015 keto-hydroxyglutarate 33.0 41 0.001 15.4 7.0 171 112-325 23-206 (212)
296 TIGR03451 mycoS_dep_FDH mycoth 32.9 41 0.001 15.4 5.0 11 39-49 24-34 (358)
297 TIGR00175 mito_nad_idh isocitr 32.9 27 0.00068 16.7 1.7 81 117-206 154-240 (348)
298 PRK01033 imidazole glycerol ph 32.8 41 0.001 15.3 4.6 182 87-304 8-204 (253)
299 PRK00066 ldh L-lactate dehydro 32.7 41 0.001 15.3 3.4 43 129-171 73-122 (315)
300 pfam09630 DUF2024 Domain of un 32.7 31 0.0008 16.2 2.0 27 94-129 49-75 (81)
301 cd01480 vWA_collagen_alpha_1-V 32.5 42 0.0011 15.3 2.7 51 232-297 111-165 (186)
302 PRK08782 consensus 32.4 42 0.0011 15.3 7.3 171 112-325 25-208 (219)
303 TIGR01305 GMP_reduct_1 guanosi 32.2 42 0.0011 15.3 6.3 212 25-269 25-246 (343)
304 pfam01373 Glyco_hydro_14 Glyco 32.0 42 0.0011 15.2 6.8 33 105-137 39-71 (399)
305 cd01169 HMPP_kinase 4-amino-5- 31.7 43 0.0011 15.2 3.4 62 123-187 21-89 (242)
306 PTZ00082 L-lactate dehydrogena 31.6 43 0.0011 15.2 3.5 42 129-170 75-128 (322)
307 PRK00278 trpC indole-3-glycero 31.6 43 0.0011 15.2 7.2 96 151-271 149-247 (261)
308 pfam06263 consensus 31.6 43 0.0011 15.2 8.0 150 43-201 340-502 (514)
309 PRK05718 keto-hydroxyglutarate 31.3 43 0.0011 15.2 7.1 172 112-326 23-207 (212)
310 cd00957 Transaldolase_TalAB Tr 31.3 43 0.0011 15.2 4.1 59 214-282 203-263 (313)
311 TIGR01511 ATPase-IB1_Cu copper 31.3 43 0.0011 15.2 5.6 83 132-245 361-444 (545)
312 PRK08591 acetyl-CoA carboxylas 31.2 43 0.0011 15.2 3.7 18 119-136 15-32 (449)
313 PRK13120 consensus 31.1 44 0.0011 15.1 7.7 42 214-264 196-237 (285)
314 PRK13758 anaerobic sulfatase-m 30.9 44 0.0011 15.1 17.4 196 92-292 11-221 (370)
315 pfam03599 CdhD CO dehydrogenas 30.8 44 0.0011 15.1 15.2 204 83-323 5-230 (384)
316 PRK13115 consensus 30.6 44 0.0011 15.1 4.1 34 114-147 36-69 (269)
317 COG0473 LeuB Isocitrate/isopro 30.4 39 0.00099 15.5 2.2 60 113-172 153-214 (348)
318 PRK08072 nicotinate-nucleotide 30.4 45 0.0011 15.1 8.2 105 126-266 153-262 (277)
319 COG1377 FlhB Flagellar biosynt 30.4 30 0.00077 16.3 1.7 45 270-314 269-327 (363)
320 cd04732 HisA HisA. Phosphorib 30.4 45 0.0011 15.1 4.7 81 113-199 26-106 (234)
321 PRK06857 consensus 30.3 45 0.0011 15.1 7.1 172 112-326 20-204 (209)
322 COG0482 TrmU Predicted tRNA(5- 30.3 42 0.0011 15.2 2.4 59 49-135 11-69 (356)
323 KOG2598 consensus 30.1 39 0.001 15.5 2.2 47 74-137 156-202 (523)
324 PRK13239 alkylmercury lyase; P 30.0 28 0.00072 16.5 1.5 78 198-277 7-88 (206)
325 PRK05211 consensus 29.7 46 0.0012 15.0 5.4 177 92-304 4-200 (248)
326 CHL00144 odpB pyruvate dehydro 29.7 25 0.00065 16.8 1.2 108 143-263 122-233 (326)
327 pfam01207 Dus Dihydrouridine s 29.6 46 0.0012 15.0 10.7 136 114-268 64-217 (309)
328 cd02932 OYE_YqiM_FMN Old yello 29.5 46 0.0012 15.0 7.0 56 209-264 197-261 (336)
329 cd03315 MLE_like Muconate lact 29.5 46 0.0012 15.0 5.8 157 113-305 84-240 (265)
330 COG0620 MetE Methionine syntha 29.5 46 0.0012 15.0 4.4 27 59-85 49-76 (330)
331 cd01990 Alpha_ANH_like_I This 29.5 46 0.0012 15.0 7.8 139 113-300 36-190 (202)
332 COG5014 Predicted Fe-S oxidore 29.5 46 0.0012 15.0 6.8 165 78-257 35-213 (228)
333 TIGR00874 talAB transaldolase; 29.4 47 0.0012 15.0 2.6 59 217-285 211-271 (324)
334 PRK13140 consensus 29.3 47 0.0012 14.9 4.9 34 114-147 26-59 (257)
335 PRK12346 transaldolase A; Prov 29.3 47 0.0012 14.9 4.0 91 182-282 164-264 (316)
336 cd01572 QPRTase Quinolinate ph 29.0 47 0.0012 14.9 4.1 110 126-268 147-258 (268)
337 COG1094 Predicted RNA-binding 28.8 18 0.00047 17.8 0.3 17 114-130 60-76 (194)
338 cd04824 eu_ALAD_PBGS_cysteine_ 28.7 48 0.0012 14.9 5.1 197 114-316 49-317 (320)
339 PRK00115 hemE uroporphyrinogen 28.7 48 0.0012 14.9 5.2 19 249-267 253-271 (347)
340 PRK12338 hypothetical protein; 28.6 37 0.00093 15.7 1.8 68 213-290 194-265 (320)
341 PRK12276 putative heme peroxid 28.6 36 0.00092 15.7 1.8 38 85-130 57-94 (247)
342 PRK12339 2-phosphoglycerate ki 28.6 38 0.00098 15.6 1.9 15 123-137 22-36 (197)
343 cd04888 ACT_PheB-BS C-terminal 28.5 45 0.0011 15.1 2.3 23 246-268 14-36 (76)
344 COG4820 EutJ Ethanolamine util 28.4 38 0.00096 15.6 1.9 50 128-188 36-85 (277)
345 pfam06908 DUF1273 Protein of u 28.2 49 0.0012 14.8 5.4 69 128-204 41-110 (177)
346 PRK11815 tRNA-dihydrouridine s 28.0 49 0.0013 14.8 9.0 134 115-265 73-234 (333)
347 PRK08123 histidinol-phosphatas 28.0 49 0.0013 14.8 5.3 172 119-302 21-245 (266)
348 COG1570 XseA Exonuclease VII, 28.0 49 0.0013 14.8 4.6 111 131-256 137-250 (440)
349 pfam00490 ALAD Delta-aminolevu 27.9 49 0.0013 14.8 6.9 195 113-316 54-319 (322)
350 COG3246 Uncharacterized conser 27.8 49 0.0013 14.8 7.7 168 112-295 25-217 (298)
351 PRK13118 consensus 27.6 50 0.0013 14.7 11.1 46 213-267 191-236 (269)
352 COG0807 RibA GTP cyclohydrolas 27.6 28 0.00071 16.5 1.1 143 149-327 31-192 (193)
353 TIGR03617 F420_MSMEG_2256 prob 27.5 50 0.0013 14.7 3.3 32 241-272 276-307 (318)
354 TIGR01772 MDH_euk_gproteo mala 27.3 50 0.0013 14.7 2.7 85 129-223 88-188 (379)
355 TIGR02880 cbbX_cfxQ CbbX prote 27.3 50 0.0013 14.7 2.9 58 107-164 64-122 (284)
356 CHL00076 chlB photochlorophyll 27.3 25 0.00064 16.9 0.8 103 206-315 219-343 (510)
357 KOG1798 consensus 27.2 44 0.0011 15.2 2.0 36 28-65 1126-1162(2173)
358 TIGR01361 DAHP_synth_Bsub phos 26.9 51 0.0013 14.7 2.6 121 110-261 32-164 (262)
359 pfam10120 MethylPyrKinase Arch 26.9 51 0.0013 14.7 8.4 104 142-253 59-169 (169)
360 cd06592 GH31_glucosidase_KIAA1 26.8 51 0.0013 14.6 6.7 221 43-296 20-283 (303)
361 cd00951 KDGDH 5-dehydro-4-deox 26.8 51 0.0013 14.6 8.9 44 84-139 33-77 (289)
362 PRK09434 aminoimidazole ribosi 26.8 51 0.0013 14.6 7.3 26 44-69 47-72 (304)
363 pfam05582 Peptidase_U57 YabG p 26.7 52 0.0013 14.6 4.9 83 114-199 139-238 (287)
364 TIGR00491 aIF-2 translation in 26.3 51 0.0013 14.7 2.2 179 64-264 58-262 (1145)
365 PRK05269 transaldolase B; Prov 26.3 52 0.0013 14.6 4.1 251 1-287 1-270 (320)
366 TIGR03279 cyano_FeS_chp putati 26.3 2.1 5.5E-05 24.4 -4.8 110 95-221 83-205 (433)
367 cd03522 MoeA_like MoeA_like. T 26.0 42 0.0011 15.2 1.8 83 179-272 178-260 (312)
368 PRK11929 putative bifunctional 25.8 54 0.0014 14.5 3.7 74 212-287 836-914 (953)
369 pfam03796 DnaB_C DnaB-like hel 25.7 54 0.0014 14.5 12.1 152 144-308 28-183 (186)
370 cd03311 CIMS_C_terminal_like C 25.3 54 0.0014 14.5 2.2 112 125-255 164-296 (332)
371 PRK12568 glycogen branching en 25.2 55 0.0014 14.4 3.8 111 188-301 203-337 (730)
372 PRK13745 anaerobic sulfatase-m 25.2 55 0.0014 14.4 17.5 171 88-263 14-200 (412)
373 COG2074 2-phosphoglycerate kin 25.2 51 0.0013 14.6 2.1 33 112-145 28-60 (299)
374 cd00954 NAL N-Acetylneuraminic 24.9 55 0.0014 14.4 8.2 181 59-255 29-223 (288)
375 PRK01207 methionine synthase; 24.9 56 0.0014 14.4 4.9 143 38-183 12-192 (343)
376 cd00717 URO-D Uroporphyrinogen 24.9 56 0.0014 14.4 5.0 19 249-267 243-261 (335)
377 PRK02910 light-independent pro 24.8 56 0.0014 14.4 5.5 207 86-319 85-338 (524)
378 COG0299 PurN Folate-dependent 24.6 56 0.0014 14.4 6.1 106 146-270 9-114 (200)
379 cd01472 vWA_collagen von Wille 24.5 56 0.0014 14.4 3.0 34 232-265 105-138 (164)
380 KOG1494 consensus 24.4 57 0.0014 14.3 2.7 113 120-234 89-248 (345)
381 TIGR02699 archaeo_AfpA archaeo 24.3 50 0.0013 14.7 1.9 63 235-304 5-67 (176)
382 pfam09162 Tap-RNA_bind Tap, RN 24.2 16 0.00042 18.2 -0.6 62 41-131 5-66 (88)
383 PRK06270 homoserine dehydrogen 24.1 57 0.0015 14.3 6.1 125 156-298 83-210 (342)
384 PRK13113 consensus 24.0 58 0.0015 14.3 11.5 33 231-267 204-236 (263)
385 PRK03620 5-dehydro-4-deoxygluc 24.0 58 0.0015 14.3 8.6 31 108-138 46-77 (296)
386 COG2984 ABC-type uncharacteriz 23.9 58 0.0015 14.3 5.4 146 120-303 50-195 (322)
387 PRK10537 voltage-gated potassi 23.7 58 0.0015 14.3 5.4 49 133-192 269-317 (356)
388 cd00755 YgdL_like Family of ac 23.7 58 0.0015 14.3 4.8 97 120-231 25-132 (231)
389 COG1902 NemA NADH:flavin oxido 23.5 59 0.0015 14.2 8.4 102 209-316 192-307 (363)
390 COG3882 FkbH Predicted enzyme 23.4 47 0.0012 14.9 1.6 51 245-300 506-556 (574)
391 cd05290 LDH_3 A subgroup of L- 23.4 59 0.0015 14.2 3.7 43 129-171 68-119 (307)
392 pfam05999 Herpes_U5 Herpesviru 23.4 37 0.00093 15.7 1.0 21 112-132 169-190 (447)
393 cd00408 DHDPS-like Dihydrodipi 23.3 59 0.0015 14.2 8.8 76 112-192 75-154 (281)
394 PRK09222 isocitrate dehydrogen 23.1 60 0.0015 14.2 4.4 60 114-173 147-208 (482)
395 PRK04435 hypothetical protein; 23.0 60 0.0015 14.2 3.5 34 235-268 71-104 (146)
396 TIGR00668 apaH bis(5'-nucleosy 23.0 40 0.001 15.4 1.2 77 169-256 4-80 (280)
397 TIGR02146 LysS_fung_arch homoc 22.8 61 0.0015 14.1 8.7 143 113-264 17-165 (355)
398 PRK09513 fruK 1-phosphofructok 22.7 61 0.0016 14.1 3.6 81 112-203 112-195 (312)
399 PRK10933 trehalose-6-phosphate 22.6 61 0.0016 14.1 6.2 12 315-326 458-469 (551)
400 PRK06151 N-ethylammeline chlor 22.5 62 0.0016 14.1 7.0 111 78-200 113-246 (480)
401 COG2182 MalE Maltose-binding p 22.5 62 0.0016 14.1 3.7 48 145-193 50-99 (420)
402 COG3286 Uncharacterized protei 22.4 62 0.0016 14.1 9.2 164 113-304 10-178 (204)
403 COG3457 Predicted amino acid r 22.3 62 0.0016 14.1 5.0 81 89-170 76-160 (353)
404 KOG2784 consensus 22.3 56 0.0014 14.4 1.8 180 119-316 32-249 (483)
405 PRK12772 bifunctional flagella 22.3 25 0.00064 16.8 0.0 44 270-313 525-582 (609)
406 PRK02271 methylenetetrahydrome 22.2 62 0.0016 14.1 3.2 27 242-268 283-309 (324)
407 COG1323 Predicted nucleotidylt 22.2 55 0.0014 14.4 1.8 47 99-153 38-84 (358)
408 TIGR01263 4HPPD 4-hydroxypheny 22.1 59 0.0015 14.2 1.9 54 242-298 260-317 (379)
409 PRK13352 thiamine biosynthesis 22.0 63 0.0016 14.0 3.0 106 88-204 39-177 (433)
410 PRK06298 type III secretion sy 21.8 32 0.00082 16.1 0.5 45 270-314 263-321 (360)
411 COG1400 SEC65 Signal recogniti 21.8 63 0.0016 14.0 2.2 16 118-133 34-49 (93)
412 PRK09177 xanthine-guanine phos 21.8 64 0.0016 14.0 3.0 28 238-272 95-122 (156)
413 TIGR03565 alk_sulf_monoox alka 21.7 64 0.0016 14.0 2.4 174 51-255 26-245 (346)
414 PRK09140 2-dehydro-3-deoxy-6-p 21.5 64 0.0016 14.0 6.7 156 112-314 18-191 (206)
415 COG0770 MurF UDP-N-acetylmuram 21.5 64 0.0016 14.0 3.4 81 214-296 344-428 (451)
416 PRK03692 putative UDP-N-acetyl 21.5 64 0.0016 14.0 4.6 77 184-267 113-196 (246)
417 KOG0002 consensus 21.4 35 0.0009 15.8 0.6 29 39-67 19-47 (48)
418 pfam08219 TOM13 Outer membrane 21.4 12 0.00032 19.0 -1.7 28 216-244 31-58 (78)
419 pfam04108 APG17 Autophagy prot 21.3 24 0.00061 17.0 -0.2 80 146-226 212-301 (410)
420 smart00642 Aamy Alpha-amylase 21.2 65 0.0017 13.9 6.8 20 281-300 68-87 (166)
421 TIGR00871 zwf glucose-6-phosph 21.1 41 0.001 15.4 0.9 42 241-282 265-310 (498)
422 PRK13877 conjugal transfer rel 21.1 65 0.0017 13.9 2.7 40 273-312 10-55 (114)
423 pfam10007 DUF2250 Uncharacteri 21.0 43 0.0011 15.2 1.0 44 213-258 8-51 (93)
424 PRK09490 metH B12-dependent me 21.0 66 0.0017 13.9 4.4 195 55-262 373-600 (1229)
425 PRK08462 biotin carboxylase; V 21.0 66 0.0017 13.9 6.0 60 217-277 145-214 (446)
426 cd04104 p47_IIGP_like p47 (47- 20.8 66 0.0017 13.9 2.9 25 119-143 97-122 (197)
427 cd06565 GH20_GcnA-like Glycosy 20.8 66 0.0017 13.9 6.6 63 48-131 13-75 (301)
428 KOG3123 consensus 20.7 52 0.0013 14.6 1.4 122 150-295 145-270 (272)
429 COG1717 RPL32 Ribosomal protei 20.7 58 0.0015 14.3 1.6 53 178-230 68-126 (133)
430 PRK12337 2-phosphoglycerate ki 20.6 54 0.0014 14.5 1.4 150 112-269 200-378 (492)
431 cd04738 DHOD_2_like Dihydrooro 20.5 67 0.0017 13.8 11.2 145 113-264 58-236 (327)
432 smart00528 HNS Domain in histo 20.5 60 0.0015 14.2 1.6 39 19-57 6-44 (46)
433 TIGR03572 WbuZ glycosyl amidat 20.5 67 0.0017 13.8 4.6 183 87-305 8-206 (232)
434 PRK00748 1-(5-phosphoribosyl)- 20.5 67 0.0017 13.8 5.3 180 89-304 6-197 (241)
435 cd03575 NTR_WFIKKN NTR domain, 20.4 43 0.0011 15.2 0.9 26 66-95 54-79 (109)
436 cd01320 ADA Adenosine deaminas 20.3 68 0.0017 13.8 10.5 126 115-260 140-268 (325)
437 TIGR03176 AllC allantoate amid 20.3 68 0.0017 13.8 2.0 19 281-299 326-344 (406)
438 cd03040 GST_N_mPGES2 GST_N fam 20.2 68 0.0017 13.8 2.4 35 98-147 8-44 (77)
439 PRK09229 N-formimino-L-glutama 20.2 68 0.0017 13.8 9.3 47 79-135 107-156 (457)
No 1
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=0 Score=1011.87 Aligned_cols=287 Identities=50% Similarity=0.846 Sum_probs=282.3
Q ss_pred HCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 21488888889882450017998668999999997498236525788787675089726999866522353522344678
Q gi|254780676|r 29 KIHKPDTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATG 108 (329)
Q Consensus 29 k~~~p~~~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G 108 (329)
.+..+..|++|||+|||+++|.+++|.++++++++++||||||||+||||+|||++||||||||||+|||+|+||+|+||
T Consensus 3 ~~~~~~~p~~rkP~Wlkvk~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gTATFMIlGd~CTR~C~FC~V~tg 82 (290)
T PRK12928 3 TVYSAAEPILRLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQGTATFLLMGSICTRRCAFCQVAKG 82 (290)
T ss_pred CCCCCCCCCCCCCHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 42348998778964328638998349999999997799255678889974886699842899667863548985155379
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHC
Q ss_conf 99888823579999999970775189850544534532589999999999853358689981546234468-99987410
Q gi|254780676|r 109 KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPH-ALEKVVSA 187 (329)
Q Consensus 109 ~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~-al~~v~~A 187 (329)
+|.++|++||+|||+||++|||+||||||||||||+||||+|||+||++||+++|+++||+|||||+|+.+ +|++|++|
T Consensus 83 ~P~~lD~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~al~~v~~a 162 (290)
T PRK12928 83 RPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGVARALATVLAA 162 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHC
T ss_conf 98989803479999999983897689841236788664529999999999845998679970711136878999999846
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 70233201383000275638970358999999999970891670140488764206889999999996699399750222
Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
+|||||||||||||||+.|||+|+|+|||++|+++|+.++++.||||||||||||+|||+++|+||+++|||||||||||
T Consensus 163 ~pdV~nHNiETV~rL~~~VRp~A~Y~rSL~vL~~ak~~~~~i~TKSgiMvGLGEt~eEv~~~~~DLr~~gvdilTiGQYL 242 (290)
T PRK12928 163 KPDCFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPGIPTKSGLMLGLGETEDEVIETLRDLRAVDCDRLTIGQYL 242 (290)
T ss_pred CCHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 85465455012043171248855089999999999973888524134588605889999999999998199899824025
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 786100780002384699999999997496243404830010318999
Q gi|254780676|r 268 QPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDD 315 (329)
Q Consensus 268 ~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~ 315 (329)
|||++|+||+|||+|++|++|+++|++|||++|+|||||||||||+||
T Consensus 243 ~Ps~~h~pV~ryv~P~eF~~~~~~a~~~GF~~V~SgPlVRSSY~A~eq 290 (290)
T PRK12928 243 RPSLAHLPVQRYWTPEEFEALGQIARELGFKHVRSGPLVRSSYHAGEQ 290 (290)
T ss_pred CCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf 888666883335698999999999997699679833740033463659
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=1010.41 Aligned_cols=302 Identities=59% Similarity=0.977 Sum_probs=295.4
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 77755682421488888889882450017998668999999997498236525788787675089726999866522353
Q gi|254780676|r 20 NAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRA 99 (329)
Q Consensus 20 ~~~~~r~p~k~~~p~~~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~ 99 (329)
..+..|+|.+...+..+.++||+|||+|+|.+++|.++++++++++||||||||+||||+|||++|||||||||++|||+
T Consensus 4 ~~~~~~~p~~~~~~~~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~tATFmImG~~CTR~ 83 (306)
T COG0320 4 ADKMARIPVKNVRPNEELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRGTATFMILGDICTRR 83 (306)
T ss_pred CCCCCCCCHHHCCCCCHHCCCCHHHEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCEEEEECCCHHCCC
T ss_conf 31023572210686420002857654038888318999999986698525256789976887167833776415132267
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 52234467899888823579999999970775189850544534532589999999999853358689981546234468
Q gi|254780676|r 100 CTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPH 179 (329)
Q Consensus 100 C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~ 179 (329)
|+||+|+||+|.++|++||+|||+||+.|||+||||||||||||+||||+|||+||++||+.+|+++||+|+|||+|+.+
T Consensus 84 C~FC~V~~g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~iEvL~PDF~G~~~ 163 (306)
T COG0320 84 CRFCDVKTGRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDD 163 (306)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 88531478999999974278999999983898699975315666564568999999999963999648983865467899
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 99987410702332013830002756389703589999999999708916701404887642068899999999966993
Q gi|254780676|r 180 ALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD 259 (329)
Q Consensus 180 al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329)
+|++|++|+|||||||+|||||||+.|||+|+|+|||++|+++|+.+|++.||||||||||||++||+++|+|||++|||
T Consensus 164 al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvd 243 (306)
T COG0320 164 ALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVD 243 (306)
T ss_pred HHHHHHHCCCCHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999836961100452000011425689876888999999999858986311213550577689999999999985998
Q ss_pred EEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99750222786100780002384699999999997496243404830010318999999999
Q gi|254780676|r 260 FLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKN 321 (329)
Q Consensus 260 ilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~ 321 (329)
|||||||||||++|+||+|||+|+||++|+++|++|||.+|+|||||||||||+++|..+..
T Consensus 244 ilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~~~ 305 (306)
T COG0320 244 ILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEV 305 (306)
T ss_pred EEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99730014776245883321188999999999997460654057630020020789987630
No 3
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=0 Score=1000.37 Aligned_cols=283 Identities=64% Similarity=1.036 Sum_probs=278.4
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 88898824500179986689999999974982365257887876750897269998665223535223446789988882
Q gi|254780676|r 36 EKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDP 115 (329)
Q Consensus 36 ~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~ 115 (329)
...|||+|||+++|.+++|.++++++++++||||||||+||||+|||++||||||||||+|||+|+||+|+||+|.++|+
T Consensus 2 ~~~rkP~Wlkvk~p~~~~~~~~k~~l~~~~L~TVCeeA~CPNi~ECw~~gTATFMIlG~~CTR~C~FC~V~tG~P~~~D~ 81 (289)
T PRK05481 2 EILRKPDWLRVKLPTGERYTETKALLRENGLHTVCEEASCPNIGECWSHGTATFMILGDICTRRCPFCDVATGRPLPLDP 81 (289)
T ss_pred CCCCCCHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98879653176389984199999999977992555788999738875998506776578765788774078899898870
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHCCCHHHHH
Q ss_conf 3579999999970775189850544534532589999999999853358689981546234468-999874107023320
Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPH-ALEKVVSAKPDVFNH 194 (329)
Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~-al~~v~~A~pdV~nH 194 (329)
+||+|||+||++|||+||||||||||||+||||+|||+||++||+.+|+++||+|||||+|+.+ +|++|++|+||||||
T Consensus 82 ~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nH 161 (289)
T PRK05481 82 DEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTTIEVLIPDFRGRKDAALEIVVAAPPDVFNH 161 (289)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHC
T ss_conf 30799999999828976999634166665655499999999998559997799707211469999999998567177643
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC
Q ss_conf 13830002756389703589999999999708916701404887642068899999999966993997502227861007
Q gi|254780676|r 195 NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHH 274 (329)
Q Consensus 195 NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~ 274 (329)
|||||||||+.|||+|+|+|||++|+++|+.+|++.||||||||||||++||+++|+||+++||||||||||||||++|+
T Consensus 162 NiETV~rL~~~VRp~a~Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiGQYL~Ps~~hl 241 (289)
T PRK05481 162 NLETVPRLYKRVRPGADYERSLELLKRAKELDPGIPTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIGQYLQPSRKHL 241 (289)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 51310443623388233899999999999748998241356775578899999999999981998998340358886668
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 80002384699999999997496243404830010318999999
Q gi|254780676|r 275 KVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLR 318 (329)
Q Consensus 275 pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~ 318 (329)
||+|||+|+||++|+++|++|||++|+|||||||||||+++|..
T Consensus 242 pV~ryv~P~eF~~~~~~a~~~GF~~V~SgPlVRSSY~A~~~~~~ 285 (289)
T PRK05481 242 PVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQFKG 285 (289)
T ss_pred CCEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 84335698999999999997599679823740020426899866
No 4
>KOG2672 consensus
Probab=100.00 E-value=0 Score=829.88 Aligned_cols=320 Identities=45% Similarity=0.771 Sum_probs=295.8
Q ss_pred CCCCCCHHHCCCCCCCCCCHH---H--CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH
Q ss_conf 566542011177777556824---2--14888888898824500179986689999999974982365257887876750
Q gi|254780676|r 8 INKKKHVLHATPNAERLRHPE---K--IHKPDTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECW 82 (329)
Q Consensus 8 ~~~~~~~~~~~~~~~~~r~p~---k--~~~p~~~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw 82 (329)
+++.+++.....+.+.++... + .+.....++|+|.|||.++|.|++|.+++..+++++||||||||+||||||||
T Consensus 23 l~~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECW 102 (360)
T KOG2672 23 LAKGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECW 102 (360)
T ss_pred HCCCCCHHHHHCCCCCCCCCCCHHHCHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHCC
T ss_conf 41599666663688632221023423355403333469866516587875589999888647412201430699414124
Q ss_pred CCC-----CEEEEEECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 897-----269998665223535223446789-98888235799999999707751898505445345325899999999
Q gi|254780676|r 83 NKN-----HATFMILGAICTRACTFCNVATGK-PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVIS 156 (329)
Q Consensus 83 ~~g-----tATFMilG~~CTR~C~FC~V~~G~-P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~ 156 (329)
++| |||+|+|||+|||+||||+|+|.+ |.|+||+||++.|+||+.+||.|+|||||||||||||||.|||+||+
T Consensus 103 gG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq 182 (360)
T KOG2672 103 GGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQ 182 (360)
T ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 88987523689886347434675201210378896779998644899999718886999711456476752278999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCE
Q ss_conf 9985335868998154623446899987410702332013830002756389-703589999999999708916701404
Q gi|254780676|r 157 AIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGI 235 (329)
Q Consensus 157 ~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGl 235 (329)
.||+++|++.||+|+|||+|+.+++++|..+|.|||+||||||++|++-||. +|+|+|||+||++||+..|++.|||+|
T Consensus 183 ~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsi 262 (360)
T KOG2672 183 KIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSI 262 (360)
T ss_pred HHHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHH
T ss_conf 99852842321324755457347999998537400001114087602333185401677699999877518870120210
Q ss_pred EEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 88764206889999999996699399750222786100780002384699999999997496243404830010318999
Q gi|254780676|r 236 MLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDD 315 (329)
Q Consensus 236 MvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~ 315 (329)
|+|||||+|||.++|.|||+++||++|+|||+||+++|++|++||+|+-|+.|+++|.++||.+|+|||||||||.|+|+
T Consensus 263 Mlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSsykage~ 342 (360)
T KOG2672 263 MLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSSYKAGEY 342 (360)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCEEEECCCCEEECHHHHHHH
T ss_conf 00267888999999999997197088400005775344314785387887899997551454896368544221110378
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999985413
Q gi|254780676|r 316 FLRLKNNRRQHL 327 (329)
Q Consensus 316 ~~~~~~~~~~~~ 327 (329)
|.+.....++..
T Consensus 343 ~i~~~l~~r~~~ 354 (360)
T KOG2672 343 FIKNVLEKRKSK 354 (360)
T ss_pred HHHHHHHHCCCC
T ss_conf 999998741367
No 5
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=100.00 E-value=0 Score=645.70 Aligned_cols=288 Identities=49% Similarity=0.874 Sum_probs=281.9
Q ss_pred CCCCCCCHHHCCCCC-CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHC-----CCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 888898824500179-9866899999999749823652578878767508-----9726999866522353522344678
Q gi|254780676|r 35 TEKMQKPDWIRVRAP-VSSGYKETYNILRSRNLTTVCEEAGCPNIGECWN-----KNHATFMILGAICTRACTFCNVATG 108 (329)
Q Consensus 35 ~~~~~kP~Wlk~~~p-~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~-----~gtATFMilG~~CTR~C~FC~V~~G 108 (329)
....++|+|+|+++| .+..|..+++.+++++|+||||||+|||++|||+ ++|||||+||++|||+|+||+|++|
T Consensus 12 ~~~~~~p~W~~~~~p~~~~~~~~~~~~~~~~gl~~~cee~~cpn~~~c~~g~d~~~~~~~~~~lg~~c~~~c~fc~~~~~ 91 (310)
T TIGR00510 12 EELLKKPEWLKIKLPALGTNFAKLKNDVKELGLHTVCEEASCPNLGECWGGKDKSHGTATFLLLGDICTRRCPFCDVAHG 91 (310)
T ss_pred HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 46652531230246522013434333465526511222015775111137643221012443231365224763102246
Q ss_pred -CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf -99888823579999999970775189850544534532589999999999853358689981546234-4689998741
Q gi|254780676|r 109 -KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR-KPHALEKVVS 186 (329)
Q Consensus 109 -~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G-~~~al~~v~~ 186 (329)
+|.++|+.||.++|++++.|+|+|+|||+|+||||+||||+||+.||+.|++.+|+++||+|.|||+| +..+++.+.+
T Consensus 92 ~~p~~pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~dgg~~~~~~~~~~~~~~~p~~~~e~l~~df~g~~~~~~~~~~~ 171 (310)
T TIGR00510 92 RNPLPPDPEEPEKLAETIKDLGLKYVVITSVDRDDLEDGGAGHLAECVEALREKLPNIKIETLVPDFRGRDLKALDILLD 171 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 77898873322568999987305535775122000234534678999999875245413210013201046899998862
Q ss_pred CCCHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 0702332013830002756389-703589999999999708916701404887642068899999999966993997502
Q gi|254780676|r 187 AKPDVFNHNLETVASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 187 A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329)
++||+||||+|||+|||+.||+ +++|.+||.+|+.+++.-|++.||||+|+||||+++||.++|+||+++||+++|+||
T Consensus 172 ~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~g~~~glge~~~~~~~~~~dl~~~g~~~~~~g~ 251 (310)
T TIGR00510 172 APPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKSGLMVGLGETNEEILQTLKDLRDHGVTVLTLGQ 251 (310)
T ss_pred CCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 46134530112334543333013321688999999988750321011220110475247899999989863740565010
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 227861007800023846999999999974962434048300103189999999999
Q gi|254780676|r 266 YLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNN 322 (329)
Q Consensus 266 YL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~ 322 (329)
||||++.|+||.+|+.|++|++|+..|.++||.++++||+|||||||++.|......
T Consensus 252 y~~p~~~h~p~~~y~~p~~fd~~~~~~~~~gf~~~~~gp~~~~~~~~~~~~~~~~~~ 308 (310)
T TIGR00510 252 YLRPSRRHLPVKRYVSPEEFDYWKERALELGFLHAACGPFVRSSYHADELFAEGGLV 308 (310)
T ss_pred HHCCHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHC
T ss_conf 105200125300025740246788777651024432042021001213566642210
No 6
>PRK08508 biotin synthase; Provisional
Probab=99.94 E-value=2.1e-25 Score=200.97 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=158.8
Q ss_pred CCCCCCCCCCCCCCCC-C-CC---C-CCHHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6522353522344678-9-98---8-882357999999997077-51898505445345325899999999998533586
Q gi|254780676|r 93 GAICTRACTFCNVATG-K-PQ---P-LDPQEPENISWAVRSMKL-SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPST 165 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G-~-P~---~-~D~~EP~rvA~av~~l~L-k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~ 165 (329)
-..|...|.||+.... + +- + ++++|-...|+..+..|. +|+.+||-... .|.--..+++.|++||+..|++
T Consensus 14 SG~C~edC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~sg~~~--~~~~~e~v~~~v~~Ik~~~~~l 91 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARANGALGFCLVTAGRGL--DDKKLEYVAKAAKAVKKEVPGL 91 (279)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCE
T ss_conf 37999878644481767999861078999999999999997599768999823688--7544999999999986337993
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHH
Q ss_conf 89981546234468999874107023320138300027563897035899999999997089167014048876420688
Q gi|254780676|r 166 TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNE 245 (329)
Q Consensus 166 ~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eE 245 (329)
.|.+- ..+.. .+.++.+.+||.|.||||+||.+++|+.|+++++|++++++|+.+|++|..++ ||.|+|||||+|+
T Consensus 92 ~~c~s-lG~l~-~e~~~~LkeAGvdrY~hNlETs~~~y~~I~tThty~dRl~tl~~~k~aGl~vC--sGgIiGlGEt~ed 167 (279)
T PRK08508 92 HLIAC-NGMAS-VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHSWEERFQTCLNAKEAGLGLC--SGGIFGLGESWED 167 (279)
T ss_pred EEEEE-CCCCC-HHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEE--CCCEEECCCCHHH
T ss_conf 57611-78579-99999999839712307667676875765899888999999999998199486--7854478999899
Q ss_pred HHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 99999999966993997502227-8-6100780002384699999999997496243404830010
Q gi|254780676|r 246 ILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS 309 (329)
Q Consensus 246 i~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS 309 (329)
+++.+..|++.++|.+.|+-+.. | |+- . ..-.+|++ -++.+|+ |+.+.-.-.+|-+
T Consensus 168 rve~a~~L~eL~~dsVPIN~liPi~GTPL--e-~~~l~~~e--~lr~iAl---~RlilP~a~Ir~a 225 (279)
T PRK08508 168 RISMLKSLASLSPHSTPINFFIPNPALPL--D-TPTLSADE--ALEIVRL---AKEALPNARLMVA 225 (279)
T ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCCC--C-CCCCCHHH--HHHHHHH---HHHHCCCCEEEEC
T ss_conf 99999999838998751567658999988--8-89999999--9999999---9997898765624
No 7
>PRK07094 biotin synthase; Provisional
Probab=99.92 E-value=3.3e-23 Score=185.43 Aligned_cols=192 Identities=19% Similarity=0.284 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 652235352234467899----8888235799999999707751898505445345325899999999998533586899
Q gi|254780676|r 93 GAICTRACTFCNVATGKP----QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE 168 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~P----~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE 168 (329)
-+.|..+|.||+...... -.++++|-...|+..+++|.+.+|++|=. .+......+++.|++||+. +++.|-
T Consensus 46 Sn~C~edC~yC~~~~~n~~~~rY~Ls~eeI~~~A~~a~~~G~~~~~lqsG~---~~~~~~e~~~~ii~~Ik~~-~~l~i~ 121 (323)
T PRK07094 46 SNYCRRNCLYCGLRRSNKNIKRYRLSPEEILECAKKAYELGYGTIVLQSGE---DPYYTDEKIADIIKEIKKE-LDVAIT 121 (323)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC---CCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 689999993478766789977437999999999999998699889996489---9886699999999998605-994599
Q ss_pred EECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHH
Q ss_conf 8154623446899987410702332013830-0027563897035899999999997089167014048876-4206889
Q gi|254780676|r 169 VLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEI 246 (329)
Q Consensus 169 vLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi 246 (329)
+-+ .++ ..+.++.+.+||.|.|+||+||. +++|+.|+|+++|++.+++|+.+|++| +.+.||+|+|| |||+|++
T Consensus 122 lSl-G~l-~~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G--~~v~sG~iiGlpGET~edr 197 (323)
T PRK07094 122 LSL-GER-SYEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDLKELG--YEVGSGFMVGLPGQTLEDL 197 (323)
T ss_pred EEC-CCC-CHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHH
T ss_conf 757-879-999999999859774412456569898677589999899999999999839--8104302779899999999
Q ss_pred HHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999996699399750222786100780002384699999999997
Q gi|254780676|r 247 LQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 247 ~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
++.+..|++.++|.+.||-+.. -+ .-|....-.+...+.++-+|.-
T Consensus 198 ~~~l~~LreL~~~~v~i~~fiP-~~-gTPl~~~~~~~~~~~lr~iAl~ 243 (323)
T PRK07094 198 ADDILFLKELDLDMIGIGPFIP-HP-DTPLADEKGGSLELTLKVLALA 243 (323)
T ss_pred HHHHHHHHHCCCCEECCCCCCC-CC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999837998867725517-99-9998899997999999999999
No 8
>PRK06256 biotin synthase; Validated
Probab=99.92 E-value=3.1e-23 Score=185.65 Aligned_cols=192 Identities=23% Similarity=0.277 Sum_probs=148.8
Q ss_pred ECC-CCCCCCCCCCCCC----CCC-CC-CCHHHHHHHHHHHHHHCCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 665-2235352234467----899-88-88235799999999707751898-5054453453258999999999985335
Q gi|254780676|r 92 LGA-ICTRACTFCNVAT----GKP-QP-LDPQEPENISWAVRSMKLSHVVI-TSVDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 92 lG~-~CTR~C~FC~V~~----G~P-~~-~D~~EP~rvA~av~~l~Lk~vVi-TSV~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
.-+ .|+.+|.||+-.. +.+ .+ ++++|-..-|+..+..|...+.| ||-. ++.+..-..+.+.|++||+..
T Consensus 62 ~kng~C~edC~yCaqs~~~~~~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvtsg~--~~~~~~~e~v~~~i~~Ik~~~- 138 (325)
T PRK06256 62 LKSGLCPEDCGYCSQSAGSSSPIYRYAWLDIEEIVEAAKEAIENGAGRFCIVASGR--GPSGREVDQVIEAVKAIKEET- 138 (325)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHHHHHHCC-
T ss_conf 61898899996298907678997412789999999999999986998899986045--897678999999999986228-
Q ss_pred CCEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC
Q ss_conf 86899815-46234468999874107023320138300027563897035899999999997089167014048876420
Q gi|254780676|r 164 STTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET 242 (329)
Q Consensus 164 ~~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt 242 (329)
.+|+.+ ..+. ..+.++.+.+||.|.|+||+||.+++|+.|+|+++|++.|++++.++++|. .+.||+|+|||||
T Consensus 139 --~l~i~~slG~l-~~e~~~~LkeAGvd~y~~nlETs~~~f~~i~~tht~~~Rl~ti~~a~~aGi--~vcsG~i~GlGEt 213 (325)
T PRK06256 139 --DLEICACLGLL-TEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRVDTCEMVKAAGI--EPCSGGIIGMGET 213 (325)
T ss_pred --CEEEEEECCCC-CHHHHHHHHHCCCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCEEECCCCC
T ss_conf --93688734889-999999999869988866644068763886899889999999999998599--6466437668999
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6889999999996699399750222786100-780002384699999999997
Q gi|254780676|r 243 RNEILQLMDDLRTADVDFLTMGQYLQPTRKH-HKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 243 ~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h-~pV~ryv~P~eF~~~~~~a~~ 294 (329)
++++++.+..|++.++|.+.|+-+ .|-+.- +.-....+|+++ ++-+|.-
T Consensus 214 ~edrve~l~~Lr~l~~~sipin~l-~P~~gTpl~~~~~l~~~e~--lr~iAi~ 263 (325)
T PRK06256 214 LEDRAEHAFFLKELDADSIPINFL-NPIKGTPLEDLPELTPLEC--LKTIAIF 263 (325)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCC-EECCCCCCCCCCCCCHHHH--HHHHHHH
T ss_conf 899999999997199988954670-1069986688999899999--9999999
No 9
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.91 E-value=4.4e-23 Score=184.62 Aligned_cols=208 Identities=22% Similarity=0.295 Sum_probs=158.7
Q ss_pred EEEEECCC-CCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99986652-2353522344678998------888235799999999707-751898505445345325899999999998
Q gi|254780676|r 88 TFMILGAI-CTRACTFCNVATGKPQ------PLDPQEPENISWAVRSMK-LSHVVITSVDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 88 TFMilG~~-CTR~C~FC~V~~G~P~------~~D~~EP~rvA~av~~l~-Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir 159 (329)
+++=..+. |...|.||+-...... -.+.+|-..-|++++..| .+++.++|.- | .+..-.++++.|++|+
T Consensus 52 ~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr-~--~~~~~~~i~~~v~~Vk 128 (335)
T COG0502 52 TLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGR-G--PGRDMEEVVEAIKAVK 128 (335)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECC-C--CCCCHHHHHHHHHHHH
T ss_conf 888733488898898760010476798233128999999999999974995079987316-7--7744899999999999
Q ss_pred HHCCCCEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 533586899815-4623446899987410702332013830002756389703589999999999708916701404887
Q gi|254780676|r 160 ESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 160 ~~~P~~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
+... +|+.. .. .=+.++++.+.+||.|.||||+||++++|+.|+|+++|+.++++|+.+|++| +.++||+|+|
T Consensus 129 ~~~~---le~c~slG-~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~G--i~vcsGgI~G 202 (335)
T COG0502 129 EELG---LEVCASLG-MLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAG--IEVCSGGIVG 202 (335)
T ss_pred HHCC---CHHHHCCC-CCCHHHHHHHHHCCHHHEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCC--CCCCCCEEEC
T ss_conf 8469---28640258-7999999999971811330355569788756578988889999999999809--8504512761
Q ss_pred EEECHHHHHHHHHHHHHCC-CCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 6420688999999999669-9399750222786100780002384699999999997496243404830010
Q gi|254780676|r 239 LGETRNEILQLMDDLRTAD-VDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS 309 (329)
Q Consensus 239 LGEt~eEi~e~l~DLr~~g-vdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS 309 (329)
||||.+|.++.+..|++.+ .|.++|+.... -+. -|...--..+.|+.++-+|.-. |.+.-| .||.|
T Consensus 203 lGEs~eDri~~l~~L~~l~~pdsVPIn~l~P-~~G-TPle~~~~~~~~e~lk~IA~~R-i~~P~~--~Ir~s 269 (335)
T COG0502 203 LGETVEDRAELLLELANLPTPDSVPINFLNP-IPG-TPLENAKPLDPFEFLKTIAVAR-IIMPKS--MIRLS 269 (335)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECC-CCC-CCCCCCCCCCHHHHHHHHHHHH-HHCCCC--EEECC
T ss_conf 8998889999999997189988542321037-999-8666589999899999999999-977864--56725
No 10
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=99.87 E-value=3e-22 Score=178.66 Aligned_cols=211 Identities=20% Similarity=0.306 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCCCCCCC----C-C-----------CCHH--------------HHHHHHHHHHHH-C---------CCEE
Q ss_conf 52235352234467899----8-8-----------8823--------------579999999970-7---------7518
Q gi|254780676|r 94 AICTRACTFCNVATGKP----Q-P-----------LDPQ--------------EPENISWAVRSM-K---------LSHV 133 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P----~-~-----------~D~~--------------EP~rvA~av~~l-~---------Lk~v 133 (329)
.-|.-.|.||+-..-.+ - | .+.+ |-..=|++.+.. . .+|+
T Consensus 40 G~C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~DeCskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFC 119 (350)
T TIGR00433 40 GGCPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDECSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFC 119 (350)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEE
T ss_conf 85766776788555266886224566741789988767654322221111113789999999970878888530350146
Q ss_pred EEECCCCCCCCCCH--HHHHHHHHHHHHHHCCC--CEEEEECCCCCC--CHHHHHHHHHCCCHHHHHCCC-CCCCCCCCC
Q ss_conf 98505445345325--89999999999853358--689981546234--468999874107023320138-300027563
Q gi|254780676|r 134 VITSVDRDDLDDGG--AQHFAEVISAIRESAPS--TTIEVLTPDFLR--KPHALEKVVSAKPDVFNHNLE-TVASNYLMV 206 (329)
Q Consensus 134 ViTSV~RDDL~DgG--A~hfa~~I~~Ir~~~P~--~~IEvLiPDf~G--~~~al~~v~~A~pdV~nHNiE-TV~rLy~~V 206 (329)
..||== ++.|.- -.-|.+.|.+|.+..-. +.+|+-.- .| +.+.++.|.|||.|+|||||| |++++|+.|
T Consensus 120 lvasGR--~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C~~--LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I 195 (350)
T TIGR00433 120 LVASGR--GPKDRESKDREFIEIVEAVVKIVEEEELGLKTCAT--LGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKI 195 (350)
T ss_pred EEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHC--CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf 554178--88877742202889999999997520037122320--37768899998886388611167367878766873
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHC--CCCEEECCHHCC-C-CCCCCCCCC--CC
Q ss_conf 89703589999999999708916701404887642068899999999966--993997502227-8-610078000--23
Q gi|254780676|r 207 RPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTA--DVDFLTMGQYLQ-P-TRKHHKVES--FV 280 (329)
Q Consensus 207 Rp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~--gvdilTiGQYL~-P-s~~h~pV~r--yv 280 (329)
.++|+|+++|++++.||++|..+| ||.|+|||||++|.++++..|++. ++|-+.|.+... | |+..=.+.. -=
T Consensus 196 ~sThty~DR~~T~~~~k~aGl~~C--sGGI~GlgEt~~DrI~l~~~L~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~ 273 (350)
T TIGR00433 196 ISTHTYDDRVDTVKNAKEAGLKVC--SGGILGLGETWEDRIGLALALANLSPEPESVPINFLVKIEGTPAYEKLADGEVK 273 (350)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCC--CCCEECCCCCHHHHHHHHHHHHCCCCCCCEECCCCEECCCCCCCHHHHCCCCCC
T ss_conf 432307767999999997388724--462345898889999999997527767870111320268888534431588867
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 84699999999997496243404830010318999
Q gi|254780676|r 281 TPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDD 315 (329)
Q Consensus 281 ~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~ 315 (329)
+-+-++.+|.+|+.. |-...+ .||-| ||+.
T Consensus 274 ~L~~~~~Lk~iA~ar-i~mP~~--~iRla--gGR~ 303 (350)
T TIGR00433 274 KLSADDALKTIALAR-IIMPKA--EIRLA--GGRE 303 (350)
T ss_pred CCCHHHHHHHHHHHH-HHCCCC--EEEEE--CCEE
T ss_conf 338899999999988-654311--00100--2514
No 11
>PRK06267 hypothetical protein; Provisional
Probab=99.81 E-value=5e-18 Score=148.90 Aligned_cols=189 Identities=18% Similarity=0.199 Sum_probs=141.9
Q ss_pred EEEECCCCCCC--CCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99866522353--522344678998-------888235799999999707751898505445345325899999999998
Q gi|254780676|r 89 FMILGAICTRA--CTFCNVATGKPQ-------PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 89 FMilG~~CTR~--C~FC~V~~G~P~-------~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir 159 (329)
.....+.|.++ |.||...+.+.. -..++|-..-|+..+++|.+.+|++|-- | .....+.+.|+.||
T Consensus 30 lIefsN~C~~~~dC~YCg~sa~~~k~k~p~ryR~s~EeIl~~A~~~~~~G~kt~vLqsGe-d----yt~eel~~ii~~IK 104 (324)
T PRK06267 30 ALFLGWYCNLGDPCKFCFMSTQKDKIKDPLKARRRPESILAEAIIMKRIGWKLEFISGGY-G----YTTEEINDIIEMIS 104 (324)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCC-C----CCHHHHHHHHHHHH
T ss_conf 888825358999987687777777776466552899999999999998399979980487-7----99899999999998
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 5335868998154623446899987410702332013830-002756389703589999999999708916701404887
Q gi|254780676|r 160 ESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 160 ~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
+. +++.|-+-+. . ...+.......||.+ ||+||. +.||+.|+|+++|++++++|+.+|++|.. +.||+|+|
T Consensus 105 ~i-~~~avtLSlG-~-~s~e~~~~~~~aG~~---~~lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e--~gsG~ivG 176 (324)
T PRK06267 105 YI-QGSKQYLNVG-I-IDFENLNLNEIEGVV---GAVETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLK--TGITIILG 176 (324)
T ss_pred HH-CCCCEEEECC-C-CCHHHHHHHHHCCHH---HHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEEEE
T ss_conf 60-1871697158-7-879999777663701---424147988870279999889999999999983983--20046873
Q ss_pred EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 642068899999999966993997502227861007800023846999999999
Q gi|254780676|r 239 LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 (329)
Q Consensus 239 LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329)
||||.|++.+.+.-|++.++|.+.||-+..--..-+.=..-.+|++.. +-+|
T Consensus 177 lGET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p~~t~~e~l--k~iA 228 (324)
T PRK06267 177 LGETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKPSPTTLEYM--NWVS 228 (324)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH--HHHH
T ss_conf 798899999999999976999763258458999988999998999999--9999
No 12
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.53 E-value=1.6e-12 Score=109.97 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=132.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9998665223535223446789--98888235799999999707751898505--4453453258999999999985335
Q gi|254780676|r 88 TFMILGAICTRACTFCNVATGK--PQPLDPQEPENISWAVRSMKLSHVVITSV--DRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~~G~--P~~~D~~EP~rvA~av~~l~Lk~vViTSV--~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
.+++...-|..+|.||++.... ....++++-.+..+..++.+.++..+.++ .-|+.......++.+.+++|++.++
T Consensus 3 ~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 82 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILG 82 (216)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999878198484298175889645759999999999999708976530011002468988899999999999998514
Q ss_pred C---CEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 8---6899815-462344689998741070233201383-0002756389703589999999999708916701404887
Q gi|254780676|r 164 S---TTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 164 ~---~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
. ..+.+-+ |+. -+.+.++.+.++|.+.+..++|| .+++...++.+.++++.++.++.++++|. +...+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~-~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~-~~~~~~~i~G 160 (216)
T smart00729 83 LADDVEITIETRPGT-LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGP-IKVSTDLIVG 160 (216)
T ss_pred CCCCEEEEEECCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CEEEEEEEEC
T ss_conf 356269999706021-58999999998499866667355078999871799999999999999998589-3687757867
Q ss_pred E-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCC
Q ss_conf 6-42068899999999966993997502227-8-610078000
Q gi|254780676|r 239 L-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVES 278 (329)
Q Consensus 239 L-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~r 278 (329)
| |||+|++.++++.+.+.++|.+.+.++.. | |+.+....+
T Consensus 161 lP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~ 203 (216)
T smart00729 161 LPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR 203 (216)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC
T ss_conf 9999999999999999946919899874875699846650162
No 13
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.51 E-value=1.7e-12 Score=109.80 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=164.4
Q ss_pred CCCEEECCCCCCCHHHHHCCCCEEEEE-----ECCCCCCCCCCCCCCCC--CCC--CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 982365257887876750897269998-----66522353522344678--998--888235799999999707751898
Q gi|254780676|r 65 NLTTVCEEAGCPNIGECWNKNHATFMI-----LGAICTRACTFCNVATG--KPQ--PLDPQEPENISWAVRSMKLSHVVI 135 (329)
Q Consensus 65 ~L~TVCeeA~CPNi~ECw~~gtATFMi-----lG~~CTR~C~FC~V~~G--~P~--~~D~~EP~rvA~av~~l~Lk~vVi 135 (329)
.|+.+|+.|.==+ -..| +..+||-+ +-++|.-.|.||+-... .|. -++++|-...|+.....|.+=+.+
T Consensus 15 dl~~L~~~A~~vR-~~~~-G~~Vtf~~n~~In~TNiC~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~G~~Ei~~ 92 (343)
T TIGR03551 15 NLFELFRLADELR-RDIV-GDTVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCI 92 (343)
T ss_pred CHHHHHHHHHHHH-HHHC-CCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999-9877-9948996500625526874789767786689998660079999999999999769968998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------CC--CHHHHHHHHHCCCHHHHHC-CCC-CCCCCC
Q ss_conf 505445345325899999999998533586899815462-------34--4689998741070233201-383-000275
Q gi|254780676|r 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF-------LR--KPHALEKVVSAKPDVFNHN-LET-VASNYL 204 (329)
Q Consensus 136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf-------~G--~~~al~~v~~A~pdV~nHN-iET-V~rLy~ 204 (329)
++=. -||-..+.|.+.+++||+..|++.|..++|-- .| ..+.|+.+.+||.+.+-++ -|+ +++..+
T Consensus 93 ~gG~---~Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~ 169 (343)
T TIGR03551 93 QGGI---HPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRK 169 (343)
T ss_pred ECCC---CCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHH
T ss_conf 2586---8788888999999999874883010227899999999865999999999999758776788651321401241
Q ss_pred CCCCC-CHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEE----ECCHHCCCCCCCC----C
Q ss_conf 63897-0358999999999970891670140488764206889999999996699399----7502227861007----8
Q gi|254780676|r 205 MVRPG-ARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFL----TMGQYLQPTRKHH----K 275 (329)
Q Consensus 205 ~VRp~-a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdil----TiGQYL~Ps~~h~----p 275 (329)
.++|. ...++-|++++.|.+.| |.|-||||+|.|||.+|+++.|.-||+...+.- -|=|=.||-..-+ .
T Consensus 170 ~i~P~K~~~~~wl~~~~~Ah~lG--i~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~ 247 (343)
T TIGR03551 170 VICPDKLSTAEWIEIIKTAHKLG--IPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGM 247 (343)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCC
T ss_conf 46969899999999999999859--9720223427889999999999999986201388269981365667880444156
Q ss_pred CCCCCCHHHHHHHHHHHHHC----CC-CEEEC
Q ss_conf 00023846999999999974----96-24340
Q gi|254780676|r 276 VESFVTPQDFKSYETIAYSK----GF-LMVSA 302 (329)
Q Consensus 276 V~ryv~P~eF~~~~~~a~~~----Gf-~~V~S 302 (329)
+.. .|...+.++.+|.+. +| .++.+
T Consensus 248 ~~~--~~~~~e~l~~iAvaRl~l~~~i~~Iqa 277 (343)
T TIGR03551 248 ARP--GPTGREDLKVHAIARILLHGLIDNIQA 277 (343)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 678--985799999999999970477654222
No 14
>KOG2900 consensus
Probab=99.51 E-value=3e-14 Score=122.20 Aligned_cols=175 Identities=22% Similarity=0.355 Sum_probs=129.0
Q ss_pred EEEE-EECCCCCCCCCCCCCC----CCCC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6999-8665223535223446----7899--8888235799999999707751898505445345325899999999998
Q gi|254780676|r 87 ATFM-ILGAICTRACTFCNVA----TGKP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 87 ATFM-ilG~~CTR~C~FC~V~----~G~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir 159 (329)
-|.| |--.-|+..|.||+.. ||-- .....+|-..-|+-.++-|-.---+-+-=||-. |--.-|.+..+-|+
T Consensus 84 CTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~--GRk~~fk~IlE~ik 161 (380)
T KOG2900 84 CTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMK--GRKSAFKRILEMIK 161 (380)
T ss_pred EEEEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHC--CCHHHHHHHHHHHH
T ss_conf 5788750588651221101003465440278774099999999998863886143115655311--41458999999999
Q ss_pred HHCCCCEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 533586899815-4623446899987410702332013830002756389703589999999999708916701404887
Q gi|254780676|r 160 ESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 160 ~~~P~~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
+.+ +...||-+ -.+. +.+..+.+.+||...|||||.|.+..|+.|-++.+|+++|++|+.++++|.++ +||.|+|
T Consensus 162 evr-~MgmEvCvTLGMv-~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~aGikv--CsGGIlG 237 (380)
T KOG2900 162 EVR-DMGMEVCVTLGMV-DQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAGIKV--CSGGILG 237 (380)
T ss_pred HHH-CCCCEEEEEECCC-CHHHHHHHHHCCCEECCCCCCCHHHHHCCCCEECCHHHHHHHHHHHHHHCCEE--CCCCCCC
T ss_conf 987-2881004431441-38889988854643003676424666400123022677888888898726333--1465320
Q ss_pred EEECHHHHHHHHHHHHHCC--CCEEECCHHC
Q ss_conf 6420688999999999669--9399750222
Q gi|254780676|r 239 LGETRNEILQLMDDLRTAD--VDFLTMGQYL 267 (329)
Q Consensus 239 LGEt~eEi~e~l~DLr~~g--vdilTiGQYL 267 (329)
|||.+++.+-.+..|.... -+-+.|.-.+
T Consensus 238 LGE~e~DriGlihtLatmp~HPESvPiN~Lv 268 (380)
T KOG2900 238 LGESEDDRIGLIHTLATMPPHPESVPINRLV 268 (380)
T ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCEEE
T ss_conf 4665556034443101489997666511477
No 15
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.48 E-value=4e-12 Score=107.19 Aligned_cols=233 Identities=17% Similarity=0.187 Sum_probs=165.2
Q ss_pred CCEEECCCCCCCHHHHHCCCCEEEEEE-----CCCCCCCCCCCCCCCC--CCC--CCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 823652578878767508972699986-----6522353522344678--998--8882357999999997077518985
Q gi|254780676|r 66 LTTVCEEAGCPNIGECWNKNHATFMIL-----GAICTRACTFCNVATG--KPQ--PLDPQEPENISWAVRSMKLSHVVIT 136 (329)
Q Consensus 66 L~TVCeeA~CPNi~ECw~~gtATFMil-----G~~CTR~C~FC~V~~G--~P~--~~D~~EP~rvA~av~~l~Lk~vViT 136 (329)
|+++|+-|.==. -+.++ .++||.+- -++|+-.|+||+-... .|. -++++|-...|+.....|.+-|.++
T Consensus 37 l~~L~~~A~~vR-~~~~G-d~Vtfv~n~~In~TNiC~~~C~fCaF~r~p~~~~ay~ls~eEi~~~~~~a~~~G~tEv~~~ 114 (375)
T PRK07360 37 IFEILELADRLR-AEQVG-DTVTYVVNRNINFTNICEGHCGFCAFRRDKGDPGAFWLDIEEILEKAAEAVKAGATEVCIQ 114 (375)
T ss_pred HHHHHHHHHHHH-HHHCC-CEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999999999-98669-9699982526656179870898273407889976602789999999999986588089976
Q ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHHCCCCEEEEECCC-------C--CCCHHHHHHHHHCCCHHHHH-CCC-CCCCCC
Q ss_conf 054453453--2589999999999853358689981546-------2--34468999874107023320-138-300027
Q gi|254780676|r 137 SVDRDDLDD--GGAQHFAEVISAIRESAPSTTIEVLTPD-------F--LRKPHALEKVVSAKPDVFNH-NLE-TVASNY 203 (329)
Q Consensus 137 SV~RDDL~D--gGA~hfa~~I~~Ir~~~P~~~IEvLiPD-------f--~G~~~al~~v~~A~pdV~nH-NiE-TV~rLy 203 (329)
+=..-||+- ...+.|.+.+++||+..|++.|-.++|- - ..-.+.|+.+.+||.+.+-+ +-| .+++..
T Consensus 115 gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr 194 (375)
T PRK07360 115 GGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHAFSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVR 194 (375)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 88783445464518999999999998689855640899999998866499889999999976987588876210345566
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE----EECCHHCCCCCCCCCCCC
Q ss_conf 5638970-35899999999997089167014048876420688999999999669939----975022278610078000
Q gi|254780676|r 204 LMVRPGA-RYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF----LTMGQYLQPTRKHHKVES 278 (329)
Q Consensus 204 ~~VRp~a-~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi----lTiGQYL~Ps~~h~pV~r 278 (329)
..++|.- +=++-|++++.|.+.| +.|-||||+|.|||.+|+++.|..||++..+. --|-|=.||-...+.-.+
T Consensus 195 ~~i~P~K~~~~~wl~v~~~Ah~lG--i~ttatmL~Gh~Et~eerv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~ 272 (375)
T PRK07360 195 RIICPEKITTAEWIEIVKTAHKLG--LPTTSTMMYGHIETPEHRIDHLSILREIQKETGGITEFIPLPFVHENAPLYERG 272 (375)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 465989889999999999999829--970100261898999999999999998887449846997114358998500015
Q ss_pred CC--CHHHHHHHHHHHHHC----CC-CEEEC
Q ss_conf 23--846999999999974----96-24340
Q gi|254780676|r 279 FV--TPQDFKSYETIAYSK----GF-LMVSA 302 (329)
Q Consensus 279 yv--~P~eF~~~~~~a~~~----Gf-~~V~S 302 (329)
.+ .+...+.++.+|.+. +| .++.+
T Consensus 273 ~~~~~~~~~e~lk~~AvaRl~Ldn~i~~Iqa 303 (375)
T PRK07360 273 RVKRGAPGLEDLKLYAVSRIFLGNWIKNIQP 303 (375)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 6788886698999999999983388876577
No 16
>PRK08444 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-11 Score=101.98 Aligned_cols=221 Identities=21% Similarity=0.248 Sum_probs=164.0
Q ss_pred CCCCEEECCCCCCCHHHHHCCCCEEEEE-----ECCCCCCCCCCCCCCC--CCCCC--CCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 4982365257887876750897269998-----6652235352234467--89988--8823579999999970775189
Q gi|254780676|r 64 RNLTTVCEEAGCPNIGECWNKNHATFMI-----LGAICTRACTFCNVAT--GKPQP--LDPQEPENISWAVRSMKLSHVV 134 (329)
Q Consensus 64 ~~L~TVCeeA~CPNi~ECw~~gtATFMi-----lG~~CTR~C~FC~V~~--G~P~~--~D~~EP~rvA~av~~l~Lk~vV 134 (329)
..|+.+++-|.-=..- .. +..+||-+ .-++|.-+|+||+-.. +.|.+ ++++|-.+.++.....|.+-+.
T Consensus 24 ~dl~~L~~~Ad~~R~~-~~-G~~vtfv~n~~IN~TNiC~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~ea~~~G~tev~ 101 (353)
T PRK08444 24 LDLFTLGKYADRKRTK-LH-GKKVYFNINRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKESVKRGIKEVH 101 (353)
T ss_pred CCHHHHHHHHHHHHHH-HC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999999999998-77-991699820574566445688856756168999987666999999999999975987899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC---------CCCHHHHHHHHHCCCHHHHHC-CC-CCCCCC
Q ss_conf 8505445345325899999999998533586899815462---------344689998741070233201-38-300027
Q gi|254780676|r 135 ITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF---------LRKPHALEKVVSAKPDVFNHN-LE-TVASNY 203 (329)
Q Consensus 135 iTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf---------~G~~~al~~v~~A~pdV~nHN-iE-TV~rLy 203 (329)
|.+=-. ||.+-+.|.+.+++||+..|++.|-.++|.= ..-.+.|+++.+||.|-+-.+ -| .+++.-
T Consensus 102 i~GG~~---P~~~~eyY~~l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR 178 (353)
T PRK08444 102 IVSAHN---PNYGYQWYLEIFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVR 178 (353)
T ss_pred EECCCC---CCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHH
T ss_conf 814759---89975889999999998588504771778999999998099999999999981987578987200377789
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC------EEECCHHCCCCCCCCCC
Q ss_conf 56389-703589999999999708916701404887642068899999999966993------99750222786100780
Q gi|254780676|r 204 LMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD------FLTMGQYLQPTRKHHKV 276 (329)
Q Consensus 204 ~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd------ilTiGQYL~Ps~~h~pV 276 (329)
..|+| ..+-++=|++.+.|.+.| +.|-+++|.|.+||.+|+++.|..||++.-+ ++.+ =.||....+.+
T Consensus 179 ~~I~p~K~~~~~Wl~i~~~AH~lG--i~ttaTmmyGhvEt~e~rv~HL~~lR~lQd~tgGF~~FIPl--~f~~~~t~l~~ 254 (353)
T PRK08444 179 KKICKGKVSSERWLEIHKYWHKKG--KQSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPL--VYQRENNYLKV 254 (353)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCCCCC
T ss_conf 761899899999999999999829--96641467788799999999999999836557983589765--65789985777
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q ss_conf 0023846999999999974
Q gi|254780676|r 277 ESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 277 ~ryv~P~eF~~~~~~a~~~ 295 (329)
..-.++. +.++.+|.+.
T Consensus 255 ~~~~t~~--e~Lr~~AisR 271 (353)
T PRK08444 255 EKFPSSQ--EILKTIAISR 271 (353)
T ss_pred CCCCCHH--HHHHHHHHHH
T ss_conf 8999989--9999999999
No 17
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.32 E-value=6.4e-11 Score=98.72 Aligned_cols=170 Identities=19% Similarity=0.287 Sum_probs=133.8
Q ss_pred ECCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 6652235352234467899----888823579999999970775189850544534532589999999999853358689
Q gi|254780676|r 92 LGAICTRACTFCNVATGKP----QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTI 167 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~P----~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~I 167 (329)
...-|..+|.||....... ......+....+...+.++.+++.+++-+-... .++.+.++.+++..+...+
T Consensus 3 ~srGC~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~l~~~~~~~~~~~i 77 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLY-----PELAELLRRLKKELPGFEI 77 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCCHHHHHHHHCCCCCEE
T ss_conf 16373856987998754798756678899999999999875986999724676666-----5321013545530687179
Q ss_pred EEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHH
Q ss_conf 98154623446899987410702332013830-00275638-970358999999999970891670140488764-2068
Q gi|254780676|r 168 EVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVR-PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRN 244 (329)
Q Consensus 168 EvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VR-p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~e 244 (329)
-+.+..+.-+.+.++.+.+++...+++++|+. ++.+..++ ...++++.++.++.+++.+ +.+.+++|+|++ ||.+
T Consensus 78 ~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~i~G~p~et~~ 155 (204)
T cd01335 78 SIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAG--LGLSTTLLVGLGDEDEE 155 (204)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CEEEEEEEECCCCCCHH
T ss_conf 9983365476999877540375422224356899999998488997599999999998679--98999999827999999
Q ss_pred HHHHHHHHHHHCC-CCEEECCHHCC
Q ss_conf 8999999999669-93997502227
Q gi|254780676|r 245 EILQLMDDLRTAD-VDFLTMGQYLQ 268 (329)
Q Consensus 245 Ei~e~l~DLr~~g-vdilTiGQYL~ 268 (329)
++.+++..+.+.. ++.+.+..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p 180 (204)
T cd01335 156 DDLEELELLAEFRSPDRVSLFRLLP 180 (204)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 9999999998518998898987662
No 18
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.26 E-value=5e-10 Score=92.42 Aligned_cols=201 Identities=20% Similarity=0.257 Sum_probs=153.8
Q ss_pred EEEEECCCCCCCCCCCCCCCC--CC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999866522353522344678--99--88882357999999997077518985054453453258999999999985335
Q gi|254780676|r 88 TFMILGAICTRACTFCNVATG--KP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~~G--~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
.|+-+.++|.-+|.||+-... .| -.++++|-.+.+++..++|.+.+-|++=.. |+.+-.-|...++.||+..|
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~---p~~~~~y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH---PELSLEYYEELFRTIKEEFP 137 (370)
T ss_pred ECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCHHHHHHHHHHHHHHCC
T ss_conf 257853233179972623457888655316999999999999875986999805768---77436799999999988573
Q ss_pred CCEEEEECCC-CC--------CCHHHHHHHHHCCCHHHHH-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 8689981546-23--------4468999874107023320-----13830002756389703589999999999708916
Q gi|254780676|r 164 STTIEVLTPD-FL--------RKPHALEKVVSAKPDVFNH-----NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 164 ~~~IEvLiPD-f~--------G~~~al~~v~~A~pdV~nH-----NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
++.|-.|.|- |. ...+.++++.+||.|-+-- +.|+|++.-. .+..+++..|++++.|.++| |
T Consensus 138 ~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~~~Ah~lG--I 213 (370)
T COG1060 138 DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIHERAHRLG--I 213 (370)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHC--CCCCCHHHHHHHHHHHHHCC--C
T ss_conf 0343016788867987436888999999999769876747541141677998637--98899999999999999769--9
Q ss_pred EECCCEEEEEEECHHHHHHHHHHHHH----CCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 70140488764206889999999996----6993997502227861007800023846999999999974
Q gi|254780676|r 230 FTKSGIMLGLGETRNEILQLMDDLRT----ADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 230 ~TKSGlMvGLGEt~eEi~e~l~DLr~----~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329)
.+-+++|+|-||+.+|+++.|.-||+ .|.-.--|=|=+||-..--+-..--.+.-++.++.+|++.
T Consensus 214 ~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaR 283 (370)
T COG1060 214 PTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALAR 283 (370)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8420347873288899999999999999985895799805545788876666789899899999999999
No 19
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.23 E-value=3.5e-10 Score=93.51 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=133.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 99866522353522344678998--8882357999999997077518985054453453258-----9999999999853
Q gi|254780676|r 89 FMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRES 161 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~ 161 (329)
|+-+-++|.-+|+||+-.++.+. .++++|-...|+..+..|.+=+-|++=.+-|+.-.-. ..|..++..++..
T Consensus 15 ~In~TNiC~~~C~fCaF~~~~~~a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRPDPGEASLLSPEEVREILERGQDAGCTEALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDL 94 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 61677540268825867468875687799999999999997698399980578866368999999970755077889998
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHH--CCCHHHHHCCCC-CCCCCCCC---CCCCHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 358689981546234---4689998741--070233201383-00027563---89703589999999999708916701
Q gi|254780676|r 162 APSTTIEVLTPDFLR---KPHALEKVVS--AKPDVFNHNLET-VASNYLMV---RPGARYFHSLRLLQRVKELDPLIFTK 232 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G---~~~al~~v~~--A~pdV~nHNiET-V~rLy~~V---Rp~a~Y~rSL~vL~~aK~~~~~i~TK 232 (329)
++-+.-+-|.|-... ..+.|+.+.+ |+... .+|+ .++|...+ +|.-..+..|++++.|.+.| |.|-
T Consensus 95 ~~~~le~gllph~n~G~ls~~el~~Lk~v~asmG~---mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~Ah~lg--IptT 169 (336)
T PRK06245 95 CELALETGLLPHTNAGILSRAEMEALKPVNASMGL---MLEQTSPRLLETVHRHSPGKDPELRLETIEWAGELK--IPFT 169 (336)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC--CCCE
T ss_conf 58887636552236676789999987535976675---712356898876304489878899999999999839--9722
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCC---E-EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-CCCEEECCC
Q ss_conf 404887642068899999999966993---9-9750222786100780002384699999999997---4-962434048
Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVD---F-LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS---K-GFLMVSASP 304 (329)
Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvd---i-lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~---~-Gf~~V~SgP 304 (329)
||||+|.|||.+|.++.|.-||++.=. | --|=|=.+|-.. .+-...-.|...+.++.+|.+ + ++..+...|
T Consensus 170 atmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~-t~m~~~~~~~~~e~l~~iAvARiiL~~~i~IQapp 248 (336)
T PRK06245 170 TGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPG-IPMENHPEPSPEEMPRVVALARLILPPDISIQVPP 248 (336)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 02452066999999999999999886349757995068778987-53346999799999999999999669985797698
No 20
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.16 E-value=9.2e-10 Score=90.52 Aligned_cols=204 Identities=19% Similarity=0.262 Sum_probs=129.8
Q ss_pred EEECCCCCCCCCCCCCCC--CCCC--CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC---------CH----HHHHH
Q ss_conf 986652235352234467--8998--8882357999999997077518985054453453---------25----89999
Q gi|254780676|r 90 MILGAICTRACTFCNVAT--GKPQ--PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDD---------GG----AQHFA 152 (329)
Q Consensus 90 MilG~~CTR~C~FC~V~~--G~P~--~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D---------gG----A~hfa 152 (329)
.=.-++|.-+|+||+-.. |.|. .++++|-.+.|+.....|.+=|-|++=.+-|++= .| -.++.
T Consensus 8 In~TNiC~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~~~~~~~~~~l~~~~~~~~~~~~~ 87 (322)
T TIGR03550 8 IPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLR 87 (322)
T ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 68872031769678851689998877479999999999999779879996488680034999999999848861789999
Q ss_pred HH-HHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHH------CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99-999985--33586899815462344689998741------0702332013830002756389703589999999999
Q gi|254780676|r 153 EV-ISAIRE--SAPSTTIEVLTPDFLRKPHALEKVVS------AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVK 223 (329)
Q Consensus 153 ~~-I~~Ir~--~~P~~~IEvLiPDf~G~~~al~~v~~------A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK 223 (329)
.. ...+.+ ..|.+...+++. +.|..+.+ +.|+..++.+. +..-..++|.-...+.|++++.|.
T Consensus 88 ~~~~~~~~~~~~~p~~~~g~~t~------eel~~Lk~~~aglg~~~e~~ae~l~--~~vr~~~~P~K~~~~~l~i~~~Ah 159 (322)
T TIGR03550 88 ELCELALEETGLLPHTNPGVMSR------DELARLKPVNASMGLMLETTSERLC--KGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCH------HHHHHHHHCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999998633565447676889------9999876318626667888887532--223567799988799999999999
Q ss_pred HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC---E-EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-
Q ss_conf 708916701404887642068899999999966993---9-9750222786100780002384699999999997---4-
Q gi|254780676|r 224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD---F-LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS---K- 295 (329)
Q Consensus 224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd---i-lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~---~- 295 (329)
+.| +.|-++||.|.|||.+|+++.|.-||+..=+ | --|=|=.+|- ...+..+.-.|..++.++.+|.+ +
T Consensus 160 ~lG--i~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~-~~~~~~~~~~~s~~e~Lr~iAvaRl~Ld 236 (322)
T TIGR03550 160 RLK--IPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAK-PGTPMENHPEPSLEEMLRTVAVARLILP 236 (322)
T ss_pred HCC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 859--9615123420469999999999999987865296579962676689-9864556999899999999999999759
Q ss_pred CCCEEECCC
Q ss_conf 962434048
Q gi|254780676|r 296 GFLMVSASP 304 (329)
Q Consensus 296 Gf~~V~SgP 304 (329)
.|.++.+.|
T Consensus 237 n~~~Iqa~~ 245 (322)
T TIGR03550 237 PDISIQVPP 245 (322)
T ss_pred CCCEEEECC
T ss_conf 997286088
No 21
>PRK08445 hypothetical protein; Provisional
Probab=99.09 E-value=4.8e-09 Score=85.47 Aligned_cols=229 Identities=14% Similarity=0.187 Sum_probs=159.0
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEE-----CCCCCCCCCCCCCCC--CCCCC--CCHHHHHHHHHHHHHHC
Q ss_conf 9999749823652578878767508972699986-----652235352234467--89988--88235799999999707
Q gi|254780676|r 59 NILRSRNLTTVCEEAGCPNIGECWNKNHATFMIL-----GAICTRACTFCNVAT--GKPQP--LDPQEPENISWAVRSMK 129 (329)
Q Consensus 59 ~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMil-----G~~CTR~C~FC~V~~--G~P~~--~D~~EP~rvA~av~~l~ 129 (329)
.++++..|+.+++-|..=+ -.-.+...+||-+- -|+|+-+|.||+-.. |.|.. ++++|-.+.++.....|
T Consensus 11 ~L~~~~dl~~L~~~A~~~R-~~~~g~~vvtfv~nrniN~TNiC~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~~a~~~g 89 (348)
T PRK08445 11 DLIKNAPLKELGQMALARK-QELHPEKITTFIVDRNINYTNICWVDCKFCAFYRHLKEEDAYILSFEEIDQKIEELLAIG 89 (348)
T ss_pred HHHHCCCHHHHHHHHHHHH-HHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9864899999999999999-997599359997016875526865489777574799998762279999999999998649
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC---C------CCCHHHHHHHHHCCCHHH-HHCCCC-
Q ss_conf 75189850544534532589999999999853358689981546---2------344689998741070233-201383-
Q gi|254780676|r 130 LSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD---F------LRKPHALEKVVSAKPDVF-NHNLET- 198 (329)
Q Consensus 130 Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD---f------~G~~~al~~v~~A~pdV~-nHNiET- 198 (329)
..-|.|.+=-. ||-+-..|.+.+++||+..|++.|-.++|- | ..-.+.|+++.+||.|-+ +-.-|.
T Consensus 90 ~tEv~i~GG~~---P~l~~~yY~~l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl 166 (348)
T PRK08445 90 GTQILFQGGVH---PKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEIL 166 (348)
T ss_pred CEEEEEECCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf 81899827989---999777999999999975775424279999999999981989999999999819887888662634
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCC----CCEEECCHHCCCCCCC
Q ss_conf 0002756389-7035899999999997089167014048876420688999999999669----9399750222786100
Q gi|254780676|r 199 VASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTAD----VDFLTMGQYLQPTRKH 273 (329)
Q Consensus 199 V~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~g----vdilTiGQYL~Ps~~h 273 (329)
++|.-..|+| ..+-++=|++.+.|.+.| +.|-+.+|.|-+||.+|+++-|.-||++. -=.--|-+=.||....
T Consensus 167 ~d~VR~~I~p~K~s~~~Wlei~~~AH~lG--i~ttaTMlyGhiEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~ 244 (348)
T PRK08445 167 SDRVRDIIAPKKLSSDRWLEVHRQAHKIG--MKSTATMMFGTVENDEEIIEHWEHIRDLQDETGGFRAFILWSFQPDNTP 244 (348)
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCH
T ss_conf 88999874888899999999999999869--9641213626779999999999999999986199789985431069970
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 7----800023846999999999974
Q gi|254780676|r 274 H----KVESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 274 ~----pV~ryv~P~eF~~~~~~a~~~ 295 (329)
+ |+.+ .+..++.++.+|.+.
T Consensus 245 l~~~~~~~~--~~~~~e~Lk~~AvsR 268 (348)
T PRK08445 245 LKEEHPEIK--KQSSNRYLRLLAVSR 268 (348)
T ss_pred HHCCCCCCC--CCCHHHHHHHHHHHH
T ss_conf 200378778--998799999999999
No 22
>PRK05927 hypothetical protein; Provisional
Probab=99.08 E-value=2.6e-09 Score=87.33 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=158.8
Q ss_pred HHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEE-----CCCCCCCCCCCCCCC--CCCCC--CCHHHHHHHHHHHHHH
Q ss_conf 99999749823652578878767508972699986-----652235352234467--89988--8823579999999970
Q gi|254780676|r 58 YNILRSRNLTTVCEEAGCPNIGECWNKNHATFMIL-----GAICTRACTFCNVAT--GKPQP--LDPQEPENISWAVRSM 128 (329)
Q Consensus 58 ~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMil-----G~~CTR~C~FC~V~~--G~P~~--~D~~EP~rvA~av~~l 128 (329)
-.+.+...|+.+++-|.== +.+-..+..+||.+- -|+|+-.|.||+-.. |.|.. ++++|-.+.++.....
T Consensus 13 ~~L~~~~dl~~l~~~A~~~-R~~~~~g~~Vtyv~n~~iN~TNvC~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~e~~~~ 91 (350)
T PRK05927 13 LELFLSSPLEELQERADSL-RKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPRSSDAYLLSFDEFRSLMQRYVSS 91 (350)
T ss_pred HHHHHCCCHHHHHHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9986179999999999999-997559986999620487741256576934774258999875327999999999999866
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------CC--CHHHHHHHHHCCCHHHHH-CCC-
Q ss_conf 7751898505445345325899999999998533586899815462-------34--468999874107023320-138-
Q gi|254780676|r 129 KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF-------LR--KPHALEKVVSAKPDVFNH-NLE- 197 (329)
Q Consensus 129 ~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf-------~G--~~~al~~v~~A~pdV~nH-NiE- 197 (329)
|.+-+-|++=-. ||-+-..|.+.++.||+..|++.|-.++|-= .| -.+.|+.+.+||.|-+-- .-|
T Consensus 92 G~tEv~i~GG~~---P~l~~eyy~~l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEI 168 (350)
T PRK05927 92 GVKTVLLQGGVH---PQLGIDYLEELVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEI 168 (350)
T ss_pred CCCEEEEECCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 983899826889---99986999999999997488866566999999999988599999999999973767689987501
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC----EEECCHHCCCCCC
Q ss_conf 30002756389-703589999999999708916701404887642068899999999966993----9975022278610
Q gi|254780676|r 198 TVASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD----FLTMGQYLQPTRK 272 (329)
Q Consensus 198 TV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd----ilTiGQYL~Ps~~ 272 (329)
=++|.-..|+| ..+-++=|++.+.|.+.| +.|-+.||.|-+||.+|+++.|.-||+..=+ .--|-+=.||...
T Consensus 169 l~d~VR~~I~p~K~s~~~Wl~i~~~AH~lG--i~ttaTmlyGhiEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt 246 (350)
T PRK05927 169 LSERVRKIISPKKMGPDGWINFHKLAHRLG--FRSTATMMFGHVENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNT 246 (350)
T ss_pred CCHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
T ss_conf 687777514888889999999999999859--975202463687999999999999999876509879999467654887
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHHC----CCCEEEC
Q ss_conf 07--800023846999999999974----9624340
Q gi|254780676|r 273 HH--KVESFVTPQDFKSYETIAYSK----GFLMVSA 302 (329)
Q Consensus 273 h~--pV~ryv~P~eF~~~~~~a~~~----Gf~~V~S 302 (329)
.+ .+..-.++++ .++.+|.+. .|.++.+
T Consensus 247 ~l~~~~~~~~~~~~--~Lr~~AvaRl~Ldn~~hIqa 280 (350)
T PRK05927 247 ALGRRVPQQASPEL--YYRILALARIFLDNFDHIAA 280 (350)
T ss_pred HHHHCCCCCCCHHH--HHHHHHHHHHHCCCCCCEEE
T ss_conf 46542788998457--59999999997069886372
No 23
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.88 E-value=3.8e-08 Score=79.09 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=158.2
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 6999866522353522344678998---8882357999999997077518985054453453258999999999985335
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQ---PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~---~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
=+.|-+.|.|+..|.||.-...+.- -++.+|-.+-|++++.+|++++++.+=. |-..-|..-++++|+.||..-+
T Consensus 75 faPLYlSN~C~N~C~YCGf~~~N~i~R~~Ls~eEI~~E~~ai~~~G~k~ILLvtGE--~~~~~~~~Yi~~~v~~ik~~f~ 152 (371)
T PRK09240 75 YTPLYLSNLCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLVTGE--HEAKVGVDYIRRALPLAREYFS 152 (371)
T ss_pred EECHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCC
T ss_conf 85044022217788758986778763002899999999999997695238854057--8776988999999999997567
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 868998154623446899987410702332013830-00275638---97035899999999997089167014048876
Q gi|254780676|r 164 STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGL 239 (329)
Q Consensus 164 ~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL 239 (329)
.+.|||-.- ..+..+.+.++|.|-+--=-||- +.+|..+. |.++|+++|+...++-++|-+-+ --|-.+||
T Consensus 153 ~v~iev~Pl----~~eeY~~L~~aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~v-giGaLlGL 227 (371)
T PRK09240 153 SVAIEVQPL----SEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKI-GLGALLGL 227 (371)
T ss_pred CEEEEECCC----CHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEE-CEEEEECC
T ss_conf 407995259----9899999998599869996032599999985889985452545237888987599703-61102265
Q ss_pred EECHHHHHHHHHHHH----HCCCCEEECC-HHCCCCCCCCCCCCCCCHHHHHH-----------------------HHHH
Q ss_conf 420688999999999----6699399750-22278610078000238469999-----------------------9999
Q gi|254780676|r 240 GETRNEILQLMDDLR----TADVDFLTMG-QYLQPTRKHHKVESFVTPQDFKS-----------------------YETI 291 (329)
Q Consensus 240 GEt~eEi~e~l~DLr----~~gvdilTiG-QYL~Ps~~h~pV~ryv~P~eF~~-----------------------~~~~ 291 (329)
++=..|++.++.-+. .-+.--+||. -=|+|...-..-..-|+..+|.. +++.
T Consensus 228 ~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~PRlrP~~g~~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lSTRE~~~~Rd~ 307 (371)
T PRK09240 228 SDWRTDALMTALHLRYLQRKYWRARYSISFPRLRPCTGGFEPKSIVSDRQLVQLICAFRLFLPDVEISLSTRESPEFRDN 307 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHH
T ss_conf 46899999999999999987799875763575336889988986578899999999999866555616864789899988
Q ss_pred HHHCCCCEEECC
Q ss_conf 997496243404
Q gi|254780676|r 292 AYSKGFLMVSAS 303 (329)
Q Consensus 292 a~~~Gf~~V~Sg 303 (329)
.+.+|...+.+|
T Consensus 308 li~lGvT~mSAg 319 (371)
T PRK09240 308 LIPLGITKMSAG 319 (371)
T ss_pred HHHHCCEEECCC
T ss_conf 885256025555
No 24
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=6e-07 Score=70.65 Aligned_cols=244 Identities=16% Similarity=0.259 Sum_probs=172.0
Q ss_pred CCHHHHHHHHHHHHC----CC----CEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC--CCCCHHHHH
Q ss_conf 986689999999974----98----23652578878767508972699986652235352234467899--888823579
Q gi|254780676|r 50 VSSGYKETYNILRSR----NL----TTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKP--QPLDPQEPE 119 (329)
Q Consensus 50 ~~~~~~~~~~~l~~~----~L----~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P--~~~D~~EP~ 119 (329)
...++..+-..+.+. .- ...=+...-.++...+..++.-|.=.-+-|...|.||.|...+. ...++++-.
T Consensus 100 G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il 179 (437)
T COG0621 100 GPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDIL 179 (437)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCHHHHH
T ss_conf 87347778999999861356542202345423333477776787479988120867888806405367875577989999
Q ss_pred HHHHHHHHHCCCEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 99999997077518985054----4534532589999999999853358-689981546234468999874107023320
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVD----RDDLDDGGAQHFAEVISAIRESAPS-TTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~----RDDL~DgGA~hfa~~I~~Ir~~~P~-~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329)
+=++....-|.|-++||+.| ..|++++ ..-|++-+++|-+ .|+ -.|-+..++=..-.+.|=.+++..|.++.|
T Consensus 180 ~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~-~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lIe~~~~~~kv~~~ 257 (437)
T COG0621 180 KEVKRLVAQGVKEIVLTGQDVNAYGKDLGGG-KPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPH 257 (437)
T ss_pred HHHHHHHHCCCEEEEEEEEEHHHCCCCCCCC-CCCHHHHHHHHHC-CCCCEEEEEECCCCHHCCHHHHHHHHCCCCCCCC
T ss_conf 9999999889749999988110104467777-6689999999960-7991089993588001188999998657841434
Q ss_pred CCC----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-
Q ss_conf 138----300027563897035899999999997089167014048876-42068899999999966993997502227-
Q gi|254780676|r 195 NLE----TVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ- 268 (329)
Q Consensus 195 NiE----TV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~- 268 (329)
=== -..+.-+..+.+++=++-+++++..|+.-|++.--|-+|||. |||+|+--++++=+++++-|.+-+=+|=.
T Consensus 258 lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETEedFe~tl~lv~e~~fd~~~~F~YSpR 337 (437)
T COG0621 258 LHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPR 337 (437)
T ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 46755569879999737876799999999999986898567526799799999999999999999748887853304899
Q ss_pred C-CCCC---CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8-6100---7800023846999999999974
Q gi|254780676|r 269 P-TRKH---HKVESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 269 P-s~~h---~pV~ryv~P~eF~~~~~~a~~~ 295 (329)
| |+.. -.|..-+.-+....+.+...+.
T Consensus 338 pGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~ 368 (437)
T COG0621 338 PGTPAALMPDQVPEEVKKERLRRLQELQQQI 368 (437)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9982113777899899999999999999999
No 25
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=98.77 E-value=1.5e-07 Score=74.82 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=108.4
Q ss_pred ECCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf 6652235352234467----8998888235799999999707751898505445345325899999999998533-5868
Q gi|254780676|r 92 LGAICTRACTFCNVAT----GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESA-PSTT 166 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~----G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~ 166 (329)
-..-|..+|.||.... .......+++-.+.++.....+.+++.+++-+-...++... .....+.+.. .+..
T Consensus 3 ~~~gC~~~C~fC~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~gg~p~~~~~~~~----~~~~~~~~~~~~~~~ 78 (165)
T pfam04055 3 ITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPDLVE----LLERLLKLEELEGIR 78 (165)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH----HHHHHHHHCCCCCEE
T ss_conf 8937487796899978578886522699999999988874598599993167666527777----788876531467648
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHH
Q ss_conf 99815462344689998741070233201383000275638-97035899999999997089167014048876-42068
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVR-PGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRN 244 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR-p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~e 244 (329)
+-+.+..+.-+.+.++.+.+++.+.+...+||...-+.... .+.++++.++.++.+++.|-.. .+++|+|+ ||+++
T Consensus 79 ~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~--~~~~i~~~~~e~~~ 156 (165)
T pfam04055 79 ITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPV--VVDNIVGLPGENDE 156 (165)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE--EEEEEEECCCCCHH
T ss_conf 9999851433104568999719852224635599999998579999899999999999879978--89999979999999
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780676|r 245 EILQLMDDL 253 (329)
Q Consensus 245 Ei~e~l~DL 253 (329)
++.++++.+
T Consensus 157 ~~~~~~~~i 165 (165)
T pfam04055 157 DLEETLELL 165 (165)
T ss_pred HHHHHHHHC
T ss_conf 999996039
No 26
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.75 E-value=2.2e-07 Score=73.70 Aligned_cols=224 Identities=17% Similarity=0.216 Sum_probs=151.1
Q ss_pred CCCEEECCCCCCCHHHHHCCCCEEEEEEC-----CCCCCCCCCCCCCCCC--CC--CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 98236525788787675089726999866-----5223535223446789--98--888235799999999707751898
Q gi|254780676|r 65 NLTTVCEEAGCPNIGECWNKNHATFMILG-----AICTRACTFCNVATGK--PQ--PLDPQEPENISWAVRSMKLSHVVI 135 (329)
Q Consensus 65 ~L~TVCeeA~CPNi~ECw~~gtATFMilG-----~~CTR~C~FC~V~~G~--P~--~~D~~EP~rvA~av~~l~Lk~vVi 135 (329)
.+..||+-|-==..--| +.+.||.+=- |+|+=.|+||+-.+++ +. .++.+|-.+-++.....|..-|-|
T Consensus 506 d~~~v~~~AD~lR~~~~--GD~VTyVvNRNINyTNVC~~~C~FCAF~r~~~~~~aY~ls~eeI~~r~~EA~~~GaTEV~i 583 (846)
T PRK09234 506 ALEAVCALADELRRDVV--GDDVTYVVNRNINFTNICYTGCRFCAFAQRKGDADAYSLSLDEVADRAWEAWVAGATEVCM 583 (846)
T ss_pred HHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 69999999999999871--8847998406763887755179735144788998761189999999999999769879983
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC---------CCCHHHHHHHHHCCCHHHHH-CCCC-CCCCCC
Q ss_conf 505445345325899999999998533586899815462---------34468999874107023320-1383-000275
Q gi|254780676|r 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF---------LRKPHALEKVVSAKPDVFNH-NLET-VASNYL 204 (329)
Q Consensus 136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf---------~G~~~al~~v~~A~pdV~nH-NiET-V~rLy~ 204 (329)
-+=-. ||..-..|.+.+++||+..|++.|-.++|-= ..-.+.|..+.+||.+-+-- --|- +++.-.
T Consensus 584 qGGih---P~l~~~~Y~di~r~iK~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~~LkeAGL~SlPGggAEIL~d~VR~ 660 (846)
T PRK09234 584 QGGID---PELPGTGYADLVRAVKARVPSMHVHAFSPMEIANGATRSGLSIREWLTALREAGLDTIPGTAAEILDDEVRW 660 (846)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH
T ss_conf 47879---899878999999999986898704508999999999982999999999999809777999741325879999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC------CEEECCHHCCCCCCCCCCC
Q ss_conf 6389-70358999999999970891670140488764206889999999996699------3997502227861007800
Q gi|254780676|r 205 MVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV------DFLTMGQYLQPTRKHHKVE 277 (329)
Q Consensus 205 ~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv------dilTiGQYL~Ps~~h~pV~ 277 (329)
.|+| ..+-++=|++.+.|.+.| +.|-|-||.|-.||.++.++-|.-||++.= .++.+-=--+.++.++.-.
T Consensus 661 ~Icp~K~~~~~Wlev~~~AH~lG--l~TtATMmyGHvEt~e~rv~HL~~lR~lQdeTGGFteFIPL~F~~~~tpl~~~g~ 738 (846)
T PRK09234 661 VLTKGKLPTAEWIEVVTTAHEVG--LRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQSAPLYLAGA 738 (846)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCC--CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHCCC
T ss_conf 76888888999999999999859--9752124356779999999999999999987599559974675678880332268
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 023846999999999974
Q gi|254780676|r 278 SFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 278 ryv~P~eF~~~~~~a~~~ 295 (329)
.---|.-.+.++-+|.+.
T Consensus 739 ~r~gpT~~e~l~~~AvsR 756 (846)
T PRK09234 739 ARPGPTHRDNRAVHALAR 756 (846)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 878998899999999999
No 27
>PRK05926 hypothetical protein; Provisional
Probab=98.72 E-value=2.8e-07 Score=73.00 Aligned_cols=258 Identities=16% Similarity=0.229 Sum_probs=163.1
Q ss_pred CCCCCCCHHHCCC---CCCCHH--HHHHHHHH---HHCCCCEEECCCCCCCHHHHHCCCCEEEEEE-----CCCCCCCCC
Q ss_conf 8888988245001---799866--89999999---9749823652578878767508972699986-----652235352
Q gi|254780676|r 35 TEKMQKPDWIRVR---APVSSG--YKETYNIL---RSRNLTTVCEEAGCPNIGECWNKNHATFMIL-----GAICTRACT 101 (329)
Q Consensus 35 ~~~~~kP~Wlk~~---~p~~~~--~~~~~~~l---~~~~L~TVCeeA~CPNi~ECw~~gtATFMil-----G~~CTR~C~ 101 (329)
+-.+++-+||+.- +-.|+. ..+--.++ ++..|+++++-|.==+ +-.....+||-+- -|+|+-.|+
T Consensus 7 ~~~~~~~~~l~~IleKv~~G~RLs~~dg~~L~~l~~~~dl~~lg~~Ad~~R--~~~~Gd~Vtfv~nr~INyTNvC~~~C~ 84 (371)
T PRK05926 7 PRILPKSSWLKTLFDKYLSGARLSEEDALQLLLLTDKEDQRALWSFADQVR--KNRVGDTVYYSSTLYLYPTNFCDFNCT 84 (371)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHCCCEEEEEEECCCCCCHHHHCCCC
T ss_conf 755789868999999997799999999999983487525999999999999--975699789962458652113426792
Q ss_pred CCCCCC--CCCCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC---C
Q ss_conf 234467--89988--8823579999999970775189850544534532589999999999853358689981546---2
Q gi|254780676|r 102 FCNVAT--GKPQP--LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD---F 174 (329)
Q Consensus 102 FC~V~~--G~P~~--~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD---f 174 (329)
||+-.. |.|.. ++++|-.+-++++ ..|..-|-|.+=-. ||-+-..|.+.+++||+..|++.|-.++|- |
T Consensus 85 FCaF~r~~~~~~aY~ls~eei~~~v~e~-~~g~tEv~i~GG~h---P~l~~~yY~~l~~~ik~~~P~v~ihaft~~EI~~ 160 (371)
T PRK05926 85 FCSFYAKPGDPKGWFYTPDQLIQSIQEI-KSPITETHIVAGCF---PSCNLAYYEELFSKIKENFPDIHIKALTAIEYAY 160 (371)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCEEEEECCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 4776368999765238999999999998-75996899717889---8998699999999999758987414488999999
Q ss_pred ------CCCHHHHHHHHHCCCHHHHH-CCCC-CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHH
Q ss_conf ------34468999874107023320-1383-0002756389-7035899999999997089167014048876420688
Q gi|254780676|r 175 ------LRKPHALEKVVSAKPDVFNH-NLET-VASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNE 245 (329)
Q Consensus 175 ------~G~~~al~~v~~A~pdV~nH-NiET-V~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eE 245 (329)
..-.+.|+.+.+||.+-+-- --|- +++.-..|+| ..+-++=|++.+.|.+.| +.|-+-+|-|-.||.+|
T Consensus 161 ~a~~~~~s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~lG--i~t~ATMmyGHiEt~~~ 238 (371)
T PRK05926 161 LSKLDNLPVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHSLG--IPSNATMLCYHRETPED 238 (371)
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHH
T ss_conf 9998099999999999983877788873243477899975889898999999999999869--97520465246699999
Q ss_pred HHHHHHHHHHCCCC------EEECCHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHHC----CCCEEEC
Q ss_conf 99999999966993------9975022278610078--00023846999999999974----9624340
Q gi|254780676|r 246 ILQLMDDLRTADVD------FLTMGQYLQPTRKHHK--VESFVTPQDFKSYETIAYSK----GFLMVSA 302 (329)
Q Consensus 246 i~e~l~DLr~~gvd------ilTiGQYL~Ps~~h~p--V~ryv~P~eF~~~~~~a~~~----Gf~~V~S 302 (329)
+++-|.-||++.=+ ++.+ =.||....+. +.+--.++..+.++-+|.+. .|.++.+
T Consensus 239 rv~HL~~lR~lQdeTgGF~~FIpl--~F~p~nt~l~~~~~~~~~~~~~~~lk~iAvsRL~Ldni~hIqa 305 (371)
T PRK05926 239 IVTHMSKLRDLQDETLGFKNFILL--KFASENNALGKRLRKMGQRHSIPPASIIAVARLFLDNFSNIKA 305 (371)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999999999988752994299724--4247788220202688887740678999999997069876785
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.67 E-value=3.8e-06 Score=65.01 Aligned_cols=229 Identities=15% Similarity=0.199 Sum_probs=156.3
Q ss_pred CEEEEEECCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHH-----CCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2699986652235352234467---899888823579999999970-----77518985054453453258999999999
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVAT---GKPQPLDPQEPENISWAVRSM-----KLSHVVITSVDRDDLDDGGAQHFAEVISA 157 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~---G~P~~~D~~EP~rvA~av~~l-----~Lk~vViTSV~RDDL~DgGA~hfa~~I~~ 157 (329)
..+.|.-+--|-=+|.||++.. |+ ..-.--|++|.+-++.+ |.+++-+ .||..-..-.++.+..++
T Consensus 196 p~~~i~TSRGCP~~C~FC~~p~~~~Gr--~~R~RSpe~VvdEIe~l~~~y~gv~~~~f----~DD~Ft~~~~r~~eic~~ 269 (472)
T TIGR03471 196 PYISLYTGRGCPSKCTFCLWPQTVGGH--RYRTRSAESVIEEVKYALENFPEVREFFF----DDDTFTDDKPRAEEIARK 269 (472)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCHHHHHHHHHH
T ss_conf 614764179988779687882102688--66215999999999999986689758999----477667899999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 985335868998154623446899987410702332013830-0027563897035899999999997089167014048
Q gi|254780676|r 158 IRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM 236 (329)
Q Consensus 158 Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM 236 (329)
|++++=.-....-+ | =+.+.|+.+.+||-.-+.-.+|+- ++.-..++.+.+-++..+.++.+|++| |.+...+|
T Consensus 270 i~~l~i~W~~~~Rv-~--~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~G--I~v~~~FI 344 (472)
T TIGR03471 270 LGPLGVTWSCNARA-N--VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLG--IKVHGTFI 344 (472)
T ss_pred HHHCCCEEEEEEEC-C--CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf 98769827876303-4--8999999999839848998037589999998538998999999999887579--87999998
Q ss_pred EE-EEECHHHHHHHHHHHHHCCCCEEECCHHCC-C-C-----------------------CCCCCCCC--CCCHHHHHHH
Q ss_conf 87-642068899999999966993997502227-8-6-----------------------10078000--2384699999
Q gi|254780676|r 237 LG-LGETRNEILQLMDDLRTADVDFLTMGQYLQ-P-T-----------------------RKHHKVES--FVTPQDFKSY 288 (329)
Q Consensus 237 vG-LGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s-----------------------~~h~pV~r--yv~P~eF~~~ 288 (329)
+| =|||.|++.+|++=..+.++|...+.-+.. | | .-+.++.. +.+.+|-.++
T Consensus 345 iG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~i~~~~~~~~d~~~~~~~~~~~~~ls~~ei~~~ 424 (472)
T TIGR03471 345 LGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDG 424 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHH
T ss_conf 77999988999999999997598908998725889969999999839855664123157773314458999899999999
Q ss_pred HHHHHHCCC-----------CEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999997496-----------2434048300103189999999999854
Q gi|254780676|r 289 ETIAYSKGF-----------LMVSASPLTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 289 ~~~a~~~Gf-----------~~V~SgPlVRSSY~A~e~~~~~~~~~~~ 325 (329)
-+.++..=+ .++.|.-.-+-.|++|..|.+.+.+|++
T Consensus 425 ~~~~y~~fy~rP~~i~~~~~~~~~~~~~~kr~~~~g~~~~~~~~~~~~ 472 (472)
T TIGR03471 425 VERFYKRFYFRPKKIGRIVREMLFDWDMMKRRLREGVEFFQFLRKRKK 472 (472)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999981889999999999857989999999959999999986159
No 29
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=98.49 E-value=3e-06 Score=65.73 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=144.1
Q ss_pred CCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHCC
Q ss_conf 6522353522344678----9988882357999999997077518985054453453258-----999999999985335
Q gi|254780676|r 93 GAICTRACTFCNVATG----KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRESAP 163 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G----~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~~P 163 (329)
-|||...|+|||=.-- .+=.|+.+|-.+-++-+.++|.+=|-|-+== .||-+- ..|.+.+++||+..|
T Consensus 12 TNIC~~~C~FCAF~~~~k~~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGl---nP~~~~nGssl~yy~~l~~~Ik~~~p 88 (331)
T TIGR00423 12 TNICVGKCKFCAFRRREKDKDAYVLSLEEILRKVKEAVAKGATEICIQGGL---NPQLDINGSSLEYYEELFRAIKQEFP 88 (331)
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 300232479633113468988814077999999999997198278852342---78876454149999999999974178
Q ss_pred ---CCEEEEECC---CCC------CC-HHHHHHHHHCCCHHHHHC-CCC-CCCCCCCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf ---868998154---623------44-689998741070233201-383-0002756389-7035899999999997089
Q gi|254780676|r 164 ---STTIEVLTP---DFL------RK-PHALEKVVSAKPDVFNHN-LET-VASNYLMVRP-GARYFHSLRLLQRVKELDP 227 (329)
Q Consensus 164 ---~~~IEvLiP---Df~------G~-~~al~~v~~A~pdV~nHN-iET-V~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~ 227 (329)
++.|--++| +|. -- .+.|+.|++||+|-+==- =|- |.|.=+.|+| .=+=++=|+|.+.|.+.|
T Consensus 89 PyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~~G- 167 (331)
T TIGR00423 89 PYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLG- 167 (331)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCC-
T ss_conf 9652476146868999999861897889999998885035677762265303358754779887278999999998666-
Q ss_pred EEEECCCEEEEEEECHHHHHHHHHHHHHC----CC--------CEEECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 16701404887642068899999999966----99--------39975022278-6100780002384699999999997
Q gi|254780676|r 228 LIFTKSGIMLGLGETRNEILQLMDDLRTA----DV--------DFLTMGQYLQP-TRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 228 ~i~TKSGlMvGLGEt~eEi~e~l~DLr~~----gv--------dilTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
|+|-+=||-|-=|+++++++-|.-||+. -+ .++.+ -|..+ ++-.+.+.---.|.-++.++-+|.+
T Consensus 168 -iptTATMMfGHve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL-~F~~~n~P~~~~~~~~~~~s~~~~Lk~~AiS 245 (331)
T TIGR00423 168 -IPTTATMMFGHVEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPL-PFQPENAPIYLEGEVRKGASGIDDLKVIAIS 245 (331)
T ss_pred -CCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf -96210112355276788999999998751700233522773210146-7788877711140023788868999999999
No 30
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.36 E-value=1.3e-05 Score=61.29 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=105.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCC-CCCCCCHHHHH-HHHHHHHHHCCCEEEEECCCCCCCCCCHH------HHHHHHHHHH
Q ss_conf 6999866522353522344678-99888823579-99999997077518985054453453258------9999999999
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATG-KPQPLDPQEPE-NISWAVRSMKLSHVVITSVDRDDLDDGGA------QHFAEVISAI 158 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G-~P~~~D~~EP~-rvA~av~~l~Lk~vViTSV~RDDL~DgGA------~hfa~~I~~I 158 (329)
...+.-.--|.++|+||++..- +....+++... .+...+++. .+.++.. .||.-+.|+ ..+..-...+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~-~~~~~~~---~~~~f~~~~~~~~~~~~~~~l~~~~ 274 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEG-GKRVVFF---VDDIFLYGSPALNDEKRFELLSLEL 274 (490)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCEE---CCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 69999978888899888886114600578899999999999987-3214502---3557744785434167888879999
Q ss_pred HHHCC------CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHH-HHHHHHHCCCEEE
Q ss_conf 85335------86899815462344689998741070233201383-0002756389703589999-9999997089167
Q gi|254780676|r 159 RESAP------STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLR-LLQRVKELDPLIF 230 (329)
Q Consensus 159 r~~~P------~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~-vL~~aK~~~~~i~ 230 (329)
.+..- ...+.-+.+|+..+.+.+..+..+|-..+-=-+|| .+++-+.+..+.+.+..++ .++-+++.+ +.
T Consensus 275 ~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~--~~ 352 (490)
T COG1032 275 IERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHG--LR 352 (490)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf 9863046760357523003343787999999876494369996589999999986147886888999999998679--86
Q ss_pred ECCCEEEEE-EECHHHHHHH---HHHHHHCCCC-EEEC
Q ss_conf 014048876-4206889999---9999966993-9975
Q gi|254780676|r 231 TKSGIMLGL-GETRNEILQL---MDDLRTADVD-FLTM 263 (329)
Q Consensus 231 TKSGlMvGL-GEt~eEi~e~---l~DLr~~gvd-ilTi 263 (329)
.+-++|+|+ |||++++.++ ++.+...|.. .+++
T Consensus 353 ~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~ 390 (490)
T COG1032 353 VKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP 390 (490)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 17999982799997999999999999987186745887
No 31
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.26 E-value=1.9e-05 Score=60.07 Aligned_cols=217 Identities=18% Similarity=0.269 Sum_probs=156.1
Q ss_pred HHCCCCEEE--EEECCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 508972699--986652235352234467899----88882357999999997077518985054453453258999999
Q gi|254780676|r 81 CWNKNHATF--MILGAICTRACTFCNVATGKP----QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEV 154 (329)
Q Consensus 81 Cw~~gtATF--MilG~~CTR~C~FC~V~~G~P----~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~ 154 (329)
-|+.+..-| |-+.|.|.-+|.||.-...+. ..++.+|-.+=+++++.||.|++.+-+ -.+-..-+..-++++
T Consensus 77 ~yGnrIvLFAPLYlSN~C~N~C~YCGF~~~Nk~i~Rk~Lt~eEi~~E~~al~~~G~krilLvt--GE~p~~~~~~Yi~~~ 154 (471)
T PRK09613 77 IYGNRIVLFAPLYISNYCVNNCVYCGFRRSNKELKRKKLTQEEIREEVKALESMGHKRLALVA--GEHPVNCDIDYILES 154 (471)
T ss_pred HCCCEEEEEECHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCHHHHHHH
T ss_conf 618758998541120333678753787477877763378999999999999976973189871--468887988999999
Q ss_pred HHHHHHHCCC------CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCC---CCCHHHHHHHHHHHHHH
Q ss_conf 9999853358------689981546234468999874107023320138300-0275638---97035899999999997
Q gi|254780676|r 155 ISAIRESAPS------TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVR---PGARYFHSLRLLQRVKE 224 (329)
Q Consensus 155 I~~Ir~~~P~------~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VR---p~a~Y~rSL~vL~~aK~ 224 (329)
|+.|+..-.+ +.||+-.- ..+.-++|.++|.+-+--=-||-- ..|..+- |.++|+++|+...++-+
T Consensus 155 i~~iy~~~~~~g~IrrvnVei~Pl----~~eeY~~L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~ 230 (471)
T PRK09613 155 IKTIYSTKNGNGEIRRVNVNIAPT----TVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAME 230 (471)
T ss_pred HHHHHHHCCCCCCEEEEEEEECCC----CHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHH
T ss_conf 999987524678533688994479----8699999998699969998630788789985878986563334157888987
Q ss_pred CCCEEEECCCEEEEEEECHHHHHHHHHHHH----HCCCCEEECCH-HCCCCCC---CCCCCCCCCHHHHH----------
Q ss_conf 089167014048876420688999999999----66993997502-2278610---07800023846999----------
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGETRNEILQLMDDLR----TADVDFLTMGQ-YLQPTRK---HHKVESFVTPQDFK---------- 286 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr----~~gvdilTiGQ-YL~Ps~~---h~pV~ryv~P~eF~---------- 286 (329)
+|-+-+ --|..+||..-.-|++.++.-+. .-|+.-.||.= =|+|-.. ......-|+-++|.
T Consensus 231 AGi~dV-GiGaLlGL~dwr~e~~~l~~Ha~~Le~~yg~g~hTIS~PRlrPa~g~~~~~~pp~~VsD~~f~qiiaa~RL~v 309 (471)
T PRK09613 231 AGIDDV-GIGVLFGLYDYRFEVLGLLMHAEHLEERFGVGPHTISVPRLEPALGSDLSENPPYLVSDEDFKKIVAILRLAV 309 (471)
T ss_pred CCCCEE-CCHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 599713-6002026536899999999999999997599985663675436899976678998679899999999999856
Q ss_pred -------------HHHHHHHHCCCCEEECCC
Q ss_conf -------------999999974962434048
Q gi|254780676|r 287 -------------SYETIAYSKGFLMVSASP 304 (329)
Q Consensus 287 -------------~~~~~a~~~Gf~~V~SgP 304 (329)
++++..+.+|...+.+|-
T Consensus 310 P~tGiilSTRE~~~~Rd~li~lGVsqmSAGS 340 (471)
T PRK09613 310 PYTGMILSTRESAELRDEVLELGVSQISAGS 340 (471)
T ss_pred CCCCCEEECCCCHHHHHHHHHHCCEEECCCC
T ss_conf 5457368537998899988853461233455
No 32
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=98.24 E-value=0.00012 Score=54.36 Aligned_cols=209 Identities=14% Similarity=0.228 Sum_probs=143.3
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CC-CHHHH-HHHHHHHH
Q ss_conf 72699986652235352234467899--888823579999999970775189850544534--53-25899-99999999
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATGKP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDL--DD-GGAQH-FAEVISAI 158 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--~D-gGA~h-fa~~I~~I 158 (329)
++..|.=-=+=|-+.|.||.|..-+. .--.++.-.+=++-...=|.|=++||+.|=+.- .| +|-.- ||+-+++|
T Consensus 152 ~~~a~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~LL~~l 231 (455)
T TIGR00089 152 KTRAFVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADLLREL 231 (455)
T ss_pred CEEEEEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 53899984026586977688134266001358899999999998469809999988525624778888976479999998
Q ss_pred HHHCCC-CEEEEECCCCCCCHHHHHHHHHCC--CHHHHHCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 853358-689981546234468999874107--0233201383----000275638970358999999999970891670
Q gi|254780676|r 159 RESAPS-TTIEVLTPDFLRKPHALEKVVSAK--PDVFNHNLET----VASNYLMVRPGARYFHSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 159 r~~~P~-~~IEvLiPDf~G~~~al~~v~~A~--pdV~nHNiET----V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T 231 (329)
.++.|| -.|=+.++.=..-.+-|..+++.. |.|+.|===- ..+.-+..+.+.+=++=+++++..|+.-|++.-
T Consensus 232 ~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P~~~i 311 (455)
T TIGR00089 232 SKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVPDAAI 311 (455)
T ss_pred HHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 40059702688604670326878999998507885352022126618869997037898889999999999984788177
Q ss_pred CCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC-CCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf 14048876-42068899999999966993997502227-86-100---78000238469999999999
Q gi|254780676|r 232 KSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT-RKH---HKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 232 KSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps-~~h---~pV~ryv~P~eF~~~~~~a~ 293 (329)
-|-||||. |||+|+=.+|++=+.+++-|-+-+=+|=+ |. +.. =.|..-+.-+--..+.+...
T Consensus 312 ~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~ 379 (455)
T TIGR00089 312 TTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQK 379 (455)
T ss_pred ECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 50268828999889999999998523844343120578888746356788898899999999999999
No 33
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.18 E-value=1.6e-05 Score=60.57 Aligned_cols=203 Identities=22% Similarity=0.260 Sum_probs=125.4
Q ss_pred EEEEECCCCCCCCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH------HHHHHHH
Q ss_conf 99986652235352234467--899--8888235799999999707751898505445345325899------9999999
Q gi|254780676|r 88 TFMILGAICTRACTFCNVAT--GKP--QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQH------FAEVISA 157 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~~--G~P--~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~h------fa~~I~~ 157 (329)
-|.=|-..|--.|.||.-.+ ++. .-+.++|-..+|+.-+++|-+-+..|-=+|-++.=-.|.. |..|+.-
T Consensus 77 VFiPLT~lCrd~C~YCtF~~~p~~~~~~~l~~deV~~ia~~g~~~GC~EALftlGd~PE~r~~~a~~~L~~~G~~st~~Y 156 (846)
T PRK09234 77 VFIPLTRLCRDRCHYCTFATVPGKLRAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 156 (846)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 43143068763688776436886556777899999999999998699561314688867748999999997198459999
Q ss_pred HHHHCCCCEEE-EECCCCCC---CHHHHHHHHHCCCHHHHHCCCC-CCCCC------CCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98533586899-81546234---4689998741070233201383-00027------56389703589999999999708
Q gi|254780676|r 158 IRESAPSTTIE-VLTPDFLR---KPHALEKVVSAKPDVFNHNLET-VASNY------LMVRPGARYFHSLRLLQRVKELD 226 (329)
Q Consensus 158 Ir~~~P~~~IE-vLiPDf~G---~~~al~~v~~A~pdV~nHNiET-V~rLy------~~VRp~a~Y~rSL~vL~~aK~~~ 226 (329)
++..+--+.=| =|.|-... ..+.+..+..-.|. .+-=||| ++||+ ..=.|.-+=..+|.+|+.|-+.+
T Consensus 157 l~~~~~~vl~etgLLPH~N~G~ls~~el~~Lk~v~~S-mGlMLEs~s~rL~~~~g~~H~~sP~K~P~~Rl~tl~~AG~l~ 235 (846)
T PRK09234 157 VRAMAIRVLEETGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFETKGGAHYGSPDKDPAVRLRVLEDAGRLS 235 (846)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC-CEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999998659888789888999999985236875-204511034644247898888999989899999999854047
Q ss_pred CEEEECCCEEEEEEECHHHHHHHHHHHHHC----CCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 916701404887642068899999999966----99399750222786100780002384699999999997
Q gi|254780676|r 227 PLIFTKSGIMLGLGETRNEILQLMDDLRTA----DVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 227 ~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~----gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
|+.-|||.+|.|||.+|.++.+..++++ |-=.=.|=|-.+|.+.- +....-.|..-+....+|..
T Consensus 236 --iPfTTGiLiGIGEt~~er~~sL~ai~~~h~~yghIQEVIiQNF~~K~~t-~m~~~~~~~~~e~~~~ia~a 304 (846)
T PRK09234 236 --VPFTTGILIGIGETLAERAESLFAIRKSHREYGHIQEVIVQNFRAKPDT-AMAGAPDAGLEDLLATIAVA 304 (846)
T ss_pred --CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf --9732111325779999999999999999997399657983688899898-68679997999999999999
No 34
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.15 E-value=0.00028 Score=51.87 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=122.1
Q ss_pred ECCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 665223535223446---789988882357999999997077518985054---45345325899999999998533586
Q gi|254780676|r 92 LGAICTRACTFCNVA---TGKPQPLDPQEPENISWAVRSMKLSHVVITSVD---RDDLDDGGAQHFAEVISAIRESAPST 165 (329)
Q Consensus 92 lG~~CTR~C~FC~V~---~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~---RDDL~DgGA~hfa~~I~~Ir~~~P~~ 165 (329)
+-..|.-+|.+|.-. ...+..++.+|-.++-+-++.||..++++|.=. |.| |-+.++.+++. +.
T Consensus 23 lT~~CNL~C~hCy~~~~~~~~~~ELs~~e~~~~id~l~~~Gv~~v~~tGGEPllr~D--------~~ei~~~a~~~--G~ 92 (375)
T PRK05301 23 LTYRCPLQCPYCSNPLDLARHGAELSTAEWIRVLREARALGVLQLHFSGGEPLLRKD--------LEELVAHARRL--GL 92 (375)
T ss_pred HHCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--------HHHHHHHHHHC--CC
T ss_conf 314007878466985004876578999999999999998699889961865245668--------99999999976--97
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECH
Q ss_conf 8998154623446899987410702332013830-002756389-70358999999999970891670140488764206
Q gi|254780676|r 166 TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETR 243 (329)
Q Consensus 166 ~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~ 243 (329)
.+.+.+....-+.+.++.+.++|++.++=.|... +..+-.+|- ...|++.++.++..+++|-.+. --++=.=.+.
T Consensus 93 ~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~---i~~ti~r~N~ 169 (375)
T PRK05301 93 YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLT---LNAVIHRHNI 169 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE---EEEEECCCCH
T ss_conf 5899606745579999999850998899956779877877763788629999999999997498169---9987230568
Q ss_pred HHHHHHHHHHHHCCCCEEEC
Q ss_conf 88999999999669939975
Q gi|254780676|r 244 NEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 244 eEi~e~l~DLr~~gvdilTi 263 (329)
+|+-++++-..+.|++.+.+
T Consensus 170 ~~l~~i~~la~~lGv~~~~l 189 (375)
T PRK05301 170 DQIPRIIELAVELGADRLEL 189 (375)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 88999999999729982898
No 35
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=98.10 E-value=0.00045 Score=50.34 Aligned_cols=211 Identities=16% Similarity=0.255 Sum_probs=138.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHH-HHHH--------HHHHHHHCCCEEEEECCCCCCCCCCH------HHHHHHHHHHH
Q ss_conf 522353522344678998888235-7999--------99999707751898505445345325------89999999999
Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQE-PENI--------SWAVRSMKLSHVVITSVDRDDLDDGG------AQHFAEVISAI 158 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~E-P~rv--------A~av~~l~Lk~vViTSV~RDDL~DgG------A~hfa~~I~~I 158 (329)
.-|++.|.||+-.+-.+..+...+ ..+- ..+...++.+.-.|.++- --|| +..+++.+..|
T Consensus 10 PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i~tiy----~GGGTPs~L~~~~l~~l~~~i 85 (376)
T PRK05628 10 PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVF----VGGGTPSLLGAEGLARVLDAV 85 (376)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE----ECCCHHHHCCHHHHHHHHHHH
T ss_conf 5764608999795733652478767999999999999999876177896578999----789446648999999999999
Q ss_pred HHHC-----CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEE
Q ss_conf 8533-----5868998154623446899987410702332013830-00275638970358999999999970891-670
Q gi|254780676|r 159 RESA-----PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFT 231 (329)
Q Consensus 159 r~~~-----P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~T 231 (329)
++.- .+++||+= |+-. ..+.|+.+.++|...++=.+.+. +...+.+-..++.++..+.+..++++|.+ +.
T Consensus 86 ~~~f~~~~~~EiTiE~n-P~~~-~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf~~in- 162 (376)
T PRK05628 86 RDTFGLAPDAEVTTEAN-PEST-SPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVN- 162 (376)
T ss_pred HHHCCCCCCCEEEEEEC-CCCC-CHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEE-
T ss_conf 97589998856999834-2658-99999999974987599951558999999749999989999999999875997255-
Q ss_pred CCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CCCCC-CCCCCC--CCCH------HHHHHHHHHHHHCCCCEE
Q ss_conf 14048876-4206889999999996699399750222-78610-078000--2384------699999999997496243
Q gi|254780676|r 232 KSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QPTRK-HHKVES--FVTP------QDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 232 KSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~Ps~~-h~pV~r--yv~P------~eF~~~~~~a~~~Gf~~V 300 (329)
--||.|| |.|.+++.+.++.+.+.++|-|++=++- .|... +-.+.+ ...| +.|....+.-.+.||.+.
T Consensus 163 -~DLIyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~~Gy~~y 241 (376)
T PRK05628 163 -LDLIYGTPGETDDDLRRSLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWY 241 (376)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf -5544279999999999999999732898156655565478677777751789999999999999999999984787617
Q ss_pred ECCCCCCCCHHH
Q ss_conf 404830010318
Q gi|254780676|r 301 SASPLTRSSYHA 312 (329)
Q Consensus 301 ~SgPlVRSSY~A 312 (329)
+-.-+.|..|..
T Consensus 242 eisnfak~g~~~ 253 (376)
T PRK05628 242 EVSNWARPGGEC 253 (376)
T ss_pred EEHHHCCCCHHH
T ss_conf 620321895366
No 36
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.08 E-value=0.0012 Score=47.33 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=133.1
Q ss_pred ECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 665223535223446789--988882357999999997077-51898505445345325899999999998533586899
Q gi|254780676|r 92 LGAICTRACTFCNVATGK--PQPLDPQEPENISWAVRSMKL-SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE 168 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~--P~~~D~~EP~rvA~av~~l~L-k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE 168 (329)
+...|.=+|.||....++ +.++..+|..++-.....++- ..+.++. =+=|-. ..+-+.++.+++. ++..+=
T Consensus 25 ~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~g--GEPll~---~~~~ei~~~~~~~-~~~~~~ 98 (347)
T COG0535 25 LTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTG--GEPLLR---PDLLEIVEYARKK-GGIRVS 98 (347)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC--CCCEEC---CCHHHHHHHHHHC-CCEEEE
T ss_conf 5887687499877242677677356878789999998718844998079--873334---5799999998513-872898
Q ss_pred EECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHH
Q ss_conf 81546234468999874107023320138300-02756389-70358999999999970891670140488764206889
Q gi|254780676|r 169 VLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEI 246 (329)
Q Consensus 169 vLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi 246 (329)
+-+-...=..+.++.+.+++.+.+.--++.+. ..+..+|- ...|++.++.++.+++.+.. ..-.+.-.+.+.+|+
T Consensus 99 ~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~---~~~~~~v~~~n~~~l 175 (347)
T COG0535 99 LSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL---VVINTTVTKINYDEL 175 (347)
T ss_pred EECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE---EEEEEEEECCCHHHH
T ss_conf 82687545388999887668876999974588532140027762699999999999873970---489999956634658
Q ss_pred HHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999966993997502227861007800023846999999999
Q gi|254780676|r 247 LQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 (329)
Q Consensus 247 ~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329)
.+..+-+++.|++.+.+.++............-.+|++.+.....-
T Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
T COG0535 176 PEIADLAAELGVDELNVFPLIPVGRGEENLELDLTPEEEELLLVLL 221 (347)
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999865976057676443143444300127867778989887
No 37
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=97.94 E-value=0.00084 Score=48.44 Aligned_cols=246 Identities=17% Similarity=0.214 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH---------CCCCEEEEEECCCCCCCCCCCCCCCC----CCCCC--
Q ss_conf 9986689999999974982365257887876750---------89726999866522353522344678----99888--
Q gi|254780676|r 49 PVSSGYKETYNILRSRNLTTVCEEAGCPNIGECW---------NKNHATFMILGAICTRACTFCNVATG----KPQPL-- 113 (329)
Q Consensus 49 p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw---------~~gtATFMilG~~CTR~C~FC~V~~G----~P~~~-- 113 (329)
-.|....++.+.+++.-+-+-=--..|=++.+.= ...+...-|-=.-|-..|.||+-.+. ....+
T Consensus 126 ~~g~~~~~i~~~l~~~y~vs~eK~~L~~~ia~~e~~~l~~~~~~~~~~SLYIHIPFC~~kC~YCdF~s~~i~~~~~~v~~ 205 (497)
T PRK08207 126 EEGMSEEEIHEELKEEYLIREEKAELLQEVAKRELSFVPDLNKDKNEVSIYIGIPFCPTRCLYCSFPSYPINGRKGLVEP 205 (497)
T ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 84899999999999986689999999999999999875123237884799998189589878999803115776331999
Q ss_pred --CH--HHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC------CCEEEEECCCCCCCHHHH
Q ss_conf --82--3579999999970775--18985054453453258999999999985335------868998154623446899
Q gi|254780676|r 114 --DP--QEPENISWAVRSMKLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESAP------STTIEVLTPDFLRKPHAL 181 (329)
Q Consensus 114 --D~--~EP~rvA~av~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P------~~~IEvLiPDf~G~~~al 181 (329)
|. .|-+.++..++..+++ -+-+-.=|-- --.+.++.+.+..|++.-+ +.+||+=-||-. ..+.|
T Consensus 206 Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS---~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdti-t~ekL 281 (497)
T PRK08207 206 YLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPT---SITAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTI-TEEKL 281 (497)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHH
T ss_conf 9999999999999876237980356997998100---2999999999999998657689997799978798962-99999
Q ss_pred HHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEEEEE-EECHHHHHHHHHHHHHCCC
Q ss_conf 987410702332013830-00275638970358999999999970891-67014048876-4206889999999996699
Q gi|254780676|r 182 EKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIMLGL-GETRNEILQLMDDLRTADV 258 (329)
Q Consensus 182 ~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gv 258 (329)
+.+.++|.+.++=|+-|- ...-+.+-..|+.++..+....|+++|.+ |- --||.|| |||.+++..+++.+.+...
T Consensus 282 ~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~GF~nIN--~DLI~GLPgqt~~~~~~tL~~i~~L~P 359 (497)
T PRK08207 282 EVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELGFDNIN--MDLIIGLPGEGLEEFKHTLEEIEKLMP 359 (497)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEE--EEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 999975987588835329989999818999999999999999985998497--743537999999999999999981399
Q ss_pred CEEECCHHCC--CCCCCCCCCCCCCHHH------HHHHHHHHHHCCCCEE
Q ss_conf 3997502227--8610078000238469------9999999997496243
Q gi|254780676|r 259 DFLTMGQYLQ--PTRKHHKVESFVTPQD------FKSYETIAYSKGFLMV 300 (329)
Q Consensus 259 dilTiGQYL~--Ps~~h~pV~ryv~P~e------F~~~~~~a~~~Gf~~V 300 (329)
|-||+-+--- .|+-+....+|--|++ ++.-.+++.++|+..-
T Consensus 360 d~iTvhsLaikr~s~l~~~~~~~~l~~~~~~~~m~~~~~~~~~~~g~~pY 409 (497)
T PRK08207 360 DSLTVHTLSIKRASRLTENKEKYKVADREEINAMMEEAEEWAKELGYVPY 409 (497)
T ss_pred CEEEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 82587666554686022245566899858999999999999997799841
No 38
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=97.93 E-value=0.00038 Score=50.86 Aligned_cols=210 Identities=12% Similarity=0.219 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CEEEEECC-----CCCCCCCCHHHHHHHHHHHHHHHC-
Q ss_conf 5223535223446789988882357999999997077-----51898505-----445345325899999999998533-
Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKL-----SHVVITSV-----DRDDLDDGGAQHFAEVISAIRESA- 162 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~L-----k~vViTSV-----~RDDL~DgGA~hfa~~I~~Ir~~~- 162 (329)
.-|.+.|.||+-.+-.....+.++ =+..-.+++.+ +---|.|+ +=--| .+.++.+.+..|+...
T Consensus 19 PFC~~~C~yC~f~~~~~~~~~~~~--y~~~l~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L---~~~~l~~l~~~l~~~~~ 93 (390)
T PRK06582 19 PFCLSKCPYCDFNSHVASTIDHNQ--WLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLM---NPVIVEGIINKISNLAI 93 (390)
T ss_pred CCCCCCCCCCCCCCEECCCCCHHH--HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHC---CHHHHHHHHHHHHHHCC
T ss_conf 899880899939071488588999--9999999999988764798057999898513528---99999999999998578
Q ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEE
Q ss_conf ----5868998154623446899987410702332013830-00275638970358999999999970891670140488
Q gi|254780676|r 163 ----PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIML 237 (329)
Q Consensus 163 ----P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMv 237 (329)
.+++||+= |+-. ..+.|+.+.++|...++=.+-+- +..-+.+-..++.++.++.++.+++..+++. --||.
T Consensus 94 ~~~~~EiTiE~n-P~~~-~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~~f~nin--iDLI~ 169 (390)
T PRK06582 94 IDNQTEITLETN-PTSF-ETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVS--FDLIY 169 (390)
T ss_pred CCCCCEEEEEEC-CCCC-CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEE--EEEEC
T ss_conf 888734899844-3206-1989999985598679997133898999971899889999999999987463354--45414
Q ss_pred EE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CC--CCCCCCCCCCHHH------HHHHHHHHHHCCCCEEECCCCC
Q ss_conf 76-4206889999999996699399750222-78-61--0078000238469------9999999997496243404830
Q gi|254780676|r 238 GL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TR--KHHKVESFVTPQD------FKSYETIAYSKGFLMVSASPLT 306 (329)
Q Consensus 238 GL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~--~h~pV~ryv~P~e------F~~~~~~a~~~Gf~~V~SgPlV 306 (329)
|| |.|.++..++++.+.+.+++-+++=+|- .| |+ +.+.-.+..-|++ |+.-.+.-.+.||.+.+-.-+.
T Consensus 170 GlP~QT~~~~~~~L~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~~~Gy~~yeisnfa 249 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISNYA 249 (390)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 79999899999999999833898517898885379778888741898999889999999999999984598604450004
Q ss_pred CCCHHH
Q ss_conf 010318
Q gi|254780676|r 307 RSSYHA 312 (329)
Q Consensus 307 RSSY~A 312 (329)
|..|..
T Consensus 250 kpg~e~ 255 (390)
T PRK06582 250 KIGQEC 255 (390)
T ss_pred CCCHHH
T ss_conf 787777
No 39
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.91 E-value=0.00019 Score=53.06 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 563897035899999999997089167014048876-4206889999999996699399750
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
+.|..+|+|.-=.+..+.+++.|-++| |-+|+|| ||+.+|.+++++-+.+.|||=+-|-
T Consensus 159 k~iNRgHd~~~y~dav~r~rkrgIkvc--~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 159 KRINRGHDFACYVDAVKRLRKRGIKVC--THLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCEEE--EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 987624544999999999997497498--888407988888999999999986687538888
No 40
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=97.90 E-value=0.0003 Score=51.63 Aligned_cols=186 Identities=13% Similarity=0.187 Sum_probs=128.5
Q ss_pred ECCCCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 665223535223446789-------9888823579999999970775189850---544534532589999999999853
Q gi|254780676|r 92 LGAICTRACTFCNVATGK-------PQPLDPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~-------P~~~D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
+-|.|-=+|.||-=..+. +..+..+|-.+++++..+||++.+-||. --|.| +.+-|+.|++.
T Consensus 23 vTdrCN~rC~YCmpe~~~~~~~~~~~~~Ls~eEi~~i~~~~~~lGi~kiRlTGGEPLlR~d--------i~~li~~l~~~ 94 (334)
T PRK00164 23 VTDRCNFRCTYCMPEGYFGLTFLPKEELLSLEEIERLVRAFAALGVRKIRLTGGEPLLRKD--------LEDIIARLAAL 94 (334)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--------HHHHHHHHHHC
T ss_conf 5044047387789977778788873422999999999999997096279860788432357--------89999998632
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 3586899815462344689998741070233201383000-275638970358999999999970891670140488764
Q gi|254780676|r 162 APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVAS-NYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~r-Ly~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG 240 (329)
.+--.|-+-|-.+. -.+.++.+.+||.+.+|=-|.|..+ .|..|..+.++.+-|+-+..|.++|.. ..|=...+==|
T Consensus 95 ~gi~~v~lTTNG~l-L~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~-~vKiN~V~~~g 172 (334)
T PRK00164 95 PGIRDLALTTNGYL-LARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLE-PVKVNAVLMKG 172 (334)
T ss_pred CCCCCEEEECCHHH-HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CEEEEEEEECC
T ss_conf 79751788444889-99999999985998699711318999999984899759999999999958987-61689996379
Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCHHCCCC-CCCCCCCCCCCHHHHHHH
Q ss_conf 206889999999996699399750222786-100780002384699999
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPT-RKHHKVESFVTPQDFKSY 288 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps-~~h~pV~ryv~P~eF~~~ 288 (329)
-.++||.+.++=-++.++++==|- |+.-. ...+.-..|++-++..+.
T Consensus 173 ~N~dEi~~li~~~~~~~i~vRFIE-~Mp~g~~~~~~~~~~~~~~~i~~~ 220 (334)
T PRK00164 173 VNDDEIPDLLRWAKDRGIQLRFIE-LMPTGEGNEWFRDHHLSGAEIRAR 220 (334)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE-EECCCCCCCHHHCCCCCHHHHHHH
T ss_conf 898999999999964696599999-821677764353065489999999
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=97.89 E-value=0.0014 Score=46.88 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=136.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCH------HHHHHHHHHHHHHHC
Q ss_conf 86652235352234467899888823579999999970--7751898505445345325------899999999998533
Q gi|254780676|r 91 ILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM--KLSHVVITSVDRDDLDDGG------AQHFAEVISAIRESA 162 (329)
Q Consensus 91 ilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l--~Lk~vViTSV~RDDL~DgG------A~hfa~~I~~Ir~~~ 162 (329)
|==.-|...|.||+-.+-.... + ....=+..-++++ ..+.--|+|+- --|| +.++.+.+.+|++..
T Consensus 8 iHiPFC~~~C~yC~f~~~~~~~-~-~~~~Y~~~L~~Ei~~~~~~~~i~tiy----~GGGTPs~l~~~~l~~l~~~i~~~~ 81 (374)
T PRK05799 8 IHIPFCKQKCLYCDFPSYSGKE-D-LMMEYIKALSKEIVNKTKNKKIKSIF----IGGGTPSYLSLEALEILLKTIKKLN 81 (374)
T ss_pred EEECCCCCCCCCCCCCCCCCCC-H-HHHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9948999858999794748870-0-69999999999999765798154999----7996502299999999999998568
Q ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEE
Q ss_conf ----5868998154623446899987410702332013830-00275638970358999999999970891-67014048
Q gi|254780676|r 163 ----PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIM 236 (329)
Q Consensus 163 ----P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlM 236 (329)
.+++||+=.-++ ..+.|+.+.++|...++=-+.+- +..-+.+-..++.++.++.+..++++|.+ +. --||
T Consensus 82 ~~~~~E~TiE~nP~~~--~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~nin--iDLI 157 (374)
T PRK05799 82 KKENLEFTVEGNPGTF--TEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNIN--VDLM 157 (374)
T ss_pred CCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE--EEEE
T ss_conf 8878458998566778--99999999971997588853358899999847999899999999999975997466--8854
Q ss_pred EEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCC--CCCCCCCCHH------HHHHHHHHHHHCCCCEEECCCC
Q ss_conf 876-4206889999999996699399750222-78-6100--7800023846------9999999999749624340483
Q gi|254780676|r 237 LGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKH--HKVESFVTPQ------DFKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 237 vGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h--~pV~ryv~P~------eF~~~~~~a~~~Gf~~V~SgPl 305 (329)
.|| |+|.+++.+.++.+.+.++|-|++=++- .| |+-+ +.-.+.-.|. .|....+.-.+.||.+.+-.-+
T Consensus 158 yGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~~~Gy~~yeis~f 237 (374)
T PRK05799 158 FGLPNQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLKEKGYHQYEISNF 237 (374)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 48988878999999999984172501365420578867998875188899999999999999999998479976764655
Q ss_pred CCCCHHH
Q ss_conf 0010318
Q gi|254780676|r 306 TRSSYHA 312 (329)
Q Consensus 306 VRSSY~A 312 (329)
.|..|..
T Consensus 238 ak~~~~~ 244 (374)
T PRK05799 238 AKKGKEC 244 (374)
T ss_pred CCCCHHH
T ss_conf 7887565
No 42
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=97.87 E-value=0.0014 Score=46.97 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 652235352234467899888--823579999999970775189850---544534532589999999999853358689
Q gi|254780676|r 93 GAICTRACTFCNVATGKPQPL--DPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIRESAPSTTI 167 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~P~~~--D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~I 167 (329)
=-.|-=+|.+|.-- -.|... +..-++..-+++.+.|...|.||. --|.| +-+.|+.++++- .-|
T Consensus 35 t~rCNL~C~~C~~i-~~~~~~l~~~Ls~ee~~~~~~e~Gap~V~itGGEPLLr~d--------l~eIv~~a~~~g--~~v 103 (318)
T TIGR03470 35 LFRCNLACAGCGKI-QYPAEILKQRLSVEECLRAVDECGAPVVSIPGGEPLLHPE--------IDEIVRGLVARK--KFV 103 (318)
T ss_pred CCCCCCCCCCCCCC-CCCCHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC--------HHHHHHHHHHCC--CEE
T ss_conf 13226778899741-3676465443899999999998499789951887455647--------999999999759--979
Q ss_pred EEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHH
Q ss_conf 98154623446899987410702332013830002756-38970358999999999970891670140488764206889
Q gi|254780676|r 168 EVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM-VRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEI 246 (329)
Q Consensus 168 EvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~-VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi 246 (329)
-+-+-...= .+.++.+.+++...++=-|.-.+...-. ++-...|++.++-++.+|+.|-.+.+.+.+ ==|++.+||
T Consensus 104 ~l~TNG~Ll-~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~aIr~ak~~G~~V~iN~Tv--f~~~n~~~i 180 (318)
T TIGR03470 104 YLCTNALLL-EKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL--FNDTDPEEV 180 (318)
T ss_pred EEECCHHHH-HHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEE--ECCCCHHHH
T ss_conf 997755200-99999985188836999801787886688717977999999999999869946799897--068999999
Q ss_pred HHHHHHHHHCCCCEEECCHHCC----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999966993997502227----861007800023846999999999974962434
Q gi|254780676|r 247 LQLMDDLRTADVDFLTMGQYLQ----PTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 247 ~e~l~DLr~~gvdilTiGQYL~----Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
.+.++-+.++|||-+||-.... |...| =+.|--+.+-|..+-+.+...++.+..
T Consensus 181 ~~~~d~~~~lgVdgi~isp~y~Ye~ap~q~~-fl~r~~~~~lfr~il~~~~~k~w~~n~ 238 (318)
T TIGR03470 181 AEFFDYLTDLGVDGMTISPGYAYEKAPDQDH-FLGRRQTKKLFREVLSNGNGKRWRFNH 238 (318)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999876997389766531023763111-158999999999999864565841126
No 43
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=97.83 E-value=0.00094 Score=48.09 Aligned_cols=183 Identities=14% Similarity=0.230 Sum_probs=130.0
Q ss_pred ECCCCCCCCCCCCCCCCC---C--CCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 665223535223446789---9--888823579999999970775189850---54453453258999999999985335
Q gi|254780676|r 92 LGAICTRACTFCNVATGK---P--QPLDPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~---P--~~~D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
+-|.|-=+|.||- ..|. | ..+..+|-.+++++...+|++.|=||. --|-| +.+-|+.+++. |
T Consensus 20 vTdrCN~rC~YCm-peg~~~~~~~~~Ls~eEi~~l~~~~~~~Gi~kvRlTGGEPLlR~d--------l~~li~~l~~~-~ 89 (329)
T PRK13361 20 VTDRCDFRCVYCM-SEDPCFLPRDQVLTLEELAWLAQAFTELGVRKIRLTGGEPLVRTG--------CDQLVARLGKL-P 89 (329)
T ss_pred EECCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--------HHHHHHHHHHC-C
T ss_conf 5244058387879-989987870246899999999999997295289962788223568--------89999998617-9
Q ss_pred CC-EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE
Q ss_conf 86-8998154623446899987410702332013830-002756389703589999999999708916701404887642
Q gi|254780676|r 164 ST-TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE 241 (329)
Q Consensus 164 ~~-~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE 241 (329)
++ .|-+-|-.+. -...++.+.+||.+.+|=-|.|. +..|..|..+..+++-|+-+..|.++|.. ..|=...+==|-
T Consensus 90 gi~~islTTNG~l-L~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~-~VKiN~V~lrg~ 167 (329)
T PRK13361 90 GLEELSMTTNGSR-LARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFE-RIKLNAVILRGQ 167 (329)
T ss_pred CCCEEEEECCHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-EEEEEEEEECCC
T ss_conf 9771899664776-89999999977998699735779999999772899769999999999977997-388999983687
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 068899999999966993997502227861-0078000238469999
Q gi|254780676|r 242 TRNEILQLMDDLRTADVDFLTMGQYLQPTR-KHHKVESFVTPQDFKS 287 (329)
Q Consensus 242 t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~-~h~pV~ryv~P~eF~~ 287 (329)
.++|+.+.++=-++.++++==| .|+.=.. ..+.-..+++-+|..+
T Consensus 168 NddEi~~l~~~~~~~~~~vRFI-E~MP~g~~~~~~~~~~~~~~ei~~ 213 (329)
T PRK13361 168 NDDEVLDLVEFCRERGLDIAFI-EEMPLGEIDERKRARHCSSDEVRA 213 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EEEECCCCCCCHHCCCCCHHHHHH
T ss_conf 8889999999997489836988-743268755400026567999999
No 44
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=97.79 E-value=0.0015 Score=46.58 Aligned_cols=208 Identities=14% Similarity=0.220 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCC-----CEEEEECCCCCCCCCCH------HHHHHHHHHHHHH
Q ss_conf 52235352234467--89988882357999999997077-----51898505445345325------8999999999985
Q gi|254780676|r 94 AICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKL-----SHVVITSVDRDDLDDGG------AQHFAEVISAIRE 160 (329)
Q Consensus 94 ~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~L-----k~vViTSV~RDDL~DgG------A~hfa~~I~~Ir~ 160 (329)
.-|.+.|.||+-.+ .++.. +.+ .=+..-++.|.. .-.-|.|+- --|| +.++++.+..|++
T Consensus 14 PFC~~~C~YC~f~~~~~~~~~-~~~--~Y~~aL~~ei~~~~~~~~~~~i~tiy----~GGGTPs~L~~~~l~~l~~~i~~ 86 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEV-PED--EYVDHLLADLDADLPLVQGREVHSIF----IGGGTPSLFSAEAIQRLLDGVRA 86 (378)
T ss_pred CCCCCCCCCCCCCCCCCCCCC-CHH--HHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCHHHHCCHHHHHHHHHHHHH
T ss_conf 789876999969650488877-699--99999999999987761797576999----78953330899999999999998
Q ss_pred HCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECC
Q ss_conf 335-----8689981546234468999874107023320138300-0275638970358999999999970891-67014
Q gi|254780676|r 161 SAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKS 233 (329)
Q Consensus 161 ~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKS 233 (329)
..+ +++||+= |+-. ..+.|+.+.++|.+.++=-+.+-. ...+.+-..++.++.++.++.++++|.+ +. -
T Consensus 87 ~f~~~~~~EiTiE~n-P~~~-~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~in--i 162 (378)
T PRK05660 87 RLPFAPDAEITMEAN-PGTV-EADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFN--L 162 (378)
T ss_pred HCCCCCCCEEEEECC-CCCC-CHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEE--E
T ss_conf 579877714898457-0533-08899999980987599961437899999827999999999999999976996065--4
Q ss_pred CEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHH-CCCCCCCCCCCCCCCHH------HHHHHHHHHHHCCCCEEECCCC
Q ss_conf 048876-420688999999999669939975022-27861007800023846------9999999999749624340483
Q gi|254780676|r 234 GIMLGL-GETRNEILQLMDDLRTADVDFLTMGQY-LQPTRKHHKVESFVTPQ------DFKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 234 GlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQY-L~Ps~~h~pV~ryv~P~------eF~~~~~~a~~~Gf~~V~SgPl 305 (329)
-||.|| |.|.+++.+.++.+.+.+++-|++=|+ +.|...... ..-.-|+ .|+.-.+.-.+.||.+.+-.-+
T Consensus 163 DLiyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~-~~~~lp~~~~~~~my~~~~~~L~~~Gy~~yeisnF 241 (378)
T PRK05660 163 DLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGS-RPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 23268999889999999999864498805788888658973764-67669985899999999999999779987861277
Q ss_pred CCCCHHHH
Q ss_conf 00103189
Q gi|254780676|r 306 TRSSYHAG 313 (329)
Q Consensus 306 VRSSY~A~ 313 (329)
.|..|...
T Consensus 242 Ak~g~~~~ 249 (378)
T PRK05660 242 AKPGYQCQ 249 (378)
T ss_pred CCCCHHHH
T ss_conf 78870222
No 45
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=97.76 E-value=0.0022 Score=45.45 Aligned_cols=221 Identities=19% Similarity=0.256 Sum_probs=137.6
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------CEEEEECCCCCC-C-CCCHHHHHHHH
Q ss_conf 97269998665223535223446789988882357999999997077-------518985054453-4-53258999999
Q gi|254780676|r 84 KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKL-------SHVVITSVDRDD-L-DDGGAQHFAEV 154 (329)
Q Consensus 84 ~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~L-------k~vViTSV~RDD-L-~DgGA~hfa~~ 154 (329)
.+.+-.-|-=.-|...|.||+-.+....+ +..+ .=+.--.++|.+ +.-.|++|-=-- - ..-.+.++.+.
T Consensus 54 ~~~~~LYiHIPFC~~~C~yC~F~~~~~~~-~~~~-~Y~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGGTPs~L~~~~l~~l 131 (447)
T PRK09058 54 ARKRLLYIHIPFCRTHCTFCGFFQNAWNP-ELVA-RYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSADDLARL 131 (447)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHCCHHHHHHH
T ss_conf 99877999825415868999884848881-2099-999999999999854101269816899980863474899999999
Q ss_pred HHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 999985335-----868998154623446899987410702332013830-0027563897035899999999997089-
Q gi|254780676|r 155 ISAIRESAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDP- 227 (329)
Q Consensus 155 I~~Ir~~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~- 227 (329)
+..|++..| +++||+=.-+| ..+.++.+.++|.+.++=-+.+- +..-+.+-..++.++.++.++.+++.+.
T Consensus 132 ~~~i~~~f~l~~d~EiTiE~nP~~~--~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~~ 209 (447)
T PRK09058 132 IEALREYLPLAPDCEITLEGRINGF--DDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDRA 209 (447)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCC--CHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999976899888469883387879--99999999964998057725448888998647999999999999999974996
Q ss_pred EEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC-CCCCCCC--CCCCH----HHHHHHH---HHHHHC
Q ss_conf 167014048876-42068899999999966993997502227-86-1007800--02384----6999999---999974
Q gi|254780676|r 228 LIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT-RKHHKVE--SFVTP----QDFKSYE---TIAYSK 295 (329)
Q Consensus 228 ~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps-~~h~pV~--ryv~P----~eF~~~~---~~a~~~ 295 (329)
.|. --||-|| |+|.+...+.++.+.+.|+|-|++=+|-- |. +-...++ +...| +.++.|. +.-.+.
T Consensus 210 ~in--iDLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~~ 287 (447)
T PRK09058 210 AVV--CDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQA 287 (447)
T ss_pred CEE--EHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 376--476427988999999999999964599868876545048977999987499999859999999999999999977
Q ss_pred CCCEEECCCCCCCCH
Q ss_conf 962434048300103
Q gi|254780676|r 296 GFLMVSASPLTRSSY 310 (329)
Q Consensus 296 Gf~~V~SgPlVRSSY 310 (329)
||......-+.|+.+
T Consensus 288 Gy~~ye~s~fAr~~~ 302 (447)
T PRK09058 288 GWRQLSNSHWARTNR 302 (447)
T ss_pred CCEEEECCHHCCCCH
T ss_conf 990873332116866
No 46
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=97.74 E-value=0.0031 Score=44.48 Aligned_cols=213 Identities=11% Similarity=0.160 Sum_probs=130.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CEEEEECCCCCCCCCCH------HHHHHHHH
Q ss_conf 69998665223535223446789988882357999999997077-----51898505445345325------89999999
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKL-----SHVVITSVDRDDLDDGG------AQHFAEVI 155 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~L-----k~vViTSV~RDDL~DgG------A~hfa~~I 155 (329)
.-.-|-=.-|.+.|.||+-.+-....-+.-+ .=+.--.++|.+ +-.-+.|+- --|| ...+.+.+
T Consensus 46 LsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~~tiy----~GGGTPS~L~~~~l~~ll 120 (436)
T PRK08208 46 LHLYIHIPFCESRCGFCNLFTCTGADNEFID-SYLDALIRQARQVALALGGVHFASFA----VGGGTPTLLNIAQLEKLF 120 (436)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEE----ECCCHHHCCCHHHHHHHH
T ss_conf 4999870440795889998376689833899-99999999999987663898356899----679432219999999999
Q ss_pred HHHHHHC---C---CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 9998533---5---86899815462344689998741070233201383-00027563897035899999999997089-
Q gi|254780676|r 156 SAIRESA---P---STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDP- 227 (329)
Q Consensus 156 ~~Ir~~~---P---~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~- 227 (329)
..|++.. + +++||+=.-++ ..+.|+.+.++|...++=-+.+ .+..-+.+-..++.++.++.++.++++|.
T Consensus 121 ~~l~~~f~~~~~~~EiTiE~nP~~~--~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~ 198 (436)
T PRK08208 121 FSVFDVLGVDLWNIPKSVETSPTTT--TAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQALELIRAAHFP 198 (436)
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCC--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999858998467159998663636--09999999973987278741448989999846889999999999999981998
Q ss_pred EEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHH-CCCCCCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEC
Q ss_conf 167014048876-420688999999999669939975022-278610078000238469---999999999749624340
Q gi|254780676|r 228 LIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQY-LQPTRKHHKVESFVTPQD---FKSYETIAYSKGFLMVSA 302 (329)
Q Consensus 228 ~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQY-L~Ps~~h~pV~ryv~P~e---F~~~~~~a~~~Gf~~V~S 302 (329)
+|. --||.|| |+|.+...+.++.+.+.+++-|.+=++ +.|...-..-..-...+. |+.-.+.-.+.||.+.+-
T Consensus 199 nin--iDLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~~~~~d~~~~my~~a~~~L~~~Gy~~Yei 276 (436)
T PRK08208 199 SLN--IDLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRGTAWDDNMHSLYVLARDLLLNAGYTQTSM 276 (436)
T ss_pred EEE--EEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 575--524436999999999999999982798989876330478983012479893799999999999999769443348
Q ss_pred CCCCCC
Q ss_conf 483001
Q gi|254780676|r 303 SPLTRS 308 (329)
Q Consensus 303 gPlVRS 308 (329)
.-+.|.
T Consensus 277 snFak~ 282 (436)
T PRK08208 277 RRFVRN 282 (436)
T ss_pred HHHCCC
T ss_conf 662089
No 47
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=97.72 E-value=0.0048 Score=43.11 Aligned_cols=213 Identities=14% Similarity=0.235 Sum_probs=135.0
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC------EEEEECCCCCCCCCCH------HHHHHH
Q ss_conf 2699986652235352234467899888823579999999970775------1898505445345325------899999
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS------HVVITSVDRDDLDDGG------AQHFAE 153 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk------~vViTSV~RDDL~DgG------A~hfa~ 153 (329)
-...-|==.-|.+.|.||+-.+-.+..-+.-+ .=+.--.++|.+. ..-|++|- --|| +..+.+
T Consensus 50 plsLYiHIPFC~~~C~YC~f~~~~~~~~~~~~-~Yl~~L~~Ei~~~~~~~~~~~~v~ti~----~GGGTPs~L~~~~l~~ 124 (453)
T PRK13347 50 PVSLYLHVPFCRSLCWFCGCNTIITQRDAPVE-AYVAALIREIRLVAALLPQRRRVSQLH----WGGGTPTILNPDQFER 124 (453)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCCHHHCCHHHHHH
T ss_conf 86999852771680899989733778866799-999999999999887627898078999----7884828599999999
Q ss_pred HHHHHHHHC-----CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999998533-----586899815462344689998741070233201383-00027563897035899999999997089
Q gi|254780676|r 154 VISAIRESA-----PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDP 227 (329)
Q Consensus 154 ~I~~Ir~~~-----P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~ 227 (329)
.+..|++.. .+++||+=.-++ ..+.++.+.++|...++=-+-+ .+...+.+-..++.++..+.++.++++|.
T Consensus 125 ll~~l~~~f~~~~~~EitiE~nP~~~--~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~ar~~Gf 202 (453)
T PRK13347 125 LMAALRDAFDFAPEAEIAVEIDPRTV--TAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGF 202 (453)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999975899999669998677868--9999999986498658871345787899982598999999999999998189
Q ss_pred -EEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCCCCCCC------CHH-H---HHHHHHHHHH
Q ss_conf -167014048876-42068899999999966993997502227-861007800023------846-9---9999999997
Q gi|254780676|r 228 -LIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHKVESFV------TPQ-D---FKSYETIAYS 294 (329)
Q Consensus 228 -~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~pV~ryv------~P~-e---F~~~~~~a~~ 294 (329)
+|- --||-|| |.|.+...++++.+.+.++|-|++=+|-. |... +.+|-+ .++ + |+...+.-.+
T Consensus 203 ~~in--iDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~Y~l~~~p~~~--~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~ 278 (453)
T PRK13347 203 ESIN--FDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRR--KNQRLIDEAALPDAEERLRQARAAADRLLA 278 (453)
T ss_pred CCEE--EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8655--555524899989999999999983199978852320265323--565325767895999999999999999996
Q ss_pred CCCCEEECCCCCCCC
Q ss_conf 496243404830010
Q gi|254780676|r 295 KGFLMVSASPLTRSS 309 (329)
Q Consensus 295 ~Gf~~V~SgPlVRSS 309 (329)
.||.+..-.-++|..
T Consensus 279 ~GY~~y~i~~FAkp~ 293 (453)
T PRK13347 279 AGYVPIGLDHFALPD 293 (453)
T ss_pred CCCEEEECHHHCCCC
T ss_conf 793895143303896
No 48
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=97.68 E-value=0.003 Score=44.57 Aligned_cols=207 Identities=12% Similarity=0.193 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----H---CCCEEEEECCCCCCCCCCH------HHHHHHHHHHHH
Q ss_conf 65223535223446789988882357999999997----0---7751898505445345325------899999999998
Q gi|254780676|r 93 GAICTRACTFCNVATGKPQPLDPQEPENISWAVRS----M---KLSHVVITSVDRDDLDDGG------AQHFAEVISAIR 159 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~----l---~Lk~vViTSV~RDDL~DgG------A~hfa~~I~~Ir 159 (329)
=.-|.+.|.||+-.+- +...+.-+ .-+...++. + .-++- +.++- --|| +.++.+.+..|+
T Consensus 13 IPFC~~~C~yC~f~~~-~~~~~~~~-~Y~~al~~e~~~~~~~~~~~~~-~~tiy----~GGGTPs~L~~~~L~~ll~~i~ 85 (374)
T PRK06294 13 IPFCSKKCHYCSFYTI-PYKEESVS-LYCNAVIKEGLKKLAPLRCTHF-IDTVF----FGGGTPSLVPPDLIQDILKTLE 85 (374)
T ss_pred CCCCCCCCCCCCCEEE-CCCCCCHH-HHHHHHHHHHHHHHHHCCCCCE-EEEEE----ECCCHHHHCCHHHHHHHHHHHC
T ss_conf 2789987999988102-48823399-9999999999999764348981-79999----7897016388999999999740
Q ss_pred HHC-CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEE
Q ss_conf 533-5868998154623446899987410702332013830-00275638970358999999999970891-67014048
Q gi|254780676|r 160 ESA-PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIM 236 (329)
Q Consensus 160 ~~~-P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlM 236 (329)
... .+++||+=.-++ ..+.++.+.+.|...++=.+.+- +...+.+-..++..++++.++.++++|.. |. --||
T Consensus 86 ~~~~~E~TiE~nP~~~--~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~in--iDLI 161 (374)
T PRK06294 86 APHATEITLEANPENL--SFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNLS--IDLI 161 (374)
T ss_pred CCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE--EEEE
T ss_conf 1688438998534769--99999999972987598972107678898738999999999999999975997433--2110
Q ss_pred EEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CCCCCCCCCCCCCC---HH------HHHHHHHHHHHCCCCEEECCCC
Q ss_conf 876-4206889999999996699399750222-78610078000238---46------9999999999749624340483
Q gi|254780676|r 237 LGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QPTRKHHKVESFVT---PQ------DFKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 237 vGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~Ps~~h~pV~ryv~---P~------eF~~~~~~a~~~Gf~~V~SgPl 305 (329)
.|| |.|.+++.+.++.+.+.++|-|++=+|- .|....+.-.+... |+ .|+...+.-.+.||.+.+=.-+
T Consensus 162 yGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 241 (374)
T PRK06294 162 YGLPTQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELLTSQGFERYELASY 241 (374)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 47888888999999999973496745555557658965888613389999899999999999999999759830115666
Q ss_pred CCCCH
Q ss_conf 00103
Q gi|254780676|r 306 TRSSY 310 (329)
Q Consensus 306 VRSSY 310 (329)
.|.-|
T Consensus 242 ak~~~ 246 (374)
T PRK06294 242 AKPQA 246 (374)
T ss_pred HCCCC
T ss_conf 35996
No 49
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=97.68 E-value=0.0039 Score=43.73 Aligned_cols=211 Identities=12% Similarity=0.193 Sum_probs=130.3
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCHHH-HHHHHHHH-HHHCCC---EEEEECCCCCCCCCCH------HHHHHHHHHHHH
Q ss_conf 522353522344678---998888235-79999999-970775---1898505445345325------899999999998
Q gi|254780676|r 94 AICTRACTFCNVATG---KPQPLDPQE-PENISWAV-RSMKLS---HVVITSVDRDDLDDGG------AQHFAEVISAIR 159 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G---~P~~~D~~E-P~rvA~av-~~l~Lk---~vViTSV~RDDL~DgG------A~hfa~~I~~Ir 159 (329)
.-|.+.|.||+-.+- .-...+..+ -.+-.++. +++.+. .--|.||- --|| +..+.+.+..|+
T Consensus 18 PFC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~tiy----~GGGTPSlL~~~~l~~ll~~l~ 93 (399)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITPSLGQPLQTVF----FGGGTPSLLPVEQLERILLTLD 93 (399)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE----ECCCHHHHCCHHHHHHHHHHHH
T ss_conf 006692889999751766666654057999999999999973141599621899----6995567489999999999999
Q ss_pred HHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEC
Q ss_conf 5335-----868998154623446899987410702332013830-00275638970358999999999970891-6701
Q gi|254780676|r 160 ESAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTK 232 (329)
Q Consensus 160 ~~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TK 232 (329)
+..+ +++||+=.-++ ..+.|+.+.++|...++=.+.+- +..-+.+-..+++++.++.++.++++|.+ +.
T Consensus 94 ~~f~~~~~~EiTiE~nP~~~--~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~~gf~nin-- 169 (399)
T PRK07379 94 QRFGIAPDAEISLEIDPGTF--DLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQAGIENFS-- 169 (399)
T ss_pred HHCCCCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE--
T ss_conf 86899988579998458989--99999999856988588970238688999848999999999999999976997554--
Q ss_pred CCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCC--CCCCCCCCCH------HHHHHHHHHHHHCCCCEEE
Q ss_conf 4048876-4206889999999996699399750222-78-610--0780002384------6999999999974962434
Q gi|254780676|r 233 SGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRK--HHKVESFVTP------QDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 233 SGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~--h~pV~ryv~P------~eF~~~~~~a~~~Gf~~V~ 301 (329)
--||.|| |.|.+++.+.++.+.+.+++-|++=++- .| |+- ...-.+.--| +.|..-.+.-.+.||.+.+
T Consensus 170 iDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ye 249 (399)
T PRK07379 170 LDLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYE 249 (399)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 55330789988999999999997338880788888963897799986058889999899999999999999868988787
Q ss_pred CCCCCCCCHHH
Q ss_conf 04830010318
Q gi|254780676|r 302 ASPLTRSSYHA 312 (329)
Q Consensus 302 SgPlVRSSY~A 312 (329)
=.-+.|..|.+
T Consensus 250 isnfak~g~~s 260 (399)
T PRK07379 250 ISNYARPGYQC 260 (399)
T ss_pred ECCCCCCCCHH
T ss_conf 40004787422
No 50
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=97.58 E-value=0.012 Score=40.37 Aligned_cols=214 Identities=13% Similarity=0.246 Sum_probs=131.5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH------HHHHHHHHHHCCCEEEEECCCCCCCCCCH------HHHHHHH
Q ss_conf 69998665223535223446789988882357------99999999707751898505445345325------8999999
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEP------ENISWAVRSMKLSHVVITSVDRDDLDDGG------AQHFAEV 154 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP------~rvA~av~~l~Lk~vViTSV~RDDL~DgG------A~hfa~~ 154 (329)
.-+-|-=.-|.+.|.||+-.+......++.+. ..++...+.++-+.- ++++- --|| +.++.+.
T Consensus 52 lSLYiHiPFC~~~C~YC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~-v~~i~----~GGGTPs~L~~~~l~~l 126 (456)
T PRK09249 52 LSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAPLLPGGRK-VSQLH----WGGGTPTFLSPEQLTRL 126 (456)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEE----ECCCCHHHCCHHHHHHH
T ss_conf 59998517816828999980135788557999999999999998876178983-67999----78967064999999999
Q ss_pred HHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 999985335-----868998154623446899987410702332013830-00275638970358999999999970891
Q gi|254780676|r 155 ISAIRESAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL 228 (329)
Q Consensus 155 I~~Ir~~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~ 228 (329)
+..|++.-+ +++||+=.-++ ..+.|+.+.++|...++=.+-+- +...+.+-..++++...+++..++++|..
T Consensus 127 ~~~l~~~f~~~~~~EitiE~nP~~~--~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~ar~~Gf~ 204 (456)
T PRK09249 127 MALLREHFNFAPDAEISIEIDPREL--DLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAARELGFT 204 (456)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999986688988359998434758--79999999845975688605357879999852889999999999999981997
Q ss_pred -EEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCC-CCC-CCCC--CCCH----HHHHHHHHHHHHCCC
Q ss_conf -67014048876-42068899999999966993997502227-861-007-8000--2384----699999999997496
Q gi|254780676|r 229 -IFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTR-KHH-KVES--FVTP----QDFKSYETIAYSKGF 297 (329)
Q Consensus 229 -i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~-~h~-pV~r--yv~P----~eF~~~~~~a~~~Gf 297 (329)
|. --||-|| |.|.+...++++.+.+.+.|-|.+=.|-. |.. +|. .+.+ --.+ +.|+.-.+.-.+.||
T Consensus 205 ~in--~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis~y~yah~P~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~aGY 282 (456)
T PRK09249 205 SIN--FDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLEILQAAIETLTEAGY 282 (456)
T ss_pred CCC--HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 210--488606998769999999999965599889950223472045565303656797999999999999999997798
Q ss_pred CEEECCCCCCCC
Q ss_conf 243404830010
Q gi|254780676|r 298 LMVSASPLTRSS 309 (329)
Q Consensus 298 ~~V~SgPlVRSS 309 (329)
.++.-.-+.|..
T Consensus 283 ~~igidhFA~p~ 294 (456)
T PRK09249 283 QYIGMDHFALPD 294 (456)
T ss_pred EEECCCCCCCCC
T ss_conf 585356444788
No 51
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=97.58 E-value=0.012 Score=40.35 Aligned_cols=217 Identities=12% Similarity=0.161 Sum_probs=134.9
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHCCCEEEEECCCCCCCCCCH------HHHH
Q ss_conf 08972699986652235352234467899888823579999999----9707751898505445345325------8999
Q gi|254780676|r 82 WNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAV----RSMKLSHVVITSVDRDDLDDGG------AQHF 151 (329)
Q Consensus 82 w~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av----~~l~Lk~vViTSV~RDDL~DgG------A~hf 151 (329)
++.+|...-|-=.-|.+.|.||+-.+-...+.+..--....+.+ +.++.+ -|.|+- --|| +..+
T Consensus 2 ~~~k~~~LYIHIPFC~~kC~YCdF~s~~~~~~~~~~~~~~~~el~~~~~~~~~~--~i~TIy----fGGGTPSlL~~~~l 75 (353)
T PRK05904 2 FNKKTKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIK--QFKTIY----LGGGTPNCLNDQLL 75 (353)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CEEEEE----ECCCCCHHCCHHHH
T ss_conf 888866699980899870899989841887685999999999999998764799--544899----89986020899999
Q ss_pred HHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999853---35868998154623446899987410702332013830-0027563897035899999999997089
Q gi|254780676|r 152 AEVISAIRES---APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDP 227 (329)
Q Consensus 152 a~~I~~Ir~~---~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~ 227 (329)
.+.+..|+.. +.+++||+= |+- =..+.|+.+.++|...++=.+.+- +..-+.+-..|+.++.++.++.++++|.
T Consensus 76 ~~ll~~i~~~~~~~~EiTiEaN-P~~-~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf 153 (353)
T PRK05904 76 DILLSTIKPYVDNNCEFTIECN-PEL-ITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGI 153 (353)
T ss_pred HHHHHHHHHHCCCCCEEEEEEC-CCC-CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999976387835999865-144-87899999996498768887455998999983899989999999999998199
Q ss_pred -EEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-C---CCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf -167014048876-42068899999999966993997502227-8-6---100780002384699999999997496243
Q gi|254780676|r 228 -LIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-T---RKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 228 -~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s---~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329)
++. --||.|| |+|.++..+.++.+.+.+++-+.+=+.-= | | +....+..=..-+.|+...+.-.+.||.+-
T Consensus 154 ~nIs--iDLIyGlPgQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~~~~~~~~~~d~~~~~~~~~~~~L~~~Gy~~Y 231 (353)
T PRK05904 154 YNIS--CDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRY 231 (353)
T ss_pred CEEE--ECEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 7360--04263599999999999999999659991788888985797320478899927999999999999986699706
Q ss_pred ECCCCCCC
Q ss_conf 40483001
Q gi|254780676|r 301 SASPLTRS 308 (329)
Q Consensus 301 ~SgPlVRS 308 (329)
+=+-+.|+
T Consensus 232 EISNfAk~ 239 (353)
T PRK05904 232 EVSNWTNN 239 (353)
T ss_pred EECCCCCC
T ss_conf 63512379
No 52
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=97.54 E-value=0.0057 Score=42.56 Aligned_cols=206 Identities=16% Similarity=0.273 Sum_probs=129.6
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCC----EEEEECCCCCCCCCCH------HHHHHHHHHHHHHH
Q ss_conf 522353522344678--99888823579999999970775----1898505445345325------89999999999853
Q gi|254780676|r 94 AICTRACTFCNVATG--KPQPLDPQEPENISWAVRSMKLS----HVVITSVDRDDLDDGG------AQHFAEVISAIRES 161 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G--~P~~~D~~EP~rvA~av~~l~Lk----~vViTSV~RDDL~DgG------A~hfa~~I~~Ir~~ 161 (329)
.-|.+.|.||+-.+- ...++| .=+..-++++.+. .--|+|+- --|| +.++.+.+..|++.
T Consensus 9 PFC~~~C~yC~f~~~~~~~~~~~----~Y~~aL~~Ei~~~~~~~~~~~~tiy----~GGGTPs~L~~~~l~~ll~~i~~~ 80 (377)
T PRK08599 9 PFCEHICYYCDFNKVFIENQPVD----EYLDALIKEMESTVAKYIRKLKTIY----IGGGTPTALSAEQLERLLNAIHRT 80 (377)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78998689996916468987799----9999999999976551499557999----799810009999999999999997
Q ss_pred CC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCC
Q ss_conf 35-----868998154623446899987410702332013830-00275638970358999999999970891-670140
Q gi|254780676|r 162 AP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSG 234 (329)
Q Consensus 162 ~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSG 234 (329)
-+ +++||+=.-++ ..+.|+.+.++|.+.++=.+.+- +..-+.+-..++.++.++.++.++++|.+ |. --
T Consensus 81 f~~~~~~EiTiE~nP~~~--~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~in--iD 156 (377)
T PRK08599 81 LPLSDLEEFTFEANPGDL--TKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNIS--ID 156 (377)
T ss_pred CCCCCCCEEEEEECCCCC--CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE--EE
T ss_conf 697767327999551516--39999999970998799965359879999868999899999999999975997411--56
Q ss_pred EEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCCCCCC--CCCCH------HHHHHHHHHHHHCCCCEEECC
Q ss_conf 48876-4206889999999996699399750222-78-61007800--02384------699999999997496243404
Q gi|254780676|r 235 IMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKHHKVE--SFVTP------QDFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 235 lMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h~pV~--ryv~P------~eF~~~~~~a~~~Gf~~V~Sg 303 (329)
||.|| |.|.+.+.+.++.+.+.+++-|++=++- .| |+-+-.+. +.--| +.|+...+.-.+.||.+.+-.
T Consensus 157 LIyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L~~~Gy~~yeis 236 (377)
T PRK08599 157 LIYALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEMEKHGFHQYEIS 236 (377)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 54278889899999999999730636345544233588768888755987899979999999999999997599741203
Q ss_pred CCCCCCHH
Q ss_conf 83001031
Q gi|254780676|r 304 PLTRSSYH 311 (329)
Q Consensus 304 PlVRSSY~ 311 (329)
-+.|.-|.
T Consensus 237 nfak~g~~ 244 (377)
T PRK08599 237 NFAKPGFE 244 (377)
T ss_pred HHCCCCCH
T ss_conf 31378722
No 53
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=97.50 E-value=0.0037 Score=43.93 Aligned_cols=210 Identities=11% Similarity=0.131 Sum_probs=124.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--E---EEEECCCCCCCCCCH------HHHHHHHHHHHHHHC
Q ss_conf 52235352234467899888823579999999970775--1---898505445345325------899999999998533
Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS--H---VVITSVDRDDLDDGG------AQHFAEVISAIRESA 162 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk--~---vViTSV~RDDL~DgG------A~hfa~~I~~Ir~~~ 162 (329)
.-|.+.|.||+-.+-....-+..+-.=+.--.+++.+. . --|.||- --|| +.++.+.+..|++..
T Consensus 27 PFC~~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy----~GGGTPs~L~~~~l~~l~~~l~~~f 102 (393)
T PRK08898 27 PWCVRKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVHTVF----IGGGTPSLLSAAGLDRLLSDVRALL 102 (393)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE----ECCCHHHHCCHHHHHHHHHHHHHHC
T ss_conf 787160999988142278788679999999999999757770698677999----7684246389999999999999858
Q ss_pred C-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 5-----868998154623446899987410702332013830-0027563897035899999999997089167014048
Q gi|254780676|r 163 P-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM 236 (329)
Q Consensus 163 P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM 236 (329)
+ +++||+= |+-. +.+.++.+.++|...++=-+.+- +...+.+-..+++++.++.+..+++...++. --||
T Consensus 103 ~~~~~~E~tiE~n-P~~~-~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~in--iDLi 178 (393)
T PRK08898 103 PLDPDAEITLEAN-PGTF-EAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFN--LDLM 178 (393)
T ss_pred CCCCCCEEEEEEC-CCCC-CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC--CHHH
T ss_conf 9765731688736-2506-0999999985498648995202899999981899999999999999997374667--2898
Q ss_pred EEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCCCCCCCCCCHHH-HH---HHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 876-4206889999999996699399750222-78-610078000238469-99---99999997496243404830010
Q gi|254780676|r 237 LGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKHHKVESFVTPQD-FK---SYETIAYSKGFLMVSASPLTRSS 309 (329)
Q Consensus 237 vGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h~pV~ryv~P~e-F~---~~~~~a~~~Gf~~V~SgPlVRSS 309 (329)
-|| |.|.++..+.++.+.+.++|-|.+=++- .| |.-+.........++ ++ ...+.-.+.||.+.+..-+.|..
T Consensus 179 yGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~~~~~~lP~~d~~~~m~~~~~~~L~~~GY~~yeisnFAkpg 258 (393)
T PRK08898 179 YALPNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIHARLAAAGYAHYETSAYAKPG 258 (393)
T ss_pred HCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHCCC
T ss_conf 35988989999999999862499958987777648973321576795989999999999999997699828725423478
Q ss_pred HH
Q ss_conf 31
Q gi|254780676|r 310 YH 311 (329)
Q Consensus 310 Y~ 311 (329)
|.
T Consensus 259 ~~ 260 (393)
T PRK08898 259 RQ 260 (393)
T ss_pred CH
T ss_conf 45
No 54
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=97.50 E-value=0.013 Score=40.07 Aligned_cols=212 Identities=17% Similarity=0.329 Sum_probs=139.2
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHH---CCCEEEEECCC----CCCCCCCH
Q ss_conf 767508972699986652235352234467899---888823579999999970---77518985054----45345325
Q gi|254780676|r 78 IGECWNKNHATFMILGAICTRACTFCNVATGKP---QPLDPQEPENISWAVRSM---KLSHVVITSVD----RDDLDDGG 147 (329)
Q Consensus 78 i~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P---~~~D~~EP~rvA~av~~l---~Lk~vViTSV~----RDDL~DgG 147 (329)
...-|..+|=-|.=--|=|--.|.||-+...+. .-.+. +.|-+-|+.| |-+=||||.|| .||+++.|
T Consensus 202 ~~DAf~~~~RAFvKVQdGCn~~CsyC~IP~~RGt~~RS~~~---e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g 278 (492)
T TIGR01579 202 AVDAFEERTRAFVKVQDGCNKFCSYCIIPFARGTRSRSVPL---EKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENG 278 (492)
T ss_pred EEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 23100278862578875889884410140337897641667---899999999973775599984001444568887667
Q ss_pred HHHHHHHHHHHHHHCCCC-EEEE--ECCCCCCCHHHHHHHHHCCCHHHHHCC----CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999998533586-8998--154623446899987410702332013----830002756389703589999999
Q gi|254780676|r 148 AQHFAEVISAIRESAPST-TIEV--LTPDFLRKPHALEKVVSAKPDVFNHNL----ETVASNYLMVRPGARYFHSLRLLQ 220 (329)
Q Consensus 148 A~hfa~~I~~Ir~~~P~~-~IEv--LiPDf~G~~~al~~v~~A~pdV~nHNi----ETV~rLy~~VRp~a~Y~rSL~vL~ 220 (329)
.-|++-++.|-+..|++ .|=+ |=|+ --.++|-.++.+.+-+.-|== =+..+.-+..+.+..=+..++++.
T Consensus 279 -~~L~~Ll~~i~~q~~g~~RiRlSS~~p~--~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~ 355 (492)
T TIGR01579 279 -SSLAKLLEQILKQIPGIERIRLSSIDPE--DIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQ 355 (492)
T ss_pred -CCHHHHHHHHHHHCCCCEEEEECCCCHH--HHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf -6089999999864688346763257765--5048999997347641632000022277379842487887689999999
Q ss_pred HHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCC------CCCCCCHHHHHHHHHHH
Q ss_conf 9997089167014048876-42068899999999966993997502227-8610078------00023846999999999
Q gi|254780676|r 221 RVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHK------VESFVTPQDFKSYETIA 292 (329)
Q Consensus 221 ~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~p------V~ryv~P~eF~~~~~~a 292 (329)
.+++..|++.-=+=+|||. |||+++=-++++=+++++---|-|=+|=. |.-.-.. |..-+--|.-+.+++.+
T Consensus 356 ~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~rf~v~~~~~KeR~~~L~~~~ 435 (492)
T TIGR01579 356 KLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDDRFKVPETIKKERVKRLKELA 435 (492)
T ss_pred HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99850776303760374088898899999999985266021335426884328120478744276115889999999998
Q ss_pred HHC
Q ss_conf 974
Q gi|254780676|r 293 YSK 295 (329)
Q Consensus 293 ~~~ 295 (329)
.+.
T Consensus 436 ~~~ 438 (492)
T TIGR01579 436 EKV 438 (492)
T ss_pred HHH
T ss_conf 888
No 55
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=97.49 E-value=0.0076 Score=41.69 Aligned_cols=204 Identities=13% Similarity=0.143 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------CEEEEECCCCCCCCCCH------HHHHHHHHHHHHHH
Q ss_conf 5223535223446789988882357999999997077------51898505445345325------89999999999853
Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKL------SHVVITSVDRDDLDDGG------AQHFAEVISAIRES 161 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~L------k~vViTSV~RDDL~DgG------A~hfa~~I~~Ir~~ 161 (329)
.-|.+.|.||+-.+-. ...+. ...-+..-.+++.+ +..-|+|+- --|| ...+.+.+..|+..
T Consensus 8 PFC~~~C~YCdF~~~~-~~~~~-~~~Y~~aL~~Ei~~~~~~~~~~~~i~tiy----~GGGTPS~l~~~~l~~ll~~l~~~ 81 (351)
T PRK08446 8 PFCESKCGYCAFNSYE-DKFDL-KEEYFQALCLDLKFQLKQFIQDEKIESVF----IGGGTPSTVSAKLYEPIFEIIYPY 81 (351)
T ss_pred CCCCCCCCCCCCCCEE-CCCCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEEE----ECCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 7838808999792851-79567-99999999999999987626899366999----689745637999999999999976
Q ss_pred ---CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEE
Q ss_conf ---35868998154623446899987410702332013830-00275638970358999999999970891-67014048
Q gi|254780676|r 162 ---APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIM 236 (329)
Q Consensus 162 ---~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlM 236 (329)
+.+++||+ -|+- -..+.++.+.++|...++=.+.+- +..-+.+-..++..+.++.++.++++|.. +. --||
T Consensus 82 ~~~~~EiTiE~-nP~~-~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~nin--iDLI 157 (351)
T PRK08446 82 LSKDCEITTEA-NPNS-ATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNIS--IDLI 157 (351)
T ss_pred CCCCCEEEEEE-CCCC-CCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEC--HHHH
T ss_conf 69883599976-7686-899999999864987699973137689999818998899999999999984996342--2553
Q ss_pred EEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEECCCCCC
Q ss_conf 876-4206889999999996699399750222-78-6100780002384699-9999999974962434048300
Q gi|254780676|r 237 LGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKHHKVESFVTPQDF-KSYETIAYSKGFLMVSASPLTR 307 (329)
Q Consensus 237 vGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h~pV~ryv~P~eF-~~~~~~a~~~Gf~~V~SgPlVR 307 (329)
.|| |+|.+++.+.++.+.+.+++-|++=++- .| |+-.-....--..+++ ....+.-.+.||.+-+-+-+.|
T Consensus 158 yGlP~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~YEiSnfAk 232 (351)
T PRK08446 158 YNTKLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFEEKNAKKKDDENLAKFVREQLEEFGFKQYEVSNFGK 232 (351)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 179999999999999999748969797423044699823325678997599999999999976997432444314
No 56
>PRK08807 consensus
Probab=97.49 E-value=0.0064 Score=42.22 Aligned_cols=210 Identities=13% Similarity=0.164 Sum_probs=129.3
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCC-----EEEEECCCCCCCCCCH------HHHHHHHHHHHHH
Q ss_conf 6522353522344678998-88823579999999970775-----1898505445345325------8999999999985
Q gi|254780676|r 93 GAICTRACTFCNVATGKPQ-PLDPQEPENISWAVRSMKLS-----HVVITSVDRDDLDDGG------AQHFAEVISAIRE 160 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~P~-~~D~~EP~rvA~av~~l~Lk-----~vViTSV~RDDL~DgG------A~hfa~~I~~Ir~ 160 (329)
=.-|.+.|.||+-.+-... ..+.+ .-+..-++.|... --.+.||- --|| +..+.+.+..|+.
T Consensus 15 IPFC~~~C~YCdf~s~~~~~~~~~~--~y~~~l~~ei~~~~~~~~~~~~~tiy----~GGGTPs~L~~~~l~~ll~~i~~ 88 (385)
T PRK08807 15 LPWCVRKCPYCDFNSHAAKGALPFD--AYVDALIRDLDADLPLVWGRVVHSVF----FGGGTPSLFPPEAIDRFLQAAAA 88 (385)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCEEEEEE----ECCCHHHHCCHHHHHHHHHHHHH
T ss_conf 0888885899989441078987699--99999999999744550698443899----79955573799999999999999
Q ss_pred HC-----CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECC
Q ss_conf 33-----58689981546234468999874107023320138300-0275638970358999999999970891-67014
Q gi|254780676|r 161 SA-----PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKS 233 (329)
Q Consensus 161 ~~-----P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKS 233 (329)
.. .+++||+ -|+- -+.+.|+.+.++|...++=.+.+-- ..-+.+-..++..+..+.++.++++|.. +. -
T Consensus 89 ~~~~~~~~E~TiE~-nP~~-~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~nin--~ 164 (385)
T PRK08807 89 RLRFAPNLEITLET-NPGT-AEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYDNFN--I 164 (385)
T ss_pred HCCCCCCEEEEEEC-CCCC-CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC--C
T ss_conf 66977671699952-7210-108899999856987588741558999999848999899999999999974997313--0
Q ss_pred CEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHH-CCC-CCCCCCCCCCC-CHHH----HHHHHHHHHHCCCCEEECCCC
Q ss_conf 048876-420688999999999669939975022-278-61007800023-8469----999999999749624340483
Q gi|254780676|r 234 GIMLGL-GETRNEILQLMDDLRTADVDFLTMGQY-LQP-TRKHHKVESFV-TPQD----FKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 234 GlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQY-L~P-s~~h~pV~ryv-~P~e----F~~~~~~a~~~Gf~~V~SgPl 305 (329)
-||.|| |+|.+++.+.++.+.+.+++-|++=++ +.| |+-+..+.+=+ ..++ |+.-.+.-.+.||.+.+-.-+
T Consensus 165 DLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~~lp~~d~~~~~~~~~~~~L~~~Gy~~yeisnf 244 (385)
T PRK08807 165 DLMYALPEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFARPPQGIPDDDAAWDMQEHCQRLLAEAGYAQYEVSAY 244 (385)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 10326999989999999999855599847898888517835754542259967899999999999999739860134200
Q ss_pred CCCCHHH
Q ss_conf 0010318
Q gi|254780676|r 306 TRSSYHA 312 (329)
Q Consensus 306 VRSSY~A 312 (329)
.|..|..
T Consensus 245 ak~g~~~ 251 (385)
T PRK08807 245 ARPGRQC 251 (385)
T ss_pred CCCCCCC
T ss_conf 5898514
No 57
>PRK08949 consensus
Probab=97.49 E-value=0.0057 Score=42.55 Aligned_cols=209 Identities=13% Similarity=0.189 Sum_probs=129.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHC-----CCEEEEECCCCCCCCCCH------HHHHHHHHHHHH
Q ss_conf 652235352234467--8998888235799999999707-----751898505445345325------899999999998
Q gi|254780676|r 93 GAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMK-----LSHVVITSVDRDDLDDGG------AQHFAEVISAIR 159 (329)
Q Consensus 93 G~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~-----Lk~vViTSV~RDDL~DgG------A~hfa~~I~~Ir 159 (329)
=.-|.+.|.||+-.+ .+.... .+ .-+..-++.+. ++.--+.|+- --|| +..+.+.+..|+
T Consensus 13 IPFC~~~C~YCdf~s~~~~~~~~-~~--~Y~~aL~~El~~~~~~~~~~~~~tiy----~GGGTPs~L~~~~l~~ll~~i~ 85 (378)
T PRK08949 13 IPWCVQKCPYCDFNSHALKGEVP-HQ--DYVQHLLADLDADVAYAQGRELHTIF----IGGGTPSLLSAEAMQTLLDGVR 85 (378)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCC-HH--HHHHHHHHHHHHHHHHCCCCEEEEEE----EECCHHHHCCHHHHHHHHHHHH
T ss_conf 08876718999998632888875-99--99999999999865650797687999----7282320079999999999999
Q ss_pred HHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEC
Q ss_conf 5335-----8689981546234468999874107023320138300-0275638970358999999999970891-6701
Q gi|254780676|r 160 ESAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVRPGARYFHSLRLLQRVKELDPL-IFTK 232 (329)
Q Consensus 160 ~~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TK 232 (329)
+..+ +.++|+=.-++ ..+.++.+.++|.+.++=.+.+-. ...+.+-..++..+.++.++.+++.|.+ +.
T Consensus 86 ~~f~~~~~~EiTiE~nP~~~--~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~in-- 161 (378)
T PRK08949 86 ARLPFAADAEITMEANPGTV--EADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFN-- 161 (378)
T ss_pred HHCCCCCCCEEEEECCCCCC--CHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE--
T ss_conf 86798767058995582523--18899999971986699950348989999837999999999999999865996250--
Q ss_pred CCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCCCCCCCCCCHHH----HHHHHHHHHHCCCCEEECCCC
Q ss_conf 4048876-4206889999999996699399750222-78-610078000238469----999999999749624340483
Q gi|254780676|r 233 SGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKHHKVESFVTPQD----FKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 233 SGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h~pV~ryv~P~e----F~~~~~~a~~~Gf~~V~SgPl 305 (329)
--||.|| |.|.+++.+.++.+.+.+++-+++-|+- -| |.-+.........++ |..-.+.-.+.||.+.+-+-+
T Consensus 162 iDLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~lp~~~~~~~~y~~~~~~L~~~Gy~~YEisnf 241 (378)
T PRK08949 162 LDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 23236899989999999999996669983788746864897376467789975999999999999999779981665412
Q ss_pred CCCCHHH
Q ss_conf 0010318
Q gi|254780676|r 306 TRSSYHA 312 (329)
Q Consensus 306 VRSSY~A 312 (329)
.|..|..
T Consensus 242 ak~g~~~ 248 (378)
T PRK08949 242 AKPGYQC 248 (378)
T ss_pred CCCCCCC
T ss_conf 3688754
No 58
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=97.47 E-value=0.0032 Score=44.39 Aligned_cols=180 Identities=19% Similarity=0.316 Sum_probs=109.0
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEECCCCCCC-CCCHHHHHHHHHH-HHHH
Q ss_conf 2699986652235352234467899888823579999999970---775189850544534-5325899999999-9985
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM---KLSHVVITSVDRDDL-DDGGAQHFAEVIS-AIRE 160 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l---~Lk~vViTSV~RDDL-~DgGA~hfa~~I~-~Ir~ 160 (329)
--+.+=--.=|+-+|.||=+++.+. .|+---|++|++-++.+ |.|=.-|||-|---- .|=|..-.++-++ .|-+
T Consensus 144 ~i~i~pI~~GC~~~CsYCi~K~ARG-~L~S~PpEkiV~~ar~l~~~G~kEI~iTs~DT~~YG~DiG~~kLPeLL~~~~t~ 222 (487)
T TIGR01578 144 LIEILPINQGCLGNCSYCITKIARG-KLASYPPEKIVEKARELVAEGAKEIWITSQDTAAYGKDIGERKLPELLRRLITE 222 (487)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7555543666356887546777644-524887225689999999705312651344666344223762127999999862
Q ss_pred HCCCCEEEE--ECCC-CCCCHHHHHHHHHCCCHHHH--HCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 335868998--1546-23446899987410702332--0138300027------56389703589999999999708916
Q gi|254780676|r 161 SAPSTTIEV--LTPD-FLRKPHALEKVVSAKPDVFN--HNLETVASNY------LMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 161 ~~P~~~IEv--LiPD-f~G~~~al~~v~~A~pdV~n--HNiETV~rLy------~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
---+..+=| -=|- -.+-.|-|-.+.+.-+.||+ | +|=-. ...+.++.-++=-++....++.=+++
T Consensus 223 I~g~F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLH----lPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~ 298 (487)
T TIGR01578 223 IPGDFRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLH----LPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDL 298 (487)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 599327876258876334788999999854882000115----4201587588974485652577899999998762686
Q ss_pred EECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC
Q ss_conf 7014048876-42068899999999966993997502227-86
Q gi|254780676|r 230 FTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT 270 (329)
Q Consensus 230 ~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps 270 (329)
.--|=||||. +||+|+-.++|+=|++.--+.|-|.||-+ |.
T Consensus 299 tl~TDiIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~Rpg 341 (487)
T TIGR01578 299 TLSTDIIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPG 341 (487)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 4730016717898835589999999982898345302468888
No 59
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=97.45 E-value=0.0024 Score=45.29 Aligned_cols=210 Identities=13% Similarity=0.190 Sum_probs=127.2
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHC-----CCEEEEECCCCCCCCCC------HHHHHHHHHHHHHH
Q ss_conf 6522353522344678-998888235799999999707-----75189850544534532------58999999999985
Q gi|254780676|r 93 GAICTRACTFCNVATG-KPQPLDPQEPENISWAVRSMK-----LSHVVITSVDRDDLDDG------GAQHFAEVISAIRE 160 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G-~P~~~D~~EP~rvA~av~~l~-----Lk~vViTSV~RDDL~Dg------GA~hfa~~I~~Ir~ 160 (329)
=.-|.+.|.||+-.+- .+...|... =+.--.+++. +.-.-|.||- --| .+..+.+.+..|++
T Consensus 11 IPFC~~~C~YCdf~~~~~~~~~~~~~--Y~~~L~~Ei~~~~~~~~~~~i~tiy----~GGGTPs~L~~~~l~~ll~~l~~ 84 (381)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHAPIDQAR--FAAAFLRELATEAARTGPRTLTSIF----FGGGTPSLMQPETVAALLDAIAR 84 (381)
T ss_pred ECCCCCCCCCCCCCCEECCCCCCHHH--HHHHHHHHHHHHHHHCCCCCEEEEE----ECCCHHHCCCHHHHHHHHHHHHH
T ss_conf 17888828999498701788787999--9999999999999875999357999----79961230999999999999998
Q ss_pred H-----CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 3-----35868998154623446899987410702332013830-00275638970358999999999970891670140
Q gi|254780676|r 161 S-----APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSG 234 (329)
Q Consensus 161 ~-----~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSG 234 (329)
. +.+++||+=.-++ ..+.|+.+.++|...++=-+.+- +..-+.+-..++.++.++.++.+++...++. --
T Consensus 85 ~f~~~~~~EiTiE~nP~~~--~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in--~D 160 (381)
T PRK09057 85 LWPVADDIEITLEANPTSV--EAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVS--FD 160 (381)
T ss_pred HCCCCCCCEEEEECCHHHC--CHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC--HH
T ss_conf 6798657236772374220--1679999997098769896234999999973899989999999999998654512--06
Q ss_pred EEEEE-EECHHHHHHHHHHHHHCCCCEEECCHH-CCCCCC-CC--CCCCCCCHH------HHHHHHHHHHHCCCCEEECC
Q ss_conf 48876-420688999999999669939975022-278610-07--800023846------99999999997496243404
Q gi|254780676|r 235 IMLGL-GETRNEILQLMDDLRTADVDFLTMGQY-LQPTRK-HH--KVESFVTPQ------DFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 235 lMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQY-L~Ps~~-h~--pV~ryv~P~------eF~~~~~~a~~~Gf~~V~Sg 303 (329)
||-|| |+|.+.+.+.++.+.+.+++-|++=++ +.|... .. .-.+...|+ .|+...++-.+.||.+-+-.
T Consensus 161 LiyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~L~~~Gy~~YEiS 240 (381)
T PRK09057 161 LIYARPGQTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEVTAAAGLPAYEIS 240 (381)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 64279889888999999999712777432235664489727878755888999999999999999999996798743246
Q ss_pred CCCCCCHHH
Q ss_conf 830010318
Q gi|254780676|r 304 PLTRSSYHA 312 (329)
Q Consensus 304 PlVRSSY~A 312 (329)
-+.|..|..
T Consensus 241 nfAkpg~~s 249 (381)
T PRK09057 241 NHARPGAES 249 (381)
T ss_pred CCCCCCCHH
T ss_conf 546897321
No 60
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.019 Score=38.87 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCCCC-CCCC--CC-CHHHHHHHHHHHHHH----CCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 652235352234467-8998--88-823579999999970----775--1898505445345325899999999998533
Q gi|254780676|r 93 GAICTRACTFCNVAT-GKPQ--PL-DPQEPENISWAVRSM----KLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESA 162 (329)
Q Consensus 93 G~~CTR~C~FC~V~~-G~P~--~~-D~~EP~rvA~av~~l----~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~ 162 (329)
+--|+.+|.||-... +... .. ......++++.+.+- +-+ ++.|-|++-==+|+.-..-..+-|.+|-...
T Consensus 36 y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~~ 115 (297)
T COG1533 36 YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLKY 115 (297)
T ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 47877888413362014665678605540156999999887524678559998546888856477878999999998853
Q ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 586899815--46234468999874107023320138300-02756389-703589999999999708916701404887
Q gi|254780676|r 163 PSTTIEVLT--PDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 163 P~~~IEvLi--PDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
+..+.++| +=...+.+.|..+.+-+.-.++=-|.|-. ++-+.+=| .++-+.+++.|+.+.++| +. .+++++
T Consensus 116 -~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaG--i~--~~v~v~ 190 (297)
T COG1533 116 -GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAG--IP--VGLFVA 190 (297)
T ss_pred -CCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CE--EEEEEE
T ss_conf -9967999777410102789984011265189999516848889865899969899999999999879--84--899985
Q ss_pred ---EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---6420688999999999669939975022278610078000238469999999999
Q gi|254780676|r 239 ---LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 239 ---LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~ 293 (329)
-|.+|+|+.+.+.+..++|+..+.-+ +|.=...-++.-+-+-...+..+...-.
T Consensus 191 PIiP~~~d~e~e~~l~~~~~ag~~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (297)
T COG1533 191 PIIPGLNDEELERILEAAAEAGARVVVYG-TLRLRLDILRRFKEYLKRIEPERYRLYL 247 (297)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53078875889999999997577413631-3304577899999988875103576665
No 61
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=97.22 E-value=0.031 Score=37.42 Aligned_cols=176 Identities=19% Similarity=0.333 Sum_probs=131.3
Q ss_pred EEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCEEEE----ECCCCCCCC-----CCHH---HHHHHH
Q ss_conf 9986652235352234467--8998888235799999999707751898----505445345-----3258---999999
Q gi|254780676|r 89 FMILGAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKLSHVVI----TSVDRDDLD-----DGGA---QHFAEV 154 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~Lk~vVi----TSV~RDDL~-----DgGA---~hfa~~ 154 (329)
++=--+=|-|+|.||.+.+ |+-..-+.++-.+=|+....-|.|=..| ||-===||. -.|. .+.++-
T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~~~L~~L 246 (475)
T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVKSKLVEL 246 (475)
T ss_pred EEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 68700577898652136233677677688889999999984398389999640347764111105522401457899999
Q ss_pred HHHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHCCCHHH-------HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999985335--86899815462344689998741070233-------201383000275638970358999999999970
Q gi|254780676|r 155 ISAIRESAP--STTIEVLTPDFLRKPHALEKVVSAKPDVF-------NHNLETVASNYLMVRPGARYFHSLRLLQRVKEL 225 (329)
Q Consensus 155 I~~Ir~~~P--~~~IEvLiPDf~G~~~al~~v~~A~pdV~-------nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~ 225 (329)
.+++.+.+- =+.+==|=|| +-.+.+=-++..+|.|+ =| ..+|.-+..|.+.+-++-+++|+..|+.
T Consensus 247 l~~L~k~~G~~WiR~~YlYP~--~~~~~vI~~m~~~~KvLPYlDiPLQH---~sd~ILK~M~R~~~~~~~~~~i~~~R~~ 321 (475)
T TIGR01125 247 LEELGKLGGIYWIRLLYLYPD--ELTDDVIDLMAEGPKVLPYLDIPLQH---ASDRILKLMRRPGSGEEQLDLIERLREK 321 (475)
T ss_pred HHHHHHCCCCCEEEEEEECCC--CCCHHHHHHHHCCCCCCCEECCCCCC---CCHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 997400589622788876088--88667889986389805122543123---8737874278996388999999999975
Q ss_pred CCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf 89167014048876-420688999999999669939975022278
Q gi|254780676|r 226 DPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329)
Q Consensus 226 ~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329)
-|++.--|.+|||. |||+||--++++=+.++.-|-|=+=.|=+=
T Consensus 322 ~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~e 366 (475)
T TIGR01125 322 VPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPE 366 (475)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 566177224688688998788999999985202150000207832
No 62
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=96.94 E-value=0.0097 Score=40.93 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=128.2
Q ss_pred HHHCCCCEEE--EEECCCCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 7508972699--9866522353522344678998---888235799999999707-751898505445345325899999
Q gi|254780676|r 80 ECWNKNHATF--MILGAICTRACTFCNVATGKPQ---PLDPQEPENISWAVRSMK-LSHVVITSVDRDDLDDGGAQHFAE 153 (329)
Q Consensus 80 ECw~~gtATF--MilG~~CTR~C~FC~V~~G~P~---~~D~~EP~rvA~av~~l~-Lk~vViTSV~RDDL~DgGA~hfa~ 153 (329)
+-|+.---=| |=|-|.|+=.|-||--...++- -|+.+|-.+=.+||+++| ++|+-|-|= -.-.--|..=|++
T Consensus 67 ~rFG~ti~Lf~PLYlSN~C~N~C~YCGF~~~NKIkR~~Ln~~Ei~~E~~aI~k~gPf~~iLlvtG--E~e~~~g~~Yi~~ 144 (378)
T TIGR02351 67 KRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGPFKEILLVTG--ESEKAAGVEYIEE 144 (378)
T ss_pred HHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHEEEECC--CCCCCCCHHHHHH
T ss_conf 76378100013345654148752104657867302004888899999999862077013001115--7775588378999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCC---CCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 99999853358689981546234468999874107023320138300-0275638---9703589999999999708916
Q gi|254780676|r 154 VISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVR---PGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 154 ~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i 229 (329)
.|+-||++-+.++|||--= +.|.=+.|..+|.|-.-===||-- .-|+.+- ...+|..+|+.=.++-++|-+=
T Consensus 145 ~~~l~k~~F~~l~iEv~Pl----~~eeYk~L~~~Gld~V~VyQETYn~~~Y~~~H~~G~K~~F~yRl~tpeR~a~AG~~k 220 (378)
T TIGR02351 145 AIKLAKEYFSSLAIEVQPL----TEEEYKKLKEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLETPERIAKAGMRK 220 (378)
T ss_pred HHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCE
T ss_conf 9999875278544887307----704568897708881588765167421544376668776441056046786618740
Q ss_pred EECCCEEEEEEE-CHHHHHHHHHHHH
Q ss_conf 701404887642-0688999999999
Q gi|254780676|r 230 FTKSGIMLGLGE-TRNEILQLMDDLR 254 (329)
Q Consensus 230 ~TKSGlMvGLGE-t~eEi~e~l~DLr 254 (329)
. ==|..|||-| =.-|.+-++.-|+
T Consensus 221 I-g~GaLlGL~dnwR~Da~~~a~H~~ 245 (378)
T TIGR02351 221 I-GIGALLGLEDNWRTDAFFTAYHLR 245 (378)
T ss_pred E-HHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 2-125343012242289999999999
No 63
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=96.94 E-value=0.035 Score=36.99 Aligned_cols=169 Identities=20% Similarity=0.281 Sum_probs=107.3
Q ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCC---CC-CCCCCHHHHH---HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 508972699986652235352234467---89-9888823579---9999999707751898505445345325899999
Q gi|254780676|r 81 CWNKNHATFMILGAICTRACTFCNVAT---GK-PQPLDPQEPE---NISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAE 153 (329)
Q Consensus 81 Cw~~gtATFMilG~~CTR~C~FC~V~~---G~-P~~~D~~EP~---rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~ 153 (329)
|.-++-.-.-+ -..|-|+|-||-|.. |+ +--.+.-+-. -+-+-++.|+-.=+-||.-+ |=--..-..+
T Consensus 24 C~~G~KlVlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGd----Pl~~ieR~~~ 98 (353)
T COG2108 24 CVLGGKLVLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGD----PLLEIERTVE 98 (353)
T ss_pred HHCCCCEEEEE-ECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC----HHHHHHHHHH
T ss_conf 72587169999-556689852576877764886331156314757889999997246665332787----4899999999
Q ss_pred HHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCEEEE
Q ss_conf 999998533-586899815462344689998741070233201383000275638970358-999999999970891670
Q gi|254780676|r 154 VISAIRESA-PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYF-HSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 154 ~I~~Ir~~~-P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~-rSL~vL~~aK~~~~~i~T 231 (329)
.|+..|..- -+.-|-+-++.-..+.+.|+.+.+||.|=+ |+.|. +|++.+. +-++.|+.||+.+.++
T Consensus 99 ~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEI--------RfHp~-~~~~~~~e~~i~~l~~A~~~g~dv-- 167 (353)
T COG2108 99 YIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEI--------RFHPP-RPGSKSSEKYIENLKIAKKYGMDV-- 167 (353)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEE--------EECCC-CCCCCCCHHHHHHHHHHHHHCCCC--
T ss_conf 9999987635320599840665688899999986798759--------94689-721123189999999999828551--
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf 14048876420688999999999669939975022
Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329)
Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329)
-.=|=.+-.-++.+++..+-+-+.|.|++.|.+.
T Consensus 168 -G~EiPaipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 168 -GVEIPAIPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred -EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf -0432788656889999999987606653421004
No 64
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=96.92 E-value=0.057 Score=35.51 Aligned_cols=214 Identities=13% Similarity=0.193 Sum_probs=136.3
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHH------HHHHHHHHHHHCCCEEEEECCCC-----CCCCCCHHHHHHHHH
Q ss_conf 6999866522353522344678998888235------79999999970775189850544-----534532589999999
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQE------PENISWAVRSMKLSHVVITSVDR-----DDLDDGGAQHFAEVI 155 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~E------P~rvA~av~~l~Lk~vViTSV~R-----DDL~DgGA~hfa~~I 155 (329)
...-|-=.-|.+.|.||+..+-.-..-++.+ .+.++......+.+ -.|.+|-- -=| .+..+...+
T Consensus 35 ~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~-~~v~ti~~GGGTPslL---~~~~l~~ll 110 (416)
T COG0635 35 LSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQ-REVKTIYFGGGTPSLL---SPEQLERLL 110 (416)
T ss_pred CEEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCC---CHHHHHHHH
T ss_conf 368887232125088788854534777739999999999999988622788-7278999769832677---999999999
Q ss_pred HHHHHHC------CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 9998533------5868998154623446899987410702332013830-00275638970358999999999970891
Q gi|254780676|r 156 SAIRESA------PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL 228 (329)
Q Consensus 156 ~~Ir~~~------P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~ 228 (329)
..|++.- -+++||+ -|. .=..+-++.+.++|...++=++-+- ++..+.+...++.+.....+..+++.+..
T Consensus 111 ~~l~~~~~~~~~~~EitiE~-nP~-~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~ 188 (416)
T COG0635 111 KALRELFNDLDPDAEITIEA-NPG-TVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFT 188 (416)
T ss_pred HHHHHHHCCCCCCCEEEEEE-CCC-CCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999723578882799950-888-6689999999982987798601459989999747888789999999999863897
Q ss_pred EEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCC--CCCCH-H----HHHHHHHHHHHCCCC
Q ss_conf 67014048876-42068899999999966993997502227-8-61007800--02384-6----999999999974962
Q gi|254780676|r 229 IFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVE--SFVTP-Q----DFKSYETIAYSKGFL 298 (329)
Q Consensus 229 i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~--ryv~P-~----eF~~~~~~a~~~Gf~ 298 (329)
-. ---||-|| |.|.+++.++++.+.+.+.|-|++=||-- | ++.+--.. ++.+. + .|+...+.-.+.||.
T Consensus 189 ~i-n~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 189 SI-NIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred CE-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 47-88724389999999999999999834998786462686588567662335778998689999999999999977964
Q ss_pred EEECCCCCC
Q ss_conf 434048300
Q gi|254780676|r 299 MVSASPLTR 307 (329)
Q Consensus 299 ~V~SgPlVR 307 (329)
+..=.-+.|
T Consensus 268 ~yeisnfa~ 276 (416)
T COG0635 268 QYEISNFAK 276 (416)
T ss_pred HEECHHHCC
T ss_conf 106123127
No 65
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=96.53 E-value=0.026 Score=37.94 Aligned_cols=201 Identities=15% Similarity=0.210 Sum_probs=106.0
Q ss_pred CEEEEEEC--CCCCCCCCCCCCCCCCC-CCC-----CHHHH-HHHHHHHHHHC-----CCEEEEECCCCCCCCCCHHHHH
Q ss_conf 26999866--52235352234467899-888-----82357-99999999707-----7518985054453453258999
Q gi|254780676|r 86 HATFMILG--AICTRACTFCNVATGKP-QPL-----DPQEP-ENISWAVRSMK-----LSHVVITSVDRDDLDDGGAQHF 151 (329)
Q Consensus 86 tATFMilG--~~CTR~C~FC~V~~G~P-~~~-----D~~EP-~rvA~av~~l~-----Lk~vViTSV~RDDL~DgGA~hf 151 (329)
|--|++.+ +.|+-.|.||.-+.+.- .|+ --++| .++++-.+.+. .+-+-|--+ ++|-.+-. .
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i---~~p~~~~d-~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQI---AYPRALND-L 104 (339)
T ss_pred CEEEEEEECCCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEE---CCCCCCCH-H
T ss_conf 0566566227856646554735552345887503663266200078777676665402144411000---25542301-6
Q ss_pred HHHHHHHH-HHCCCCEE-EEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCC----CCCHHHHHHHHHHHHHH
Q ss_conf 99999998-53358689-98154623446899987410702332013830-00275638----97035899999999997
Q gi|254780676|r 152 AEVISAIR-ESAPSTTI-EVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVR----PGARYFHSLRLLQRVKE 224 (329)
Q Consensus 152 a~~I~~Ir-~~~P~~~I-EvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VR----p~a~Y~rSL~vL~~aK~ 224 (329)
..+++.++ ...-.++| |++++- .- .+-|..-...+.|++.--++-+ +.+|..|| .-++|+|-+..|..+-+
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~-~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAV-SL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred HHHHHHHHHCCCCCEEHHHHHHCC-CC-HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 664366510247850120233024-51-6878998854235535788750777899987415898718889999999999
Q ss_pred CCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE--EECCH---HCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 089167014048876420688999999999669939--97502---227861007800023846999999999
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF--LTMGQ---YLQPTRKHHKVESFVTPQDFKSYETIA 292 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi--lTiGQ---YL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329)
+-.+-..--+++|||||++.+++++|.-.+.-|-.+ .-.+- -.-+.++--||.+|..-..|..+=..|
T Consensus 183 ~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~yli~~G 255 (339)
T COG2516 183 AFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRKIQVARYLIGNG 255 (339)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8546774515796048756899999999985586489998646556644578998689999999999997348
No 66
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.47 E-value=0.11 Score=33.37 Aligned_cols=217 Identities=16% Similarity=0.230 Sum_probs=129.4
Q ss_pred CCCCCCHHHH----HCCCCEEEEEECC-CCCCCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 5788787675----0897269998665-22353522344678998-------8882357999999997077518985054
Q gi|254780676|r 72 EAGCPNIGEC----WNKNHATFMILGA-ICTRACTFCNVATGKPQ-------PLDPQEPENISWAVRSMKLSHVVITSVD 139 (329)
Q Consensus 72 eA~CPNi~EC----w~~gtATFMilG~-~CTR~C~FC~V~~G~P~-------~~D~~EP~rvA~av~~l~Lk~vViTSV~ 139 (329)
|+.-|-||.- -.+||--+-+-|. .|--+|-||+|+-|--. -+|++--..--+-|.+..=+-+-.
T Consensus 88 eg~iPliG~~AFGlIdRGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEa---- 163 (414)
T COG2100 88 EGMIPLIGHTAFGLIDRGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEA---- 163 (414)
T ss_pred CCCCCEECCEEEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCEEECHHHHHHHHHHHHHHHCCCEEE----
T ss_conf 6866400210445771685179964776643205898525786433002561756899999999999640787278----
Q ss_pred CCCCCCCH-----HHHHHHHHHHHHHHCCCCEE-EEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHH
Q ss_conf 45345325-----89999999999853358689-98154623446899987410702332013830-0027563897035
Q gi|254780676|r 140 RDDLDDGG-----AQHFAEVISAIRESAPSTTI-EVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARY 212 (329)
Q Consensus 140 RDDL~DgG-----A~hfa~~I~~Ir~~~P~~~I-EvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y 212 (329)
.-||- --|.++.|++.++. |++.| -+-+-...=+.+.++.+.+||.|.||--+..- |++-+..--.-+|
T Consensus 164 ---HlDGqGEP~lYP~l~~lVqalk~~-~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dY 239 (414)
T COG2100 164 ---HLDGQGEPLLYPHLVDLVQALKEH-KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDY 239 (414)
T ss_pred ---EECCCCCCCCCHHHHHHHHHHHCC-CCCEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCC
T ss_conf ---753788875453399999997438-9842899850764445999999997087558862023798898774284011
Q ss_pred H--HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC----CEEECCHHCCCCCCCCC-CCCCCCHHHH
Q ss_conf 8--999999999970891670140488764206889999999996699----39975022278610078-0002384699
Q gi|254780676|r 213 F--HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV----DFLTMGQYLQPTRKHHK-VESFVTPQDF 285 (329)
Q Consensus 213 ~--rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv----dilTiGQYL~Ps~~h~p-V~ryv~P~eF 285 (329)
+ +-|++.+++.+.+-+++.--=++- |=.++|+...+.=-++.|. -.++|-.|..---.--| +.+-++-.||
T Consensus 240 dv~kvle~aE~i~~a~idvlIaPv~lP--G~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeF 317 (414)
T COG2100 240 DVKKVLEVAEYIANAGIDVLIAPVWLP--GVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEF 317 (414)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 789999999999867988898314427--868177899999999848887799853077554020688630355759999
Q ss_pred HHH-HHHHHHCCCC
Q ss_conf 999-9999974962
Q gi|254780676|r 286 KSY-ETIAYSKGFL 298 (329)
Q Consensus 286 ~~~-~~~a~~~Gf~ 298 (329)
-.| +++-.+.|.+
T Consensus 318 YrwLrelEketg~k 331 (414)
T COG2100 318 YRWLRELEKETGVK 331 (414)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999973988
No 67
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.41 E-value=0.12 Score=33.11 Aligned_cols=182 Identities=16% Similarity=0.233 Sum_probs=127.9
Q ss_pred ECCCCCCCCCCCCCCCC---C------CCCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 66522353522344678---9------9888823579999999970775189850---5445345325899999999998
Q gi|254780676|r 92 LGAICTRACTFCNVATG---K------PQPLDPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G---~------P~~~D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir 159 (329)
+=|.|==+|.||--..+ . +..|..+|-.|++++...+|++-|=||. -=|-| +..-|++|+
T Consensus 16 vTDRCNlRC~YCMP~~~FG~~~~f~~~~~~Lt~eEi~rl~~~~v~~Gv~KvRlTGGEPLlR~~--------l~~lv~~~~ 87 (346)
T TIGR02666 16 VTDRCNLRCVYCMPEEGFGEGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--------LVELVARLA 87 (346)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--------HHHHHHHHH
T ss_conf 616478724666886567887667875566898999999999997497168752777441367--------589999998
Q ss_pred HHCCCC--EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCE
Q ss_conf 533586--89981546234468999874107023320138300-0275638-9703589999999999708916701404
Q gi|254780676|r 160 ESAPST--TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA-SNYLMVR-PGARYFHSLRLLQRVKELDPLIFTKSGI 235 (329)
Q Consensus 160 ~~~P~~--~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~-rLy~~VR-p~a~Y~rSL~vL~~aK~~~~~i~TKSGl 235 (329)
+...-- .|=+=|=.+ .=...++.|.+||.+.+|==|.|-. ..|..|. .+.+.++=|+-+..|+++|.. ..|=..
T Consensus 88 ~~~g~~~~di~lTTNG~-~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~-~vKlN~ 165 (346)
T TIGR02666 88 ALPGIEIEDIALTTNGL-LLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLK-PVKLNT 165 (346)
T ss_pred HCCCCCCCEEEECCCHH-HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf 42785433554100522-3588999999718880365401488899999857899888999999999965998-314766
Q ss_pred EEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC-CC-CCCCCCCCCCHHH
Q ss_conf 8876420688999999999669939975022278-61-0078000238469
Q gi|254780676|r 236 MLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP-TR-KHHKVESFVTPQD 284 (329)
Q Consensus 236 MvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P-s~-~h~pV~ryv~P~e 284 (329)
-|==|=.++||.+.++=-++.+++|==|= |+.= .. .++.=.++++-+|
T Consensus 166 V~~~G~Nd~Ei~~l~~~~~~~~~~lRFIE-~MP~G~~~~~~~~~~~~~~~~ 215 (346)
T TIGR02666 166 VVLRGVNDDEIVDLAEFAKERGVTLRFIE-LMPLGEGGNGWRGKEFVSADE 215 (346)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCCCCCCCCCHHH
T ss_conf 76278897789999999975796078875-154676300000034535899
No 68
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.39 E-value=0.1 Score=33.67 Aligned_cols=224 Identities=19% Similarity=0.274 Sum_probs=127.8
Q ss_pred HHHHHHHHHHH--CCCCEEECCCCCCCHHH-----HHCCCC---E-EEEEEC-------------CCCCCCCCCCC---C
Q ss_conf 68999999997--49823652578878767-----508972---6-999866-------------52235352234---4
Q gi|254780676|r 53 GYKETYNILRS--RNLTTVCEEAGCPNIGE-----CWNKNH---A-TFMILG-------------AICTRACTFCN---V 105 (329)
Q Consensus 53 ~~~~~~~~l~~--~~L~TVCeeA~CPNi~E-----Cw~~gt---A-TFMilG-------------~~CTR~C~FC~---V 105 (329)
++.+++..+-. ++=-|.|+---=-|+.+ |--.-+ | -|+-+| .-||=+|-||+ +
T Consensus 61 ~lldlK~eia~~~Le~C~lCerrCgVnR~~~~kG~C~v~~~~~vas~flH~GEE~~LvpSgTVFFsgCnfrCVfCQNwdI 140 (335)
T COG1313 61 SLLDLKVEIAYRILEKCTLCERRCGVNRLEGEKGFCRVKEKPYVASEFLHFGEEPPLVPSGTVFFSGCNFRCVFCQNWDI 140 (335)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC
T ss_conf 78888999999885136746300462533477762116760023102222576776568740796476058997557652
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-----------------CEE
Q ss_conf -67899888823579999999970775189850544534532589999999999853358-----------------689
Q gi|254780676|r 106 -ATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS-----------------TTI 167 (329)
Q Consensus 106 -~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~-----------------~~I 167 (329)
..|....+++++-.++-.-.+.+|.+-|-.-+-+ |..-.-.+.++++...+..|- --|
T Consensus 141 Sq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~----Ptp~lp~Ile~l~~~~~~iPvvwNSnmY~s~E~l~lL~gvV 216 (335)
T COG1313 141 SQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGD----PTPHLPFILEALRYASENIPVVWNSNMYMSEETLKLLDGVV 216 (335)
T ss_pred CCCCCCEEECHHHHHHHHHHHHHHCCCCEEECCCC----CCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCC
T ss_conf 33678807569999999999998257621005899----98753899999999742798797068744899999862602
Q ss_pred EEECCCCC-CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC-HHH
Q ss_conf 98154623-4468999874107023320138300027563897035899999999997089167014048876420-688
Q gi|254780676|r 168 EVLTPDFL-RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET-RNE 245 (329)
Q Consensus 168 EvLiPDf~-G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt-~eE 245 (329)
.+-.|||+ ||.++-.+... |++... |- +=+.+....+.| ++...-=.|=|.=|. -..
T Consensus 217 DiyL~DfKYgNdeca~kySk------------vp~Y~e-Vv-------~rn~~~~~~~~g-~~iiRHLVlPghlecCTkp 275 (335)
T COG1313 217 DIYLPDFKYGNDECAEKYSK------------VPNYWE-VV-------TRNILEAKEQVG-GLIIRHLVLPGHLECCTKP 275 (335)
T ss_pred EEEECCCCCCCHHHHHHHHC------------CCCHHH-HH-------HHHHHHHHHHCC-CEEEEEEECCCCHHHCCHH
T ss_conf 04304324688899998605------------894689-98-------899999997427-6588887348842232589
Q ss_pred HHHHHHHHHHCCCCEEECCHHCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999999669939975022278--61007800023846999999999974962434
Q gi|254780676|r 246 ILQLMDDLRTADVDFLTMGQYLQP--TRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 246 i~e~l~DLr~~gvdilTiGQYL~P--s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
|++-+.......+-+=-..||-.- ..+.-.+.|..+.+|.++--++|.++||....
T Consensus 276 I~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 276 ILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred HHHHHHHHCCCCEEEEEHHHCCCHHHHHHCHHHCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999997589870587532216235544244433658999999999999974974021
No 69
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=95.99 E-value=0.02 Score=38.66 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=98.7
Q ss_pred CCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH---------HHHHHHHHHCCCEEEE-----E
Q ss_conf 2578878767508972699986652235352234467899888823579---------9999999707751898-----5
Q gi|254780676|r 71 EEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPE---------NISWAVRSMKLSHVVI-----T 136 (329)
Q Consensus 71 eeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~---------rvA~av~~l~Lk~vVi-----T 136 (329)
--=.|||+- |-+--=+|-||++.++ |.-.++.-+. +-++-.++-|+++=.+ |
T Consensus 24 gGF~CPNRD-------------GT~G~GGCtfC~~a~~-~~f~~~~~~~~~~~~~~i~~~~~~~~k~G~kkf~aYFQ~yT 89 (307)
T TIGR01212 24 GGFSCPNRD-------------GTIGRGGCTFCNDASK-PSFADEVTQARIPIKEQIKKRKKKYKKDGIKKFIAYFQAYT 89 (307)
T ss_pred CCCCCCCCC-------------CCCCCCCEEECCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 578877888-------------7002577252178888-85245102354468999999997653157315789973887
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCC-------CEEEE-----ECCCCCCCHHHHHHHHHCCCHHHH------HCCCC
Q ss_conf 0544534532589999999999853358-------68998-----154623446899987410702332------01383
Q gi|254780676|r 137 SVDRDDLDDGGAQHFAEVISAIRESAPS-------TTIEV-----LTPDFLRKPHALEKVVSAKPDVFN------HNLET 198 (329)
Q Consensus 137 SV~RDDL~DgGA~hfa~~I~~Ir~~~P~-------~~IEv-----LiPDf~G~~~al~~v~~A~pdV~n------HNiET 198 (329)
| -||. |+.+|+..-. +.+-| ++|| .-.|.|....+-|-||-= =|-+|
T Consensus 90 n------------TYAp-ve~Lk~~y~~aL~~~~vVGlsvgTRPDC~P~--~VLDlL~ey~~~GyevWvELGLQtah~~T 154 (307)
T TIGR01212 90 N------------TYAP-VEVLKEMYEQALSEDDVVGLSVGTRPDCVPD--EVLDLLAEYKERGYEVWVELGLQTAHDRT 154 (307)
T ss_pred C------------CCHH-HHHHHHHHHHHHHHCCEEEEEECCCCCCCHH--HHHHHHHHHHHCCEEEEEECCCCCHHHHH
T ss_conf 6------------5002-6888899998763278057753688987747--89999999954975899960535655899
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 00027563897035899999999997089167014048876-420688999999999669939975
Q gi|254780676|r 199 VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 199 V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTi 263 (329)
- ..|=.+|+...=.+....+|+.|..+| |=+|+|| ||+++|+++|++-|.+++||=+=|
T Consensus 155 L----~~INRgHd~~~y~~a~~~~~krGikVC--~H~I~GLPgE~~~~~~eTak~~~~l~vdGiKi 214 (307)
T TIGR01212 155 L----KKINRGHDFACYVDAVKRARKRGIKVC--SHVILGLPGEDREEMLETAKIVASLDVDGIKI 214 (307)
T ss_pred H----HHHCCCCCHHHHHHHHHHHHHCCCEEE--EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9----985143787899999999976598899--99874289888889999999998379884887
No 70
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.97 E-value=0.2 Score=31.60 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=132.6
Q ss_pred ECCCCCCCCCCCCCC-----CCCC----CCCCHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 665223535223446-----7899----888823579999999970775189850---5445345325899999999998
Q gi|254780676|r 92 LGAICTRACTFCNVA-----TGKP----QPLDPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 92 lG~~CTR~C~FC~V~-----~G~P----~~~D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir 159 (329)
+-+.|==+|=||.=. ++++ ..+-++|-.+|+++.+++|.+-|=||. -=|.||. +.|+.|+
T Consensus 16 ~T~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~eei~~~~~~a~~fGV~kvKlTGGEPlLR~D~~--------~Ii~~~~ 87 (324)
T TIGR02668 16 VTDECNLSCFYCHREGEDESRGRQGPGGNELSPEEIERIVRVASEFGVRKVKLTGGEPLLRKDLI--------EIIRRIK 87 (324)
T ss_pred ECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH--------HHHHHHC
T ss_conf 73423864221036788888888888644558999999999998708832775178743456699--------9998614
Q ss_pred HHCCCCEE-EE-ECCCCCC--CHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCC--CCCHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 53358689-98-1546234--46899987410702332013830-00275638--9703589999999999708916701
Q gi|254780676|r 160 ESAPSTTI-EV-LTPDFLR--KPHALEKVVSAKPDVFNHNLETV-ASNYLMVR--PGARYFHSLRLLQRVKELDPLIFTK 232 (329)
Q Consensus 160 ~~~P~~~I-Ev-LiPDf~G--~~~al~~v~~A~pdV~nHNiETV-~rLy~~VR--p~a~Y~rSL~vL~~aK~~~~~i~TK 232 (329)
+..+ || || -.| -....++|.+||+|..|==|.|+ +..|+.|. +...+++=|+=++.|-++|.. +.|
T Consensus 88 ----~~~~~~vSmT--TNG~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~-PVK 160 (324)
T TIGR02668 88 ----DYGIKDVSMT--TNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLT-PVK 160 (324)
T ss_pred ----CCCCEEEECC--CCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-CEE
T ss_conf ----6750344203--031448989999998285613120267886788864489986078999999999972898-137
Q ss_pred CCEEEEEEECHHH-HHHHHHHHHH-CCCCEEECCHHCCCCCCC--CCCCCCCCH
Q ss_conf 4048876420688-9999999996-699399750222786100--780002384
Q gi|254780676|r 233 SGIMLGLGETRNE-ILQLMDDLRT-ADVDFLTMGQYLQPTRKH--HKVESFVTP 282 (329)
Q Consensus 233 SGlMvGLGEt~eE-i~e~l~DLr~-~gvdilTiGQYL~Ps~~h--~pV~ryv~P 282 (329)
=.+.|==|.+.+| |-++|+=.++ -+..+|-|=-|..+...+ --..+|.-|
T Consensus 161 lN~Vvl~G~N~~~~~~~m~~f~~~~~~g~~LQlIEl~~~~~G~~s~~~~~y~~d 214 (324)
T TIGR02668 161 LNMVVLKGINDNEEIPDMVEFAADYEGGAILQLIELMPPGEGENSKELKKYHID 214 (324)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf 888875477885007999999987515936898611268888872211423177
No 71
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=95.87 E-value=0.17 Score=32.08 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE-C-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHH
Q ss_conf 988882357999999997077518985-0-5445345325899999999998533586899815-462344689998741
Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVIT-S-VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT-PDFLRKPHALEKVVS 186 (329)
Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViT-S-V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi-PDf~G~~~al~~v~~ 186 (329)
+..+..+|-.+++++..++|++++-++ | |.-+| ...++.+.+..|++.+..+. +...-+..+++...+
T Consensus 8 ~~~~~~e~K~~i~~~L~~~Gv~~IEvg~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (237)
T pfam00682 8 GAAFSVEEKLAIARALDEAGVDEIEVGFPFMSPTD---------FESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKG 78 (237)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCH---------HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 99989999999999999849898999577589735---------999997765025875101000341049999999996
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf 070233201383000275638970358----9999999999708916701404887642068899999999966993997
Q gi|254780676|r 187 AKPDVFNHNLETVASNYLMVRPGARYF----HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329)
Q Consensus 187 A~pdV~nHNiETV~rLy~~VRp~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329)
++.+.++=-+-+.+.+.... -+.+.+ +..++++++|+.+..+. -|.+-+--=+.+.+.+.++.+.+.|+|.+.
T Consensus 79 ~g~~~i~i~~~~se~~~~~n-~~~s~~~~l~~~~~~i~~a~~~g~~v~--f~~~~~~~~~~~~~~~~~~~~~~~G~~~i~ 155 (237)
T pfam00682 79 AGADRVHVFIATSDLHRKYK-LNKDREEVADRAVAAVEAARSAGIDVE--LGCEDAGRTDLAFLIEVVEVAQEAGATRIN 155 (237)
T ss_pred CCCCEEEEEEECCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 79999999610578789988-578999999999999999998699058--840512324788999999999861985797
Q ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 502227861007800023846999999999
Q gi|254780676|r 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 (329)
Q Consensus 263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329)
|.- -.-+.+|++..++=..-
T Consensus 156 l~D----------T~G~~~P~~v~~lv~~l 175 (237)
T pfam00682 156 IAD----------TVGVLTPNEAADLISAL 175 (237)
T ss_pred ECC----------CCCCCCHHHHHHHHHHH
T ss_conf 368----------64557989999999999
No 72
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=95.85 E-value=0.23 Score=31.28 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=121.8
Q ss_pred ECCCCCCCCCCCCCCC---CCCC--CCCHHHHHHHHHHHHHHCCCEEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 6652235352234467---8998--88823579999999970775189850---54453453258999999999985335
Q gi|254780676|r 92 LGAICTRACTFCNVAT---GKPQ--PLDPQEPENISWAVRSMKLSHVVITS---VDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~---G~P~--~~D~~EP~rvA~av~~l~Lk~vViTS---V~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
+-|.|-=+|.||--.- -.|. .+-++|-.+++.+...+|.+-|=||. -=|-| +.+.|+.|+..
T Consensus 17 vTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--------l~eIi~~l~~~-- 86 (322)
T COG2896 17 VTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--------LDEIIARLARL-- 86 (322)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC--------HHHHHHHHHHC--
T ss_conf 82673774644688886566765454899999999999997396458971898313327--------99999987434--
Q ss_pred CCEEEE-ECCCCCC--CHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 868998-1546234--468999874107023320138300-027563897035899999999997089167014048876
Q gi|254780676|r 164 STTIEV-LTPDFLR--KPHALEKVVSAKPDVFNHNLETVA-SNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL 239 (329)
Q Consensus 164 ~~~IEv-LiPDf~G--~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL 239 (329)
+ .-++ |+. .| -....+.+.+||.+.+|=-++|.. ..|..|-....+++-|+-++.|.++|.. ..|=..-|==
T Consensus 87 ~-~~~islTT--NG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~-pVKlN~Vv~k 162 (322)
T COG2896 87 G-IRDLSLTT--NGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLT-PVKLNTVLMK 162 (322)
T ss_pred C-CCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CEEEEEEEEC
T ss_conf 6-44288744--567679999999975986899503449989999886789299999999999976998-5578889846
Q ss_pred EECHHHHHHHHHHHHHCCCCEEECCHHCCCC-CCCCCCCCCCCHHHH
Q ss_conf 4206889999999996699399750222786-100780002384699
Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTMGQYLQPT-RKHHKVESFVTPQDF 285 (329)
Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps-~~h~pV~ryv~P~eF 285 (329)
|=.++||.+.++=.++.|.+ |.+=-|+... ..++....|++-++-
T Consensus 163 gvNd~ei~~l~e~~~~~~~~-lrfIE~m~~g~~~~~~~~~~~~~~~i 208 (322)
T COG2896 163 GVNDDEIEDLLEFAKERGAQ-LRFIELMPLGEGNSWRLDKYLSLDEI 208 (322)
T ss_pred CCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCHHHHCCCCHHHH
T ss_conf 98878999999998526984-47999866686540344044549999
No 73
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=95.83 E-value=0.23 Score=31.22 Aligned_cols=207 Identities=13% Similarity=0.138 Sum_probs=109.7
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH------HHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2699986652235352234467899888823579999999------970775--18985054453453258999999999
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAV------RSMKLS--HVVITSVDRDDLDDGGAQHFAEVISA 157 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av------~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~ 157 (329)
.-..-|-=.-|.+.|.||+-.+-... -+.-+ .=+..-+ +..+.+ .+-+-.=|=-=|+ ..+.+.+..
T Consensus 43 ~~~LYiHIPFC~~~C~YC~F~~~~~~-~~~~~-~Y~~aL~kEi~~~~~~~~~i~tiy~GGGTPs~L~----~~l~~~l~~ 116 (424)
T PRK08629 43 KYMLYAHVPFCHTLCPYCSFHRFLFK-EDKAR-AYFISLRKEMEMVKELGYDFESMYVGGGTTTILE----DELAKTLEL 116 (424)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCC-CCHHH-HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCH----HHHHHHHHH
T ss_conf 56899890540798889989582688-24199-9999999999998853998376997797122579----999999999
Q ss_pred HHHHCC--CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCC---HHHHHHHHHHHHHHCCCEEEE
Q ss_conf 985335--868998154623446899987410702332013830-00275638970---358999999999970891670
Q gi|254780676|r 158 IRESAP--STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGA---RYFHSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 158 Ir~~~P--~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a---~Y~rSL~vL~~aK~~~~~i~T 231 (329)
+++.-+ +++||+=.-++ +.+.++.+. ++...++=.+.+. +...+.+-..+ +-.+.++.++.+++.-.+|.
T Consensus 117 ~~~~f~~~EiTiE~nP~~~--~~~~l~~l~-~~vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~f~nin- 192 (424)
T PRK08629 117 AKKLFSIKEVSCESDPNHL--DPPGLKQLK-GLIDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGLFPIIN- 192 (424)
T ss_pred HHHHCCCCEEEEECCCCCC--CHHHHHHHH-HHCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEE-
T ss_conf 9864898249995386868--999999998-642516662366998899980999985469999999999763446253-
Q ss_pred CCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 14048876-42068899999999966993997502227-86100780002--384699999999997496243404
Q gi|254780676|r 232 KSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHKVESF--VTPQDFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 232 KSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~pV~ry--v~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329)
--||.|| |+|.+++.+.++.+.+.++|-|++=++.- |..+-.--.+. ...+....+.++...++..+...+
T Consensus 193 -iDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~~~~~~~l~~p~~d~~~~~~~i~~~~~~~y~~~s 267 (424)
T PRK08629 193 -VDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNARQYRQILNSLFGQYNQLS 267 (424)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf -532327999999999999999981798989863662264721342378998987999999999999727988960
No 74
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=95.63 E-value=0.28 Score=30.68 Aligned_cols=207 Identities=18% Similarity=0.269 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHH---------HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5223535223446789---988882357999999997---------0775189850544534532589999999999853
Q gi|254780676|r 94 AICTRACTFCNVATGK---PQPLDPQEPENISWAVRS---------MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~---P~~~D~~EP~rvA~av~~---------l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
..|+-+|-||...... +..+..-.+..+.+.++. +..+||.|.-+----|- -+.-+-|+++|+.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC----CCHHHHHHHHHHC
T ss_conf 543577758966677777777872415899999999984225665678877999379883346----4889999999860
Q ss_pred CCCCEEEEECCCCCCC-HHHHHHHHHCCCHHHHHCCCCCC--CCCCCCCC--CCHHHHHHHHHHHHHHC-CCEEEECCCE
Q ss_conf 3586899815462344-68999874107023320138300--02756389--70358999999999970-8916701404
Q gi|254780676|r 162 APSTTIEVLTPDFLRK-PHALEKVVSAKPDVFNHNLETVA--SNYLMVRP--GARYFHSLRLLQRVKEL-DPLIFTKSGI 235 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G~-~~al~~v~~A~pdV~nHNiETV~--rLy~~VRp--~a~Y~rSL~vL~~aK~~-~~~i~TKSGl 235 (329)
.- .++=+++- |. .+.++.+. .||.+---+..+. .+.+..|| .-++++=|+-|...++. ...+. --+
T Consensus 108 g~-~~tflvTN---gslpdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~v--ir~ 179 (296)
T COG0731 108 GK-KTTFLVTN---GSLPDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTV--IRT 179 (296)
T ss_pred CC-CEEEEEEC---CCHHHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEE--EEE
T ss_conf 79-50899938---97699998740--588799981468888999834888745299999999974012787489--999
Q ss_pred EEEEEECHHH--HHHHHHHHHHCCCCEEECCHHCCCCCCC--CCCCCCCCHHHHHHHH-HHHHHCCCCEEECCCCCCCCH
Q ss_conf 8876420688--9999999996699399750222786100--7800023846999999-999974962434048300103
Q gi|254780676|r 236 MLGLGETRNE--ILQLMDDLRTADVDFLTMGQYLQPTRKH--HKVESFVTPQDFKSYE-TIAYSKGFLMVSASPLTRSSY 310 (329)
Q Consensus 236 MvGLGEt~eE--i~e~l~DLr~~gvdilTiGQYL~Ps~~h--~pV~ryv~P~eF~~~~-~~a~~~Gf~~V~SgPlVRSSY 310 (329)
|+.=|..+++ +.+..+-|..+..|.+-|--|.+|...- ++...-..-++..++. .++...|+....-..=-|..-
T Consensus 180 tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~l~~~~~sr~~l 259 (296)
T COG0731 180 TLVKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVL 259 (296)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEE
T ss_conf 98526468708899999999853997699834756876760567001644599999999863235745541367746887
Q ss_pred HH
Q ss_conf 18
Q gi|254780676|r 311 HA 312 (329)
Q Consensus 311 ~A 312 (329)
.|
T Consensus 260 l~ 261 (296)
T COG0731 260 LA 261 (296)
T ss_pred CC
T ss_conf 15
No 75
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.35 Score=29.99 Aligned_cols=205 Identities=16% Similarity=0.200 Sum_probs=127.6
Q ss_pred EEEEEECCCCCCCCCCCCCC---C-CCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 69998665223535223446---7-899888823579999999970-775189850544534532589999999999853
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVA---T-GKPQPLDPQEPENISWAVRSM-KLSHVVITSVDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~---~-G~P~~~D~~EP~rvA~av~~l-~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
..|-+----|..+|.||+=- . |.+...+..-|+-+.+-.... +..-|+.|.= -|---+....+..++.|+.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGG----EP~~q~e~~~~~~~~ake~ 111 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGG----EPTLQAEFALDLLRAAKER 111 (260)
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECC----HHHHHHHHHHHHHHHHHHC
T ss_conf 499998789899899897946760656565645789899998743169988999896----0444399999999999987
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 35868998154623446899987410702332013830-00275638970358999999999970891670140488764
Q gi|254780676|r 162 APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG 240 (329)
+..+=+=+-.|.- .++++.+++. .|-++=-|--- +++|+.+. +++-+.-|+.++.+++.|..+-.-.=++=|..
T Consensus 112 --Gl~~~l~TnG~~~-~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~t-g~~~~~vl~~~~~l~~~g~~ve~r~lviPg~~ 186 (260)
T COG1180 112 --GLHVALDTNGFLP-PEALEELLPL-LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIRTLVIPGYN 186 (260)
T ss_pred --CCEEEEECCCCCC-HHHHHHHHHH-CCCEEEECCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf --9908997689988-2689999974-23148840668878889875-68716889999998617983999887338988
Q ss_pred ECHHHHHHHHHHHHHC-CCCEEECCHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 2068899999999966-993997502227861007-80002384699999999997496243404
Q gi|254780676|r 241 ETRNEILQLMDDLRTA-DVDFLTMGQYLQPTRKHH-KVESFVTPQDFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~-gvdilTiGQYL~Ps~~h~-pV~ryv~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329)
..++||.+..+.+.+. ...-+.+-+|-++....+ |.- ..++-++.++.|.+.|.++|.-|
T Consensus 187 d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~---~~~~le~~~~~a~~~~~~~v~~~ 248 (260)
T COG1180 187 DDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPT---PVETLEEAKKLAKEEGLKFVYIG 248 (260)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999973086665587566874011357999---28889988877899988878533
No 76
>KOG4355 consensus
Probab=94.73 E-value=0.12 Score=33.19 Aligned_cols=165 Identities=20% Similarity=0.308 Sum_probs=102.2
Q ss_pred EECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCHHHHHHHHHHHHHHHCCCC--
Q ss_conf 86652235352234467--899888823579999999970775189850544534-5325899999999998533586--
Q gi|254780676|r 91 ILGAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDL-DDGGAQHFAEVISAIRESAPST-- 165 (329)
Q Consensus 91 ilG~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL-~DgGA~hfa~~I~~Ir~~~P~~-- 165 (329)
-...-|--+|.+|-.++ |.-.....+|-...+...-..|..-+-+||-|---. .|-|.+ .-..+.++.+..|+-
T Consensus 192 ~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~s-lp~ll~klv~~iPe~cm 270 (547)
T KOG4355 192 SINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKS-LPKLLWKLVEVIPESCM 270 (547)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH-HHHHHHHHHHHCCHHHH
T ss_conf 96245541115556501243325478899999999988517479981245430355443000-69999999986536664
Q ss_pred -EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCC----CC--------------CCHHHHHHHHHHHHHHCC
Q ss_conf -89981546234468999874107023320138300027563----89--------------703589999999999708
Q gi|254780676|r 166 -TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMV----RP--------------GARYFHSLRLLQRVKELD 226 (329)
Q Consensus 166 -~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~V----Rp--------------~a~Y~rSL~vL~~aK~~~ 226 (329)
.+-.-.|-| -|+.+.++ ..|++| ||.|.-. .. .+++++-.+.| ++.-
T Consensus 271 lr~gmTnpP~-----ilehl~e~-a~vlrh-----p~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~L---terV 336 (547)
T KOG4355 271 LRAGMTNPPY-----ILEHLEEA-AFVLRH-----PRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFL---TERV 336 (547)
T ss_pred HHHCCCCCCH-----HHHHHHHH-HHHHCC-----CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHC
T ss_conf 4315878815-----99889999-987648-----70799983243357436888877787645678899888---7547
Q ss_pred CEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CC
Q ss_conf 9167014048876-42068899999999966993997502227-86
Q gi|254780676|r 227 PLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PT 270 (329)
Q Consensus 227 ~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps 270 (329)
|+|..-+-||.|. |||+|+--++|.-.++-.--.|-|.||.. |.
T Consensus 337 Pgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpG 382 (547)
T KOG4355 337 PGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPG 382 (547)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf 9818862124248887167799999999971685403530479998
No 77
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.08 E-value=0.68 Score=27.90 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=92.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCC-CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 9988882357999999997077518985054453-453-25899999999998533586899815462344689998741
Q gi|254780676|r 109 KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDD-LDD-GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS 186 (329)
Q Consensus 109 ~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD-L~D-gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~ 186 (329)
.+..+..+|-.++|++..++|.+++=++|--... .|. .++ .+.++.|++ .+++..-.|+|.++| ++..++
T Consensus 19 ~~~~~s~e~K~~ia~~L~~~Gv~~IEvgsfvspk~vP~~~d~---~ev~~~i~~-~~~~~~~~l~~n~~g----~~~A~~ 90 (287)
T PRK05692 19 EKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADA---AEVMAGIQR-RPGVTYAALTPNLKG----LEAALA 90 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCH---HHHHHHHHC-CCCCEEEEECCCHHH----HHHHHH
T ss_conf 899849999999999999849999996687782302131679---999987640-679678664364042----799997
Q ss_pred CCCHHHHHCCCCCCCCC-CCCCC--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-----E-CHHHHHHHHHHHHHCC
Q ss_conf 07023320138300027-56389--70358999999999970891670140488764-----2-0688999999999669
Q gi|254780676|r 187 AKPDVFNHNLETVASNY-LMVRP--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-----E-TRNEILQLMDDLRTAD 257 (329)
Q Consensus 187 A~pdV~nHNiETV~rLy-~~VRp--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-----E-t~eEi~e~l~DLr~~g 257 (329)
++.+.++=-+-+++.+. ..++. .-..++-.+.++++|+.+..+. -.+....| . ..+.+++.++.+.+.|
T Consensus 91 ~g~~~i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~--~~i~~afg~p~~~~~~~~~l~~~~~~~~~~G 168 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVR--GYVSCVLGCPYEGEVPPEAVADVAERLFALG 168 (287)
T ss_pred CCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 79898999974179999987479999999999999999997698799--9874013676468648999999999998579
Q ss_pred CCEEECC
Q ss_conf 9399750
Q gi|254780676|r 258 VDFLTMG 264 (329)
Q Consensus 258 vdilTiG 264 (329)
+|.++|-
T Consensus 169 a~~I~la 175 (287)
T PRK05692 169 CDEISLG 175 (287)
T ss_pred CCEEECC
T ss_conf 9785447
No 78
>PRK05588 histidinol-phosphatase; Provisional
Probab=93.83 E-value=0.76 Score=27.58 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=66.5
Q ss_pred HHHHHCC-CHHHHHCCCCCCCCCCCCCCCCH---HH-HHHHHHHHHHHCCC--EEEECCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 9874107-02332013830002756389703---58-99999999997089--167014048876420688999999999
Q gi|254780676|r 182 EKVVSAK-PDVFNHNLETVASNYLMVRPGAR---YF-HSLRLLQRVKELDP--LIFTKSGIMLGLGETRNEILQLMDDLR 254 (329)
Q Consensus 182 ~~v~~A~-pdV~nHNiETV~rLy~~VRp~a~---Y~-rSL~vL~~aK~~~~--~i~TKSGlMvGLGEt~eEi~e~l~DLr 254 (329)
+.+...+ .||++| +.-+.|....-.+.-+ |. .=-++|+.+.+.|. .|-| ||+ +-+.+.....+.+.-.+
T Consensus 132 ~~~~~~~~fdvlgH-lD~i~r~~~~~~~~~~~~~~~~~i~~il~~i~~~g~~lEiNT-sgl--~~~~~~~~~~~i~~~~~ 207 (256)
T PRK05588 132 KCLEKYDFIDSLGH-IDYICRYAKYEDKEIYYDEFKEIIDEILKVLIEKGKVLEINT-RRL--DHKTAFENLVKIYKRFY 207 (256)
T ss_pred HHHHHCCCCCEECC-CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCC--CCCCCCCCHHHHHHHHH
T ss_conf 99983599866325-258977267887545577889999999999998698599865-234--78988788799999999
Q ss_pred HCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 6699399750222786100780002384699999999997496243
Q gi|254780676|r 255 TADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 255 ~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329)
+.|..++||| |..|.|=+ =-..|++-.+++.+.||+.|
T Consensus 208 elGG~~itiG-----SDAH~p~~---vg~~f~~a~~ll~~~Gf~~v 245 (256)
T PRK05588 208 ELGGKYITLG-----SDSHNIED---IGNNFKNALEIAEYCNLKPV 245 (256)
T ss_pred HHCCCEEEEE-----CCCCCHHH---HHHHHHHHHHHHHHCCCEEE
T ss_conf 8599479972-----79898899---88639999999998599899
No 79
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=93.69 E-value=0.8 Score=27.42 Aligned_cols=37 Identities=14% Similarity=0.323 Sum_probs=16.5
Q ss_pred CCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCCEEEC
Q ss_conf 089167014048876420-----68899999999-9669939975
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVDFLTM 263 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvdilTi 263 (329)
+|.+.. -+=+.||||- -|+++.+++-+ .+.|||+..|
T Consensus 213 aGA~~I--D~Ti~GlGegAGNa~lE~lva~l~r~g~~~g~d~~~l 255 (337)
T PRK08195 213 AGADRI--DASLAGFGAGAGNAPLEVLVAVLDRMGWETGVDLFKL 255 (337)
T ss_pred CCCCEE--EEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 099999--8505344888787389999999974698658798999
No 80
>KOG1939 consensus
Probab=93.16 E-value=0.14 Score=32.80 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CC-CEEEECCCEEEEEEE--CHHHHHHHH
Q ss_conf 34468999874107023320138300027563897035899999999997-08-916701404887642--068899999
Q gi|254780676|r 175 LRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKE-LD-PLIFTKSGIMLGLGE--TRNEILQLM 250 (329)
Q Consensus 175 ~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~-~~-~~i~TKSGlMvGLGE--t~eEi~e~l 250 (329)
+|-++.|..=-+|+||+|+-||--+.-||..|--- +.+.-+..+.++ .+ ....+-||.|+-.-- ..+.+.+.+
T Consensus 98 kGFkdll~IGnQaRP~iFdl~i~kp~~LY~~VvEv---deRV~l~~~~~~~~~~~~~~~~sGe~~rv~kk~De~alr~~L 174 (1247)
T KOG1939 98 KGFKDLLLIGNQARPDIFDLNIRKPEVLYEDVVEV---DERVVLEDQDEDPLDESAQIEVSGEFLRVEKKVDEEALRQDL 174 (1247)
T ss_pred CCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHEEC---CCEEEHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 34123521155568860532366762465545130---006652330547433333124575299997058789999999
Q ss_pred HHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCCCCCH
Q ss_conf 9999669939975022278610078000238469999999999749624340----48300103
Q gi|254780676|r 251 DDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA----SPLTRSSY 310 (329)
Q Consensus 251 ~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S----gPlVRSSY 310 (329)
++|++-|+.-+.+- -...|.-|+-=....++|.++||.+|.- -||+|---
T Consensus 175 k~l~~~G~~siav~----------l~HSyt~P~HE~~v~kiA~e~GF~~vSLSs~l~PMik~vp 228 (1247)
T KOG1939 175 KELYDKGVKSIAVV----------LLHSYTYPDHELEVGKIAKEIGFSHVSLSSKLMPMIKVVP 228 (1247)
T ss_pred HHHHHCCCCEEEEE----------EECCCCCCCHHHHHHHHHHHHCCCCEECHHCCCCCEEEEC
T ss_conf 99987686548556----------3111457728889888998738660000201351215504
No 81
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=92.99 E-value=1 Score=26.67 Aligned_cols=204 Identities=13% Similarity=0.207 Sum_probs=115.6
Q ss_pred CCEEEEEECCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHH-C--CCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 726999866522353522344------67899888823579999999970-7--75189850544534532589999999
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNV------ATGKPQPLDPQEPENISWAVRSM-K--LSHVVITSVDRDDLDDGGAQHFAEVI 155 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V------~~G~P~~~D~~EP~rvA~av~~l-~--Lk~vViTSV~RDDL~DgGA~hfa~~I 155 (329)
+|.-|| .-|--+|.||+= ..| ..+..+|-...+..-+.. . -.=|.++. --|=--+....++.
T Consensus 22 Rt~vFl---~GC~lrC~~ChNpet~~~~~g--~~~t~~el~~~i~~~~~f~~~sgGGVT~SG----GEPllq~ef~~~l~ 92 (246)
T PRK11145 22 RFITFM---QGCLMRCLYCHNRDTWDTHGG--KEVTVEELMKEVVTYRHFMNASGGGVTASG----GEAILQAEFVRDWF 92 (246)
T ss_pred EEEEEE---CCCCCCCCCCCCHHHHCCCCC--EECCHHHHHHHHHHHHHHHHHCCCEEEEEC----CCEECCHHHHHHHH
T ss_conf 899980---687788998979678486799--875599999999987999860596389869----95126899999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 9998533586899815462344-689998741070233201383-00027563897035899999999997089167014
Q gi|254780676|r 156 SAIRESAPSTTIEVLTPDFLRK-PHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKS 233 (329)
Q Consensus 156 ~~Ir~~~P~~~IEvLiPDf~G~-~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKS 233 (329)
+..|+..-.|.|| +..|-.. .++++.++. -.|-++=.|-. -+..|+.+ ++.+-+.-|+.|++..+.+..+..-.
T Consensus 93 ~~~k~~gi~taid--TnG~~~~~~~~~~~ll~-~~D~vl~DiK~~d~~~h~~~-tG~~n~~iL~nl~~l~~~~~~~~iR~ 168 (246)
T PRK11145 93 RACKKEGIHTCLD--TNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNL-VGVSNHRTLEFARYLAKRNQKTWIRY 168 (246)
T ss_pred HHHHHCCCCEEEE--CCCCCCCCHHHHHHHHH-HCCEEEECCCCCCHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998879989998--99998755799999886-32345764666898999999-88891899999999997899789988
Q ss_pred CEEEEEEECHHHHHHHHHHHHHCC-C---CEE---ECCHHC-CCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 048876420688999999999669-9---399---750222-786100780--0023846999999999974962434
Q gi|254780676|r 234 GIMLGLGETRNEILQLMDDLRTAD-V---DFL---TMGQYL-QPTRKHHKV--ESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 234 GlMvGLGEt~eEi~e~l~DLr~~g-v---dil---TiGQYL-~Ps~~h~pV--~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
=+|=|+--++|++.++.+-+++.+ + ++| ++|++= +.--..++. ..=.++++-+++++++.+.|+++|.
T Consensus 169 pvIPg~nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~l~~~~~i~~~~Gl~vvy 246 (246)
T PRK11145 169 VVVPGWTDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERIKGILEQYGHNVMY 246 (246)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 677998899999999999999769976366578875665479983999888898997999999999999983998869
No 82
>KOG2492 consensus
Probab=92.88 E-value=1.1 Score=26.57 Aligned_cols=213 Identities=21% Similarity=0.353 Sum_probs=129.2
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCC--CC--CCCCCHHHHHHHHHHHHHH---CCCEEEEECCC----CCC----------
Q ss_conf 972699986652235352234467--89--9888823579999999970---77518985054----453----------
Q gi|254780676|r 84 KNHATFMILGAICTRACTFCNVAT--GK--PQPLDPQEPENISWAVRSM---KLSHVVITSVD----RDD---------- 142 (329)
Q Consensus 84 ~gtATFMilG~~CTR~C~FC~V~~--G~--P~~~D~~EP~rvA~av~~l---~Lk~vViTSV~----RDD---------- 142 (329)
..||-.-|| --|---|.||-|.. |+ ..|+ +-+-+-|++| |+|-|.+-.-+ ||+
T Consensus 219 s~tAFvSiM-RGCdNMCtyCiVpftrGreRsrpi-----~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~ 292 (552)
T KOG2492 219 STTAFVSIM-RGCDNMCTYCIVPFTRGRERSRPI-----ESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVP 292 (552)
T ss_pred CCHHHHHHH-HCCCCCCCEEEEECCCCCCCCCCH-----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCC
T ss_conf 633479887-564554455877525775457746-----89999998776547403663014544334442656324786
Q ss_pred -----------CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH--H------CCCCCCCCC
Q ss_conf -----------453258999999999985335868998154623446899987410702332--0------138300027
Q gi|254780676|r 143 -----------LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN--H------NLETVASNY 203 (329)
Q Consensus 143 -----------L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n--H------NiETV~rLy 203 (329)
-+-.|.--||.-...+-...|+..|---.|-=+.-.+.+-.++...+.+.+ | |-++.+
T Consensus 293 ~~~~~GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE--- 369 (552)
T KOG2492 293 TNLSPGFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLE--- 369 (552)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHH---
T ss_conf 66688840121146788408999998865286507873699987773999999881753142242566688548999---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC--CCCCCCCCCCCC
Q ss_conf 563897035899999999997089167014048876-42068899999999966993997502227--861007800023
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ--PTRKHHKVESFV 280 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~--Ps~~h~pV~ryv 280 (329)
..|.+-+-+--|++...+++.=|++--+|-++-|. |||.+|-.++..-|+++|-|+.-.=-|-- -|..|+...-=+
T Consensus 370 -~mrRgysreayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddv 448 (552)
T KOG2492 370 -IMRRGYSREAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDV 448 (552)
T ss_pred -HHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCCC
T ss_conf -9870578676534777788658887632325740567872778999999998553736667765314414556523665
Q ss_pred ----CHHHHH----HHHHHHHHCCCCEEECCCCC
Q ss_conf ----846999----99999997496243404830
Q gi|254780676|r 281 ----TPQDFK----SYETIAYSKGFLMVSASPLT 306 (329)
Q Consensus 281 ----~P~eF~----~~~~~a~~~Gf~~V~SgPlV 306 (329)
.-+... .+++.|...-=..|.|--+|
T Consensus 449 peeVKnrrl~~Li~~Fre~A~~~~d~lvgc~Qlv 482 (552)
T KOG2492 449 PEEVKNRRLFELITFFREEAIKFNDGLVGCTQLV 482 (552)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 1778877799999999998888753586521000
No 83
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.62 E-value=1.1 Score=26.33 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=15.7
Q ss_pred CCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCCEE
Q ss_conf 089167014048876420-----68899999999-96699399
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVDFL 261 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvdil 261 (329)
+|.+.. -+=+-||||- -|+++.+|+-+ .+.|+|..
T Consensus 212 aGa~~V--D~Ti~GlGe~aGNa~lE~lVa~l~~~g~~tgiDl~ 252 (333)
T TIGR03217 212 AGATRI--DASLRGLGAGAGNAPLEVFVAVLDRLGWNTGCDLF 252 (333)
T ss_pred CCCCEE--EECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHH
T ss_conf 199999--76274488988873499999999617986587989
No 84
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=92.55 E-value=1.2 Score=26.28 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 988882357999999997077518985054453453258999999999985335---86899815462344689998741
Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP---STTIEVLTPDFLRKPHALEKVVS 186 (329)
Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P---~~~IEvLiPDf~G~~~al~~v~~ 186 (329)
..++..+|..++|.+...||.++.-+++..- -.|--.|++.|.. ..+ .+.+..+.++ ....++.+++
T Consensus 18 ~~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~----s~~~~~~~~~i~~---~~~~~~~~~~~~~~~~---~~~~~ea~~~ 87 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVA----SPGDFEFVRAIAE---KAGLFICALIAALARA---IKRDIEALLE 87 (409)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHHHH---HCCCCCCCHHHHHHHH---HHHHHHHHHH
T ss_conf 9957889999999999976998799727868----8546999999987---4686322022331786---7755999975
Q ss_pred CCCHHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 070233201383000275638---97035899999999997089167014048876420688999999999669939975
Q gi|254780676|r 187 AKPDVFNHNLETVASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 187 A~pdV~nHNiETV~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
++.+.+.==+-|.+-+-.... ..-..+...+..+++|+.+..+. -+.+-...-..+-++++++.+.+.|++++.+
T Consensus 88 a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~~a~~~g~~~~--~~~Ed~~rt~~e~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 88 AGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVR--FSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 79998999974788999988489999999999999999997397589--8753133679999999999999719949997
Q ss_pred CHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 022278610078000238469999999
Q gi|254780676|r 264 GQYLQPTRKHHKVESFVTPQDFKSYET 290 (329)
Q Consensus 264 GQYL~Ps~~h~pV~ryv~P~eF~~~~~ 290 (329)
+- -.-+-+|.++.+.=+
T Consensus 166 ~D----------TvG~~~P~~~~~~i~ 182 (409)
T COG0119 166 PD----------TVGVATPNEVADIIE 182 (409)
T ss_pred CC----------CCCCCCHHHHHHHHH
T ss_conf 78----------768658799999999
No 85
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=91.88 E-value=1.4 Score=25.73 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=129.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 726999866522353522344678-99888823579999999970775189850--544534532589999999999853
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATG-KPQPLDPQEPENISWAVRSMKLSHVVITS--VDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G-~P~~~D~~EP~rvA~av~~l~Lk~vViTS--V~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
++-..-+-|.-|.=+|.-|.-.-= .--+++..+-...-++..+-|..-+.|.. --|-+.| -+-|.+-+++++++
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VP---l~kf~d~lK~lke~ 86 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP---LWKFKDELKALKER 86 (275)
T ss_pred CCCEEEEECCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC---HHHHHHHHHHHHHH
T ss_conf 772378863635753817779999875253257788899999845760589757868799742---89999999998775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEE
Q ss_conf 358689981546234468999874107023320----1383000275638970358999999999970891670140488
Q gi|254780676|r 162 APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH----NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIML 237 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH----NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMv 237 (329)
. +.+|-.-+. |. +++.++++..++.||..- .=++..|.|+.-..--+|.|||..|+. ++-.+. --+++
T Consensus 87 ~-~l~inaHvG-fv-dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e---~~irvv--pHiti 158 (275)
T COG1856 87 T-GLLINAHVG-FV-DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE---NGIRVV--PHITI 158 (275)
T ss_pred H-CEEEEEEEE-EC-CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHH---CCCEEC--EEEEE
T ss_conf 3-748999851-00-1788999987168689986127748999997688637777889999997---094253--05999
Q ss_pred EEEECH-HHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 764206-88999999999669939975022278610078000238469999999999749624
Q gi|254780676|r 238 GLGETR-NEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLM 299 (329)
Q Consensus 238 GLGEt~-eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~ 299 (329)
||---. +-=+++++-|.+...|.|.|--.+.---....-.+=.++||-...-++|.+. |..
T Consensus 159 GL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~-f~~ 220 (275)
T COG1856 159 GLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK-FPN 220 (275)
T ss_pred EECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHH-CCC
T ss_conf 73168523338788998607997399999813885010577976989999999999985-899
No 86
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=91.69 E-value=1.4 Score=25.60 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=138.0
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
|...=+---|==-|+||+--+=-- -.=.-.|+++++-|..|-=.|-|=-=.==|.-|----..|.+--++|=.+|-.+.
T Consensus 198 vav~~faRGCPf~C~fCsQwkFWr-ryR~RdPkKfvdEI~~L~r~hgVgfF~LADEePT~Nr~~f~efCEe~Iar~l~~~ 276 (506)
T TIGR02026 198 VAVPNFARGCPFTCNFCSQWKFWR-RYRARDPKKFVDEIEKLVREHGVGFFILADEEPTVNRKKFQEFCEELIARNLQIK 276 (506)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHH-HHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 987316786976557457520445-4047886138999999986318533663278873016899999999985789569
Q ss_pred EEE----ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-
Q ss_conf 998----1546234468999874107023320138300027-5638970358999999999970891670140488764-
Q gi|254780676|r 167 IEV----LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNY-LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG- 240 (329)
Q Consensus 167 IEv----LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy-~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG- 240 (329)
|.. =+-|-..+.+.|.---.||..-|.=-+|..-.+. ..+|.+.+-...=+-++-.|+++ |.|-.-.++||-
T Consensus 277 v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~--i~~~A~fi~g~e~ 354 (506)
T TIGR02026 277 VTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHN--ILSEAQFIVGLEN 354 (506)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CEEEEEEEECCCC
T ss_conf 99965111304240289888888606030012100466532312136675244489999997618--4021002425435
Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2068899999999966993997502227861007800023846999999999974
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329)
||++++.|+++-+.+-.-|++. -.||||-.|..+=+++.+.
T Consensus 355 ~~~~~~~etyr~~ldw~PD~~~--------------w~~yTPwpft~lf~~l~dr 395 (506)
T TIGR02026 355 ETDETLEETYRQLLDWDPDLAN--------------WLMYTPWPFTSLFEELSDR 395 (506)
T ss_pred CCHHHHHHHHHHHHCCCCCHHH--------------HCCCCCCCCHHHHHHHCCC
T ss_conf 8756899999997337833242--------------1455898763678863075
No 87
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=90.13 E-value=2 Score=24.62 Aligned_cols=189 Identities=16% Similarity=0.249 Sum_probs=119.2
Q ss_pred HHHHHCCC-CEEEEEECCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCEEEEEC--CC----CCCCCCCHH
Q ss_conf 76750897-269998665223535223446789988--8823579999999970775189850--54----453453258
Q gi|254780676|r 78 IGECWNKN-HATFMILGAICTRACTFCNVATGKPQP--LDPQEPENISWAVRSMKLSHVVITS--VD----RDDLDDGGA 148 (329)
Q Consensus 78 i~ECw~~g-tATFMilG~~CTR~C~FC~V~~G~P~~--~D~~EP~rvA~av~~l~Lk~vViTS--V~----RDDL~DgGA 148 (329)
..+-++.| --.|.=.-.=|-.-|.||=|..-+... .+++.-..=+.-...-|.|=+.|=. || +|=-.||-.
T Consensus 146 la~~r~Eg~~~sfv~Im~GCdkfCtYCiVPYtRG~E~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~ 225 (456)
T TIGR01574 146 LAEVRNEGKFKSFVNIMEGCDKFCTYCIVPYTRGEEISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKT 225 (456)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 77512476422524031476885454661530482012574469999999986586487403653011158752258867
Q ss_pred HHHHHHHHHHHHHCCCCEEEE-----ECCCCCCCHHHHHHHHHCCCHHHHHCCC----CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999985335868998-----1546234468999874107023320138----3000275638970358999999
Q gi|254780676|r 149 QHFAEVISAIRESAPSTTIEV-----LTPDFLRKPHALEKVVSAKPDVFNHNLE----TVASNYLMVRPGARYFHSLRLL 219 (329)
Q Consensus 149 ~hfa~~I~~Ir~~~P~~~IEv-----LiPDf~G~~~al~~v~~A~pdV~nHNiE----TV~rLy~~VRp~a~Y~rSL~vL 219 (329)
.-|+.-.+.+..++. +...+ -+|-=+--.|.|=.|++.+|.++.|=== =+.+.-+..+.+.+=++=|++.
T Consensus 226 ~~f~dLL~~l~rrCe-~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v 304 (456)
T TIGR01574 226 VDFADLLRELARRCE-VKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELV 304 (456)
T ss_pred ECHHHHHHHHHHHCC-HHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHH
T ss_conf 366999999987510-2215851131378787654468788737894666643752007079985107755689999999
Q ss_pred HHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 99997089167014048876-4206889999999996699399750222
Q gi|254780676|r 220 QRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 220 ~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
+..|++-|++.--|-||||. |||+|+-.+||+-++++.=|..=-=.|=
T Consensus 305 ~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys 353 (456)
T TIGR01574 305 RKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYS 353 (456)
T ss_pred HHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9998737871212453673687784668999999852262412334413
No 88
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=89.31 E-value=0.61 Score=28.23 Aligned_cols=193 Identities=19% Similarity=0.299 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCC-----CCCCCCC----CCCHHHHHHHHHHHHH--HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 652235352234-----4678998----8882357999999997--0775189850544534532589999999999853
Q gi|254780676|r 93 GAICTRACTFCN-----VATGKPQ----PLDPQEPENISWAVRS--MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 93 G~~CTR~C~FC~-----V~~G~P~----~~D~~EP~rvA~av~~--l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
-.-|-=-|.||| ++=.+|. -|-|+...+=|.+|+. ++|+=|=|-..- |=|.|-+- =-+|+..|++.
T Consensus 31 ApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~i~QLSVvGIAGPG-DpLan~~~--Tf~Tl~~v~~~ 107 (461)
T TIGR01290 31 APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAEIPQLSVVGIAGPG-DPLANIKK--TFQTLELVARE 107 (461)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCC--CHHHHHHHHHH
T ss_conf 4433455455686416678888762013468489999999998506753156325788-62457500--08999999851
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-----CCCCCCCCC-CCHHH----------HHHHHHHHHHHC
Q ss_conf 35868998154623446899987410702332013830-----002756389-70358----------999999999970
Q gi|254780676|r 162 APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-----ASNYLMVRP-GARYF----------HSLRLLQRVKEL 225 (329)
Q Consensus 162 ~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-----~rLy~~VRp-~a~Y~----------rSL~vL~~aK~~ 225 (329)
.|+++.=+-|=. .--.+.+|.|+|-+.|=.-=-|+-+ +++||=|-- |-.|. |=|.=|+..-+.
T Consensus 108 ~PDvklCLSTNG-L~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl~G~~~L~er 186 (461)
T TIGR01290 108 VPDVKLCLSTNG-LALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQLEGLEKLTER 186 (461)
T ss_pred CCCEEEECCCCC-CCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 782142001265-6313465246423888179883140635510306523326733354899999899999999999738
Q ss_pred CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC-C---CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8916701404887642068899999999966993997502227-8---6100780002384699999999
Q gi|254780676|r 226 DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ-P---TRKHHKVESFVTPQDFKSYETI 291 (329)
Q Consensus 226 ~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P---s~~h~pV~ryv~P~eF~~~~~~ 291 (329)
| |+.|=.=++==|=.|+-++|+=+..++.|-=+=.|-=... | |---+.=+|--.|+|...+++-
T Consensus 187 g--iL~KvNSvlIPGiND~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt~ygl~Gq~~P~~~el~~l~~~ 254 (461)
T TIGR01290 187 G--ILVKVNSVLIPGINDEHLVEVSKKVKELGAFLHNVMPLISAPEHGTVYGLNGQRAPAPSELKALRDR 254 (461)
T ss_pred C--CEEEECCEECCCCCCHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8--5488800643898817899987775104640005442101489883116787888898999999997
No 89
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=89.08 E-value=2 Score=24.56 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 357999999997077518985054453453258999999999985
Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRE 160 (329)
Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~ 160 (329)
.+|.+..+.....|..++.+-.=+ ..|..++++.||+
T Consensus 78 ~~P~~~i~~~~~aGad~it~H~Ea--------~~~~~~~i~~i~~ 114 (235)
T PRK08091 78 ADQWTVAKACVKAGAHCITLQAEG--------DIHLHHTLSWLGQ 114 (235)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCC--------CCCHHHHHHHHHH
T ss_conf 888999999997599899975455--------5588999999998
No 90
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.68 E-value=2.5 Score=23.89 Aligned_cols=111 Identities=20% Similarity=0.356 Sum_probs=71.7
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335868998154623446899987410702332-01383000275
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNYL 204 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy~ 204 (329)
.+|||.-.|+--=|. +.-.|. +.+.|+++|+..|+..|||-+- +.+.++..+++++|++= -|+
T Consensus 164 HR~gL~D~iLIKdNH--i~~~g~--i~~ai~~~r~~~~~~kIeVEv~----sl~q~~ea~~~gaDiImLDNm-------- 227 (288)
T PRK07896 164 HRMGLGDAALIKDNH--VAAAGS--VVAALRAVRAAAPDLPCEVEVD----SLEQLDEVLAEGAELILLDNF-------- 227 (288)
T ss_pred CCCCCCCEEEEEHHH--HHHCCC--HHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCCCEEEECCC--------
T ss_conf 568875428986214--653086--9999999998589961999979----799999987469999997799--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEE-EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 6389703589999999999708916-70140488764206889999999996699399750222
Q gi|254780676|r 205 MVRPGARYFHSLRLLQRVKELDPLI-FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 205 ~VRp~a~Y~rSL~vL~~aK~~~~~i-~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
+.+.=-+.++..+..++.+ .--||.|- .+.+.+....|||++.+|---
T Consensus 228 ------s~e~~~~av~~~~~~~~~v~lEaSGgI~---------~~ni~~yA~tGVD~IS~G~LT 276 (288)
T PRK07896 228 ------PVWQTQEAVQRRDARAPTVLLESSGGLT---------LDTAAAYAATGVDYLAVGALT 276 (288)
T ss_pred ------CHHHHHHHHHHHHCCCCCEEEEEECCCC---------HHHHHHHHHCCCCEEECCHHH
T ss_conf ------9999999999983769874899988999---------999999996599999878532
No 91
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=88.60 E-value=2.5 Score=23.86 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=119.2
Q ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEE--CCCCCC-CCCCCCCC--CCCCCCCCHHHHHHH----------
Q ss_conf 999999749823652578878767508972699986--652235-35223446--789988882357999----------
Q gi|254780676|r 57 TYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMIL--GAICTR-ACTFCNVA--TGKPQPLDPQEPENI---------- 121 (329)
Q Consensus 57 ~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMil--G~~CTR-~C~FC~V~--~G~P~~~D~~EP~rv---------- 121 (329)
++.+|+..-.-|+ +|.|-.-+| -.-|-- .|-||.-. .+.|+..-..||...
T Consensus 50 l~~~lr~KPvRt~--------------sgvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY 115 (515)
T COG1243 50 LREILRRKPVRTI--------------SGVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPY 115 (515)
T ss_pred HHHHHHHCCCEEC--------------CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCH
T ss_conf 9999853672002--------------46268998438889999807758997777888554788842667776057918
Q ss_pred ---HHHHHHH-CCCE-------EEE----ECCCCCCCCCCHHHHHHHHHHHHH-----------------HHCCCCEEEE
Q ss_conf ---9999970-7751-------898----505445345325899999999998-----------------5335868998
Q gi|254780676|r 122 ---SWAVRSM-KLSH-------VVI----TSVDRDDLDDGGAQHFAEVISAIR-----------------ESAPSTTIEV 169 (329)
Q Consensus 122 ---A~av~~l-~Lk~-------vVi----TSV~RDDL~DgGA~hfa~~I~~Ir-----------------~~~P~~~IEv 169 (329)
..-++.| .+-| ++. |+.+. |.--+....|-+++- .++-+++||
T Consensus 116 ~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~----~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE- 190 (515)
T COG1243 116 EQVRARLKQLETIGHTSDKVELIIMGGTFTALSL----EYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE- 190 (515)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEE-
T ss_conf 8888889999973998642899996265668887----89999999999865312204889887400023422679983-
Q ss_pred ECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHH
Q ss_conf 154623446899987410702332013830-00275638970358999999999970891670140488764-2068899
Q gi|254780676|r 170 LTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEIL 247 (329)
Q Consensus 170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~ 247 (329)
-=||+.. .+.|+.++.-|.+.+---+-|+ .+.....-.+|+++...+--+-+|++|..+. .-||.||= -..+--+
T Consensus 191 TRPD~~~-ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~--~HiMpGLPgs~~erDl 267 (515)
T COG1243 191 TRPDYID-EEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVG--YHIMPGLPGSDFERDL 267 (515)
T ss_pred CCCCCCC-HHHHHHHHHCCCCEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEE--EEECCCCCCCCHHHHH
T ss_conf 4841007-799999996388389983265799999983389619999999999985183799--9965899998867789
Q ss_pred HHHHHHHHCC---CCEEECCHHCC--CCCC--CC--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999669---93997502227--8610--07--80002384699999999997
Q gi|254780676|r 248 QLMDDLRTAD---VDFLTMGQYLQ--PTRK--HH--KVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 248 e~l~DLr~~g---vdilTiGQYL~--Ps~~--h~--pV~ryv~P~eF~~~~~~a~~ 294 (329)
+.+..+.+.+ -|++-|=--|- -|.- -| ..-+=|+.||-.++-...+.
T Consensus 268 ~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~~ 323 (515)
T COG1243 268 ESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIYR 323 (515)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999971888898757884027987826999997089877988999999999998
No 92
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=87.14 E-value=3.1 Score=23.26 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=100.6
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCC--------------------CCCCCCCC---------
Q ss_conf 8999999997498236525788787675089726999866522--------------------35352234---------
Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAIC--------------------TRACTFCN--------- 104 (329)
Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~C--------------------TR~C~FC~--------- 104 (329)
......+++..++..- ..=.=|+....|+.-+.+=|+.- |+.-.|.+
T Consensus 49 ~~~a~~if~~~~~~v~----~~~~dG~~v~~G~~i~~i~G~a~~ll~~ER~aLN~L~~lSGIAT~T~~~v~~~~~~~~~~ 124 (284)
T PRK06096 49 ISVACKMLTTLGLTID----DAVSDGSQANAGQRLIRAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDG 124 (284)
T ss_pred HHHHHHHHHHCCCEEE----EEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999998099999----991889882799899999956899999999999999999849999999999987428980
Q ss_pred -CC-CCCCCCCCHHHHHHHHHH-----HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf -46-789988882357999999-----99707751898505445345325899999999998533586899815462344
Q gi|254780676|r 105 -VA-TGKPQPLDPQEPENISWA-----VRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK 177 (329)
Q Consensus 105 -V~-~G~P~~~D~~EP~rvA~a-----v~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~ 177 (329)
|. |-| ..|-.-..++-|-. ..+|||.-.|+--=|.=++- +++.-+.+.|+.+|+..|+..|||-+- +
T Consensus 125 ~i~~TRK-T~PGlR~l~k~AV~~GGg~nHR~gLsD~vLIKdNH~~~~-~~~~~~~~ai~~~r~~~p~~kIeVEv~----t 198 (284)
T PRK06096 125 NIACTRK-AIPGTRLLASQAILAAGGLIHRAGCAETILLFANHRHFL-HDNQDWSGAINQLRRHAPEKKIVVEAD----T 198 (284)
T ss_pred EEEECCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHH-HCCHHHHHHHHHHHHHCCCCCEEEEEC----C
T ss_conf 8971687-887734999999997593044688763588700249887-253579999999997589998899809----9
Q ss_pred HHHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 6899987410702332-01383000275638970358999999999970891670-140488764206889999999996
Q gi|254780676|r 178 PHALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT-KSGIMLGLGETRNEILQLMDDLRT 255 (329)
Q Consensus 178 ~~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T-KSGlMvGLGEt~eEi~e~l~DLr~ 255 (329)
.+.+...+++++|++= -|+ +-++-=+.++.++..++++.. -||.| -.+.+.+..+
T Consensus 199 l~~~~ea~~~gaD~IlLDnm--------------sp~~l~~av~~~~~~~~~~~lEaSGGI---------~~~ni~~yA~ 255 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKF--------------SPQQATEIAQIAPSLAPHCTLALTGGI---------NLTTLKNYLD 255 (284)
T ss_pred HHHHHHHHHCCCCEEEECCC--------------CHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHHHH
T ss_conf 99999998579999996898--------------999999999998721797799998999---------9999999998
Q ss_pred CCCCEEECCH
Q ss_conf 6993997502
Q gi|254780676|r 256 ADVDFLTMGQ 265 (329)
Q Consensus 256 ~gvdilTiGQ 265 (329)
.|||++-.|-
T Consensus 256 tGVD~i~tsa 265 (284)
T PRK06096 256 CGIRLFITSA 265 (284)
T ss_pred CCCCEEEECC
T ss_conf 0999998282
No 93
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=86.81 E-value=3.2 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=16.4
Q ss_pred CCCEEEECCCEEEEEEE-----CHHHHHHHHHHH
Q ss_conf 08916701404887642-----068899999999
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGE-----TRNEILQLMDDL 253 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGE-----t~eEi~e~l~DL 253 (329)
+|.+.. +|=+.|||| .-|||+-.|..+
T Consensus 212 AGa~~v--~~Tv~GiGERaGNa~le~v~~~L~~~ 243 (378)
T PRK11858 212 AGATQV--HTTVNGLGERAGNAALEEVVMALKYL 243 (378)
T ss_pred HCCCEE--EEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 099989--98754465465661499999999974
No 94
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=86.46 E-value=3.2 Score=23.14 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=64.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC-------------HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99998533586899815462344-------------68999874107023320138300027563897035899999999
Q gi|254780676|r 155 ISAIRESAPSTTIEVLTPDFLRK-------------PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR 221 (329)
Q Consensus 155 I~~Ir~~~P~~~IEvLiPDf~G~-------------~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~ 221 (329)
.|+||++.|+|.++.|- +|+ ..=+++.++-|.||| |.|-..=+.-|-+.|++-
T Consensus 61 LR~lk~~~pnT~L~MLL---RGQNLlGYRHYADDVVe~FV~~a~~NG~DVF--------RiFDALND~RNl~~ai~a--- 126 (616)
T TIGR01108 61 LRELKKALPNTKLQMLL---RGQNLLGYRHYADDVVEAFVKKAVENGLDVF--------RIFDALNDPRNLQKAIEA--- 126 (616)
T ss_pred HHHHHHHCCCCCHHHHH---CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEECCCCCHHHHHHHHHH---
T ss_conf 99999735787512342---0454234415843689999999997598089--------951245887789999999---
Q ss_pred HHHCCC-EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 997089-167014048876420688999999999669939975
Q gi|254780676|r 222 VKELDP-LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 222 aK~~~~-~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
+|+.|. ++--==+-=+-==-|-|.=++..+.|.+.|||.|-|
T Consensus 127 ~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~I 169 (616)
T TIGR01108 127 AKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSICI 169 (616)
T ss_pred HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9973897899997124684367888999999999818860552
No 95
>PRK07328 histidinol-phosphatase; Provisional
Probab=85.66 E-value=3.7 Score=22.75 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=51.9
Q ss_pred CHHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCC--EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 023320138300027563897-035899999999997089--16701404887642068899999999966993997502
Q gi|254780676|r 189 PDVFNHNLETVASNYLMVRPG-ARYFHSLRLLQRVKELDP--LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 189 pdV~nHNiETV~rLy~~VRp~-a~Y~rSL~vL~~aK~~~~--~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329)
.||++|- .-+.| |. .++. ...+.--++|+.+++.|. .|-| ||+=-|++|..- -.+.++-+++.|+. +|||
T Consensus 154 fdvlgH~-Dli~~-~~-~~~~~~~~~~~~~il~~~~~~g~~lEiNt-~glr~~~~e~yP-~~~il~~~~~~G~~-it~g- 226 (268)
T PRK07328 154 FDAIGHL-DLPKK-FG-HRPTGDLTELYEPALDVIARAGLCLDVNT-AGLRKPAAEVYP-APALLRAARERGIP-VVLG- 226 (268)
T ss_pred CCEECCC-CHHHH-CC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCCC-HHHHHHHHHHCCCE-EEEE-
T ss_conf 8882553-47866-48-99852466999999999997297799877-867788888886-29999999987997-9990-
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 227861007800023846999999999974962434
Q gi|254780676|r 266 YLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 266 YL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
|..|-|=+ =-..|++-.+...++||+.+.
T Consensus 227 ----SDAH~~~~---vg~~f~~a~~~lk~~Gf~~~~ 255 (268)
T PRK07328 227 ----SDAHRPEE---VGFGFAEAVALLKEAGYREVA 255 (268)
T ss_pred ----CCCCCHHH---HHHHHHHHHHHHHHCCCCEEE
T ss_conf ----59898889---886899999999986998899
No 96
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=83.87 E-value=4.4 Score=22.21 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 8899999999966993997502227861007800023846999999999974962434048
Q gi|254780676|r 244 NEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 244 eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
++..+.+.-|.++||+.|||--= ...++|..|-.++..+++.....+..+..|-
T Consensus 138 ~~~~~~~~~l~~~G~~~ltvH~R-------t~~q~~~~~a~~e~i~~~~~~~~ipvi~NGd 191 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGR-------TREQRYSGPADWDYIAEIKEAVSIPVIANGD 191 (231)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC-------CHHHCCCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf 47999999999769989998356-------1441467762269999998659977998389
No 97
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.21 E-value=4.6 Score=22.03 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=104.8
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC-CCCHH
Q ss_conf 505445345325899999999998533586899815462--344689998741070233201383000275638-97035
Q gi|254780676|r 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF--LRKPHALEKVVSAKPDVFNHNLETVASNYLMVR-PGARY 212 (329)
Q Consensus 136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf--~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR-p~a~Y 212 (329)
+.+++--++..|+..|.+-++..++..+++-|=+-+--. ..-.+..+.+.+++.|.+--|+=+.- .+.-| .+.+.
T Consensus 70 ~~~N~~g~~n~g~~~~~~~l~~~~~~~~~~pli~Si~~~~~~~~~~~a~~~~~~gad~lElNiScPn--~~~~~~~~~~~ 147 (289)
T cd02810 70 GILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPN--VGGGRQLGQDP 147 (289)
T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC--CCCCCCCCCCH
T ss_conf 3621554678788999999999986179953999788898789999999999847984899840367--56553201499
Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEEE--CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC----CCC---------
Q ss_conf 89999999999708916701404887642--068899999999966993997502227861007----800---------
Q gi|254780676|r 213 FHSLRLLQRVKELDPLIFTKSGIMLGLGE--TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHH----KVE--------- 277 (329)
Q Consensus 213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLGE--t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~----pV~--------- 277 (329)
+...++++.+++.- +--+++=|+= +.+++.+.++-+.++|+|-+++.--+..-.-.. ++.
T Consensus 148 ~~~~~i~~~v~~~~-----~~Pv~vKLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG 222 (289)
T cd02810 148 EAVANLLKAVKAAV-----DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG 222 (289)
T ss_pred HHHHHHHHHHHHCC-----CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998602-----6874884278876168999999999759968999678776555444455445677652366
Q ss_pred CCCCHHHHHHHHHHHHHC--CCCEEECCCCCCCCHHHHHHH
Q ss_conf 023846999999999974--962434048300103189999
Q gi|254780676|r 278 SFVTPQDFKSYETIAYSK--GFLMVSASPLTRSSYHAGDDF 316 (329)
Q Consensus 278 ryv~P~eF~~~~~~a~~~--Gf~~V~SgPlVRSSY~A~e~~ 316 (329)
+.+.|-......++.... ++.-+.+|= |.|..+|.|..
T Consensus 223 ~~i~~~al~~v~~~~~~~~~~i~Iig~GG-I~~~~da~e~i 262 (289)
T cd02810 223 APIRPLALRWVARLAARLQLDIPIIGVGG-IDSGEDVLEML 262 (289)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHH
T ss_conf 27788999999999997499960999899-39999999999
No 98
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=82.61 E-value=4.9 Score=21.87 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHHHHH
Q ss_conf 998-8882357999999997077518985054453---453258999999999985335868998154623--4468999
Q gi|254780676|r 109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD---LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFL--RKPHALE 182 (329)
Q Consensus 109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD---L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~--G~~~al~ 182 (329)
+|. |+-|+|-..-|.+..+-|-.-+=+- .||+ -+..-+..|.++|.+||+.+|++.|-+-+..-. ..++.+.
T Consensus 18 ~P~lP~Tp~Eia~~A~~c~~AGAsivH~H--vRd~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~~~~~~~eeR~~ 95 (274)
T pfam05853 18 SPALPVTPEEIAEEAVAAAEAGAAIVHLH--VRDPEDGRPSQDPELFREVLERIREAVPDVIINLTTGGSPGMTVEERLA 95 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 99998998999999999997087389988--4478889906889999999999998789968994578778898889999
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 874107023320138300027563897----0358999999999970891670140488764206889999999996699
Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPG----ARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329)
Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~----a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329)
.|...+||...=|+-++-- ...... ..+..--++++..++ .|+..-+.=-+..-+..+..|.+-|.
T Consensus 96 ~v~~~~Pd~aSl~~gs~nf--~~~~~d~v~~n~~~~~~~~~~~~~~--------~gi~pe~e~yd~g~l~~~~~l~~~G~ 165 (274)
T pfam05853 96 PVEALRPEMASLNMGSMNF--GLYSRDMVFPNTPADVEEFAARMQE--------AGVKPEFECFDVGHLRNAARLLKRGL 165 (274)
T ss_pred HHHHCCCCEEEECCCCCCC--CCCCCCCEECCCHHHHHHHHHHHHH--------CCCCEEEEEECHHHHHHHHHHHHHCC
T ss_conf 9986098857744666435--6567772013999999999999998--------59914999977999999999997088
No 99
>PRK08508 biotin synthase; Provisional
Probab=81.77 E-value=1.4 Score=25.76 Aligned_cols=181 Identities=18% Similarity=0.265 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE---EEEEC---CCCCC---CCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 522344678998888235799999999707751---89850---54453---4532589999999999853358689981
Q gi|254780676|r 100 CTFCNVATGKPQPLDPQEPENISWAVRSMKLSH---VVITS---VDRDD---LDDGGAQHFAEVISAIRESAPSTTIEVL 170 (329)
Q Consensus 100 C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~---vViTS---V~RDD---L~DgGA~hfa~~I~~Ir~~~P~~~IEvL 170 (329)
-+||-|..|+.. +..|..+|+++|+.+.-.+ .+..| .++++ |.+.|+..|---++.-++.-|++ +-
T Consensus 58 ~rf~lv~sg~~~--~~~~~e~v~~~v~~Ik~~~~~l~~c~slG~l~~e~~~~LkeAGvdrY~hNlETs~~~y~~I---~t 132 (279)
T PRK08508 58 LGFCLVTAGRGL--DDKKLEYVAKAAKAVKKEVPGLHLIACNGMASVEQLKELKKAGIFSYNHNLETSKEFFPKI---CT 132 (279)
T ss_pred CEEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCCHHHHCCC---CC
T ss_conf 768999823688--7544999999999986337993576117857999999999839712307667676875765---89
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHCC----------------------CCCC-------CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54623446899987410702332013----------------------8300-------027563897035899999999
Q gi|254780676|r 171 TPDFLRKPHALEKVVSAKPDVFNHNL----------------------ETVA-------SNYLMVRPGARYFHSLRLLQR 221 (329)
Q Consensus 171 iPDf~G~~~al~~v~~A~pdV~nHNi----------------------ETV~-------rLy~~VRp~a~Y~rSL~vL~~ 221 (329)
+-.|.-..+.|+.+.++|.+|-.-.| +.|| .=+|-=.+..+...-|.++.-
T Consensus 133 Thty~dRl~tl~~~k~aGl~vCsGgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe~~~l~~~e~lr~iAl 212 (279)
T PRK08508 133 THSWEERFQTCLNAKEAGLGLCSGGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPNPALPLDTPTLSADEALEIVRL 212 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCEEECCCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98889999999999981994867854478999899999999998389987515676589999888899999999999999
Q ss_pred HHHCCCEEEECCCEEEEEEECHHHHHHHHH-HHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 997089167014048876420688999999-9996699399750222786100780002384699999999997496243
Q gi|254780676|r 222 VKELDPLIFTKSGIMLGLGETRNEILQLMD-DLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 222 aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~-DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329)
++-..|+ +-|.+.=| .+....-++ -+..+|.+-+-+|-||--.-... -+.++ .-.++||...
T Consensus 213 ~RlilP~----a~Ir~agG--Re~~l~~~q~~~~~aGaN~i~~G~yLTt~G~~~-------~~D~~----mi~~lG~~v~ 275 (279)
T PRK08508 213 AKEALPN----ARLMVAGG--REVVFGERQYEIFEAGANAIVIGDYLTTKGEAP-------KKDIE----KLKSLGFEFA 275 (279)
T ss_pred HHHHCCC----CEEEECCC--HHHHCHHHHHHHHHHCCCEEEECCCCCCCCCCH-------HHHHH----HHHHCCCEEE
T ss_conf 9997898----76562465--244556369999984684688866527899786-------79999----9998699341
Q ss_pred EC
Q ss_conf 40
Q gi|254780676|r 301 SA 302 (329)
Q Consensus 301 ~S 302 (329)
.|
T Consensus 276 ~~ 277 (279)
T PRK08508 276 SS 277 (279)
T ss_pred CC
T ss_conf 24
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=80.87 E-value=5.6 Score=21.45 Aligned_cols=91 Identities=23% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-CE-
Q ss_conf 8741070233201383000275638970358999999999970891670140488764206889999999996699-39-
Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV-DF- 260 (329)
Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv-di- 260 (329)
.+-++|-+|+|--+-+.+ =++.+.|.+.+.++.-=|++ .|.....+-++++-|++.|. |+
T Consensus 22 ~l~~~GfeVi~lG~~~~~---------------e~~~~~a~e~~ad~i~vSsl---~g~~~~~~~~l~~~L~e~G~~di~ 83 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQ---------------EEFIDAAIETDADAILVSSL---YGHGEIDCKGLREKCDEAGLKDIL 83 (128)
T ss_pred HHHHCCCEEEECCCCCCH---------------HHHHHHHHHCCCCEEEECCC---CCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 999789729847988999---------------99999998739999998232---025624899999999967999998
Q ss_pred EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 975022278610078000238469999999999749624340
Q gi|254780676|r 261 LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329)
Q Consensus 261 lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329)
+.+|-.+.+ .++.|++.++..+++||..|+.
T Consensus 84 vvvGG~i~i-----------~~~d~~~~~~~l~~~Gv~~vF~ 114 (128)
T cd02072 84 LYVGGNLVV-----------GKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred EEECCCCCC-----------CCCCHHHHHHHHHHCCCCEEEC
T ss_conf 997898677-----------8310489999999669685749
No 101
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=80.39 E-value=5.8 Score=21.34 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCEEE------EECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 3579999999970775189------8505445345325899999999998533-58689981546234468999874107
Q gi|254780676|r 116 QEPENISWAVRSMKLSHVV------ITSVDRDDLDDGGAQHFAEVISAIRESA-PSTTIEVLTPDFLRKPHALEKVVSAK 188 (329)
Q Consensus 116 ~EP~rvA~av~~l~Lk~vV------iTSV~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329)
+.-..+|++++..|.+..= -||.. +.-.-|..- -+-.+++++.. --+..||..| +.++.+.+.
T Consensus 132 eQi~~~A~~vk~~G~~~lRgGa~KPRTsPy--sFqGlG~eG-L~~L~~a~~e~gl~vvTEV~~~------~~ve~~~~y- 201 (360)
T PRK12595 132 EQVAAVAQALKAKGLKLLRGGAFKPRTSPY--DFQGLGVEG-LKILKQVADEYDLAVISEIVNP------NDVEVALDY- 201 (360)
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCCCCHHH-HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHH-
T ss_conf 999999999997597557255568999997--657684579-9999999998599727985788------899999974-
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEE-------
Q ss_conf 0233201383000275638970358999999999970891670140488764206889999999996699399-------
Q gi|254780676|r 189 PDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFL------- 261 (329)
Q Consensus 189 pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdil------- 261 (329)
.|+ |+=-.|...+| .+|+.+.+.+.-+.-|- ||+-|-+|-+-+.+-+.+.|..-+
T Consensus 202 vDi----------lqIGARnmqNf----~LLk~vg~~~kPVLlKr----g~~ati~ewl~AaEyi~~~Gn~~vilceRGi 263 (360)
T PRK12595 202 VDV----------IQIGARNMQNF----ELLKAAGRVNKPVLLKR----GLSATIEEFIYAAEYIMSQGNDQIILCERGI 263 (360)
T ss_pred CCE----------EEECCHHCCCH----HHHHHHHCCCCCEEEEC----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 868----------98884103599----99999861399379607----9999999999999999867998789991775
Q ss_pred -ECCHHCCCC-----------CCCCCCCCCCCH-------HHHHHHHHHHHHCCCCEE
Q ss_conf -750222786-----------100780002384-------699999999997496243
Q gi|254780676|r 262 -TMGQYLQPT-----------RKHHKVESFVTP-------QDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 262 -TiGQYL~Ps-----------~~h~pV~ryv~P-------~eF~~~~~~a~~~Gf~~V 300 (329)
|...|-+-+ ..|+||. +.| +-......-|+..|+..+
T Consensus 264 rT~e~~tRntldl~avp~~k~~thLPVi--vDPSH~~G~r~lv~~~a~aa~a~GaDGl 319 (360)
T PRK12595 264 RTYEKATRNTLDISAVPILKQETHLPVM--VDVTHSTGRRDLLLPTAKAALAIGADGV 319 (360)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCEE--ECCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 6778766889886788998649999989--8996521557589999999997499979
No 102
>PRK10128 putative aldolase; Provisional
Probab=80.29 E-value=5.8 Score=21.32 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=88.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC-HHHHHCC
Q ss_conf 999999970775189850544534532--5899999999998533586899815462344689998741070-2332013
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDG--GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP-DVFNHNL 196 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~Dg--GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p-dV~nHNi 196 (329)
.++|.....|+.+|+| |+..| +-.-....+++++...-... |-+|+ .+...+.+++|+|. -|+--++
T Consensus 13 ~~aEi~a~~G~D~v~i------D~EHg~~~~~~~~~~~~a~~~~~~~pi--VRv~~--~~~~~i~r~LD~Ga~GiivP~V 82 (250)
T PRK10128 13 YMAEIAATSGYDWLLI------DGEHAPNTIQDLYHQLQAVAPYASQPV--IRPVE--GSKALIKQVLDIGAQTLLIPMV 82 (250)
T ss_pred HHHHHHHCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHCCCCEE--EECCC--CCHHHHHHHHHCCCCEEEECCC
T ss_conf 9999998089899998------177899999999999999986599719--98589--9988999998378987785474
Q ss_pred CCCCCCCCCCC-----------------CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHH-CCC
Q ss_conf 83000275638-----------------970358999999999970891670140488764206889999999996-699
Q gi|254780676|r 197 ETVASNYLMVR-----------------PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRT-ADV 258 (329)
Q Consensus 197 ETV~rLy~~VR-----------------p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~-~gv 258 (329)
||.+..-..|+ ..+.|.+ .-.|.+..+.+++ .+-+=||.+=|-+ ++++.+ -|+
T Consensus 83 ~tae~A~~~V~~~kYpP~G~Rg~g~~~~r~~~~g~---~~~y~~~~n~~~~-----vi~qIEt~~av~n-ldeI~av~Gv 153 (250)
T PRK10128 83 DTAEQARQVVSATRYPPYGERGVGASVARAARWGR---IENYMAQVNDSLC-----LLVQVESKTALDN-LDEILDVEGI 153 (250)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHCCE-----EEEEECCHHHHHH-HHHHHCCCCC
T ss_conf 86999999999851699999988864232244577---4799999864136-----6544155899987-9998588998
Q ss_pred CEEECCHH-CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 39975022-278610078000238469999999
Q gi|254780676|r 259 DFLTMGQY-LQPTRKHHKVESFVTPQDFKSYET 290 (329)
Q Consensus 259 dilTiGQY-L~Ps~~h~pV~ryv~P~eF~~~~~ 290 (329)
|.+-||-| |.=|..+ | .+|-+|+--+-+++
T Consensus 154 D~~fiGp~DLs~slG~-p-g~~~~p~v~~ai~~ 184 (250)
T PRK10128 154 DGVFIGPADLSASLGY-P-DNAGHPEVQRIIET 184 (250)
T ss_pred CEEEECHHHHHHHCCC-C-CCCCCHHHHHHHHH
T ss_conf 8899884889986599-9-99998699999999
No 103
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=79.83 E-value=3.2 Score=23.16 Aligned_cols=107 Identities=19% Similarity=0.317 Sum_probs=66.5
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCC--CCCCCC
Q ss_conf 97077518985054453453258999999999985335868998154623446899987410702332-013--830002
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNL--ETVASN 202 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNi--ETV~rL 202 (329)
.+|||.-.|+--=|. +.-. .-+.+.|+..|+..|...|||-+-. .+.++..+++++|++= -|+ |.+...
T Consensus 174 HR~gL~D~iLIKdNH--i~~~--g~i~~av~~ar~~~~~~~IeVEv~~----l~q~~eal~~gaDiIlLDN~s~~~~k~a 245 (296)
T PRK09016 174 HRLGLSDAFLIKENH--IIAS--GSIRQAVEKAFWLHPDVPVEVEVEN----LDELDQALKAGADIIMLDNFTTEQMREA 245 (296)
T ss_pred CCCCCCCEEEEECCC--HHHH--CCHHHHHHHHHHHCCCCCEEEEECC----HHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 358761079985560--5651--7899999999986899858999687----8999999965999999889899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 75638970358999999999970891-6701404887642068899999999966993997502227
Q gi|254780676|r 203 YLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 203 y~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
++..++. ..--||.| + .+.+.+..+.|||++.+|.--.
T Consensus 246 -------------------v~~~~~~~~lEaSGgI-----~----l~ni~~yA~tGVD~IS~GaLTh 284 (296)
T PRK09016 246 -------------------VKRTNGKAALEVSGNV-----T----LETLREFAETGVDFISVGALTK 284 (296)
T ss_pred -------------------HHHHCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEECCHHHC
T ss_conf -------------------9974796799987899-----8----9999999972999998887666
No 104
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=78.97 E-value=6.4 Score=21.04 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH-HHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCC
Q ss_conf 88235799999999707751898505445345325-89999999999853358689981546234---468999874107
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG-AQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAK 188 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG-A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~ 188 (329)
.+..|-.+.|+.++.+|...+.++..----..+.+ -.||....+++. .| +.+ --+|.+-| ..+.+.++.+ -
T Consensus 79 ~~t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~l~~~~~~ia~a~~--lP-i~l-Yn~P~~tg~~l~~~~l~~L~~-~ 153 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD--LP-VIL-YNVPGRTGVNIEPETVLRLAE-H 153 (284)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC--CC-EEE-EECCCCCCCCCCHHHHHHHHC-C
T ss_conf 789999999999998399989962665789799999999999975559--97-798-737641167888899999847-9
Q ss_pred CHHH
Q ss_conf 0233
Q gi|254780676|r 189 PDVF 192 (329)
Q Consensus 189 pdV~ 192 (329)
|.|.
T Consensus 154 pnv~ 157 (284)
T cd00950 154 PNIV 157 (284)
T ss_pred CCEE
T ss_conf 9989
No 105
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=78.89 E-value=6.4 Score=21.03 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=71.5
Q ss_pred CHHHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC-HHHHHHHHHHHH
Q ss_conf 46899987410702332-0138300027563897035899999999997089167014048876420-688999999999
Q gi|254780676|r 177 KPHALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET-RNEILQLMDDLR 254 (329)
Q Consensus 177 ~~~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt-~eEi~e~l~DLr 254 (329)
+.+..+.+++++.|=++ +=--|.|.+-.+.-.-..=.++|+.|+...+..-++. .-+.|==|=. -+++-+++.||-
T Consensus 124 lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~--a~iVl~PGvNdge~L~kT~~dL~ 201 (414)
T COG1625 124 LTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVH--AQIVLCPGVNDGEELEKTLEDLE 201 (414)
T ss_pred CCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEE--EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5426899997699806999960898999998639867789999999997531135--67998578575777999999999
Q ss_pred HCCCCE-EECCHHCCC---CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 669939-975022278---6100780002384699999999997
Q gi|254780676|r 255 TADVDF-LTMGQYLQP---TRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 255 ~~gvdi-lTiGQYL~P---s~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
+-|..- +.++ ..| +.-.-|+.+-.+|++-++++++..+
T Consensus 202 ~~g~~~~~~~~--~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re 243 (414)
T COG1625 202 EWGAHEVILMR--VVPVGLTRYNRPGIRPPTPHELEEFKEIVRE 243 (414)
T ss_pred HHCCCCEEEEE--EECCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 72867336898--6312115237777787787899999999999
No 106
>PRK00915 2-isopropylmalate synthase; Validated
Probab=78.07 E-value=6.8 Score=20.86 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCCEEEECCCEEEEEEEC-----HHHHHHHHH
Q ss_conf 089167014048876420-----688999999
Q gi|254780676|r 225 LDPLIFTKSGIMLGLGET-----RNEILQLMD 251 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLGEt-----~eEi~e~l~ 251 (329)
+|.+.. .|=+.|+||- -+||+-.|.
T Consensus 220 AGA~~V--~~TvnGiGERaGNa~Le~v~~~L~ 249 (511)
T PRK00915 220 GGARQV--ECTINGIGERAGNAALEEVVMALK 249 (511)
T ss_pred HCCCCE--EEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 390501--016960255556658899999998
No 107
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=77.79 E-value=6.9 Score=20.81 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHCCCHHHHHCC
Q ss_conf 999999999853358689981546234468-99987410702332013
Q gi|254780676|r 150 HFAEVISAIRESAPSTTIEVLTPDFLRKPH-ALEKVVSAKPDVFNHNL 196 (329)
Q Consensus 150 hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~-al~~v~~A~pdV~nHNi 196 (329)
...+.|++||+.. ++-||+=+-|-.|.-- ..-.-++||.|++.--+
T Consensus 184 ~~~eLV~aLk~~~-~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~ 230 (463)
T PRK12331 184 VAYELVKCIKENV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAI 230 (463)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999744-9856998368875799999999984999996235
No 108
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=77.69 E-value=6.9 Score=20.79 Aligned_cols=164 Identities=15% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCHHHH-HHHHHHHHHHCC--CE---EEEEC---CCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2353522344678-9988882357-999999997077--51---89850---5445345325899999999998533586
Q gi|254780676|r 96 CTRACTFCNVATG-KPQPLDPQEP-ENISWAVRSMKL--SH---VVITS---VDRDDLDDGGAQHFAEVISAIRESAPST 165 (329)
Q Consensus 96 CTR~C~FC~V~~G-~P~~~D~~EP-~rvA~av~~l~L--k~---vViTS---V~RDDL~DgGA~hfa~~I~~Ir~~~P~~ 165 (329)
|+-+|-+|..-.+ .|.++-.++- ..+-++..++.- .. -+-|| -|--..|++--.++.+.|.+.-.. -.+
T Consensus 61 ~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il~~is~~~~v-~~v 139 (358)
T COG1244 61 REGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYILERISENDNV-KEV 139 (358)
T ss_pred CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCE-EEE
T ss_conf 0587224265546688989889999999999997224478754999715665892448879999999997523660-278
Q ss_pred EEEEECCCCCC--CHHHHHHHHHCCCHHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE--
Q ss_conf 89981546234--4689998741070233201383000275--63897035899999999997089167014048876--
Q gi|254780676|r 166 TIEVLTPDFLR--KPHALEKVVSAKPDVFNHNLETVASNYL--MVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-- 239 (329)
Q Consensus 166 ~IEvLiPDf~G--~~~al~~v~~A~pdV~nHNiETV~rLy~--~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-- 239 (329)
.|| --|+|-. ..+.+.++++-.+--++--|||.-.--+ .|-.+.++++=++-.+.+|.+| +.+|+-+|+-.
T Consensus 140 vvE-SRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g--~~vktYlllKP~F 216 (358)
T COG1244 140 VVE-SRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYG--AKVKTYLLLKPPF 216 (358)
T ss_pred EEE-CCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCEEEEEEECCCC
T ss_conf 760-4710127899999998608953899971244748899876513886899999999999749--7515788831653
Q ss_pred ---EECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf ---4206889999999996699399750
Q gi|254780676|r 240 ---GETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 240 ---GEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
.|..+|++..+. ....|||.+.|.
T Consensus 217 lSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 217 LSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred CCHHHHHHHHHHHHH-HHCCCCCEEEEC
T ss_conf 476889999999999-743678758844
No 109
>PRK09248 putative hydrolase; Validated
Probab=77.20 E-value=7.2 Score=20.69 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCHHHHHHH--------
Q ss_conf 5799999999707751898505445345325899999999998533586----8998154623446899987--------
Q gi|254780676|r 117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPST----TIEVLTPDFLRKPHALEKV-------- 184 (329)
Q Consensus 117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~----~IEvLiPDf~G~~~al~~v-------- 184 (329)
.++..+++.+++||+|..||-=.. .++|+....+..-++.+.+..+++ .||+=|-|+.|..+.-+.+
T Consensus 20 ti~E~~~aA~~~Gl~~i~iTDH~p-~~~~~~~~~~~~~~~~~~r~~~~i~Il~GiE~dIl~~~G~lD~~~~~l~~lD~vI 98 (246)
T PRK09248 20 TLHENAAEAKQKGIKLFAITDHGP-DMPGAPHYWHFINLRVLPRFVDGVGILRGIEANIKNIDGEIDLPGSMLKKLDIVI 98 (246)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCEEE
T ss_conf 699999999986996899898996-6689710678866999898761741775444144688887485198996399999
Q ss_pred -----------------------HH-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCEEEEE
Q ss_conf -----------------------41-070233201383000275638970358999999999970891670-14048876
Q gi|254780676|r 185 -----------------------VS-AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT-KSGIMLGL 239 (329)
Q Consensus 185 -----------------------~~-A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T-KSGlMvGL 239 (329)
++ ...|+++|= =+|+..++ --.+++.+++.|--+-. -||+-...
T Consensus 99 aSvH~~~~~~~~~~~~t~~~i~ai~n~~vdiigHp----------~~~~~~~D-~e~v~~aa~e~g~~lEIN~s~~r~~r 167 (246)
T PRK09248 99 AGFHEPVFAPGDKETNTQAMINAIKSGRVDIIGHP----------GNPKYPID-IEAVVKAAAEHNVALEINNSSFKHSR 167 (246)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECC----------CCCCCCCC-HHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 98314446873799999999999857997689899----------99988858-99999999984969999588666677
Q ss_pred EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf 42068899999999966993997502227861007800023846999999999974962434048300103189999999
Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRL 319 (329)
Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~ 319 (329)
.+..+--.+.++-.++.||.| ||| |..|-|=+ -..|+.-...+.+.||.--. .+..|. |.|...
T Consensus 168 ~~~~~~~~~il~~a~~~Gv~i-~i~-----SDAH~~~~----vg~~~~~~~~ar~~g~~~e~---V~N~~~---e~~~~~ 231 (246)
T PRK09248 168 KGSEDNCRAIAALCKKAGVWV-ALG-----SDAHIAFD----IGRFEEALKLLDEVGFPEER---ILNVSP---RRLLDF 231 (246)
T ss_pred CCCCCCHHHHHHHHHHCCCEE-EEE-----CCCCCHHH----HCCHHHHHHHHHHCCCCHHH---EEECCH---HHHHHH
T ss_conf 876446899999999819939-985-----89888777----54599999999985999999---626899---999999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254780676|r 320 KNNRR 324 (329)
Q Consensus 320 ~~~~~ 324 (329)
..+|.
T Consensus 232 l~~r~ 236 (246)
T PRK09248 232 LESRG 236 (246)
T ss_pred HHHCC
T ss_conf 99829
No 110
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=76.38 E-value=3.9 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCHHHHHCCCCC
Q ss_conf 899987410702332013830
Q gi|254780676|r 179 HALEKVVSAKPDVFNHNLETV 199 (329)
Q Consensus 179 ~al~~v~~A~pdV~nHNiETV 199 (329)
..++.+.++|+|.+.=.+|+.
T Consensus 72 ~~i~~~~~~g~d~it~H~Ea~ 92 (210)
T PRK08005 72 RWLPWLAAIRPGWIFIHAESV 92 (210)
T ss_pred HHHHHHHHCCCCEEEEECCCC
T ss_conf 999999972998599935677
No 111
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=76.17 E-value=5.6 Score=21.46 Aligned_cols=82 Identities=23% Similarity=0.373 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEC--------CCCCCCC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHH
Q ss_conf 823579999999970775189850--------5445345-325899999999998533586899815462344-689998
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITS--------VDRDDLD-DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-PHALEK 183 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTS--------V~RDDL~-DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-~~al~~ 183 (329)
-.+-|++|+.-++...=.=+|||. =+.+||. =--+.||++||+..|...|.- =++.| |-|- --.-+.
T Consensus 147 E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSkyFv~~V~~aR~~~P~l-D~LVI--FAGACQShfE~ 223 (292)
T TIGR02855 147 EKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSKYFVETVREARKYVPSL-DQLVI--FAGACQSHFES 223 (292)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCHHH--HHCCCHHHHHH
T ss_conf 1218088999997309978999466630216787113642366568999999986317875-32343--32121445799
Q ss_pred HHHCC------CHHHH-HCCCC
Q ss_conf 74107------02332-01383
Q gi|254780676|r 184 VVSAK------PDVFN-HNLET 198 (329)
Q Consensus 184 v~~A~------pdV~n-HNiET 198 (329)
|+.|| |...| |=|.=
T Consensus 224 li~AGANFASSP~RVnIHaLDP 245 (292)
T TIGR02855 224 LIRAGANFASSPSRVNIHALDP 245 (292)
T ss_pred HHHHCCCCCCCCCCHHHHCCCH
T ss_conf 9974565457711011222673
No 112
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=75.29 E-value=8 Score=20.35 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf 988882357999999997077518985054453453258999999999985335868998154623446899
Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHAL 181 (329)
Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al 181 (329)
...+..---+.||+||....+ -|||.|-.. .|.- .+.-|.-.|...|..--|.++||+..-.+.|
T Consensus 88 ~eDL~~FN~e~laraI~~~~i--PvisaIGHE--tD~T---l~D~VAD~Ra~TPTaAAe~ivp~~~~l~~~l 152 (295)
T pfam02601 88 KEDLWVFNDEELARAIANSPI--PVITGIGHE--TDTT---IADLVADVRAATPTAAAELLVPDRTELLQKL 152 (295)
T ss_pred HHHHHHCCHHHHHHHHHHCCC--CEEECCCCC--CCCC---HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 898745588999999983899--878067889--9961---8888875005898999999654499999999
No 113
>KOG2550 consensus
Probab=74.53 E-value=7 Score=20.74 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 7077518985054453453258999999999985335868998154623446899987410702332
Q gi|254780676|r 127 SMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN 193 (329)
Q Consensus 127 ~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n 193 (329)
.-|+++|||-| ..|-+.++.+-|+.||+..|+..| .-.+--- .+..+.+++||.|.+-
T Consensus 261 ~aGvdvviLDS------SqGnS~~qiemik~iK~~yP~l~V--iaGNVVT-~~qa~nLI~aGaDgLr 318 (503)
T KOG2550 261 QAGVDVVILDS------SQGNSIYQLEMIKYIKETYPDLQI--IAGNVVT-KEQAANLIAAGADGLR 318 (503)
T ss_pred HCCCCEEEEEC------CCCCCHHHHHHHHHHHHHCCCCEE--ECCCEEE-HHHHHHHHHCCCCEEE
T ss_conf 34886899966------888504579999999866888634--3165533-8889999873676057
No 114
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=74.10 E-value=3.8 Score=22.65 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 8882357999999997077518---985054453453258999999999985-33586899815462344689998741
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHV---VITSVDRDDLDDGGAQHFAEVISAIRE-SAPSTTIEVLTPDFLRKPHALEKVVS 186 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~v---ViTSV~RDDL~DgGA~hfa~~I~~Ir~-~~P~~~IEvLiPDf~G~~~al~~v~~ 186 (329)
.....|-+|||+....|..|+= =|||||-=..-+- +..|-+||.+|.+ ..|++++|=+-=| -.|++-|.+
T Consensus 164 ~Y~~~Ei~RIaR~AFe~A~kr~~P~~vTSvDKANVL~s-S~LWR~~V~e~~~~eYPdv~L~H~yiD----nAAM~Lvk~ 237 (370)
T TIGR00169 164 VYTKPEIERIARVAFEMARKRRKPLKVTSVDKANVLES-SRLWRKTVEEIAKEEYPDVELEHQYID----NAAMQLVKS 237 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHH-HHHHHHHHHHHHHCCCCCEEECCCHHH----HHHHHHHCC
T ss_conf 13223567899999999985488985321001204554-378999999998468880573021587----887675328
No 115
>PRK05756 pyridoxamine kinase; Validated
Probab=73.87 E-value=6.5 Score=21.01 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 82357999999997077518985054453453
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDD 145 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D 145 (329)
+.++-.+.|++...||-+.|||||+...|.++
T Consensus 160 ~~~~~~~A~~~l~~~g~~~VvvtS~~~~~~~~ 191 (287)
T PRK05756 160 TLEDAVAAARALIARGPKIVLVTSLARAGYPA 191 (287)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 99999999999997199889991687777888
No 116
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.32 E-value=6.3 Score=21.07 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=68.4
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335868-998154623446899987410702332-0138300027
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT-IEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNY 203 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~-IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy 203 (329)
.+|||.-.++--=+.=..-.|++.-+.+.|+++|+..|... |||-+. +.+.++..+++++|++= -|+.
T Consensus 154 HR~~Lsd~iLIKdNHi~~~~g~~~~~~~~i~~~r~~~~~~~~IeVEv~----~l~~~~~a~~~g~D~ImLDnms------ 223 (281)
T PRK06543 154 HRYSLSDAVMVKDNHLAALAAQGLSLTEALRHVRAQLGHTTHVEVEVD----RLDQIEPVLAAGVDTIMLDNFT------ 223 (281)
T ss_pred CCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHCCCCEEEECCCC------
T ss_conf 678877528870646988547607899999999975899870999966----7887999997499999977989------
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHCCCEE-EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf 563897035899999999-99708916-7014048876420688999999999669939975022
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQR-VKELDPLI-FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~-aK~~~~~i-~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329)
.+-++. ++..++.+ .--||.+ + .+.+.+....|||++.+|.-
T Consensus 224 ------------~~~i~~av~~i~~~~~lEaSGgI-----~----~~ni~~yA~tGVD~IS~gal 267 (281)
T PRK06543 224 ------------LDQLREGVELIDGRAIVEASGNV-----S----LNTVPAIASTGVDVISVGAL 267 (281)
T ss_pred ------------HHHHHHHHHHHCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEECCHH
T ss_conf ------------99999999975793799998899-----9----99999999739999983820
No 117
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=72.84 E-value=9.1 Score=19.95 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=101.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHH--HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7269998665223535223446789--988882357999999997--077518985054453453258999999999985
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATGK--PQPLDPQEPENISWAVRS--MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRE 160 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G~--P~~~D~~EP~rvA~av~~--l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~ 160 (329)
|-.||-|-=.=|-=+|+||.=..-. +..-..-+-+.|-+-.++ .=|++||||. =-|=--|.-...-+++|++
T Consensus 15 G~~a~~iF~~GCn~~CpyCHN~~~~~~~~~~~~~~~e~~~~~L~~R~~ll~gVVitG----GEptlQ~~eL~d~~~~v~~ 90 (220)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNSELLIPRKGSGEIELEELLEFLRRRQGLLDGVVITG----GEPTLQAGELGDFLREVRE 90 (220)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC----CCHHHHHHHHHHHHHHHHH
T ss_conf 853688870278899878888764002005761027779999873134210578728----7532367778999999998
Q ss_pred -HCCCCEEEEECCCCCC-CHHHHHHHHHCC-CHHHHHCCCCCCCCCCCCC----CC-----------------CHHHHHH
Q ss_conf -3358689981546234-468999874107-0233201383000275638----97-----------------0358999
Q gi|254780676|r 161 -SAPSTTIEVLTPDFLR-KPHALEKVVSAK-PDVFNHNLETVASNYLMVR----PG-----------------ARYFHSL 216 (329)
Q Consensus 161 -~~P~~~IEvLiPDf~G-~~~al~~v~~A~-pdV~nHNiETV~rLy~~VR----p~-----------------a~Y~rSL 216 (329)
..=.+++.. .| +.+.|+.+++.+ .|-++=-+=+.+.-|+.+. .. +.+.+||
T Consensus 91 nlGf~vkLdT-----NG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tnisPsrtPe~l~~~~~~Sl 165 (220)
T TIGR02495 91 NLGFEVKLDT-----NGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNISPSRTPEKLLKNILKSL 165 (220)
T ss_pred HCCCEEEEEC-----CCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6592785606-----78867899999860487578750147865674000633210035324687756589999987556
Q ss_pred HHHHHHH---HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 9999999---70891670140488764206889999999996699
Q gi|254780676|r 217 RLLQRVK---ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329)
Q Consensus 217 ~vL~~aK---~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329)
++|...+ -....+. +-+.=++=+-.|++.++..=+++.++
T Consensus 166 Eil~~s~GCGGi~fE~R--TTV~~~~~~Geed~~ei~~~i~~~~~ 208 (220)
T TIGR02495 166 EILLESGGCGGIEFELR--TTVVRGLLDGEEDLAEIATRIKENGV 208 (220)
T ss_pred HHHHHCCCCCCCCCEEE--CCCCHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 75542478688653244--56552541652789999976322440
No 118
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=72.77 E-value=9.2 Score=19.93 Aligned_cols=115 Identities=24% Similarity=0.269 Sum_probs=56.0
Q ss_pred HHHHHHHCCC--HHHHHCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHH
Q ss_conf 9998741070--233201383000275638----9703589999999999708916701404887642068899999999
Q gi|254780676|r 180 ALEKVVSAKP--DVFNHNLETVASNYLMVR----PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDL 253 (329)
Q Consensus 180 al~~v~~A~p--dV~nHNiETV~rLy~~VR----p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DL 253 (329)
++..+.+.|- -.+|.|-|||--=|..-- ---++++=+++++.- +| .|+++-+|-. --+.+...|
T Consensus 579 a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E---~p-----~gvi~qfGGQ--t~~nla~~L 648 (1063)
T PRK05294 579 AALALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKE---KP-----KGVIVQFGGQ--TPLKLAKAL 648 (1063)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH---CC-----CEEEEECCCC--CHHHHHHHH
T ss_conf 9999996598158953781111156566761454368899999999975---89-----8799973883--678999999
Q ss_pred HHCCCCEEEC--------------CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
Q ss_conf 9669939975--------------022278610078000238469999999999749624340483001031
Q gi|254780676|r 254 RTADVDFLTM--------------GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYH 311 (329)
Q Consensus 254 r~~gvdilTi--------------GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~ 311 (329)
.+.|+.||-- .+-|.- -.++.-+|..-..+++-.++|.++||.. |||.||-
T Consensus 649 ~~~g~~ilGts~~~Id~aEDR~~F~~~l~~--l~i~qp~~~~a~s~~ea~~~a~~iGyPv-----lvRPSyV 713 (1063)
T PRK05294 649 EAAGVPILGTSPDAIDLAEDRERFQKLLEK--LGIKQPPNGTATSVEEALEIAEEIGYPV-----LVRPSYV 713 (1063)
T ss_pred HHCCCCEECCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCEECCHHHHHHHHHHCCCCE-----EECCCCC
T ss_conf 987994777887887878758889999986--5999999707668999999998649866-----8434310
No 119
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.67 E-value=9.7 Score=19.77 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEE--CCCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 882357999999997077518985--0544534532--589999999999853358689981546234468999874107
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVIT--SVDRDDLDDG--GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK 188 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViT--SV~RDDL~Dg--GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329)
.+++|-..+|+.+...|.....|- ++.-|-...+ -....++.+++||+...--.+==|+|++-.-.+..+.+.++|
T Consensus 111 ~s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~~~~~~~~~~~iv~~V~~~~~~Pv~vKLsPn~tdi~~iA~aa~~~G 190 (333)
T PRK07565 111 SSAGGWVDYARQIEEAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAG 190 (333)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99899999999997649988999766779886544465078899999999864688568735998210999999999749
Q ss_pred CHHH---H------HCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE--ECHHHHHHHHHHHHHC
Q ss_conf 0233---2------01383000275638-970358999999999970891670140488764--2068899999999966
Q gi|254780676|r 189 PDVF---N------HNLETVASNYLMVR-PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG--ETRNEILQLMDDLRTA 256 (329)
Q Consensus 189 pdV~---n------HNiETV~rLy~~VR-p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG--Et~eEi~e~l~DLr~~ 256 (329)
.|-+ | =++||.+-.-..+- ..+..--+|..+..+++.- ++ =++|.| .+.++++|.|. +
T Consensus 191 adgv~~iNT~~~~~Id~e~~~~~~~~~lSgp~~~~~alr~v~~v~~~~-~i-----pIiG~GGI~sg~DaiE~il----A 260 (333)
T PRK07565 191 ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-GA-----DLAATTGVHDAEDVIKMLL----A 260 (333)
T ss_pred CCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC-CC-----CEEEECCCCCHHHHHHHHH----C
T ss_conf 988998436665633155443736866677431207889999996046-98-----9888889598999999998----0
Q ss_pred CCCEEECCHHCCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHH
Q ss_conf 99399750222786100780002384699----99999999749624340--48300103189999
Q gi|254780676|r 257 DVDFLTMGQYLQPTRKHHKVESFVTPQDF----KSYETIAYSKGFLMVSA--SPLTRSSYHAGDDF 316 (329)
Q Consensus 257 gvdilTiGQYL~Ps~~h~pV~ryv~P~eF----~~~~~~a~~~Gf~~V~S--gPlVRSSY~A~e~~ 316 (329)
|.+.+-||--+.= .-|+-| ++++++-.+.||..+.. |-|-+.+--..+.|
T Consensus 261 GAsaVQv~Ta~~~----------~G~~v~~~i~~eL~~~m~~~G~~si~e~~G~l~~~~~~~~~~~ 316 (333)
T PRK07565 261 GADVVMIASALLR----------HGPDYIGTILAGLEDWMERHGYESLSQFRGSMSQKNVPDPAAF 316 (333)
T ss_pred CCCHHEEEHHHHH----------HCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHH
T ss_conf 9886336223665----------3727999999999999998399989996172365679983888
No 120
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=70.49 E-value=10 Score=19.59 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEE--CCCCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 82357999999997077518985--0544534--5325899999999998533586899815462344689998741070
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVIT--SVDRDDL--DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViT--SV~RDDL--~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329)
+++|=..+|+.++..|..+..+- ++.-|-. ..+-...+++.+++||+...--.+==|+|++---.+-.+.+.++|.
T Consensus 110 s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~~~~iv~~Vk~~~~~Pv~vKLsP~~~di~~ia~aa~~~GA 189 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGA 189 (325)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98999999999976499879996566788855442106889999999998607886699539983009999999997599
Q ss_pred HHH---H------HCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE--ECHHHHHHHHHHHHHCC
Q ss_conf 233---2------013830002756-38970358999999999970891670140488764--20688999999999669
Q gi|254780676|r 190 DVF---N------HNLETVASNYLM-VRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG--ETRNEILQLMDDLRTAD 257 (329)
Q Consensus 190 dV~---n------HNiETV~rLy~~-VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG--Et~eEi~e~l~DLr~~g 257 (329)
|-+ | =++||-+..... .-..+..-.+|..+..+... .++ =++|.| +|.++++|.|. +|
T Consensus 190 dgi~liNT~~~~~id~~~~~~~~~~~lSg~~~~~~alr~v~~~~~~-~~i-----pIiG~GGI~s~~Da~e~il----AG 259 (325)
T cd04739 190 DGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR-VKA-----SLAASGGVHDAEDVVKYLL----AG 259 (325)
T ss_pred CEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC-CCC-----CEEEECCCCCHHHHHHHHH----CC
T ss_conf 8899735766564216764153687745753006889999999646-898-----9888889598999999998----09
Q ss_pred CCEEECCHHCCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCCEEEC
Q ss_conf 9399750222786100780002384699----99999999749624340
Q gi|254780676|r 258 VDFLTMGQYLQPTRKHHKVESFVTPQDF----KSYETIAYSKGFLMVSA 302 (329)
Q Consensus 258 vdilTiGQYL~Ps~~h~pV~ryv~P~eF----~~~~~~a~~~Gf~~V~S 302 (329)
-+.+-||--+. |.-|+-| ++++++-.+.||..+..
T Consensus 260 AsaVQv~TA~~----------~~G~~i~~~i~~eL~~~m~~~G~~si~e 298 (325)
T cd04739 260 ADVVMTTSALL----------RHGPDYIGTLLAGLEAWMEEHGYESVQQ 298 (325)
T ss_pred CCHHHEEHHHH----------HHCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 88761432346----------4183799999999999999839997999
No 121
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=70.26 E-value=8 Score=20.35 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHC-CC----CEEEEECCCCCCC
Q ss_conf 999999998533-58----6899815462344
Q gi|254780676|r 151 FAEVISAIRESA-PS----TTIEVLTPDFLRK 177 (329)
Q Consensus 151 fa~~I~~Ir~~~-P~----~~IEvLiPDf~G~ 177 (329)
.+..||++|.+. |+ --|-|-+|||.|-
T Consensus 110 i~~~~r~~r~~hvp~~~g~~vv~VnTPDF~G~ 141 (451)
T TIGR01285 110 IARVVRQFREKHVPQLKGTEVVLVNTPDFKGS 141 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 37899999886405543962899877875462
No 122
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=69.79 E-value=11 Score=19.49 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHCCCHHHHH
Q ss_conf 99999999853358689981546234468-999874107023320
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTPDFLRKPH-ALEKVVSAKPDVFNH 194 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiPDf~G~~~-al~~v~~A~pdV~nH 194 (329)
....|++||+ .+++-||+=+-|--|.-. ..-.-++||.|++.-
T Consensus 194 a~~LV~~lK~-~~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~ 237 (468)
T PRK12581 194 AKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999983-6798659982588754999999999819999974
No 123
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.32 E-value=11 Score=19.42 Aligned_cols=192 Identities=15% Similarity=0.183 Sum_probs=101.3
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCC--------------------CCCCCCCC--------C
Q ss_conf 8999999997498236525788787675089726999866522--------------------35352234--------4
Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAIC--------------------TRACTFCN--------V 105 (329)
Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~C--------------------TR~C~FC~--------V 105 (329)
....+.+++..+.....+.-.+=.=|+....|+.-+.|-|+.- |+.-.|.+ +
T Consensus 57 ~~~~~~if~~~~~~~~~~~~~~~~dG~~v~~G~~i~~i~G~a~~iL~~ERvaLN~Lq~lSGIAT~T~~~v~~~~~~~~~i 136 (290)
T PRK06559 57 LTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKV 136 (290)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999985995499982336889994799999999956899999899999999999899999999999816899789
Q ss_pred C-CCCCCCCCHHHHHHHHHH-----HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCH
Q ss_conf 6-789988882357999999-----99707751898505445345325899999999998533586-8998154623446
Q gi|254780676|r 106 A-TGKPQPLDPQEPENISWA-----VRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPST-TIEVLTPDFLRKP 178 (329)
Q Consensus 106 ~-~G~P~~~D~~EP~rvA~a-----v~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~-~IEvLiPDf~G~~ 178 (329)
. |-| ..|..--.++-|-- ..+|||.-.|+--=+. |.-.| -+.+.|+.+|+..|.. .|||-+- +.
T Consensus 137 ~~TRK-T~PGlR~l~kyAV~~GGg~nHR~gLsd~vLIKdNH--l~~~g--~i~~av~~~r~~~~~~~kIeVEv~----~l 207 (290)
T PRK06559 137 FDTRK-TTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNH--IAAVG--SVQKAIAQARAYAPFVKMVEVEVE----SL 207 (290)
T ss_pred EECCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHH--HHHHC--CHHHHHHHHHHHCCCCCEEEEEEC----CH
T ss_conf 83567-88550799999999659105369850106765215--76515--799999999985898766999856----89
Q ss_pred HHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEECCCEEEEEEECHHHHHHHHHHHHHC
Q ss_conf 899987410702332-01383000275638970358999999999970891-6701404887642068899999999966
Q gi|254780676|r 179 HALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPL-IFTKSGIMLGLGETRNEILQLMDDLRTA 256 (329)
Q Consensus 179 ~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~-i~TKSGlMvGLGEt~eEi~e~l~DLr~~ 256 (329)
+.++..+++++|++= -|+. -.+..+.++.+ ++. ..--||.| + .+.+.+....
T Consensus 208 ~q~~~a~~~g~DiIlLDNms-----------~~~i~~av~~i------~~~~~lEaSGgI-----~----~~ni~~yA~t 261 (290)
T PRK06559 208 AAAEEAAAAGVDIIMLDNMS-----------LEQIEQAITLI------AGRSRIECSGNI-----D----MTTISRFRGL 261 (290)
T ss_pred HHHHHHHHCCCCEEEECCCC-----------HHHHHHHHHHH------CCCEEEEEECCC-----C----HHHHHHHHHC
T ss_conf 99999986699999987989-----------99999999985------796799997899-----8----9999999973
Q ss_pred CCCEEECCHH-CC--CCCCCCCCCCCC
Q ss_conf 9939975022-27--861007800023
Q gi|254780676|r 257 DVDFLTMGQY-LQ--PTRKHHKVESFV 280 (329)
Q Consensus 257 gvdilTiGQY-L~--Ps~~h~pV~ryv 280 (329)
|||++.+|-- -. |-.--+.+.||.
T Consensus 262 GVD~IS~g~Lthsa~~lD~sl~~~~~~ 288 (290)
T PRK06559 262 AIDYVSSGSLTHSAKSLDFSMKGLTYL 288 (290)
T ss_pred CCCEEECCHHCCCCCCCCCEEEEEEEC
T ss_conf 999998882206996416577016504
No 124
>KOG1321 consensus
Probab=67.99 E-value=5 Score=21.80 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=79.6
Q ss_pred HHHHHHHCCCEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH-HHHHHCCCHHHHHCCCCC
Q ss_conf 999997077518985054-453453258999999999985335868998154623446899-987410702332013830
Q gi|254780676|r 122 SWAVRSMKLSHVVITSVD-RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHAL-EKVVSAKPDVFNHNLETV 199 (329)
Q Consensus 122 A~av~~l~Lk~vViTSV~-RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al-~~v~~A~pdV~nHNiETV 199 (329)
-+-+++-|+.-+|.-|-- .=--.--|++ +-..-+.+|+..-...|+.-|=|=++..+-| +...+-=-+-+.|=-|+|
T Consensus 146 ~~qikkd~v~r~VafsqYPQyS~sTsGSS-ln~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~ 224 (395)
T KOG1321 146 LEQIKKDGVTRAVAFSQYPQYSCSTSGSS-LNELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPV 224 (395)
T ss_pred HHHHHHCCCEEEEEECCCCCEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99997527604786315875023157642-99999999844765688158605445551699999999999997468755
Q ss_pred CC----CC-------CCCCCCCHHHHHH-----HHHHHHHHCCCE---EEECCCEEEEEEECHHHHHHHHHHHHHCCCC-
Q ss_conf 00----27-------5638970358999-----999999970891---6701404887642068899999999966993-
Q gi|254780676|r 200 AS----NY-------LMVRPGARYFHSL-----RLLQRVKELDPL---IFTKSGIMLGLGETRNEILQLMDDLRTADVD- 259 (329)
Q Consensus 200 ~r----Ly-------~~VRp~a~Y~rSL-----~vL~~aK~~~~~---i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd- 259 (329)
+. || ..|-.+--|..-+ .+.+..+..++- --.|-|=|-=||--.||+++ +|-.-|+.
T Consensus 225 r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~---~lgk~g~kn 301 (395)
T KOG1321 225 RDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIE---GLGKKGVKN 301 (395)
T ss_pred CCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHH---HHHHHCCCC
T ss_conf 56479999447784787745897578999999999999613793024343036775445600589999---987612244
Q ss_pred EEECCHHCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCC---CCEEEC
Q ss_conf 9975022278610078000238469999-999999749---624340
Q gi|254780676|r 260 FLTMGQYLQPTRKHHKVESFVTPQDFKS-YETIAYSKG---FLMVSA 302 (329)
Q Consensus 260 ilTiGQYL~Ps~~h~pV~ryv~P~eF~~-~~~~a~~~G---f~~V~S 302 (329)
+|-+- ..=+..|+. |.+|.+- |.+.+.+.| |+-|+|
T Consensus 302 ll~VP--IaFvSeHIE-----TL~EiD~ey~e~a~k~gve~~~Rv~s 341 (395)
T KOG1321 302 LLLVP--IAFVSEHIE-----TLHEIDIEYIEEALKKGVENWKRVES 341 (395)
T ss_pred EEEEE--EHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHEECCC
T ss_conf 58975--216567787-----89984189999999976540101468
No 125
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=67.79 E-value=12 Score=19.21 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=27.0
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCEEEEECCC
Q ss_conf 89726999866522353522344678998888235799999999-7077518985054
Q gi|254780676|r 83 NKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVR-SMKLSHVVITSVD 139 (329)
Q Consensus 83 ~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~-~l~Lk~vViTSV~ 139 (329)
+.|.-.++++|. ||--..+..+|=.++.+++. ..+=+-.||..|.
T Consensus 37 ~~Gv~gi~v~Gs------------tGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg 82 (296)
T TIGR03249 37 GYGLEALFAAGG------------TGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HCCCCEEEECCC------------CCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 779998997830------------5166658999999999999998389841512786
No 126
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=67.14 E-value=12 Score=19.12 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=96.7
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCH--HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCH-HHHHCC
Q ss_conf 9999999707751898505445345325--8999999999985335868998154623446899987410702-332013
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDGG--AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPD-VFNHNL 196 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~DgG--A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pd-V~nHNi 196 (329)
.++|.....|+.+++| |+..|. -......+++++...-. .=|-+|+ .+...+++++|+|.+ |+--++
T Consensus 31 ~~~Ei~a~~G~Dfv~i------D~EHg~~~~~~l~~~i~a~~~~~~~--~lVRvp~--~~~~~i~r~LD~Ga~GvivP~V 100 (256)
T PRK10558 31 ITTEVLGLAGFDWLVL------DGEHAPNDVSTFIPQLMALKGSASA--PVVRVPT--NEPVIIKRLLDIGFYNFLIPFV 100 (256)
T ss_pred HHHHHHHCCCCCEEEE------CCCCCCCCHHHHHHHHHHHHHCCCC--CEEECCC--CCHHHHHHHHCCCCCEEEECCC
T ss_conf 9999997289899998------3778999999999999999717997--4896788--9889999997079875561476
Q ss_pred CCCCCCCCCCC----------------CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 83000275638----------------97035899999999997089167014048876420688999999999669939
Q gi|254780676|r 197 ETVASNYLMVR----------------PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF 260 (329)
Q Consensus 197 ETV~rLy~~VR----------------p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi 260 (329)
||++..-..|+ ..+.|.. .-.|.+..+.++. .+-+=||.+=|-+.=+=+.--|+|.
T Consensus 101 ~s~eea~~~V~a~~YpP~G~RG~~~~~ra~~yg~---~~~y~~~~n~~~~-----vi~qIEt~~av~nldeI~av~GvD~ 172 (256)
T PRK10558 101 ETAEEARRAVASTRYPPEGIRGVSVSHRANMFGT---VPDYFAQSNKNIT-----ILVQIESQQGVDNVDAIAATEGVDG 172 (256)
T ss_pred CCHHHHHHHHHHEEECCCCCCCCCCCCHHHHCCC---CHHHHHHHHHCCE-----EEEEECCHHHHHHHHHHHCCCCCCE
T ss_conf 9999999999874548999868777613430476---0799999764347-----8888536789988999967899888
Q ss_pred EECCHH-CCCCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCEEECCCCCCCCHHH
Q ss_conf 975022-27861007800023846999999999---97496243404830010318
Q gi|254780676|r 261 LTMGQY-LQPTRKHHKVESFVTPQDFKSYETIA---YSKGFLMVSASPLTRSSYHA 312 (329)
Q Consensus 261 lTiGQY-L~Ps~~h~pV~ryv~P~eF~~~~~~a---~~~Gf~~V~SgPlVRSSY~A 312 (329)
+-||-| |.=|..+. -.+-+|+-.+.++++. .+-| +..|-++++.-.|
T Consensus 173 ifiGp~DLs~slG~~--g~~~~pev~~ai~~v~~~~~~~g---k~~G~~~~~~~~a 223 (256)
T PRK10558 173 IFVGPSDLAAALGHL--GNASHPDVQKAIQHIFARAKAHG---KPSGILAPVEADA 223 (256)
T ss_pred EEECHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCHHHH
T ss_conf 998858999865999--99999799999999999999859---9879936999999
No 127
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.09 E-value=12 Score=19.12 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=37.4
Q ss_pred HHHHHHHHHH-CCCEEE--EC-C-----CEEEEEEECHHHHHHHHHHHHHCCCCEEECC--HHCCCCC
Q ss_conf 9999999997-089167--01-4-----0488764206889999999996699399750--2227861
Q gi|254780676|r 215 SLRLLQRVKE-LDPLIF--TK-S-----GIMLGLGETRNEILQLMDDLRTADVDFLTMG--QYLQPTR 271 (329)
Q Consensus 215 SL~vL~~aK~-~~~~i~--TK-S-----GlMvGLGEt~eEi~e~l~DLr~~gvdilTiG--QYL~Ps~ 271 (329)
-+++++.+++ .|+++. .| | ..-..+|++.||....+..|.+.|+|++-+. .|.+|+.
T Consensus 197 ~~Eii~aVr~~vg~df~vg~Ris~~~~~~~~~~~~~~~ee~~~~~~~l~~~GvD~i~~s~~~~~~p~~ 264 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF 264 (361)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 99999999997299875999967765767665567999999999999997799989841344567656
No 128
>PRK08176 pdxK pyridoxal kinase; Reviewed
Probab=66.95 E-value=11 Score=19.41 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCC--C-EEEEECCCCCCCCC-CHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 357999999997077--5-18985054453453-2589999999999853358689
Q gi|254780676|r 116 QEPENISWAVRSMKL--S-HVVITSVDRDDLDD-GGAQHFAEVISAIRESAPSTTI 167 (329)
Q Consensus 116 ~EP~rvA~av~~l~L--k-~vViTSV~RDDL~D-gGA~hfa~~I~~Ir~~~P~~~I 167 (329)
++-.-.-+....+++ . -.|+|.- |.+ ......++.|+++|+.||++.+
T Consensus 71 ~~~~~~l~~l~~~~~l~~~daI~TGy----lgs~~qi~~V~~~i~~~k~~~p~~~~ 122 (281)
T PRK08176 71 EWFAGYLRALQERDALRQLRAVTTGY----MGSASQIKILAEWLTALRADHPDLLI 122 (281)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC----CCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999759723478578610----49999999999999999732899769
No 129
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=13 Score=18.93 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=35.9
Q ss_pred EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCC--------C--HH-HHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 642068899999999966993997502227861007800023--------8--46-999999999974962434048300
Q gi|254780676|r 239 LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFV--------T--PQ-DFKSYETIAYSKGFLMVSASPLTR 307 (329)
Q Consensus 239 LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv--------~--P~-eF~~~~~~a~~~Gf~~V~SgPlVR 307 (329)
|--++--.++-+.+|.++|||.+-|--=+++.--...|.+-| . |. ....|.+.-...|+.....|=++.
T Consensus 224 ~s~~dl~~~~~l~~L~~~GV~s~KIeGR~k~~~yv~~v~~~yr~aid~~~~~~~~~~~~~~~~~~~~~~~r~~~~Gf~~~ 303 (347)
T COG0826 224 MSPKDLNLLEELPELIEAGVDSLKIEGRMKSIEYVARVVKAYRQAIDAAEEGDPLLFREALEEELEKNGNRGLTTGFYLG 303 (347)
T ss_pred ECCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 45201445776999997598489986876898999999999999998886388110025677776640465555337961
Q ss_pred C
Q ss_conf 1
Q gi|254780676|r 308 S 308 (329)
Q Consensus 308 S 308 (329)
.
T Consensus 304 ~ 304 (347)
T COG0826 304 N 304 (347)
T ss_pred C
T ss_conf 5
No 130
>KOG1588 consensus
Probab=65.13 E-value=3.8 Score=22.63 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHH--HHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 898824500179986689999999--974982365257887876750897269998665223535223446789988882
Q gi|254780676|r 38 MQKPDWIRVRAPVSSGYKETYNIL--RSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDP 115 (329)
Q Consensus 38 ~~kP~Wlk~~~p~~~~~~~~~~~l--~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~ 115 (329)
.+.-.=+.+++..-++|+.|-++| ++..|-.+|+|-.| .+||+|.-|+|.-.==.--.|+|..--.
T Consensus 90 vk~~~Kv~vPv~~yP~fNFVGRILGPrGnSlkrLe~eTgC------------ki~IrGrgSmrD~~KEE~lR~~p~yeHL 157 (259)
T KOG1588 90 VKLTEKVLVPVKEYPKFNFVGRILGPRGNSLKRLEEETGC------------KIMIRGRGSMRDKAKEEELRGDPGYEHL 157 (259)
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC------------EEEEECCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 1677888831577888761131106875319999998797------------6999668766665779985148466774
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHHHH
Q ss_conf 357999999997077518985054453453258999999999985335868998154623446--89998741
Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP--HALEKVVS 186 (329)
Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~--~al~~v~~ 186 (329)
+||. ||-|..++ =++--..-.+..+.+|++. |+||--+.. ++|..+..
T Consensus 158 ~epL------------HVlIe~~~---p~~ea~~rl~~AleeI~kl--------L~P~~e~~dk~~QL~ELa~ 207 (259)
T KOG1588 158 NEPL------------HVLIETEA---PPAEAYARLAYALEEIKKL--------LVPDHEDEDKREQLRELAI 207 (259)
T ss_pred CCCC------------EEEEEEEC---CHHHHHHHHHHHHHHHHHH--------CCCCCCCCHHHHHHHHHHH
T ss_conf 8872------------79999738---8899999999999999986--------3788777358999999864
No 131
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=65.08 E-value=7 Score=20.76 Aligned_cols=130 Identities=24% Similarity=0.251 Sum_probs=92.1
Q ss_pred HCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 0775189850-------544534532589999999999853358689981546234468999874107023320138300
Q gi|254780676|r 128 MKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA 200 (329)
Q Consensus 128 l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~ 200 (329)
-|-.=||||| -.||||----|...-+|+.+|-+.+|+.-|=++.-= .|++.-+.- -.
T Consensus 71 AnSDivViTaG~pRKPGMsReDL~s~Na~I~R~v~~~i~~~Spn~iIvvv~NP----lDaMTy~a~------------~~ 134 (308)
T TIGR01763 71 ANSDIVVITAGLPRKPGMSREDLVSVNADIVREVTSRIVEYSPNAIIVVVSNP----LDAMTYVAY------------KK 134 (308)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCC----HHHHHHHHH------------HH
T ss_conf 18837998167887547887899861334689999999731899689997180----578999999------------71
Q ss_pred CCCCCCC--------CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf 0275638--------97035899999999997089167014048876420688999999999669939975022278610
Q gi|254780676|r 201 SNYLMVR--------PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 201 rLy~~VR--------p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
+=+|+=| ..|.|+- =-|-|+|-.+.==+++.+| -||=+++.+=.|= +-.
T Consensus 135 SGfPKERVIG~aGVLD~ARfRt-----FiA~ElgvSv~DVta~vlG----------------GHGD~MVPlvrys--t~~ 191 (308)
T TIGR01763 135 SGFPKERVIGQAGVLDAARFRT-----FIAMELGVSVKDVTAFVLG----------------GHGDEMVPLVRYS--TVA 191 (308)
T ss_pred CCCCCCCEECCCCCHHHHHHHH-----HHHHHHCCCCEEEEEEEEC----------------CCCCCCCCCCCCC--EEC
T ss_conf 5897421323666101255677-----8888716731110054515----------------7476641555300--011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 078000238469999999999749
Q gi|254780676|r 273 HHKVESFVTPQDFKSYETIAYSKG 296 (329)
Q Consensus 273 h~pV~ryv~P~eF~~~~~~a~~~G 296 (329)
=.||..++++|..+++=|--.+=|
T Consensus 192 GIPv~~lI~~eRia~iVERTRkGG 215 (308)
T TIGR01763 192 GIPVEELIAKERIAEIVERTRKGG 215 (308)
T ss_pred CCCHHHCCCHHHHHHHHHHCCCCC
T ss_conf 665567176535888722005887
No 132
>PRK09389 (R)-citramalate synthase; Provisional
Probab=64.99 E-value=13 Score=18.84 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCC--CCHHHHHCCCCEEEEEECCC
Q ss_conf 7998668999999997498236525788--78767508972699986652
Q gi|254780676|r 48 APVSSGYKETYNILRSRNLTTVCEEAGC--PNIGECWNKNHATFMILGAI 95 (329)
Q Consensus 48 ~p~~~~~~~~~~~l~~~~L~TVCeeA~C--PNi~ECw~~gtATFMilG~~ 95 (329)
..+...+..++.+.+...=-.||-=++| .+|--+|..|..+.-|.+.+
T Consensus 46 ~~s~~d~e~v~~i~~~~~~~~i~~~~r~~~~di~~~~~a~~~~v~i~~~t 95 (487)
T PRK09389 46 ITSKGERESIKLVAEQGLNAEICSFARALKVDIDAALECDVDSVHLVVPT 95 (487)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 78843999999998479997899875564876999985797989999626
No 133
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.68 E-value=13 Score=18.80 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=75.0
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 51898505445345325899999999998533586899815462344689998741070233201383000275638970
Q gi|254780676|r 131 SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGA 210 (329)
Q Consensus 131 k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a 210 (329)
+=.|||| ++|-| +...++.++++.|.+.|.+.--=+||+..+ ..++.| ...+|..-+ ..+-=-+|-|.
T Consensus 137 ~IgvITS------~tgAa--~~Di~~~~~~R~p~~~i~l~p~~VQG~~A~-~~I~~a-i~~~~~~~~--~DvIIi~RGGG 204 (443)
T PRK00286 137 RIGVITS------PTGAA--IRDILTVLSRRFPSVEVIIYPTLVQGEGAA-ASIVEA-IERANARGE--VDVLIVARGGG 204 (443)
T ss_pred EEEEEEC------CCHHH--HHHHHHHHHCCCCCEEEEEEECCCCHHHHH-HHHHHH-HHHHHHHCC--CCEEEEECCCC
T ss_conf 7999836------84389--999999985049965999981456265479-999999-999852248--88899936878
Q ss_pred HHHH--H---HHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHH
Q ss_conf 3589--9---9999999970891670140488764-20688999999999669939975022278610078000238469
Q gi|254780676|r 211 RYFH--S---LRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQD 284 (329)
Q Consensus 211 ~Y~r--S---L~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~e 284 (329)
+.++ . -.|.+.+- ... .=++.|.| |||.-|.+..-|+|. ||+.. +.+++.|+.
T Consensus 205 S~eDL~~FNdE~varaI~--~s~----iPVISaIGHE~D~Ti~D~VAD~Ra-------------~TPTa--AAe~~~p~~ 263 (443)
T PRK00286 205 SLEDLWAFNDEAVARAIA--ASK----IPVISAVGHETDFTIADFVADLRA-------------PTPTA--AAELVVPDQ 263 (443)
T ss_pred CHHHHHHCCCHHHHHHHH--HCC----CCEEECCCCCCCCCHHHHHHHCCC-------------CCHHH--HHHHHCCCH
T ss_conf 888976518799999998--489----978951466777558888654037-------------99699--999865319
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780676|r 285 FKSYETI 291 (329)
Q Consensus 285 F~~~~~~ 291 (329)
.+.+..+
T Consensus 264 ~e~~~~l 270 (443)
T PRK00286 264 AELLQRL 270 (443)
T ss_pred HHHHHHH
T ss_conf 9999999
No 134
>PRK13124 consensus
Probab=64.11 E-value=14 Score=18.73 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=21.8
Q ss_pred HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 999999970891670140488764206889999999996699399750222
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
+.++++|+. |+--+.+|.|=..-|-++.+ .+. .|-+-+|-.+
T Consensus 185 ~~i~~ik~~-----t~~Pv~vGFGI~~~e~v~~~---~~~-ADGvIVGSai 226 (257)
T PRK13124 185 EFIRTVKQY-----SNVPVAVGFGISTPEQVQKM---KEI-ADGVVVGSAL 226 (257)
T ss_pred HHHHHHHHC-----CCCCEEEEECCCCHHHHHHH---HHH-CCEEEECHHH
T ss_conf 999999861-----79983898446999999999---801-9999982899
No 135
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=63.61 E-value=14 Score=18.67 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=81.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC---
Q ss_conf 99999999707751898505445345325899999999998533586899815462344689998741070233201---
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN--- 195 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN--- 195 (329)
...++++.+.|.++++| |..+|-...+.+.|+.||+..|++.|= . .=-...+..+.++++|.|.+-=.
T Consensus 96 ~~r~~~l~~ag~d~i~I------DvAhG~~~~~~~~ik~ir~~~p~~~Ii--a-GNV~T~e~a~~L~~~GaD~vkVGiG~ 166 (325)
T cd00381 96 KERAEALVEAGVDVIVI------DSAHGHSVYVIEMIKFIKKKYPNVDVI--A-GNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred HHHHHHHHHCCCCEEEE------ECHHCCCHHHHHHHHHHHHHCCCCCEE--E-CCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999999769989998------700034588999999999768997568--6-45668999999986699899975757
Q ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf --38300027563897035899999999997089167014048876420688999999999669939975022278610
Q gi|254780676|r 196 --LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 196 --iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
+=|-+.....-+||.+ --+++-+.+++.+-.|..--|+ - +.-+|..++ .+|-|.+-+|-+|.=+..
T Consensus 167 GS~CtTr~~tGvG~Pq~s--ai~~~a~~~~~~~v~iiaDGGi-~----~~Gdi~KAl----a~GAd~VMlG~~lAg~~E 234 (325)
T cd00381 167 GSICTTRIVTGVGVPQAT--AVADVAAAARDYGVPVIADGGI-R----TSGDIVKAL----AAGADAVMLGSLLAGTDE 234 (325)
T ss_pred CCCCCCCCCCCCCCCHHH--HHHHHHHHHHCCCCCEEECCCC-C----CHHHHHHHH----HCCCCEEEECCHHCCCCC
T ss_conf 777666010178874588--9999999763449858944873-3----107888887----528878984621046666
No 136
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=63.05 E-value=14 Score=18.60 Aligned_cols=152 Identities=19% Similarity=0.262 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|+++-..++++...-|++.+=||--+- .+.+.|+++++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 12 ~~~~~~a~~~~~al~~~Gi~~iEitl~t~---------~a~~~i~~l~~~~~~~~iGaGTV---~~~~~~~~a~~aGa~F 79 (190)
T cd00452 12 GDDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTV---LTPEQADAAIAAGAQF 79 (190)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC---------HHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHCCCCE
T ss_conf 79999999999999986998899967880---------29999999998689808965234---7799999999859989
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|+. ..++++++++.+ +..--|.| |..|+.+++ ++|++++-+ -
T Consensus 80 i-------------vsP~~----~~~v~~~a~~~~--~~~iPGv~-----TpsEi~~A~----~~G~~~vK~FPa~~~G~ 131 (190)
T cd00452 80 I-------------VSPGL----DPEVVKAANRAG--IPLLPGVA-----TPTEIMQAL----ELGADIVKLFPAEAVGP 131 (190)
T ss_pred E-------------ECCCC----CHHHHHHHHHCC--CCEECCCC-----CHHHHHHHH----HCCCCEEEECCCCCCCH
T ss_conf 9-------------73779----999999999829--96657879-----999999999----87999899895511499
Q ss_pred HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 222786100780002-----3846999999999974962434048300
Q gi|254780676|r 265 QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTR 307 (329)
Q Consensus 265 QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVR 307 (329)
.|++-=+.-+|-.++ ++++-+.+|-+. |...|--|-.+.
T Consensus 132 ~~lkal~~pfp~~~~~ptGGI~~~N~~~yl~~----gv~avG~g~~l~ 175 (190)
T cd00452 132 AYIKALKGPFPQVRFMPTGGVSLDNAAEWLAA----GVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHC----CCEEEEECHHCC
T ss_conf 99999855489993899679998889999968----998999541258
No 137
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=62.48 E-value=14 Score=18.53 Aligned_cols=187 Identities=17% Similarity=0.273 Sum_probs=102.7
Q ss_pred CCCCCCCCCC--CCHHHCCCCCCCHHHHHHHHHHHHCCCCEE--ECCCCCCCHHHHHCCCCEEEEEECCCCC---CCCCC
Q ss_conf 1488888889--882450017998668999999997498236--5257887876750897269998665223---53522
Q gi|254780676|r 30 IHKPDTEKMQ--KPDWIRVRAPVSSGYKETYNILRSRNLTTV--CEEAGCPNIGECWNKNHATFMILGAICT---RACTF 102 (329)
Q Consensus 30 ~~~p~~~~~~--kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TV--CeeA~CPNi~ECw~~gtATFMilG~~CT---R~C~F 102 (329)
+++-++.... .| .+..|. ....++..+...++..-+ -+.+. ..|.-|==++|=+|. |.-+|
T Consensus 79 VKr~e~g~i~redp---~t~~P~-~tv~~~~~l~~~~gisG~PVv~~G~--------~~g~ktGKLvGIiT~sqWrD~~f 146 (476)
T TIGR01302 79 VKRAENGIISREDP---VTISPE-TTVEDVLELMERKGISGIPVVEDGK--------DGGPKTGKLVGIITKSQWRDVRF 146 (476)
T ss_pred HHHHCCCEEEECCC---EEECCC-CHHHHHHHHCCCCCCCEEEEEECCC--------CCCCCEEEEEEEEECCCEEECCC
T ss_conf 52320660651488---684798-5189999732215765457883688--------98971006999983772254110
Q ss_pred CCCCCCCCC-----------CCCHHHHHHHHHHHHHHC---CCEEEE--------ECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 344678998-----------888235799999999707---751898--------5054453453258999999999985
Q gi|254780676|r 103 CNVATGKPQ-----------PLDPQEPENISWAVRSMK---LSHVVI--------TSVDRDDLDDGGAQHFAEVISAIRE 160 (329)
Q Consensus 103 C~V~~G~P~-----------~~D~~EP~rvA~av~~l~---Lk~vVi--------TSV~RDDL~DgGA~hfa~~I~~Ir~ 160 (329)
-. +++.|. -+=--||..+-+|.+.|. ..+.+| --|+++|+--- +
T Consensus 147 ~~-~~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r~ekLpvVd~~~~lVgLiT~~Di~~~-------------~ 212 (476)
T TIGR01302 147 VK-DKGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHRIEKLPVVDKDGELVGLITVKDIVKR-------------R 212 (476)
T ss_pred CC-CCCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH-------------H
T ss_conf 10-468833010112037643484167778999999886086504788278988999864478898-------------6
Q ss_pred HCCCC-----------EEE--EECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 33586-----------899--8154623446899987410702332013830002756389-703589999999999708
Q gi|254780676|r 161 SAPST-----------TIE--VLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRP-GARYFHSLRLLQRVKELD 226 (329)
Q Consensus 161 ~~P~~-----------~IE--vLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~ 226 (329)
..|+. .|= +=+-| .+.+.+..|.+||.||+= |=+ +++=..-|+.++++|+.-
T Consensus 213 ~~P~A~kd~vG~~GrL~VgAAvg~r~--~D~~R~~~L~~AGvDv~v------------iDsshGhs~~vl~~ik~~k~~Y 278 (476)
T TIGR01302 213 EFPHASKDTVGENGRLIVGAAVGTRE--DDLERAEALVEAGVDVIV------------IDSSHGHSIYVLDSIKKIKKTY 278 (476)
T ss_pred HCCCCCCCCCCCCCEEEEEEEECCCC--CCHHHHHHHHHCCCCEEE------------EECCCCCCHHHHHHHHHHHHHC
T ss_conf 38887788748886089998846898--618999999965965899------------8166545378999999998638
Q ss_pred CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 91670140488764206889999999996699399750
Q gi|254780676|r 227 PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 227 ~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
|++- ++.|===|. +..++|-++|+|-|=+|
T Consensus 279 p~~~----iiaGNVaT~----~~a~~LI~AgADg~rVG 308 (476)
T TIGR01302 279 PDLD----IIAGNVATA----EQAKALIDAGADGLRVG 308 (476)
T ss_pred CEEE----EEECCCCCH----HHHHHHHHCCCCEEEEC
T ss_conf 8057----994344117----88988985288878983
No 138
>PRK04326 methionine synthase; Provisional
Probab=62.21 E-value=7.9 Score=20.41 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCCCHHHCCCCC-------CCHHHH-----HHHHHH---HHCCCCEEECC-CCCCCHHHHHCCCCEEEEEECC------
Q ss_conf 8898824500179-------986689-----999999---97498236525-7887876750897269998665------
Q gi|254780676|r 37 KMQKPDWIRVRAP-------VSSGYK-----ETYNIL---RSRNLTTVCEE-AGCPNIGECWNKNHATFMILGA------ 94 (329)
Q Consensus 37 ~~~kP~Wlk~~~p-------~~~~~~-----~~~~~l---~~~~L~TVCee-A~CPNi~ECw~~gtATFMilG~------ 94 (329)
...+|+||+--.. +.+.+. .++.++ .+.+|.-|..- -+=.+...=|..+-..|-..|.
T Consensus 16 S~pRp~~L~~a~~~~~~g~i~~~el~~~~~~ai~~~V~~Q~~aGldiitDGE~rr~~~~~~f~~~l~Gf~~~~~~~~~~~ 95 (330)
T PRK04326 16 SYPKPKWLLEAIKLREAGKIPEEDLHEAVDDASRLVVRDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGN 95 (330)
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCEEECCC
T ss_conf 89699999999999775999999999999999999999999809980126982010267888752855873684786587
Q ss_pred CCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHH-HHCCCEEEEECC-------------CCCCCCCCHHHHHHHHHHH
Q ss_conf 22353522344678998---888235799999999-707751898505-------------4453453258999999999
Q gi|254780676|r 95 ICTRACTFCNVATGKPQ---PLDPQEPENISWAVR-SMKLSHVVITSV-------------DRDDLDDGGAQHFAEVISA 157 (329)
Q Consensus 95 ~CTR~C~FC~V~~G~P~---~~D~~EP~rvA~av~-~l~Lk~vViTSV-------------~RDDL~DgGA~hfa~~I~~ 157 (329)
...|. .+-+|+.. ++..++ -+-+..+. .-.+| +.|+|. +++++-+-=|.-+.+-|++
T Consensus 96 ~~~~~----p~v~g~i~~~~~~~~~~-~k~~~~~~~~~~~K-~tipgP~t~~~~~~~~~Y~~~ee~~~dla~a~~~Ei~~ 169 (330)
T PRK04326 96 AYFRK----PSVVGKIEYKEPMLVDE-FEFAKSVTYRPPVK-VPITGPYTIAEWSFNEYYDDKRELAFDLAKVINKEIKN 169 (330)
T ss_pred CCEEC----CEEECCCCCCCCCCHHH-HHHHHHHCCCCCCC-EEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 54007----81507876889881799-99999635899973-68489899874204433799999999999999999999
Q ss_pred HHHHCCCCE-EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 985335868-998154623446899987410702332013830002-7563897035899999999
Q gi|254780676|r 158 IRESAPSTT-IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASN-YLMVRPGARYFHSLRLLQR 221 (329)
Q Consensus 158 Ir~~~P~~~-IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rL-y~~VRp~a~Y~rSL~vL~~ 221 (329)
+-+. |+. |.+=-|.+....+.++.. .+.+|+-++.++-- -=.+| ..+|+.-+..|..
T Consensus 170 L~~a--G~~~IQiDeP~l~~~~~~~~~~----~ea~n~~~~~~~~~i~~HiC-~Gny~~i~~~l~~ 228 (330)
T PRK04326 170 LVEA--GARYIQIDEPALHTHPEEVEIA----KEALNIIVKGIDVKLGLHVC-YGDYSRLAPYILE 228 (330)
T ss_pred HHHC--CCCEEEECCCCHHCCHHHHHHH----HHHHHHHHCCCCCEEEEEEC-CCCHHHHHHHHHH
T ss_conf 9987--9989996585200398899999----99999972789977999954-7766889999970
No 139
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=61.69 E-value=15 Score=18.44 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 750897269998665223535223446789----98888235799999999707---75189850544534532589999
Q gi|254780676|r 80 ECWNKNHATFMILGAICTRACTFCNVATGK----PQPLDPQEPENISWAVRSMK---LSHVVITSVDRDDLDDGGAQHFA 152 (329)
Q Consensus 80 ECw~~gtATFMilG~~CTR~C~FC~V~~G~----P~~~D~~EP~rvA~av~~l~---Lk~vViTSV~RDDL~DgGA~hfa 152 (329)
|=-..|..+.-|==.-|.-+|.||+....- -....+..+..+++.++.++ ..||+||.=-= |-. ..+.
T Consensus 16 EG~~~G~p~vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~V~iTGGEP--llq---~~~~ 90 (238)
T TIGR03365 16 EGMVIGQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNP--ALQ---KPLG 90 (238)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCH--HHH---CCHH
T ss_conf 88133731899940898986765898876178788775637899999999983489861899459983--444---1899
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999985335868998
Q gi|254780676|r 153 EVISAIRESAPSTTIEV 169 (329)
Q Consensus 153 ~~I~~Ir~~~P~~~IEv 169 (329)
.-++..++....+.||.
T Consensus 91 ~L~~~l~~~g~~v~iET 107 (238)
T TIGR03365 91 ELIDLGKAKGYRFALET 107 (238)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999985798499978
No 140
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=61.35 E-value=15 Score=18.40 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHCCCE--EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCH
Q ss_conf 88235799999999707751--8985054453453258999999999985335868998154623446899987410702
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSH--VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPD 190 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~--vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pd 190 (329)
.-..+-+|+++...++..+. --+|+|+--..--.....|.++.++|.+..|++..|-+.= |+.-.-+-.+|+
T Consensus 144 ~tr~~~~Ri~r~AF~~A~~~~rk~Vt~v~KaNvl~~~~glf~~~~~eva~~yP~i~~~~~~v------Da~~~~lv~~P~ 217 (334)
T PRK08997 144 ITRQGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIV------DATCMQLVMNPE 217 (334)
T ss_pred ECHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEH------HHHHHHHHCCHH
T ss_conf 65777637999999999963998358998443113257899999999986568865898769------999999961934
Q ss_pred HHH
Q ss_conf 332
Q gi|254780676|r 191 VFN 193 (329)
Q Consensus 191 V~n 193 (329)
.|.
T Consensus 218 ~fD 220 (334)
T PRK08997 218 QFD 220 (334)
T ss_pred HCC
T ss_conf 376
No 141
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.40 E-value=16 Score=18.29 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=55.6
Q ss_pred CCCCCCC-CCCC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 3522344-6789-9888823579999999970775189850544534532589999999999853358689981546234
Q gi|254780676|r 99 ACTFCNV-ATGK-PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR 176 (329)
Q Consensus 99 ~C~FC~V-~~G~-P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G 176 (329)
.|.|+-. ..|+ +..+|. ..-|..++++|.--.++||.|||-...|=- -+-+++|++ .+.|-|..+.=.|
T Consensus 139 ~~~~~v~~~gGr~~t~~d~---~eWa~~~e~~GAGEIlLtsmD~DGtk~GyD---l~l~~~v~~---~v~iPvIASGGaG 209 (256)
T COG0107 139 NGWYEVFTHGGREDTGLDA---VEWAKEVEELGAGEILLTSMDRDGTKAGYD---LELTRAVRE---AVNIPVIASGGAG 209 (256)
T ss_pred CCCEEEEECCCCCCCCCCH---HHHHHHHHHCCCCEEEEEEECCCCCCCCCC---HHHHHHHHH---HCCCCEEECCCCC
T ss_conf 8767999668975688579---999999997388548786355656536757---999999996---4887889118989
Q ss_pred CHHHHHHHHHCC
Q ss_conf 468999874107
Q gi|254780676|r 177 KPHALEKVVSAK 188 (329)
Q Consensus 177 ~~~al~~v~~A~ 188 (329)
+.+.+-.++..+
T Consensus 210 ~~ehf~eaf~~~ 221 (256)
T COG0107 210 KPEHFVEAFTEG 221 (256)
T ss_pred CHHHHHHHHHHC
T ss_conf 688999999815
No 142
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.20 E-value=16 Score=18.26 Aligned_cols=63 Identities=25% Similarity=0.431 Sum_probs=38.0
Q ss_pred CCHHHHH----HHHHHHHHHC-CCEEEECCCEEE------EEEECHHHHHHHHHHHHHCCCCEEEC--CHHCCCCCCC
Q ss_conf 7035899----9999999970-891670140488------76420688999999999669939975--0222786100
Q gi|254780676|r 209 GARYFHS----LRLLQRVKEL-DPLIFTKSGIML------GLGETRNEILQLMDDLRTADVDFLTM--GQYLQPTRKH 273 (329)
Q Consensus 209 ~a~Y~rS----L~vL~~aK~~-~~~i~TKSGlMv------GLGEt~eEi~e~l~DLr~~gvdilTi--GQYL~Ps~~h 273 (329)
+.+.+.+ |++++.+|+. ++++. =|+=+ --|-+.+|.++.++.|.+.|+|.+.+ |.|..|....
T Consensus 192 GGS~ENR~Rf~lEii~avr~~vg~d~~--v~~Ris~~d~~~~G~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~ 267 (338)
T cd04733 192 GGSLENRARLLLEIYDAIRAAVGPGFP--VGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAG 267 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCE--EEEEECHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 989889988999999999997199886--9998453542479999899999999998769988994688545732247
No 143
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=60.11 E-value=14 Score=18.53 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHCC--C-EEEEECCCCCCCCC-CHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 882357999999997077--5-18985054453453-25899999999998533586899
Q gi|254780676|r 113 LDPQEPENISWAVRSMKL--S-HVVITSVDRDDLDD-GGAQHFAEVISAIRESAPSTTIE 168 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~L--k-~vViTSV~RDDL~D-gGA~hfa~~I~~Ir~~~P~~~IE 168 (329)
.+.++-..+-+..+.+++ + -+++|.- |.+ .-.+..++.|+++|+.+|++.+=
T Consensus 52 ~~~~~l~~~l~~~~~~~~~~~~daI~tGy----l~s~~~i~~v~~~i~~~k~~~~~~~~v 107 (254)
T cd01173 52 LSAEELEDLLEGLEALGLLLEYDAVLTGY----LGSAEQVEAVAEIVKRLKEKNPNLLYV 107 (254)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECC----CCCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 88999999999999749866699999911----699999999999999986248987389
No 144
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.78 E-value=16 Score=18.21 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCH-HHHHCCCCCCCC
Q ss_conf 999999985335868998154623446899987410702-332013830002
Q gi|254780676|r 152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPD-VFNHNLETVASN 202 (329)
Q Consensus 152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pd-V~nHNiETV~rL 202 (329)
.+.++.+|+.||++.|=+-+.| .+..+.+.++|.| |+..+.|+-.++
T Consensus 496 ~~iv~~~r~~~p~~~IiaRa~~----~~~~~~L~~aGA~~VV~~~~e~a~~m 543 (558)
T PRK10669 496 GEIVASAREKNPDIEIIARAHY----DDEVAYITERGANQVVMGEREIARTM 543 (558)
T ss_pred HHHHHHHHHHCCCCEEEEEECC----HHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 9999999987869869999798----99999999779998989378999999
No 145
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.20 E-value=12 Score=19.08 Aligned_cols=87 Identities=16% Similarity=0.258 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999985335868998154623446899987410702332-013830002756389703589999999999708916
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
....++++|...|+..|||-+-.| +.+..++++++|++= -| -+-+.-=+..+..+...+++
T Consensus 170 ~~~~v~~~k~~~~~~kIeVEv~~~----~q~~~a~~~g~d~I~LDn--------------~s~~~ik~~v~~~~~~~~~v 231 (272)
T cd01573 170 PLKALARLRATAPEKKIVVEVDSL----EEALAAAEAGADILQLDK--------------FSPEELAELVPKLRSLAPPV 231 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHCCCCEEEECC--------------CCHHHHHHHHHHHHCCCCCE
T ss_conf 999999998629997089983999----999999846999999779--------------99999999999974448876
Q ss_pred E-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 7-0140488764206889999999996699399750
Q gi|254780676|r 230 F-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 230 ~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
. --||.+ | .+.+.+..+.|||++..|
T Consensus 232 ~ieaSGgI-----~----~~ni~~yA~tGvD~Is~~ 258 (272)
T cd01573 232 LLAAAGGI-----N----IENAAAYAAAGADILVTS 258 (272)
T ss_pred EEEEECCC-----C----HHHHHHHHHCCCCEEECC
T ss_conf 99998999-----9----999999997399999808
No 146
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=58.74 E-value=12 Score=19.12 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.7
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9850544534532589999999999853358689981546234
Q gi|254780676|r 134 VITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR 176 (329)
Q Consensus 134 ViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G 176 (329)
|+.+=++ .-..--..|.+|+.++++.||++.||||+--+-|
T Consensus 83 V~D~q~~--~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~ 123 (230)
T pfam04670 83 VFDVESR--EYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDL 123 (230)
T ss_pred EEECCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 9968886--0999999999999999983999889999960358
No 147
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=58.58 E-value=17 Score=18.08 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE-EEECCCCCC---CHHHHHHHHHC
Q ss_conf 88823579999999970775189850544534532589999999999853358689-981546234---46899987410
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTI-EVLTPDFLR---KPHALEKVVSA 187 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~I-EvLiPDf~G---~~~al~~v~~A 187 (329)
..+..|-.+.|+..+.+|...+.++..----..+.+.-.|.+.|.+ .. +.-| =--+|++.| ..+.+.++.+
T Consensus 79 ~~st~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~i~~~~~~va~---a~-~lPi~iYn~P~~tg~~l~~~~l~~L~~- 153 (289)
T pfam00701 79 SNSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHFKAIAA---AT-DLPVILYNVPSRTGQDLTPETIERLAE- 153 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH---CC-CCCEEEEECCCCCCCCCCHHHHHHHHC-
T ss_conf 8789999999999997499978877998889999999999999983---15-997799715654033679999999826-
Q ss_pred CCHHHH
Q ss_conf 702332
Q gi|254780676|r 188 KPDVFN 193 (329)
Q Consensus 188 ~pdV~n 193 (329)
-|.|..
T Consensus 154 ~~~i~g 159 (289)
T pfam00701 154 CPNVVG 159 (289)
T ss_pred CCCEEE
T ss_conf 899899
No 148
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=58.55 E-value=15 Score=18.38 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 05445345325899999999998533586899815
Q gi|254780676|r 137 SVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 137 SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
.-+|+||-..-+..|.+.++.|++.+|+..|=+.+
T Consensus 85 g~~R~dll~~N~~I~~~i~~~i~~~~p~a~iivvt 119 (263)
T cd00650 85 GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 98765664032889999988887329983699738
No 149
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.19 E-value=17 Score=18.03 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEC---CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC----------CCCCCCCHHHHHHH
Q ss_conf 999999998533586899815---46234468999874107023320138300027----------56389703589999
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLT---PDFLRKPHALEKVVSAKPDVFNHNLETVASNY----------LMVRPGARYFHSLR 217 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLi---PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy----------~~VRp~a~Y~rSL~ 217 (329)
+..+..+.+..+-...|--++ ||+..-.+.++.+.++|.|++-=-+=.+.-++ +..+.+-+-++.|+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 89999999973789748889488999899999999998679888996688888676688999989999977998899999
Q ss_pred HHHHHHHCCCEEEECCCEEEEEEECHH-HHHHHHHHHHHCCCCEEECC--------HHCCCCCC-CCCCCCCCCHHH-HH
Q ss_conf 999999708916701404887642068-89999999996699399750--------22278610-078000238469-99
Q gi|254780676|r 218 LLQRVKELDPLIFTKSGIMLGLGETRN-EILQLMDDLRTADVDFLTMG--------QYLQPTRK-HHKVESFVTPQD-FK 286 (329)
Q Consensus 218 vL~~aK~~~~~i~TKSGlMvGLGEt~e-Ei~e~l~DLr~~gvdilTiG--------QYL~Ps~~-h~pV~ryv~P~e-F~ 286 (329)
+++.+++.+.+++ =++|.=.-.-.. -+..-++++.++|||=+-|= .+.+...+ -+....+++|.. .+
T Consensus 84 l~~~~r~~~~~~P--ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~ 161 (265)
T COG0159 84 LVEEIRAKGVKVP--IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDE 161 (265)
T ss_pred HHHHHHHCCCCCC--EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 9999986189998--89987011887735999999999759987985789866777899999976986798869999989
Q ss_pred HHHHHHHH-CCCCEEECCC
Q ss_conf 99999997-4962434048
Q gi|254780676|r 287 SYETIAYS-KGFLMVSASP 304 (329)
Q Consensus 287 ~~~~~a~~-~Gf~~V~SgP 304 (329)
.+++++.. -||-+..|--
T Consensus 162 rl~~i~~~a~GFiY~vs~~ 180 (265)
T COG0159 162 RLKKIAEAASGFIYYVSRM 180 (265)
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 9999997479858999666
No 150
>PRK06438 hypothetical protein; Provisional
Probab=57.83 E-value=9.5 Score=19.83 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999985335868998154
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTP 172 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiP 172 (329)
+++.+..|-+...-..++..=|
T Consensus 157 ~~~v~~~ilke~~~~~v~l~ep 178 (292)
T PRK06438 157 LVNIYSRILDIFSIKNVVLLDV 178 (292)
T ss_pred HHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999998517650677520
No 151
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671 The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides. Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine. This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=57.79 E-value=17 Score=17.99 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=52.0
Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE---EECCCCCCCCHHH-HHHH
Q ss_conf 20688999999999669939975022278610078000238469999999999749624---3404830010318-9999
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLM---VSASPLTRSSYHA-GDDF 316 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~---V~SgPlVRSSY~A-~e~~ 316 (329)
=|-+|=++....|-.+||||+=.| .||. +|-.|+-.+++|...+=.. |.+ |.|--=.= +=+|
T Consensus 20 l~v~EKL~iA~~LerLGVDiiEaG---------FP~s---S~GDFEaVq~IA~~vk~~~GPvv~g--LARav~kDIdaA~ 85 (514)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAG---------FPVS---SPGDFEAVQRIARTVKNPRGPVVCG--LARAVEKDIDAAA 85 (514)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC---------CCCC---CCCHHHHHHHHHHHHCCCCCCEEEE--HHHHHHHHHHHHH
T ss_conf 107999999999986298489836---------7778---8510689999998617888867740--3440023589999
Q ss_pred HHHH--HHHHHHCC
Q ss_conf 9999--99854137
Q gi|254780676|r 317 LRLK--NNRRQHLH 328 (329)
Q Consensus 317 ~~~~--~~~~~~~~ 328 (329)
+.|+ ...+..||
T Consensus 86 EALKdr~a~~~RIH 99 (514)
T TIGR00973 86 EALKDRPAEKFRIH 99 (514)
T ss_pred HHHCCCCCCCCCCE
T ss_conf 97117701146540
No 152
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=57.72 E-value=10 Score=19.52 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC------------CCCC--HHHHHHHHHHHHHHH
Q ss_conf 9988882357999999997077518985054453------------4532--589999999999853
Q gi|254780676|r 109 KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDD------------LDDG--GAQHFAEVISAIRES 161 (329)
Q Consensus 109 ~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD------------L~Dg--GA~hfa~~I~~Ir~~ 161 (329)
+|..-| |...|..++..|.||+|+|+--.|- ..+. +-....+-.+++|+.
T Consensus 77 ~p~~Fd---a~~Wa~lak~AGaKY~V~TaKHHDGF~lwdS~~s~~n~~~~gpkrDiv~el~~A~rk~ 140 (384)
T smart00812 77 TAEKFD---PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKR 140 (384)
T ss_pred CCCCCC---HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 973289---9999999998499547752130477414678899986656788766799999999876
No 153
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=57.70 E-value=17 Score=17.98 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=83.3
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHHHHHCCCHHHHH-
Q ss_conf 99999999707751898505445345325899999999998533586899815462344---68999874107023320-
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK---PHALEKVVSAKPDVFNH- 194 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~---~~al~~v~~A~pdV~nH- 194 (329)
+| |++.-+-|...+|| |..+|-+....+.|+.||+..|++.| .. || .++.+.|++||.|.+-=
T Consensus 226 eR-a~~Lv~aGvDvivI------DtAhGhs~~vi~~ik~ik~~~p~~~i--Ia----GNVaT~e~a~~Li~aGAD~vKVG 292 (467)
T pfam00478 226 ER-AEALVEAGVDVIVI------DSAHGHSEYVLEMIKWIKKKYPDLDV--IA----GNVVTAEAARELIDAGADAVKVG 292 (467)
T ss_pred HH-HHHHHHCCCCEEEE------ECCCCCCHHHHHHHHHHHHCCCCCCE--EE----EEECCHHHHHHHHHHCCCEEEEC
T ss_conf 99-99998769988997------34454418899999998740787737--85----10058999999997077757755
Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCC
Q ss_conf ----1383000275638970358999999999970891670140488764206889999999996699399750222786
Q gi|254780676|r 195 ----NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPT 270 (329)
Q Consensus 195 ----NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps 270 (329)
-|=|-+-....=+||.+= -+++-+.+++.+-.++.--|| - +.-+|..++ .+|-|.+-||-+|.=+
T Consensus 293 iGpGSiCTTR~v~GvG~PQ~tA--v~~~a~~a~~~~vpiIADGGi-~----~sGDi~KAl----aaGAd~VMlGsllAGt 361 (467)
T pfam00478 293 IGPGSICTTREVAGVGRPQLTA--VYEVADAARKLGVPVIADGGI-R----YSGDIAKAL----AAGASAVMLGSLLAGT 361 (467)
T ss_pred CCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHCCCEEEECCCC-C----CHHHHHHHH----HCCCCEEEECHHHCCC
T ss_conf 6688656564203667750879--999999986569879944762-3----304899998----7289889877222577
Q ss_pred CC
Q ss_conf 10
Q gi|254780676|r 271 RK 272 (329)
Q Consensus 271 ~~ 272 (329)
..
T Consensus 362 ~E 363 (467)
T pfam00478 362 EE 363 (467)
T ss_pred CC
T ss_conf 77
No 154
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=57.64 E-value=17 Score=17.97 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 88235799999999707751898505445345-32589999999999
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLD-DGGAQHFAEVISAI 158 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~-DgGA~hfa~~I~~I 158 (329)
.+..|-.+.|+.++.+|...+.++..----.. |+=..||....+++
T Consensus 80 ~~t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~~l~~~f~~ia~~~ 126 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 67999999999898759998996177688999999999999998635
No 155
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=57.05 E-value=18 Score=17.90 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=54.0
Q ss_pred HHHHHHHCCC-EEEECCCEEEEEEECHHHH-----------HHHHHHHHHCCC---------CEEECCHHCCCCCCCCCC
Q ss_conf 9999997089-1670140488764206889-----------999999996699---------399750222786100780
Q gi|254780676|r 218 LLQRVKELDP-LIFTKSGIMLGLGETRNEI-----------LQLMDDLRTADV---------DFLTMGQYLQPTRKHHKV 276 (329)
Q Consensus 218 vL~~aK~~~~-~i~TKSGlMvGLGEt~eEi-----------~e~l~DLr~~gv---------dilTiGQYL~Ps~~h~pV 276 (329)
+|+..|..+. .+.++....+-+.+.-.++ -++-.++...|- |+=.-|.-..|...| |+
T Consensus 169 ~l~~LkKRkLI~~~~~k~~~v~lt~~G~k~~~~~~~~~~~it~LT~EmL~SGsWK~~~FK~Yn~~a~~~~~~~g~~H-p~ 247 (501)
T PRK04172 169 VIEELKKRKLVKEKEKTDRTVELTDAGLELLKEGIEIKEEITQLTPELLKSGEWKEKEFRPYNIKAPPPKIYPGKKH-PY 247 (501)
T ss_pred HHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHCCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HH
T ss_conf 99987547864889999999998730665442022011213007898854885233776605567888778988748-89
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 00238469999999999749624340483001031899999
Q gi|254780676|r 277 ESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFL 317 (329)
Q Consensus 277 ~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~ 317 (329)
.+ --++++++=.+|||.-+ .||+|-|||.--++..
T Consensus 248 ~~-----~~~~~r~i~~~mGF~e~-~g~~ve~~fwNfdaLf 282 (501)
T PRK04172 248 RE-----FIEEVRDILVEMGFEEV-KGPIVETEFWNFDALF 282 (501)
T ss_pred HH-----HHHHHHHHHHHCCCEEE-ECCCEECCCCCHHHHC
T ss_conf 99-----99999999997897685-3661010000334305
No 156
>KOG0638 consensus
Probab=55.70 E-value=4.7 Score=22.02 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=47.9
Q ss_pred EEEECHHHHHHHHHHHHHCCCCEEEC-CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC------CEEECCCCC
Q ss_conf 76420688999999999669939975-0222786100780002384699999999997496------243404830
Q gi|254780676|r 238 GLGETRNEILQLMDDLRTADVDFLTM-GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGF------LMVSASPLT 306 (329)
Q Consensus 238 GLGEt~eEi~e~l~DLr~~gvdilTi-GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf------~~V~SgPlV 306 (329)
-++=.-++|+++++.||+.|+++|+| ++|.|--++.+.-..-..-++-+.+++.+.-+.| ..+.+-||-
T Consensus 265 HiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTKplq 340 (381)
T KOG0638 265 HIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTKPLQ 340 (381)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCEEEEEECCCCC
T ss_conf 6641556799999999864784006987888769988653131320358899870957853788577555436667
No 157
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.45 E-value=19 Score=17.73 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=103.0
Q ss_pred CCHHHCCCCCCC----HHHHHHHHHHHHCCCCEEECCCCCC--CHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 882450017998----6689999999974982365257887--8767508972699986652235352234467899888
Q gi|254780676|r 40 KPDWIRVRAPVS----SGYKETYNILRSRNLTTVCEEAGCP--NIGECWNKNHATFMILGAICTRACTFCNVATGKPQPL 113 (329)
Q Consensus 40 kP~Wlk~~~p~~----~~~~~~~~~l~~~~L~TVCeeA~CP--Ni~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~ 113 (329)
+-.|+.+++=.+ -.-.++...+.+++.-++=- -.|+ +..+.+... -.....++.+..| +
T Consensus 41 ~~~~~gIPIIaAnMDTV~~~~MA~~L~k~Ggl~vLH-R~~~~ee~~~~~~~~----------~~~~~~~v~vsiG----i 105 (347)
T PRK05096 41 GQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVH-KHYSVEEWAAFINNS----------SADVLKHVMVSTG----T 105 (347)
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHC----------CCCCCCEEEEEEE----C
T ss_conf 774468857967888728589999999879858984-379899999998521----------4344673899991----7
Q ss_pred CHHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 8235799999999-707751898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r 114 DPQEPENISWAVR-SMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 114 D~~EP~rvA~av~-~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329)
.+++-+|+..-++ ..+.++++| |...|-..++.+.|+.||+..|+.. ++-.=-...++.+.++++|.|++
T Consensus 106 ~~~d~~r~~~i~~~~~~~~~i~i------DvA~G~~~~~~~~i~~ik~~~~~~~---iiaGNvaT~e~~~~L~~~GaD~v 176 (347)
T PRK05096 106 SDADFEKTKQILALSPALNFICI------DVANGYSEHFVQFVAKAREAWPDKT---ICAGNVVTGEMVEELILSGADIV 176 (347)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEE------ECCCCCCHHHHHHHHHHHHHCCCCE---EECCCHHHHHHHHHHHHCCCCEE
T ss_conf 87899999999952899898999------7798620889999999998789980---88143123999999997378899
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf 20138300027563897035899999999997---089167014048876420688999999999669939975022278
Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKE---LDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329)
Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~---~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329)
-=-|------+-++..+..|-+==.++.-++. .+-.++.- | |+. +.-+|..++ .+|-|.+-+|-+|.-
T Consensus 177 kVGIG~Gs~CtTR~~tGvG~Pq~sai~~c~~~~~~~~~~iiaD-G---Gi~-~~gDi~KAl----a~GAd~VM~G~~lAg 247 (347)
T PRK05096 177 KVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSD-G---GCT-VPGDVAKAF----GGGADFVMLGGMLAG 247 (347)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEC-C---CCC-CHHHHHHHH----HCCCCEEEECCCCCC
T ss_conf 9767787543045223567303789999999860579948956-8---847-504799998----738988986731037
Q ss_pred CC
Q ss_conf 61
Q gi|254780676|r 270 TR 271 (329)
Q Consensus 270 s~ 271 (329)
+.
T Consensus 248 ~~ 249 (347)
T PRK05096 248 HE 249 (347)
T ss_pred CC
T ss_conf 77
No 158
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=55.28 E-value=19 Score=17.71 Aligned_cols=118 Identities=16% Similarity=0.234 Sum_probs=74.7
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHCC-CH------------HHH
Q ss_conf 077518985054453453258999999999985335868998-1546234468999874107-02------------332
Q gi|254780676|r 128 MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRKPHALEKVVSAK-PD------------VFN 193 (329)
Q Consensus 128 l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~~A~-pd------------V~n 193 (329)
...+|+++ -+|--.+.-+.++.++..+-.+-|-+ |+-....++.+++-+.... || ...
T Consensus 22 s~~~~vfl--------L~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk 93 (181)
T COG1954 22 SESQYVFL--------LTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNVIKKAKK 93 (181)
T ss_pred CCCEEEEE--------EECHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 78719999--------8240630999999999479679998578446678538999999850677168734889999997
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE---------------ECC---CEEEEEEECHHHHHHHHHHHHH
Q ss_conf 0138300027563897035899999999997089167---------------014---0488764206889999999996
Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIF---------------TKS---GIMLGLGETRNEILQLMDDLRT 255 (329)
Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~---------------TKS---GlMvGLGEt~eEi~e~l~DLr~ 255 (329)
||+-++-|+| +-+...|+++++.+... .|+.. -++ =+-=||=||.||+.+++.
T Consensus 94 ~~~~aIqR~F--ilDS~Al~~~~~~i~~~---~pD~iEvLPGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~---- 164 (181)
T COG1954 94 LGILAIQRLF--ILDSIALEKGIKQIEKS---EPDFIEVLPGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALK---- 164 (181)
T ss_pred CCCCEEEEEE--EECHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHH----
T ss_conf 4973264220--01078899899999870---99879886754399999998755897773243053999999997----
Q ss_pred CCCCEEE
Q ss_conf 6993997
Q gi|254780676|r 256 ADVDFLT 262 (329)
Q Consensus 256 ~gvdilT 262 (329)
+|.-.+|
T Consensus 165 aGA~avS 171 (181)
T COG1954 165 AGAVAVS 171 (181)
T ss_pred HCCEEEE
T ss_conf 1767985
No 159
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.08 E-value=5.6 Score=21.47 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 535223446789988882357999999997077518985054453453258999999999985335868998154
Q gi|254780676|r 98 RACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTP 172 (329)
Q Consensus 98 R~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiP 172 (329)
-+|+|| .+|.+++.+|+|.|.+... .+ ++. + -++..+..+..+|=+|+-
T Consensus 8 e~cPfC---------------~kVR~~L~~L~L~~~~~~~-~~-----~~~-~----r~~l~~~gG~~qVP~L~D 56 (77)
T cd03041 8 EGSPFC---------------RLVREVLTELELDVILYPC-PK-----GSP-K----RDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred CCCCCH---------------HHHHHHHHHCCCCEEEEEC-CC-----CCH-H----HHHHHHHCCCCCCCEEEE
T ss_conf 999524---------------9999999986997799989-99-----966-6----899998489967737996
No 160
>PRK00957 methionine synthase; Provisional
Probab=54.61 E-value=15 Score=18.44 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999985335868-998154623446899987410702332013830002756389703589999999
Q gi|254780676|r 150 HFAEVISAIRESAPSTT-IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQ 220 (329)
Q Consensus 150 hfa~~I~~Ir~~~P~~~-IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~ 220 (329)
-+.+-|+++.+. |+. |.+==|.|.-..+.++...+ ..++++..++..-+ =.|| .+|+.-+..|.
T Consensus 147 al~~Ei~~l~~a--G~~~IQiDEP~l~~~~~~~~~~~~-~i~~~~~~~~~~~~--~HiC--g~y~~i~~~l~ 211 (307)
T PRK00957 147 ALAKEALALQKA--GAAMIQIDEPILSTGAYDLEVAKK-AIDIIAKGLNIPVA--MHVC--GDVGNIFDDLL 211 (307)
T ss_pred HHHHHHHHHHHC--CCCEEEECCHHHHCCCCHHHHHHH-HHHHHHCCCCCEEE--EEEC--CCHHHHHHHHH
T ss_conf 999999999974--998899675577638013899999-99997414674599--9966--77377788998
No 161
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=54.60 E-value=19 Score=17.63 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=95.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCH-HHHHCC
Q ss_conf 999999970775189850544534532--58999999999985335868998154623446899987410702-332013
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDG--GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPD-VFNHNL 196 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~Dg--GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pd-V~nHNi 196 (329)
.++|.....|+.||+| |+..| .-......+++++...-.. =|-+|+ .+...+++++|+|.+ |+--.+
T Consensus 24 ~~~Ei~a~~G~D~v~i------D~EHg~~~~~~~~~~~~a~~~~g~~~--iVRvp~--~~~~~i~~~LD~Ga~GiivP~V 93 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLL------DGEHAPNDVLTFIPQLMALKGSASAP--VVRPPW--NEPVIIKRLLDIGFYNFLIPFV 93 (249)
T ss_pred HHHHHHHCCCCCEEEE------ECCCCCCCHHHHHHHHHHHHHCCCCC--EEECCC--CCHHHHHHHHCCCCCEEEECCC
T ss_conf 9999997189699998------10448999999999999998469984--897999--9878999997089987895174
Q ss_pred CCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHH-HCCCC
Q ss_conf 830002756----------------3897035899999999997089167014048876420688999999999-66993
Q gi|254780676|r 197 ETVASNYLM----------------VRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLR-TADVD 259 (329)
Q Consensus 197 ETV~rLy~~----------------VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr-~~gvd 259 (329)
||++..... .++.+.|.. .-.|.+..+.+++ .+=+=||.+=|.+ ++++. --|||
T Consensus 94 ~t~eea~~~v~a~kypP~G~Rg~~~~~r~~~yg~---~~~y~~~~n~~~~-----vi~qIEt~~av~n-ldeI~av~GvD 164 (249)
T TIGR03239 94 ESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGT---VPDYFATINDNIT-----VLVQIESQKGVDN-VDEIAAVDGVD 164 (249)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCE-----EEEEECCHHHHHH-HHHHHCCCCCC
T ss_conf 5599999999973449999988876632112477---0699999864427-----8999658899987-99996789988
Q ss_pred EEECCHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH
Q ss_conf 9975022-27861007800023846999999999974962434048300103189
Q gi|254780676|r 260 FLTMGQY-LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAG 313 (329)
Q Consensus 260 ilTiGQY-L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~ 313 (329)
.+-||-| |.=|..+ | -.+=+|+--+.++++....-=..+..|-++++.-.|.
T Consensus 165 ~ifiGP~DLs~slG~-~-g~~~~p~v~~ai~~v~~~~~~~gk~~Gi~~~~~~~~~ 217 (249)
T TIGR03239 165 GIFVGPSDLAAALGH-L-GNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADAR 217 (249)
T ss_pred EEEECHHHHHHHCCC-C-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf 899884899987699-9-9999979999999999999985996698279999999
No 162
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=54.46 E-value=20 Score=17.62 Aligned_cols=102 Identities=25% Similarity=0.235 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58999999999985335868998154623446899987410702332013830002756389703589999999999708
Q gi|254780676|r 147 GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELD 226 (329)
Q Consensus 147 GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~ 226 (329)
|-..|.++.+.|+++.--+.|=+-..|-.|....+.... | |++ + .|-.+|+-..-.++++..|..+
T Consensus 28 gGklf~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~--g-------i~~-~----rv~a~a~~e~K~~ii~eLkk~~ 93 (152)
T COG4087 28 GGKLFSEVSETIQELHDMVDIYIASGDRKGSLVQLAEFV--G-------IPV-E----RVFAGADPEMKAKIIRELKKRY 93 (152)
T ss_pred CCEECHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHC--C-------CCE-E----EEECCCCHHHHHHHHHHHCCCC
T ss_conf 867707557899999876137884287323799999873--9-------960-5----1103467878999999844777
Q ss_pred CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCC
Q ss_conf 91670140488764206889999999996699399750222786100
Q gi|254780676|r 227 PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKH 273 (329)
Q Consensus 227 ~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h 273 (329)
.. -+|||=|-+++ --||+++.-|.||+|==.|++.-
T Consensus 94 ~k-----~vmVGnGaND~------laLr~ADlGI~tiq~e~v~~r~l 129 (152)
T COG4087 94 EK-----VVMVGNGANDI------LALREADLGICTIQQEGVPERLL 129 (152)
T ss_pred CE-----EEEECCCCCHH------HHHHHCCCCEEEECCCCCCHHHH
T ss_conf 17-----99964775227------77653123148963688416777
No 163
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.36 E-value=20 Score=17.61 Aligned_cols=108 Identities=16% Similarity=0.267 Sum_probs=67.8
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335868998154623446899987410702332-01383000275
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNYL 204 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy~ 204 (329)
.+|||.-.|+--=+.=.. .| -+.+.|+.+|+..|+..|||-+-+| +.++..+++++|++= -|+. ++
T Consensus 155 HR~gLsd~iLiKdNHi~~--~g--~i~~~v~~~~~~~~~~kIeVEv~tl----~q~~~a~~~gaDiI~LDnms-~~---- 221 (277)
T PRK05742 155 HRIGLYDAFLIKENHIAA--CG--GIAQAVAAAHRIAPGKPVEVEVESL----DELRQALAAGADIVMLDELS-LD---- 221 (277)
T ss_pred CCCCCCCEEEEECCHHHH--CC--CHHHHHHHHHHHCCCCCEEEEECCH----HHHHHHHHCCCCEEEECCCC-HH----
T ss_conf 458876358974546555--06--7999999999848997269996779----99999874699899986999-99----
Q ss_pred CCCCCCHHHHHHHHHHHH-HHCCCE-EEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 638970358999999999-970891-6701404887642068899999999966993997502227
Q gi|254780676|r 205 MVRPGARYFHSLRLLQRV-KELDPL-IFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 205 ~VRp~a~Y~rSL~vL~~a-K~~~~~-i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
-++.+ +-.++. ..--||.+ + .+.+.+....|||++.+|-+-.
T Consensus 222 -------------~lk~av~~~~~~~~iEaSGGI-----~----~~ni~~yA~tGvD~IS~galt~ 265 (277)
T PRK05742 222 -------------DMREAVRLTAGRAKLEASGGI-----N----ETTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred -------------HHHHHHHHHCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEECCHHHC
T ss_conf -------------999999974797489998899-----9----9999999974999998880106
No 164
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=54.25 E-value=20 Score=17.60 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 99999999970891670140488764206889999999996699399750222
Q gi|254780676|r 215 SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 215 SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
-.+.++++|+. |.--+++|.|=+..|-+..+. .++|-+-+|--+
T Consensus 185 ~~~~i~~ik~~-----t~~Pv~vGFGIs~~e~v~~~~----~~aDGvIVGSai 228 (258)
T pfam00290 185 LDELVERLKKY-----TNVPVAVGFGISTPEHVKKIA----AGADGVIVGSAI 228 (258)
T ss_pred HHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHH----CCCCEEEECHHH
T ss_conf 99999999860-----699848994579999999998----159999984999
No 165
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=53.78 E-value=17 Score=18.09 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=63.4
Q ss_pred HHHHHHHHCCCH--HHHHCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHH
Q ss_conf 899987410702--33201383000275638----970358999999999970891670140488764206889999999
Q gi|254780676|r 179 HALEKVVSAKPD--VFNHNLETVASNYLMVR----PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDD 252 (329)
Q Consensus 179 ~al~~v~~A~pd--V~nHNiETV~rLy~~VR----p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~D 252 (329)
.++..+.+.|-+ .+|.|-|||--=|...- ---+.++=|++++.- +| .|+++-+|-.. .+.....
T Consensus 579 ha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E---~p-----~gVivqfGGQt--~lnla~~ 648 (1068)
T PRK12815 579 HAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAE---NI-----KGVIVQFGGQT--AINLAKP 648 (1068)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHH---CC-----CEEEEECCCCC--HHHHHHH
T ss_conf 99999996897489962784312367455773575368799999999985---89-----97999648823--6799999
Q ss_pred HHHCCCCEEECCHHCC--------------CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
Q ss_conf 9966993997502227--------------8610078000238469999999999749624340483001031
Q gi|254780676|r 253 LRTADVDFLTMGQYLQ--------------PTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYH 311 (329)
Q Consensus 253 Lr~~gvdilTiGQYL~--------------Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~ 311 (329)
|.+.|+.|| |+=.. -..-.++.-+|..-..+++-.++|.++||.. |||.||-
T Consensus 649 L~~~gv~Il--Gts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPv-----lvRPSyv 714 (1068)
T PRK12815 649 LEEAGLPIL--GTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPV-----LIRPSYV 714 (1068)
T ss_pred HHHCCCEEE--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCE-----EECCCCC
T ss_conf 997699498--27868864241399999999973899999635456679999998649977-----8424433
No 166
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=53.33 E-value=20 Score=17.50 Aligned_cols=85 Identities=13% Similarity=0.273 Sum_probs=55.5
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHH-CCCHH--------H----H
Q ss_conf 077518985054453453258999999999985335868998-15462344689998741-07023--------3----2
Q gi|254780676|r 128 MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRKPHALEKVVS-AKPDV--------F----N 193 (329)
Q Consensus 128 l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~~-A~pdV--------~----n 193 (329)
-...++++-. |--....+.++.+|+.+..+-|-+ |+..+..++.+++-+.+ -+||- + .
T Consensus 17 s~~~~vfll~--------g~I~~l~~~v~~~k~~gK~vfVHiDli~GL~~d~~av~fL~~~~~~dGIISTk~~~i~~Ak~ 88 (174)
T pfam04309 17 SEYQVVFLLT--------GHILNLKEIVKLLKQRGKTVFVHVDLVEGLSNDEEAIEFIKEVIEPDGIISTKSKVIKKAKK 88 (174)
T ss_pred CCCCEEEEEC--------CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 9998999955--------80878999999999879989998521677789889999999824899999688999999998
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01383000275638970358999999999
Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRV 222 (329)
Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~a 222 (329)
.++-|+-|+| +-+...|+++++.++..
T Consensus 89 ~gl~tIqR~F--liDS~al~~~~~~i~~~ 115 (174)
T pfam04309 89 LGLPAIQRLF--LLDSIALERSIEQIEKL 115 (174)
T ss_pred CCCEEEEEEE--EEEHHHHHHHHHHHHHC
T ss_conf 7992897764--34177899999998647
No 167
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=53.30 E-value=20 Score=17.49 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEE----ECCCCCCCHHH--HHHHHH--CC
Q ss_conf 799999999707751898505445345325899999999998533586-8998----15462344689--998741--07
Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPST-TIEV----LTPDFLRKPHA--LEKVVS--AK 188 (329)
Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~-~IEv----LiPDf~G~~~a--l~~v~~--A~ 188 (329)
-.|=+--+..||.||+|+ .||.=||-|+..+.|.+.-++-+...-.. .+.- =++-..|+.=+ -.+-.. +|
T Consensus 121 TRRHs~i~sLLGIrh~Vl-AVNKmDLvdyd~~vF~~I~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~y~~S~~MpWY~G 199 (411)
T TIGR02034 121 TRRHSYIASLLGIRHVVL-AVNKMDLVDYDEEVFENIKKDYLAFAEQLAGVRDVTFIPLSALKGDNVVYSRSESMPWYSG 199 (411)
T ss_pred HHHHHHHHHHHCCCEEEE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCC
T ss_conf 779999988604538999-9970111476578899999999999986389834799873313687402256678887578
Q ss_pred CHHHHHCCCCCCC
Q ss_conf 0233201383000
Q gi|254780676|r 189 PDVFNHNLETVAS 201 (329)
Q Consensus 189 pdV~nHNiETV~r 201 (329)
|..+.| ||||+=
T Consensus 200 PtLle~-LEtv~~ 211 (411)
T TIGR02034 200 PTLLEH-LETVEV 211 (411)
T ss_pred CCHHHH-CCCCCC
T ss_conf 806530-040000
No 168
>KOG2872 consensus
Probab=53.24 E-value=5 Score=21.79 Aligned_cols=95 Identities=23% Similarity=0.222 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHCCCHHHHHC-----CCCCCCCCCCCC------CCCHHHHHHH
Q ss_conf 9999999985335868998--15462344689998741070233201-----383000275638------9703589999
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEV--LTPDFLRKPHALEKVVSAKPDVFNHN-----LETVASNYLMVR------PGARYFHSLR 217 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEv--LiPDf~G~~~al~~v~~A~pdV~nHN-----iETV~rLy~~VR------p~a~Y~rSL~ 217 (329)
..+.+++++++.|+..++. +|-=-+|.+-+|+.+..+|-||++-. .|-++++-+.|. |+.-|. |.+
T Consensus 233 l~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~-s~e 311 (359)
T KOG2872 233 LRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYG-SKE 311 (359)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCC-CHH
T ss_conf 9999999998615404777766999768606899987348747752020267899875178347756778476508-989
Q ss_pred HH-----HHHHHCCCEEEECCCEEEEEEE-----CHHHHHHHHH
Q ss_conf 99-----9999708916701404887642-----0688999999
Q gi|254780676|r 218 LL-----QRVKELDPLIFTKSGIMLGLGE-----TRNEILQLMD 251 (329)
Q Consensus 218 vL-----~~aK~~~~~i~TKSGlMvGLGE-----t~eEi~e~l~ 251 (329)
.| +.++.+| ||+-|+-||- |++|.++.+.
T Consensus 312 ~it~~v~~mv~~fG-----~~ryI~NLGHGi~p~tp~e~v~~f~ 350 (359)
T KOG2872 312 EITQLVKQMVKDFG-----KSRYIANLGHGITPGTPPEHVAHFV 350 (359)
T ss_pred HHHHHHHHHHHHHC-----CCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999999999838-----6663762478778997979999999
No 169
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=52.66 E-value=21 Score=17.43 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHC-CCCEEEEECCCCCCCH-HHHHHHHHCCCHHHHHCCC
Q ss_conf 999999998533-5868998154623446-8999874107023320138
Q gi|254780676|r 151 FAEVISAIRESA-PSTTIEVLTPDFLRKP-HALEKVVSAKPDVFNHNLE 197 (329)
Q Consensus 151 fa~~I~~Ir~~~-P~~~IEvLiPDf~G~~-~al~~v~~A~pdV~nHNiE 197 (329)
-.+.|++||+.. |++-|++=+-|--|.- .+.-.-++||.|++.--+.
T Consensus 186 a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~ 234 (499)
T PRK12330 186 AYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCC
T ss_conf 9999999998638998379851788746999999999849988724454
No 170
>KOG1905 consensus
Probab=52.58 E-value=12 Score=19.08 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH---C-CCEEEEECC
Q ss_conf 23579999999970---7-751898505
Q gi|254780676|r 115 PQEPENISWAVRSM---K-LSHVVITSV 138 (329)
Q Consensus 115 ~~EP~rvA~av~~l---~-Lk~vViTSV 138 (329)
.-+|-..-.|+-+| | |+|||---|
T Consensus 98 ~ArPt~THmai~~Lhr~gll~~viSQNv 125 (353)
T KOG1905 98 EARPTVTHMAIVALHRAGLLKHVISQNV 125 (353)
T ss_pred HCCCCCHHHHHHHHHHCCHHHHHHHCCC
T ss_conf 2288602799999987045452122365
No 171
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=52.36 E-value=20 Score=17.49 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999853358-68998154623446899987410702332-01383000275638970358999999999970891
Q gi|254780676|r 151 FAEVISAIRESAPS-TTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPL 228 (329)
Q Consensus 151 fa~~I~~Ir~~~P~-~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~ 228 (329)
.-+-|++.|+..|- .+|||=+. +.|.+...++||+||+= =|+.+ +.--+..+..+..+|.
T Consensus 172 ~~~Av~~aR~~~~~~~kiEVEVe----nlE~a~eA~~AGADiImLDNm~p--------------~~~~~av~~~~~~~p~ 233 (276)
T TIGR00078 172 IEKAVKRARAALPFAKKIEVEVE----NLEEAEEAAEAGADIIMLDNMKP--------------EEIKEAVELLKGRNPN 233 (276)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHCCCCEEECCCCCH--------------HHHHHHHHHHHHCCCE
T ss_conf 89999999984899807998628----98999999970995998069894--------------7999999999702990
Q ss_pred EE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf 67-014048876420688999999999669939975022
Q gi|254780676|r 229 IF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329)
Q Consensus 229 i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329)
+. =-||.|= .+.+.+..+.|||++..|--
T Consensus 234 ~~~EaSGGit---------l~n~~~ya~~gVD~IS~G~l 263 (276)
T TIGR00078 234 VLVEASGGIT---------LDNIEEYAETGVDVISSGAL 263 (276)
T ss_pred EEEEEECCCC---------HHHHHHHHHCCCCEEECCCH
T ss_conf 8999836998---------78999984089758832741
No 172
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=52.01 E-value=21 Score=17.36 Aligned_cols=149 Identities=19% Similarity=0.326 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999985335868998--154623446899987410702332013830002756389703589999999999708916
Q gi|254780676|r 152 AEVISAIRESAPSTTIEV--LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 152 a~~I~~Ir~~~P~~~IEv--LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
..+|++||+..|+..++| .+-+ -...++.++++|+|.+.=..|+.... .+++..+|+.|
T Consensus 51 ~~~v~~ir~~~~~~~lDvHLMv~~---P~~~i~~~~~~gad~I~~H~E~~~~~-------------~~~i~~ik~~g--- 111 (224)
T PTZ00170 51 PPVVSSLRKHLPNTFLDVHLMVSD---PERWVDSFAKAGASQFTFHIEATEDP-------------KAVARKIRAAG--- 111 (224)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECC---HHHHHHHHHHCCCCEEEECCCCCCCH-------------HHHHHHHHHHC---
T ss_conf 789999997179986468998638---88879999862896799850013399-------------99999999714---
Q ss_pred EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC--------CHHCCCCCC-----------C--CCCCCCCCHHHHHHH
Q ss_conf 7014048876420688999999999669939975--------022278610-----------0--780002384699999
Q gi|254780676|r 230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM--------GQYLQPTRK-----------H--HKVESFVTPQDFKSY 288 (329)
Q Consensus 230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi--------GQYL~Ps~~-----------h--~pV~ryv~P~eF~~~ 288 (329)
.|.|+-+..+-.-+.+...+++ .-+|.+.+ ||=..|..- + +.|+-=+..+....
T Consensus 112 -~k~GlAlnP~T~i~~l~~~l~~---~~iD~VLlMsV~PGf~GQ~Fi~~~l~KI~~lr~~~~~~~I~VDGGIn~~ti~~- 186 (224)
T PTZ00170 112 -MQVGVALKPKTPAEELFPLIDA---GLVDMVLVMTVEPGFGGQSFMHDMMPKVRQLRQRYPHLNIQVDGGINPDTIDL- 186 (224)
T ss_pred -CCEEEEECCCCCHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH-
T ss_conf -7645560799987999999711---44578999855699876214588999999998548997599958999899999-
Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999997496243404830010318999999999985413
Q gi|254780676|r 289 ETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQHL 327 (329)
Q Consensus 289 ~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~~ 327 (329)
..+.|-..+.+|-.+=.+=--.+...++++.-++++
T Consensus 187 ---l~~aGad~~V~GSaiF~~~d~~~~i~~lr~~i~~~~ 222 (224)
T PTZ00170 187 ---AAEAGANVIVAGTSIFKANDRKESIETLRRSVQKHL 222 (224)
T ss_pred ---HHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf ---998699999978588679999999999999999762
No 173
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=51.80 E-value=21 Score=17.33 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|.++-..++++...-|++.+=||--+ ....+.|+++++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 16 ~~~~~~a~~~~~al~~~Gi~~iEiTl~t---------~~a~~~I~~l~~~~p~~~iGaGTV---~~~e~~~~a~~aGA~F 83 (196)
T pfam01081 16 IKDKEDALPLAEALAAGGIRVLEVTLRT---------PCALDAIRLLRKNRPDALVGAGTV---LNAQQLAEAAEAGAQF 83 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC---------HHHHHHHHHHHHHCCCCEEEEEEC---CCHHHHHHHHHCCCCE
T ss_conf 7999999999999998799889994798---------279999999996499967999837---6899999999749999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC------C-
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975------0-
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM------G- 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi------G- 264 (329)
+ |-|. -+.++++++++.+.-.. -|.| |..|+.+++ +.|++++-+ |
T Consensus 84 i-------------vSP~----~~~~v~~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vKlFPA~~~Gg 135 (196)
T pfam01081 84 V-------------VSPG----LTADLLKHAVDVKIPLI--PGVS-----TPSEIMLGL----DLGLTRFKFFPAEASGG 135 (196)
T ss_pred E-------------ECCC----CHHHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCHHCCC
T ss_conf 9-------------9787----63999999997399663--7859-----999999999----87999899787310184
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf -222786100780002-----3846999999999974962434048300103189999999
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRL 319 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~ 319 (329)
.||+--+.-+|=.+| ++++-+.+|-+.+ -+..+..+-|+..++-+.+.|..+
T Consensus 136 ~~~lkal~~p~p~~~f~ptGGv~~~N~~~yl~~g---~v~~~~GS~l~~~~li~~~d~~~I 193 (196)
T pfam01081 136 VPAIKALAGPFPQVRFCPTGGIHPANVRDYLALP---NILCVGGSWLVPASLIQKGDWDRI 193 (196)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCC---CEEEEECHHHCCHHHHHCCCHHHH
T ss_conf 9999998577999869980798988899999689---869998936489889871998776
No 174
>PRK09929 hypothetical protein; Provisional
Probab=51.36 E-value=11 Score=19.31 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 46789988882357999999997077518985054453453258999
Q gi|254780676|r 105 VATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHF 151 (329)
Q Consensus 105 V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hf 151 (329)
+.+|--.|.|..| .+.+-..++|-+|.||||-+-|+--++-|..|
T Consensus 44 sts~etspmDake--eLsKkADE~Gg~yyVits~~~~~K~hatAdVY 88 (91)
T PRK09929 44 STSNEMSTADAKE--DLIKKADEKGADVLVLTSGQTDNKIHGTADIY 88 (91)
T ss_pred ECCCCCCCHHHHH--HHHHHHHHCCCCEEEEEECCCCCCEEEEEEEE
T ss_conf 4389868056899--99999997299589997257788257766633
No 175
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.00 E-value=22 Score=17.25 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=69.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 54453453258999999999985335868998154623446899987410702332013830002756389703589999
Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLR 217 (329)
Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~ 217 (329)
||=|--..|+..++ +.|++|.+.. +..|++= .=-.+.+.++.++++|.+...=|-..++. .+
T Consensus 52 VDLdgA~~g~~~n~-~~I~~i~~~~-~~~iqvG--GGIRs~e~i~~~l~~G~~rViigT~a~~~--------------~~ 113 (234)
T PRK13587 52 VDLIGAKAQHAREF-DYIKSLRRLT-TKDIEVG--GGIRTKSQIMDYFAAGINYCIVGTKGIQD--------------TD 113 (234)
T ss_pred EECCCCCCCCCCHH-HHHHHHHHHC-CCCEEEE--CCCCCHHHHHHHHHCCCCEEEECCCCCCC--------------HH
T ss_conf 97876468974379-9999998437-9867984--65475999999997689999988813028--------------69
Q ss_pred HHHHH-HHCCCEE----EECCCEEEE---EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999-9708916----701404887---642068899999999966993997502227861007800023846999999
Q gi|254780676|r 218 LLQRV-KELDPLI----FTKSGIMLG---LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYE 289 (329)
Q Consensus 218 vL~~a-K~~~~~i----~TKSGlMvG---LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~ 289 (329)
.++.+ +.++..+ -.|-|-..- .-.|.-.+.+.++.+.+.|+.-+-+.---+-... .=--|+.++
T Consensus 114 ~l~~~~~~f~~~Ivv~iD~~~~~v~~~GW~~~s~~~~~d~~~~~~~~g~~~il~TdI~rDGtl--------~G~n~el~~ 185 (234)
T PRK13587 114 WLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKM--------SGPNFELTG 185 (234)
T ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCC--------CCCCHHHHH
T ss_conf 999999866677687120238545445751425867999999997439878998402665745--------579999999
Q ss_pred HHHHHCCCCEEECCCC
Q ss_conf 9999749624340483
Q gi|254780676|r 290 TIAYSKGFLMVSASPL 305 (329)
Q Consensus 290 ~~a~~~Gf~~V~SgPl 305 (329)
+++......-++||=.
T Consensus 186 ~i~~~~~~pvIaSGGv 201 (234)
T PRK13587 186 QLVKATTIPVIASGGI 201 (234)
T ss_pred HHHHHCCCCEEEECCC
T ss_conf 9997679999998998
No 176
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=50.77 E-value=22 Score=17.22 Aligned_cols=184 Identities=14% Similarity=0.154 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCCC------HHHH--HHHHHHHHHHCC----CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2344678998888------2357--999999997077----518985054453453258999999999985335868998
Q gi|254780676|r 102 FCNVATGKPQPLD------PQEP--ENISWAVRSMKL----SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 102 FC~V~~G~P~~~D------~~EP--~rvA~av~~l~L----k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
|--+.|.+|..-| .++| ++|++.++.++- -+||=+. +.+.++.||+..|+. =.
T Consensus 142 fvL~~TSNpgs~d~Q~~~~~~~pLY~~V~~~~~~W~~~~~~~lVVGAT-------------~p~~l~~iR~~~P~~--~l 206 (478)
T PRK05500 142 FILCHTSNPGAEALQEYPTQENPFYLQVVKEAKTWGTPEQLGLEVGTT-------------NPEVLAKIRQIAPER--LI 206 (478)
T ss_pred EEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC-------------CHHHHHHHHHHCCCC--EE
T ss_conf 999826997878897184789828999999999719988679997779-------------899999999868998--78
Q ss_pred ECCCCCCCHHHHHHHHHCCCHHHHHC--CCCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCEEEECCCEEE--EEEEC
Q ss_conf 15462344689998741070233201--38300027563897---0358999999999970891670140488--76420
Q gi|254780676|r 170 LTPDFLRKPHALEKVVSAKPDVFNHN--LETVASNYLMVRPG---ARYFHSLRLLQRVKELDPLIFTKSGIML--GLGET 242 (329)
Q Consensus 170 LiPDf~G~~~al~~v~~A~pdV~nHN--iETV~rLy~~VRp~---a~Y~rSL~vL~~aK~~~~~i~TKSGlMv--GLGEt 242 (329)
|+|....+...|+.++.||.+-=.-. |.-.+.+...--|. ......++-.|.-.-... .+++-..- -+=|
T Consensus 207 LvPGiGAQGGdL~~~l~aGLn~~G~GllIpv~r~~l~~~~~~~~~~~l~~~in~~r~~~~~~~--~~~~~~~~~~~~~~- 283 (478)
T PRK05500 207 LLRSIWAEGGNLNQILTAGLNSNGDGLLIPVPQDLLGSANLKEQVKSLREEINQIRQQIVQES--SSCDLWTPDVCFLN- 283 (478)
T ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHCC-
T ss_conf 726746675599999983478899777896898885599989999999999999998751378--76321476423215-
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCC----CCCCC-CHHHHHHHHH----HHHHCCCCEEECCCC
Q ss_conf 688999999999669939975022278610078----00023-8469999999----999749624340483
Q gi|254780676|r 243 RNEILQLMDDLRTADVDFLTMGQYLQPTRKHHK----VESFV-TPQDFKSYET----IAYSKGFLMVSASPL 305 (329)
Q Consensus 243 ~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~p----V~ryv-~P~eF~~~~~----~a~~~Gf~~V~SgPl 305 (329)
..---+.+.+|.+.|| |-.|.|-.-|-+--| ....+ .|+-|....+ ....+.|..++.=|+
T Consensus 284 ~~~~~~li~~L~dig~--lkFGeFtLkSG~~SPyYiDlr~~~S~P~ll~~v~~~ya~~~~~~~fD~i~GvpY 353 (478)
T PRK05500 284 QHPHQDLILQLYDIGC--ILFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPY 353 (478)
T ss_pred CCCHHHHHHHHHHCCC--EEEECEEECCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 7846899999974585--785046876788577688614513889999999999999860899767966665
No 177
>PRK05086 malate dehydrogenase; Provisional
Probab=50.26 E-value=17 Score=18.12 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=36.3
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..||||. -+|+||-..-|..+.+.+..|.+.+|+..|=+-+
T Consensus 69 ~adiVvitAG~~rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvs 118 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999987898998589889999987899999999887208971899954
No 178
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=49.41 E-value=16 Score=18.16 Aligned_cols=95 Identities=24% Similarity=0.275 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH-CCCEEEECCCEEEEEEECHHHH--HH
Q ss_conf 62344689998741070233201383000275638970358-99999999997-0891670140488764206889--99
Q gi|254780676|r 173 DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYF-HSLRLLQRVKE-LDPLIFTKSGIMLGLGETRNEI--LQ 248 (329)
Q Consensus 173 Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~-rSL~vL~~aK~-~~~~i~TKSGlMvGLGEt~eEi--~e 248 (329)
-|-||.=| -....+=.++++- +++-..|+..++|= +.|+-+-.-.- .=..|. =-|||+|+==+.+-+ .+
T Consensus 285 TFGGNPLA-c~Aa~~vl~~i~~-----~~~l~~v~~~G~~f~~~L~~~~~~~~~l~k~VR-G~GLmlG~e~~~~~~~a~~ 357 (402)
T TIGR00707 285 TFGGNPLA-CAAALAVLEVIEK-----ERLLEKVKEKGDYFKERLEELIKKYIDLIKEVR-GKGLMLGIELEAPSVAAKD 357 (402)
T ss_pred CCCCCHHH-HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CCEEEEEEEECCCCCCHHH
T ss_conf 67873899-9998776665505-----104789999889999999986177667401532-3123465564278655899
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHH
Q ss_conf 99999966993997502227861007800023846
Q gi|254780676|r 249 LMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQ 283 (329)
Q Consensus 249 ~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~ 283 (329)
..+.|++.|.=|++=|+ .|.|+++|=
T Consensus 358 ~~~~a~~~GlLv~~Ag~---------~v~Rf~PPL 383 (402)
T TIGR00707 358 IVKEAREKGLLVNTAGP---------KVLRFVPPL 383 (402)
T ss_pred HHHHHHHCCCEEECCCC---------CEEEECCCC
T ss_conf 99999848926881788---------706615786
No 179
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.16 E-value=23 Score=17.06 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=64.2
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335-868998154623446899987410702332-0138300027
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP-STTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNY 203 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P-~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy 203 (329)
.+|||.-.|+--=+. +.-.|. +.+.|+++|+..| +..|||-+-.+ +.+...+++++|++= -|+
T Consensus 146 HR~gLsd~iLikdNH--i~~~g~--~~~av~~~r~~~~~~~kIeVEv~tl----~ea~~a~~~g~D~I~LDn~------- 210 (269)
T cd01568 146 HRLGLSDAVLIKDNH--IAAAGG--ITEAVKRARAAAPFEKKIEVEVETL----EEAEEALEAGADIIMLDNM------- 210 (269)
T ss_pred CCCCCCCEEEEEHHH--HHHHCC--HHHHHHHHHHHCCCCCEEEEEECCH----HHHHHHHHCCCCEEEECCC-------
T ss_conf 478887428980506--867389--9999999998689984399994989----9999999769999998798-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 56389703589999999999708916701404887642068899999999966993997502227
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
+.+.--+.++..+....-..-=||.| + .+.+.+..+.|||++.+|-.-.
T Consensus 211 -------~~~~~~~~v~~~~~~~~v~ieaSGgI-----~----~~ni~~ya~~GvD~Is~g~lt~ 259 (269)
T cd01568 211 -------SPEELKEAVKLLKGLPRVLLEASGGI-----T----LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred -------CHHHHHHHHHHHCCCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEEECHHHC
T ss_conf -------99999999998477998599998999-----9----9999999975999999084005
No 180
>PRK08392 hypothetical protein; Provisional
Probab=49.11 E-value=23 Score=17.05 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 79999999970775189850544534532589999999999853
Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRES 161 (329)
Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329)
++..++|.+++||++..||-=.+ -++...-..|.+-++.+++.
T Consensus 16 i~E~~~aA~~~Gl~~i~ITDH~~-~~~~~~~~~~~~~i~~~~~~ 58 (215)
T PRK08392 16 VRDNVAWAEKRGLKLLGISDHIH-YFTPSKFNRYINEIRRWGEE 58 (215)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999987994899806999-88828999999999985440
No 181
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.11 E-value=23 Score=17.05 Aligned_cols=169 Identities=16% Similarity=0.161 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHHCCCEEEE--ECCCCCC-----CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 8235799999999707751898--5054453-----45325899999999998533586899815462344689998741
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVI--TSVDRDD-----LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS 186 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vVi--TSV~RDD-----L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~ 186 (329)
+++|=..+|+.+...+..|+.| -|.+-.+ ..| .....+.++++|+...--.+==|.||+-.-.+..+.+.+
T Consensus 100 ~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~--~~~~~~i~~~vk~~~~~Pi~vKlsP~~~~i~~ia~~~~~ 177 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTD--PEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCC--HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 878999999998864898899978899867636775749--999999999998604896699718980009999999997
Q ss_pred CCCHHH---H------HCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE--ECHHHHHHHHH
Q ss_conf 070233---2------0138300027563----8970358999999999970891670140488764--20688999999
Q gi|254780676|r 187 AKPDVF---N------HNLETVASNYLMV----RPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG--ETRNEILQLMD 251 (329)
Q Consensus 187 A~pdV~---n------HNiETV~rLy~~V----Rp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG--Et~eEi~e~l~ 251 (329)
++.|-+ | -++||-....... --.+-+.++|+.++.+++.- ++. |+|.| .+.+++++.+
T Consensus 178 ~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~v~~~~~~~-~ip-----Iig~GGI~s~~da~e~i- 250 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIP-----IIGVGGIASGEDALEFL- 250 (296)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCC-----EEEECCCCCHHHHHHHH-
T ss_conf 69988999746787663644467552455787686778899999999998545-888-----79757979999999999-
Q ss_pred HHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99966993997502227861007800023846999999999974962434
Q gi|254780676|r 252 DLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 252 DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
.+|-+.+-|+-=+- + --.+-.+--+++.++-.+.||..+.
T Consensus 251 ---~aGAs~VQi~Tai~----~---Gp~~i~~i~~~L~~~l~~~G~~si~ 290 (296)
T cd04740 251 ---MAGASAVQVGTANF----V---DPEAFKEIIEGLEAYLDEEGIKSIE 290 (296)
T ss_pred ---HCCCCHHHHHHHHH----C---CHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf ---83998887236674----2---9279999999999999983999899
No 182
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.97 E-value=24 Score=17.04 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCC-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC-CCHHHHHH--
Q ss_conf 45325899999999998533586899815--462344-6899987410702332013830002756389-70358999--
Q gi|254780676|r 143 LDDGGAQHFAEVISAIRESAPSTTIEVLT--PDFLRK-PHALEKVVSAKPDVFNHNLETVASNYLMVRP-GARYFHSL-- 216 (329)
Q Consensus 143 L~DgGA~hfa~~I~~Ir~~~P~~~IEvLi--PDf~G~-~~al~~v~~A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL-- 216 (329)
+++.|+..|.+-++++++..|+.-+=+-+ .+-..+ .+..+.+.+++.|.+-=|+=+.- .+.-|. ++...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN--~~~~~~~g~~~~~~~~~ 155 (299)
T cd02940 78 ISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPH--GMPERGMGAAVGQDPEL 155 (299)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHCCCHHH
T ss_conf 2120299999999998752799737988517898789999999998718888998267889--87612345552449999
Q ss_pred --HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf --999999970891670140488764206889999999996699399750
Q gi|254780676|r 217 --RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 217 --~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
++++.+++. ++-=+++=|.=...++.+..+-+.++|+|=+++.
T Consensus 156 l~~i~~~v~~~-----~~~Pi~vKLsP~~~~i~~ia~~~~~~gadgiv~~ 200 (299)
T cd02940 156 VEEICRWVREA-----VKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred HHHHHHHHHHH-----CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999862-----4786489628871549999999998599899997
No 183
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=48.57 E-value=24 Score=16.99 Aligned_cols=197 Identities=19% Similarity=0.298 Sum_probs=115.5
Q ss_pred EEECCCCCCCCCCCCCCCC--CCC-CCCHHHHHHHHHH------HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9866522353522344678--998-8882357999999------997077518985054453453258999999999985
Q gi|254780676|r 90 MILGAICTRACTFCNVATG--KPQ-PLDPQEPENISWA------VRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRE 160 (329)
Q Consensus 90 MilG~~CTR~C~FC~V~~G--~P~-~~D~~EP~rvA~a------v~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~ 160 (329)
.+|-+.|.-.|+||--... .|. ..-|+|-.++-.- |.-|=|.--||-+ +|.--....++.+.+|-
T Consensus 58 iLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~------~DyTmE~mi~var~LRl 131 (404)
T COG4277 58 ILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN------PDYTMEEMIEVARILRL 131 (404)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCC------CCHHHHHHHHHHHHHHH
T ss_conf 998625777638875555578854305899999999989887424330002463368------61479999999998832
Q ss_pred HC-CCCEEEE-ECCCCCCCHHHHHHHHHCC--CHHHHHCCCCCC-----CCCCCCCCCCHHHHHHHHHHH---------H
Q ss_conf 33-5868998-1546234468999874107--023320138300-----027563897035899999999---------9
Q gi|254780676|r 161 SA-PSTTIEV-LTPDFLRKPHALEKVVSAK--PDVFNHNLETVA-----SNYLMVRPGARYFHSLRLLQR---------V 222 (329)
Q Consensus 161 ~~-P~~~IEv-LiPDf~G~~~al~~v~~A~--pdV~nHNiETV~-----rLy~~VRp~a~Y~rSL~vL~~---------a 222 (329)
.. -.--|-. +||. ... +.+.+|| .|..+-|||+.. .|-|.--| ++-.+|...++. .
T Consensus 132 e~~f~GYIHlK~IPg--as~---~li~eaglyadRvSiNIElp~~~~lk~lap~K~p-~dI~r~Mg~ir~~i~e~~e~~~ 205 (404)
T COG4277 132 EHKFRGYIHLKIIPG--ASP---DLIKEAGLYADRVSINIELPTDDGLKLLAPEKDP-TDILRSMGWIRLKILENAEDKR 205 (404)
T ss_pred CCCCCCEEEEEECCC--CCH---HHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCCCHH
T ss_conf 045575799875699--998---9999986534105776744886446661888883-7888898999987765155022
Q ss_pred H-----HCCCEEEECCCEEEEE-EECHHHHHHHHHHHHH-CCCCEEECCHHCC-CCCCCCCCCCCCCHHHHHHHHHHH-H
Q ss_conf 9-----7089167014048876-4206889999999996-6993997502227-861007800023846999999999-9
Q gi|254780676|r 223 K-----ELDPLIFTKSGIMLGL-GETRNEILQLMDDLRT-ADVDFLTMGQYLQ-PTRKHHKVESFVTPQDFKSYETIA-Y 293 (329)
Q Consensus 223 K-----~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~-~gvdilTiGQYL~-Ps~~h~pV~ryv~P~eF~~~~~~a-~ 293 (329)
+ ++.|.-. -+-+|||- |||+++|+..-.-|.. -+...+-..-|.. |+...+|-++--.-.|-.-|..-- +
T Consensus 206 r~r~tp~fapaGQ-STQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQADwLl 284 (404)
T COG4277 206 RKRHTPEFAPAGQ-STQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQADWLL 284 (404)
T ss_pred HHCCCCCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 2104723367787-327887158874488998888775324314898621333688988866678536777777777899
Q ss_pred -HCCCCE
Q ss_conf -749624
Q gi|254780676|r 294 -SKGFLM 299 (329)
Q Consensus 294 -~~Gf~~ 299 (329)
--||..
T Consensus 285 rfYgF~~ 291 (404)
T COG4277 285 RFYGFSA 291 (404)
T ss_pred HHHCCCH
T ss_conf 9708887
No 184
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=48.31 E-value=24 Score=16.97 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHCCCHHHHHC
Q ss_conf 999999997077518985054453453258999999999985335868998154623446-89998741070233201
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP-HALEKVVSAKPDVFNHN 195 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~-~al~~v~~A~pdV~nHN 195 (329)
..+|+....||...+.|---.- +. --.--.+.|++||+..| +-|++-+-+-.|-- .+.-+.++||.|.+---
T Consensus 159 v~~akel~~~g~DSIciKDmaG--ll--tP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 159 VELAKELLEMGVDSICIKDMAG--LL--TPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHHHHHHHCCCCEEEEECCCC--CC--CHHHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999972798788400002--69--86889999999997459-70698504555617999999998176422210
No 185
>PTZ00326 phenylalanyl-tRNA synthetase; Provisional
Probab=48.16 E-value=24 Score=16.95 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=35.5
Q ss_pred CEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 3997502227861007800023846999999999974962434048300103189999
Q gi|254780676|r 259 DFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDF 316 (329)
Q Consensus 259 dilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~ 316 (329)
|+-.-|-...+.+.| |+.+ --++++++=.+|||.-+..|++|-|||.--++.
T Consensus 228 Nv~a~g~~~~~g~~h-p~~~-----~~~~~r~if~~mGF~E~~~~~~ves~fwNfDaL 279 (505)
T PTZ00326 228 NFNASGKKVSMGNLH-PLLK-----VRQEFREIFMEMGFEEMPTNRWVESSFWNFDAL 279 (505)
T ss_pred CCCCCCCCCCCCCCC-HHHH-----HHHHHHHHHHHCCCEECCCCCEEEECCCCCHHH
T ss_conf 106988888877668-8999-----999999999977976766897133132131110
No 186
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=48.05 E-value=24 Score=16.94 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCEEEEEE-----E-CHHHHHHHHHHHHHCCC---CEEECCHH-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 40488764-----2-06889999999996699---39975022-------278610078000238469999999999749
Q gi|254780676|r 233 SGIMLGLG-----E-TRNEILQLMDDLRTADV---DFLTMGQY-------LQPTRKHHKVESFVTPQDFKSYETIAYSKG 296 (329)
Q Consensus 233 SGlMvGLG-----E-t~eEi~e~l~DLr~~gv---dilTiGQY-------L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~G 296 (329)
--++||-= + +.|-..+.+.=|++.|+ +++.|.|+ .||+--..|-.||=+|++|..+=+.|.++|
T Consensus 148 YElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~G 227 (628)
T COG0296 148 YELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAG 227 (628)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99976503588776789999987589997098779971443579888877774300156556799899999999998769
Q ss_pred CCEEE
Q ss_conf 62434
Q gi|254780676|r 297 FLMVS 301 (329)
Q Consensus 297 f~~V~ 301 (329)
+..+.
T Consensus 228 IgViL 232 (628)
T COG0296 228 IGVIL 232 (628)
T ss_pred CEEEE
T ss_conf 98999
No 187
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=48.03 E-value=22 Score=17.20 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCC--CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999853358--68998154623446899987410702332013830002756389703589999999999708
Q gi|254780676|r 149 QHFAEVISAIRESAPS--TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELD 226 (329)
Q Consensus 149 ~hfa~~I~~Ir~~~P~--~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~ 226 (329)
.-|...|.++|+.-|+ ++||+=++ +....++.+.|||+-= ...+-+|--++++.++-++
T Consensus 173 ~Dw~gai~rLkq~APE~KItvEadt~------~qa~~~l~a~PDilQL-------------dKFtpqQ~~~~~~~l~~~~ 233 (277)
T TIGR01334 173 EDWSGAITRLKQQAPEKKITVEADTL------KQALAVLRADPDILQL-------------DKFTPQQVKELLELLKLLD 233 (277)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHHC
T ss_conf 02789998877437877268740598------9999997448976632-------------3688889999999999737
Q ss_pred CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf 91670140488764206889999999996699399
Q gi|254780676|r 227 PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFL 261 (329)
Q Consensus 227 ~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdil 261 (329)
+.+ .|=+-=|=.. +.+.|-.+.|.+++
T Consensus 234 ~~~----tLa~aGGiN~----~n~a~Y~~~Gi~lf 260 (277)
T TIGR01334 234 KII----TLAVAGGINK----ENVADYLELGIDLF 260 (277)
T ss_pred CCC----CEEEECCCCH----HHHHHHHHCCCEEE
T ss_conf 676----5340078787----78999986252046
No 188
>PRK13114 consensus
Probab=48.02 E-value=24 Score=16.94 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 8823579999999970775189850544534532589999
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFA 152 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa 152 (329)
+|.+.-.++.++..+.|...+=|--.--|-+.||-.-+-|
T Consensus 24 P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A 63 (266)
T PRK13114 24 PTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAA 63 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 9989999999999976999999799988867768999999
No 189
>PRK07105 pyridoxamine kinase; Validated
Probab=47.87 E-value=24 Score=16.92 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 068899999999966993
Q gi|254780676|r 242 TRNEILQLMDDLRTADVD 259 (329)
Q Consensus 242 t~eEi~e~l~DLr~~gvd 259 (329)
+.+++.+.++.|.+.|+.
T Consensus 162 ~~~~~~~~a~~L~~~G~~ 179 (284)
T PRK07105 162 DEEEIKDYLRKLADLGPK 179 (284)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 999999999999970898
No 190
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=47.76 E-value=23 Score=17.16 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=28.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5445345325899999999998533586899815
Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
-+|+||-..-|..+.+.+.+|++.+|+..+=+-+
T Consensus 85 ~~R~dll~~Na~I~~~i~~~i~~~~p~~ivivvt 118 (142)
T pfam00056 85 MTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVS 118 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8778999974699999999999769981999945
No 191
>PRK13132 consensus
Probab=46.84 E-value=25 Score=16.81 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 999999970891670140488764206889999999996699399750222
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
+.++++|+ .|+.=+.+|.|=...|-++.+ . .+.|-+-+|-.+
T Consensus 185 ~~i~~ik~-----~t~~Pv~vGFGI~~~e~v~~~---~-~~aDGvIVGSa~ 226 (246)
T PRK13132 185 DKVKEIKS-----FTDLPVAVGFGIKNNQDVKRM---R-KYADGVIVGTSI 226 (246)
T ss_pred HHHHHHHH-----CCCCCEEEECCCCCHHHHHHH---H-HCCCEEEECHHH
T ss_conf 99999996-----289986997798999999999---8-229999970999
No 192
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator; InterPro: IPR011794 This entry represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon . This protein is a member of the MerR family of transcriptional activators and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix .; GO: 0003677 DNA binding, 0045340 mercury ion binding, 0045449 regulation of transcription, 0046689 response to mercury ion.
Probab=46.79 E-value=17 Score=18.10 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=24.8
Q ss_pred CHHHHHCCCCCCCCC------CCCCCCCHHH-------HHHHHHHHHHHCCCE
Q ss_conf 023320138300027------5638970358-------999999999970891
Q gi|254780676|r 189 PDVFNHNLETVASNY------LMVRPGARYF-------HSLRLLQRVKELDPL 228 (329)
Q Consensus 189 pdV~nHNiETV~rLy------~~VRp~a~Y~-------rSL~vL~~aK~~~~~ 228 (329)
.+-.+=|+|||+=.. -.=||.++|+ .+|..+|++++.|..
T Consensus 6 A~~~GVNvETiRyYeRkGLl~eP~k~~~GyR~Y~~~~v~R~rFIKR~QeLGFs 58 (126)
T TIGR02051 6 AKAAGVNVETIRYYERKGLLPEPDKPEGGYRRYPEETVKRVRFIKRAQELGFS 58 (126)
T ss_pred HHHCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 66668970122100100778888998877140786544364554420003797
No 193
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=46.69 E-value=25 Score=16.80 Aligned_cols=11 Identities=9% Similarity=0.130 Sum_probs=5.1
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999707
Q gi|254780676|r 119 ENISWAVRSMK 129 (329)
Q Consensus 119 ~rvA~av~~l~ 129 (329)
+.||+.+++.+
T Consensus 88 e~va~~l~~~~ 98 (263)
T COG0351 88 EVVAEKLKKYG 98 (263)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998669
No 194
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.46 E-value=22 Score=17.32 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-.-||||. -+|+||-..-|..|...+..|.+.+|+..+=+-+
T Consensus 68 daDiVVitAG~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~aiiivvt 117 (310)
T cd01337 68 GADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS 117 (310)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999987898899798989998740788999999998209984999970
No 195
>KOG3111 consensus
Probab=46.44 E-value=26 Score=16.77 Aligned_cols=80 Identities=25% Similarity=0.321 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHH----HHHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 7751898505445345325899999----9999985335868998---15462344689998741070233201383000
Q gi|254780676|r 129 KLSHVVITSVDRDDLDDGGAQHFAE----VISAIRESAPSTTIEV---LTPDFLRKPHALEKVVSAKPDVFNHNLETVAS 201 (329)
Q Consensus 129 ~Lk~vViTSV~RDDL~DgGA~hfa~----~I~~Ir~~~P~~~IEv---LiPDf~G~~~al~~v~~A~pdV~nHNiETV~r 201 (329)
.+..|.|.||. |-.|-+-|-+ -|+.+|++.|+..||| +.| +.+.+..+||.+++--
T Consensus 134 ~~D~vLvMtVe----PGFGGQkFme~mm~KV~~lR~kyp~l~ieVDGGv~p------~ti~~~a~AGAN~iVa------- 196 (224)
T KOG3111 134 HVDMVLVMTVE----PGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGP------STIDKAAEAGANMIVA------- 196 (224)
T ss_pred HCCEEEEEEEC----CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC------CHHHHHHHCCCCEEEE-------
T ss_conf 02579999854----897504578999899999998689843885488682------1377998758887986-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 2756389703589999999999708
Q gi|254780676|r 202 NYLMVRPGARYFHSLRLLQRVKELD 226 (329)
Q Consensus 202 Ly~~VRp~a~Y~rSL~vL~~aK~~~ 226 (329)
-..|-..++|..-+..|+...+.+
T Consensus 197 -Gsavf~a~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111 197 -GSAVFGAADPSDVISLLRNSVEKA 220 (224)
T ss_pred -CCEEECCCCHHHHHHHHHHHHHHH
T ss_conf -333452799899999999998665
No 196
>PRK00830 consensus
Probab=46.33 E-value=26 Score=16.76 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 88235799999999707751898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329)
.....|...|+.-...|.+...|--.+. .-.|.....+.|++|.+.+ .+-|++ -.=-.+.+.++.++++|.|..
T Consensus 31 ~y~gdP~~~ak~~~~~gadelhivDld~---a~~g~~~~~~~I~~i~~~~-~~pi~v--GGGIrs~e~~~~ll~~GadkV 104 (273)
T PRK00830 31 RYAGDPVELAKRYYEDGADELVFLDITA---SHEGRATMIDVIERTAEEV-FIPLTV--GGGIRSIEDIRQILRAGADKV 104 (273)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEEEEC---CCCCCCCHHHHHHHHHHHC-CCCEEE--ECCEEECCCHHHHHHCCCCEE
T ss_conf 5788999999999987999899995324---6468842799999999866-995896--088437732899997698639
Q ss_pred HH
Q ss_conf 20
Q gi|254780676|r 193 NH 194 (329)
Q Consensus 193 nH 194 (329)
.=
T Consensus 105 vI 106 (273)
T PRK00830 105 SV 106 (273)
T ss_pred EC
T ss_conf 83
No 197
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.96 E-value=26 Score=16.72 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=65.1
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335868998154623446899987410702332-01383000275
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNYL 204 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy~ 204 (329)
.+|+|.-.|+--=+.=.+ .-+.+.|+.+|+..|...|||-+-. .+.+...+++++|++= -|+
T Consensus 150 HR~~Lsd~iLiKdNHi~~-----~~~~~av~~~r~~~~~~~IeVEv~~----lee~~~a~~~g~d~I~LDn~-------- 212 (279)
T PRK08385 150 HRFSLSDAILIKDNHLAL-----VPLEEAIRRAKEFSVYKVVEVEVES----LEDALKAAKAGADIIMLDNM-------- 212 (279)
T ss_pred CCCCCCCCEEECCCHHHH-----CCHHHHHHHHHHHCCCCEEEEEECC----HHHHHHHHHCCCCEEEECCC--------
T ss_conf 568876327880106764-----3889999999984899618997098----99999999769999998499--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC--CEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 6389703589999999999708--9167-01404887642068899999999966993997502227
Q gi|254780676|r 205 MVRPGARYFHSLRLLQRVKELD--PLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 205 ~VRp~a~Y~rSL~vL~~aK~~~--~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
+-+.--+.++..++.+ +.+. --||.+ + .+.+.++.+.|||++.+|..-.
T Consensus 213 ------s~e~~~~~v~~l~~~~~~~~v~ieaSGGI-----~----~~ni~~ya~tGVD~IS~g~lt~ 264 (279)
T PRK08385 213 ------TPEEIREVIEALKELGLREKVKIEVSGGI-----T----PETIAEYAKLDVDVISLGALTH 264 (279)
T ss_pred ------CHHHHHHHHHHHHHHCCCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEECCHHHC
T ss_conf ------99999999999875076897899997899-----8----9999999855989998497776
No 198
>PRK13121 consensus
Probab=45.92 E-value=26 Score=16.72 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=16.3
Q ss_pred ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 0140488764206889999999996699399750222
Q gi|254780676|r 231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
|+.-+.+|.|=+..|-+..+ .+ ..|-+-+|-.+
T Consensus 204 t~~Pv~vGFGIs~~e~~~~v---~~-~ADGvIVGSai 236 (265)
T PRK13121 204 VPLPVGVGFGIRDAATARAV---AE-VADAVVIGSRL 236 (265)
T ss_pred CCCCEEEECCCCCHHHHHHH---HH-CCCEEEECHHH
T ss_conf 79985997688989999999---81-19999984899
No 199
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.78 E-value=26 Score=16.70 Aligned_cols=177 Identities=16% Similarity=0.238 Sum_probs=92.0
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCC--------------------CCC-----------CCC
Q ss_conf 8999999997498236525788787675089726999866522--------------------353-----------522
Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAIC--------------------TRA-----------CTF 102 (329)
Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~C--------------------TR~-----------C~F 102 (329)
....+.+++..++..... =.=|+-+..|+.-+-|-|+.- |.. |.-
T Consensus 45 ~~~a~~i~~~~~~~v~~~----~~dG~~v~~g~~i~~i~G~~~~il~~ER~~LN~L~~~SGIAT~T~~~v~~~~~~~~~i 120 (272)
T PRK05848 45 EKYALELLEMTGIECVWT----IKDGESFKKGDTLMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEAINSHKVKL 120 (272)
T ss_pred HHHHHHHHHHHCCEEEEE----ECCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999859889999----0889890699999999977899999999999999999999999999999718997399
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-----HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf 3446789988882357999999-----997077518985054453453258999999999985335-8689981546234
Q gi|254780676|r 103 CNVATGKPQPLDPQEPENISWA-----VRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP-STTIEVLTPDFLR 176 (329)
Q Consensus 103 C~V~~G~P~~~D~~EP~rvA~a-----v~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P-~~~IEvLiPDf~G 176 (329)
|...+-.|.. --.++-|-. ..+|||.-.|+--=+. +.-.| -+.+.|+.+|+..| ...|||-+-.
T Consensus 121 ~~TRKT~Pg~---R~l~k~AV~~GGg~~HR~gLsd~ilikdNH--i~~~g--~~~~ai~~~r~~~~~~~kIeVEv~~--- 190 (272)
T PRK05848 121 LDTRKTRPLL---RIFEKYSVRNGGASNHRLGLDDCLMLKDTH--LKHIK--DLKSFIQHARKNIPFTAKIEIECES--- 190 (272)
T ss_pred ECCCCCCCCH---HHHHHHHHHHCCCCCEECCCCCEEEECHHH--HHHHC--CHHHHHHHHHHHCCCCCEEEEECCC---
T ss_conf 7079777363---799999999668654114687607886668--87726--8999999999858998469997499---
Q ss_pred CHHHHHHHHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 46899987410702332-01383000275638970358999999999970891670-14048876420688999999999
Q gi|254780676|r 177 KPHALEKVVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT-KSGIMLGLGETRNEILQLMDDLR 254 (329)
Q Consensus 177 ~~~al~~v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T-KSGlMvGLGEt~eEi~e~l~DLr 254 (329)
.+.+...+++++|++= -|+. -+.--+.++..+...+++.+ -||.+ + .+.+.++.
T Consensus 191 -l~ea~~a~~~gaDiI~LDn~~--------------~e~~k~~v~~~~~~~~~v~ieaSGGI-----~----~~ni~~yA 246 (272)
T PRK05848 191 -LEEAKEAMNAGADIVMCDNMS--------------VEETKEIVAYRNANYPHVLLEASGNI-----S----LETINAYA 246 (272)
T ss_pred -HHHHHHHHHCCCCEEEECCCC--------------HHHHHHHHHHHHCCCCCEEEEEECCC-----C----HHHHHHHH
T ss_conf -999999984599989958999--------------99999999987464887799997999-----8----99999999
Q ss_pred HCCCCEEECCHHCC
Q ss_conf 66993997502227
Q gi|254780676|r 255 TADVDFLTMGQYLQ 268 (329)
Q Consensus 255 ~~gvdilTiGQYL~ 268 (329)
..|||++.+|-.-.
T Consensus 247 ~~GvD~Is~g~lth 260 (272)
T PRK05848 247 KSGVDAISSGSLIH 260 (272)
T ss_pred HCCCCEEECCHHHC
T ss_conf 65999998797767
No 200
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=45.72 E-value=26 Score=16.70 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 7899888823579999999970775189850544
Q gi|254780676|r 107 TGKPQPLDPQEPENISWAVRSMKLSHVVITSVDR 140 (329)
Q Consensus 107 ~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~R 140 (329)
+|.| .-+.+...+.|++..++|.+-|||||+.|
T Consensus 151 tg~~-~~~~~da~~aa~~L~~~gp~~vlVTS~~~ 183 (281)
T COG2240 151 TGKP-LNTLDDAVKAARKLGADGPKIVLVTSLSR 183 (281)
T ss_pred HCCC-CCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 4988-78889999999997514898899953453
No 201
>pfam01120 Alpha_L_fucos Alpha-L-fucosidase.
Probab=45.62 E-value=22 Score=17.27 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--------------CCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9888823579999999970775189850544534--------------53258999999999985335868998
Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDL--------------DDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--------------~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
|...| |...|++.+..|.||+|+|+--.|.. .-++-...++-..+.|+. +.++=+
T Consensus 89 p~~fd---~~~Wa~~ak~AGakY~vlTaKHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~rk~--Glk~G~ 157 (344)
T pfam01120 89 PEKFD---ADEWAKLAKAAGAKYVVLTTKHHDGFTMWDSKYSDWNSVDTGPKRDIVGELAKACRKN--GIKFGF 157 (344)
T ss_pred CCCCC---HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCEEEE
T ss_conf 50079---9999999998599658861341577525778899987767899977699999999985--986799
No 202
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.41 E-value=27 Score=16.67 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 82357999999997077518985054453453258999999999985335868998--1546234468999874107023
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV--LTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv--LiPDf~G~~~al~~v~~A~pdV 191 (329)
|...-.+-.+.+.+.|.++.=+--.|-.-.|.- ..-..+|++||...+...++| .+-+ -...++.++++|+|.
T Consensus 10 d~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNi--tfg~~~v~~ir~~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~ 84 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL--TFGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGASM 84 (220)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHCCCCCEEEEEEECC---HHHHHHHHHHCCCCE
T ss_conf 999999999999976999899817789858865--669899999996589987578998338---888899999759988
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHH
Q ss_conf 3201383000275638970358999999999970891670140488764206889999999
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDD 252 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~D 252 (329)
+.-..|+.+. -..+|+.+|+.| .|.|+-+.-+-..+.+...+.+
T Consensus 85 I~~H~Ea~~~-------------~~~~i~~Ik~~g----~k~GlalnP~T~~~~l~~~l~~ 128 (220)
T PRK08883 85 ITFHVEASEH-------------VDRTLQLIKEHG----CQAGVVLNPATPLAHLEYIMDK 128 (220)
T ss_pred EEECCCCCCC-------------HHHHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9985776549-------------999999999859----9668884799987999999974
No 203
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=45.36 E-value=21 Score=17.35 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 1404887642068899999999966993997502
Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329)
|--+++-=|.+.+++.+..+.|++.|+.|++||=
T Consensus 105 kvlvliTDG~s~d~~~~~a~~lr~~gv~i~~VGV 138 (164)
T cd01482 105 KVVILITDGKSQDDVELPARVLRNLGVNVFAVGV 138 (164)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 0799960798843389999999988938999978
No 204
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=44.95 E-value=27 Score=16.62 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=80.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH----
Q ss_conf 9999999970775189850544534532589999999999853358689981546234468999874107023320----
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH---- 194 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH---- 194 (329)
+|+.. .-+-|...+|| |..+|-+....++|+.||+..|++.|-. .=-.-.++.+.+++||.|.+-=
T Consensus 230 eR~~a-Lv~AGvDvlvI------DtAHGhS~~vi~~vk~iK~~~p~~~via---GNvaT~~~a~~Li~aGad~ikvGiG~ 299 (479)
T PRK07807 230 AKARA-LLEAGVDVLVI------DTAHGHQEKMLEAIRAVRALDPGVPLVA---GNVVTAEGTRDLVEAGADIVKVGVGP 299 (479)
T ss_pred HHHHH-HHHCCCCEEEE------ECCCCCHHHHHHHHHHHHHHCCCCCEEE---EEHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99999-99769989997------5457664899999999984089885787---43202999999997399976315557
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCC
Q ss_conf -1383000275638970358999999999970891670140488764206889999999996699399750222786100
Q gi|254780676|r 195 -NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKH 273 (329)
Q Consensus 195 -NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h 273 (329)
-|=|-+-....=+||.+=- +++-+.+++.+-.+.. -|.|---| +|..++ ++|-|.+-||-+|.=|..-
T Consensus 300 GSiCtTr~v~gvG~pq~tAi--~~~a~~a~~~gvpiIA-DGGIr~sG----di~KAl----a~GA~~VMlGsllAGt~Es 368 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAV--LECAAAARELGAHVWA-DGGVRHPR----DVALAL----AAGASNVMIGSWFAGTYES 368 (479)
T ss_pred CCCEECCCCCCCCCCHHHHH--HHHHHHHHHCCCCEEE-CCCCCCCC----HHHHHH----HCCCCEEEECCCCCCCCCC
T ss_conf 83243463237788609999--9999998756997894-58725346----799998----7289878888301577779
No 205
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=44.59 E-value=4.7 Score=21.96 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEECCCCCC----
Q ss_conf 89988--882357999999997077518985054453453258999999999985335-----8689981546234----
Q gi|254780676|r 108 GKPQP--LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP-----STTIEVLTPDFLR---- 176 (329)
Q Consensus 108 G~P~~--~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P-----~~~IEvLiPDf~G---- 176 (329)
..|.. ||..|-..-=..=-.-|.|=+-| ||.=--|++=|..+|+..- +++||.-.--+-|
T Consensus 72 ~~PlAlHLDHhe~~ddI~~kv~aGvkS~MI---------DaSHl~F~~Nv~lvk~VVdFcHr~D~sVEAELG~LgG~EDD 142 (282)
T TIGR01858 72 DMPLALHLDHHESFDDIKQKVAAGVKSVMI---------DASHLPFEQNVKLVKEVVDFCHRYDASVEAELGRLGGVEDD 142 (282)
T ss_pred CCCCEECCCCCCCHHHHHHHHHCCCCEEEE---------CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 996031033468876889997537723556---------57778888877886666644216786576660846553266
Q ss_pred -----------CHHH-HHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -----------4689-998741070233201383000275638970358999999999
Q gi|254780676|r 177 -----------KPHA-LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRV 222 (329)
Q Consensus 177 -----------~~~a-l~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~a 222 (329)
+.++ .+=|-..|.|-++==|=|-=-||+ =-|.=||+| |..+|+.
T Consensus 143 l~Vde~~AlyTdP~~A~~Fve~TGvDSLAvAIGTAHGlY~-~aP~LDF~R-L~~IR~~ 198 (282)
T TIGR01858 143 LSVDEEDALYTDPDEAKEFVEATGVDSLAVAIGTAHGLYK-EAPKLDFDR-LAKIREK 198 (282)
T ss_pred CEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCCCHHH-HHHHHHC
T ss_conf 4254010235896899999874275478898866532321-267533789-9875220
No 206
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.95 E-value=27 Score=16.58 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=36.5
Q ss_pred HCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 0775189850-------544534532589999999999853-358689981
Q gi|254780676|r 128 MKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRES-APSTTIEVL 170 (329)
Q Consensus 128 l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~-~P~~~IEvL 170 (329)
-+-.+||||. -+|+||-..-|..|.+..+.|.+. .|++.|=|-
T Consensus 77 ~~aDvvii~ag~prkpGmtR~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv 127 (325)
T cd01336 77 KDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV 127 (325)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 688789994887799998279999989999999999999861458199992
No 207
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=43.54 E-value=28 Score=16.47 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHHHHHCCCCEEEE---ECCCCC-CCHHHHH
Q ss_conf 82357999999997077518985054453453258-------999999999985335868998---154623-4468999
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-------QHFAEVISAIRESAPSTTIEV---LTPDFL-RKPHALE 182 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-------~hfa~~I~~Ir~~~P~~~IEv---LiPDf~-G~~~al~ 182 (329)
..+.-.+..+....+|++-+.|=.|.-++++|.-+ +...++|++||+..|+..|=+ |.|=-. |. +
T Consensus 52 sid~l~~~v~~~~~lGI~av~LFgvi~~~~KD~~Gs~A~n~~g~v~rair~iK~~fpdl~vi~DVcLc~YT~hGH----c 127 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGH----D 127 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC----C
T ss_conf 899999999999988997899954665553378887005865589999999999789809997502466778884----2
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCC-----------CCCCCHHHHHHHHHHHH---------------HHC-----------
Q ss_conf 87410702332013830002756-----------38970358999999999---------------970-----------
Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLM-----------VRPGARYFHSLRLLQRV---------------KEL----------- 225 (329)
Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~-----------VRp~a~Y~rSL~vL~~a---------------K~~----------- 225 (329)
-+++.+ .| -|=+|++.|-+. |-|-.--+-+...+|.+ -++
T Consensus 128 Gil~~~-~i--dND~Tl~~L~k~A~~~A~AGaDiVAPSdMMDGrV~aIR~~Ld~~gf~~~~ImSYsaKyaS~fYGPFRdA 204 (320)
T cd04823 128 GIVRDG-GI--LNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDA 204 (320)
T ss_pred EEECCC-CC--CCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHH
T ss_conf 131189-67--558999999999999996499932634310558999999999779987467124566645202337888
Q ss_pred ---CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---89167014048876420688999999999669939975---022278-----6100780002384699999999997
Q gi|254780676|r 226 ---DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 226 ---~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
.|..--|++--+--+-..|-+.++..|+.+ |.|||-+ .-||-= ..-++||.-|---.||..++.-|..
T Consensus 205 ~~S~p~~gdrktYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~YLDii~~~k~~~~~Pv~aYqVSGEYaMikaaa~~ 283 (320)
T cd04823 205 LGSAPRKGDKKTYQMDPANSREALREVALDIAE-GADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQN 283 (320)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHC
T ss_conf 515776788020337999779999999852751-9987996276218999999997769988999774999999999987
Q ss_pred C--CCCEE---------ECCCCCCCCHHHHHHHH
Q ss_conf 4--96243---------40483001031899999
Q gi|254780676|r 295 K--GFLMV---------SASPLTRSSYHAGDDFL 317 (329)
Q Consensus 295 ~--Gf~~V---------~SgPlVRSSY~A~e~~~ 317 (329)
- ..+.+ -+|-=.=-||+|.+...
T Consensus 284 G~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~~a~ 317 (320)
T cd04823 284 GWLDEDKVMLESLLAFKRAGADGILTYFAKEAAE 317 (320)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 9975786999999999865998898703999998
No 208
>PRK13119 consensus
Probab=43.36 E-value=29 Score=16.45 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=18.7
Q ss_pred ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 0140488764206889999999996699399750222
Q gi|254780676|r 231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
|+--+++|.|=+..|-+..+. ..+|-+-+|-.+
T Consensus 202 t~~Pv~vGFGIs~~e~v~~~~----~~aDGvIVGSai 234 (261)
T PRK13119 202 IDIPIGVGFGISNAESARKIG----RVADAVIVGSRI 234 (261)
T ss_pred CCCCEEEEECCCCHHHHHHHH----CCCCEEEECHHH
T ss_conf 699879983659999999987----349999982899
No 209
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=43.35 E-value=6.6 Score=20.93 Aligned_cols=263 Identities=19% Similarity=0.270 Sum_probs=153.3
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCE--------EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9882450017998668999999997498236525788787675089726--------99986652235352234467899
Q gi|254780676|r 39 QKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHA--------TFMILGAICTRACTFCNVATGKP 110 (329)
Q Consensus 39 ~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtA--------TFMilG~~CTR~C~FC~V~~G~P 110 (329)
..|.||.--+..+ .|..+++.|++..=.-|-++-+=.++ =++|-| -||--..-=. .---||-+-|-|
T Consensus 20 ~~~~~l~~y~a~g-gy~~l~kal~~m~p~~II~~Vk~SGL---RGRGGAGFpTGlKWsfm~k~~~~~-kylvcNADE~eP 94 (424)
T COG1894 20 PDPWSLDEYLARG-GYEGLRKALTEMGPDEIIEEVKESGL---RGRGGAGFPTGLKWSFMPKATSDQ-KYLVCNADEGEP 94 (424)
T ss_pred CCCCCHHHHHHCC-CHHHHHHHHHHCCHHHHHHHHHHCCC---CCCCCCCCCCCCEEEEEECCCCCC-EEEEEECCCCCC
T ss_conf 9855499998547-49999999986598999999987177---777877787775211012478896-489984898997
Q ss_pred CC-----CCHHHHHHH----HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------
Q ss_conf 88-----882357999----99999707751898505445345325899999999998533586899815462-------
Q gi|254780676|r 111 QP-----LDPQEPENI----SWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDF------- 174 (329)
Q Consensus 111 ~~-----~D~~EP~rv----A~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf------- 174 (329)
.. +=..+|..+ +-|.-.|+....-|- -|-+-+.. ..++-+.|.+-++.-- ..--+|-++|
T Consensus 95 GTfkDR~ime~dPH~LIEGm~IA~yA~gA~~~YiY--iRgEy~~a-~~~l~~AI~eA~~~Gl-LGknilGSgfdfdl~vh 170 (424)
T COG1894 95 GTFKDRLIMEGDPHLLIEGMIIAAYAVGATKGYIY--IRGEYPEA-IERLQKAIEEAYAAGL-LGKNILGSGFDFDLYVH 170 (424)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEE--EECCCHHH-HHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEEEE
T ss_conf 52213787705947888889999998445336899--73330999-9999999999998085-66555688754489995
Q ss_pred -------CCCHHHHHHHHH-------------------CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf -------344689998741-------------------070233201383000275638970358999999999970891
Q gi|254780676|r 175 -------LRKPHALEKVVS-------------------AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPL 228 (329)
Q Consensus 175 -------~G~~~al~~v~~-------------------A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~ 228 (329)
.|.+.||-.-++ ..|.++| |+||.-..-..+|.+++|-+|+. .-+..|.+
T Consensus 171 ~GAGAYICGEETALl~SLEGkrg~PR~KPPfPa~~GL~G~PT~IN-NVET~a~vP~Ii~~G~~wf~~~G---~~~s~GTK 246 (424)
T COG1894 171 HGAGAYICGEETALLESLEGKRGQPRLKPPFPATSGLYGKPTVIN-NVETLANVPAIIRRGADWFRSIG---KPNSRGTK 246 (424)
T ss_pred CCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE-CCHHHHHHHHHHHHHHHHHHHCC---CCCCCCCE
T ss_conf 277632405288988874277899999989864457668985540-21100202899986389998448---88899834
Q ss_pred EEECCC-------EEEEEEECHHHHHHHHH-HHHHC-CCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 670140-------48876420688999999-99966-9939975022278610078000238469999999999749624
Q gi|254780676|r 229 IFTKSG-------IMLGLGETRNEILQLMD-DLRTA-DVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLM 299 (329)
Q Consensus 229 i~TKSG-------lMvGLGEt~eEi~e~l~-DLr~~-gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~ 299 (329)
+..=|| +=+-||-|-.|+++-+- -.+.- .+.-+..| -||-.-+|-+-.=+|-.|+.+++.+-.||--.
T Consensus 247 lf~~sG~V~~pg~~E~pmG~tlrelie~~aGG~r~G~~lKAv~pG---G~s~~~l~~~~~d~pmDydsl~~~gs~lGtgg 323 (424)
T COG1894 247 LFSLSGHVKNPGLYEVPMGTTLRELIEDYAGGVRGGWKLKAVQPG---GPSGPCLPEELLDTPMDYDSLAKAGSMLGTGG 323 (424)
T ss_pred EEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEEEEC---CCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCE
T ss_conf 788611126886377217885999999956886788346899628---98766678888378767788986054667642
Q ss_pred E----ECCCCCCCCHHHHHHHH
Q ss_conf 3----40483001031899999
Q gi|254780676|r 300 V----SASPLTRSSYHAGDDFL 317 (329)
Q Consensus 300 V----~SgPlVRSSY~A~e~~~ 317 (329)
| .|--+|++-.+.-+.|.
T Consensus 324 iiV~d~~~~mv~~~~~~~~F~~ 345 (424)
T COG1894 324 IIVMDDSTCMVKAARRLSEFYK 345 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHC
T ss_conf 8998475009999999999853
No 210
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=43.33 E-value=29 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.494 Sum_probs=11.3
Q ss_pred EEECCCCCCCCCCCCC
Q ss_conf 9866522353522344
Q gi|254780676|r 90 MILGAICTRACTFCNV 105 (329)
Q Consensus 90 MilG~~CTR~C~FC~V 105 (329)
-|--.-|+.+|.-|.-
T Consensus 20 ~iw~qGC~~~C~GC~N 35 (154)
T PRK11121 20 TLFVSGCVHQCPGCYN 35 (154)
T ss_pred EEEECCCCCCCCCCCC
T ss_conf 9995688777979999
No 211
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=43.20 E-value=24 Score=16.93 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999999999853358689981546234
Q gi|254780676|r 150 HFAEVISAIRESAPSTTIEVLTPDFLR 176 (329)
Q Consensus 150 hfa~~I~~Ir~~~P~~~IEvLiPDf~G 176 (329)
....+...++++.+.- ==++..||..
T Consensus 162 ~L~dV~~dv~~~~~~~-diiilGDFNA 187 (276)
T smart00476 162 ALYDVYLDVRQKWGTE-DVIFMGDFNA 187 (276)
T ss_pred HHHHHHHHHHHHCCCC-CEEEECCCCC
T ss_conf 9999999998744766-6799624568
No 212
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=43.18 E-value=29 Score=16.44 Aligned_cols=43 Identities=33% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-.-||||. -+|+||-+.-|..|....++|.+.+|+..+=|.+
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99899996888899899779999865999999999999659972999945
No 213
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.13 E-value=29 Score=16.43 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 775189850-------5445345325899999999998533586899815462344689998741070233201383000
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVAS 201 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~r 201 (329)
+-..||||. -+|+||-+.-|..+.+.+.+|++.+|+..+=+.+-- -+.+..+.. +..-|.
T Consensus 67 daDvVVitaG~~rk~g~tR~dll~~Na~I~~~i~~~i~~~~p~~ivivvsNP----vDv~t~~~~-k~sg~p-------- 133 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNP----VDVLTYVAY-KLSGLP-------- 133 (308)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC----HHHHHHHHH-HHCCCC--------
T ss_conf 9999998999999989987899988899999999999841998089972795----478999999-972998--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCC
Q ss_conf 275638970358999999999-97089167014048876-4206889999999996699399750222786100780002
Q gi|254780676|r 202 NYLMVRPGARYFHSLRLLQRV-KELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESF 279 (329)
Q Consensus 202 Ly~~VRp~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ry 279 (329)
..+|--.++.-+|..+-.+. +..+-+...-.+.++|= |++. +-.+..+-+.-.+|-+|.+.....
T Consensus 134 -~~rViG~gt~LDs~R~~~~la~~l~v~~~~V~~~ViGeHGds~------vp~wS~~~v~G~pl~~~~~~~~~~------ 200 (308)
T cd05292 134 -PNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSE------VAVWSSANIGGVPLDEFCKLCGRP------ 200 (308)
T ss_pred -CHHEEECCCHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCC------EECCCCCEECCEEHHHHHHCCCCC------
T ss_conf -0226602446889999999999849980006415994578950------641420569879989976313788------
Q ss_pred CCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3846999999999974962434
Q gi|254780676|r 280 VTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 280 v~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
.++++.+++.+...+.||.-+.
T Consensus 201 ~~~~~~~~i~~~v~~~g~~Ii~ 222 (308)
T cd05292 201 FDEEVREEIFEEVRNAAYEIIE 222 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999877687771
No 214
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=43.10 E-value=29 Score=16.43 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHHHHCCCEEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH-HHCCCCC
Q ss_conf 999997077518985-05445345325899999999998533586899815462344689998741070233-2013830
Q gi|254780676|r 122 SWAVRSMKLSHVVIT-SVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF-NHNLETV 199 (329)
Q Consensus 122 A~av~~l~Lk~vViT-SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~-nHNiETV 199 (329)
-.+-+.+||.|+-+- -|+.|||++ | ++.+|..+ =...-|-+|= +.+.+.-+-+-.|..- ---++|+
T Consensus 235 N~~f~~~gl~~~Y~~~~v~~~~l~~-----f---~~~~~~~~-f~G~sVTiP~---K~~i~~~lDeld~~A~~iGAVNTi 302 (477)
T PRK09310 235 NPLFSQLSLNCPYIKLPLTPQELPE-----F---FSLIRDLP-FLGLSVTMPL---KTAVLDFLDKLDPSVKLCGSCNTL 302 (477)
T ss_pred HHHHHHCCCCCEEEEEECCHHHHHH-----H---HHHHHHCC-CCEEEECCCC---HHHHHHHHCCCCHHHHHHCCEEEE
T ss_conf 9999977999677888568889999-----9---99875379-9889988077---999998715289889973766589
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf 00275638-9703589999999999708916701404887642068899999999966993997
Q gi|254780676|r 200 ASNYLMVR-PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329)
Q Consensus 200 ~rLy~~VR-p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329)
-+--..+. ..-||. ..++..++.+..+..|+-+++|-|-+-.-+.-. |...|++|.-
T Consensus 303 v~~~gkl~G~NTD~~---G~~~~L~~~~~~~~~~~~~vlGaGGaarAi~~~---l~~~g~~i~I 360 (477)
T PRK09310 303 VFRNGKILGYNTDGE---GLFSLLKQKNISLNNQHVAIVGAGGAAKAIATT---LARQGAELLI 360 (477)
T ss_pred EEECCEEEEEECCHH---HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH---HHHCCCEEEE
T ss_conf 988998999825789---999999970999444622442475079999999---9867997999
No 215
>PRK03220 consensus
Probab=42.87 E-value=29 Score=16.40 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=62.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
..+-|.+..|.|.=.|..+. +...|...|+.-...|.++..|--.+. .-.|.....+.|+.|.+.. .+.
T Consensus 9 PaIDi~~g~~Vkg~~~~~~~-------~~gdP~~~a~~~~~~G~d~lhivDld~---a~~g~~~n~~~I~~i~~~~-~~p 77 (257)
T PRK03220 9 PCLDVDAGRVVKGVNFENLR-------DAGDPVELAAVYDAEGADELTFLDVTA---SSSGRATMLDVVRRTAEQV-FIP 77 (257)
T ss_pred EEEEEECCEEEECCCCCCCE-------ECCCHHHHHHHHHHCCCCEEEEEECCC---CCCCCHHHHHHHHHHHHCC-CCC
T ss_conf 99999999888577777867-------888999999999986999899990888---7567630799999998506-964
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCC
Q ss_conf 998154623446899987410702332013
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNL 196 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNi 196 (329)
|++ -.=-.+.+.++.++++|.|.+.=|-
T Consensus 78 i~v--GGGIrs~e~~~~ll~~GadkVvigs 105 (257)
T PRK03220 78 LTV--GGGVRTVEDVDSLLRAGADKVSVNT 105 (257)
T ss_pred EEE--ECCCCCHHHHHHHHHCCCCEEECHH
T ss_conf 898--4785879999999981975087206
No 216
>PRK13117 consensus
Probab=42.58 E-value=29 Score=16.37 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf 82357999999997077518985054453453258
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA 148 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA 148 (329)
|.+.-.+++.+...-|...+=|--.--|-+.||-.
T Consensus 29 ~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpv 63 (268)
T PRK13117 29 SPELSLKIIDTLIEAGADALELGIPFSDPLADGPT 63 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
T ss_conf 97999999999996699989978998885655799
No 217
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.42 E-value=29 Score=16.36 Aligned_cols=183 Identities=11% Similarity=0.135 Sum_probs=93.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
..+-|.+.-|.|...|=... ....|...|+.-...|.++..+--.+. .-.|.....+.|++|.+.+- +.
T Consensus 9 PaiDi~~gk~Vkg~~~~~~~-------~~gdP~~~a~~~~~~Gad~lhlvDld~---a~~~~~~n~~~I~~i~~~~~-vp 77 (252)
T PRK13597 9 PCLDVHAGRVVKGVNFVNLR-------DAGDPVEAARAYDEAGADELVFLDISA---THEERAILLDVVARVAERVF-IP 77 (252)
T ss_pred EEEEEECCEEEECCCCCCCE-------ECCCHHHHHHHHHHCCCCEEEEEECCC---CCCCCHHHHHHHHHHHHHCC-CC
T ss_conf 99998999888787777867-------888999999999986999999995646---66686637999999986269-82
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCE-EE----EC--C---CE
Q ss_conf 998154623446899987410702332013830002756389703589999999-99970891-67----01--4---04
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQ-RVKELDPL-IF----TK--S---GI 235 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~-~aK~~~~~-i~----TK--S---Gl 235 (329)
|++ -.=-.+.+.++.++++|.|.+.=|- +-+... ++++ -++.+|+. +. .| . -+
T Consensus 78 iqv--GGGIrs~e~~~~ll~~GadkViigS-------------~a~~np-~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v 141 (252)
T PRK13597 78 LTV--GGGVRSLEDARKLLLSGADKVSVNS-------------AAVRRP-ELIRELADHFGAQAVVLAIDARWRGDFPEV 141 (252)
T ss_pred EEE--ECCCCCHHHHHHHHHCCCCEEEECH-------------HHHHCC-HHHHHHHHHCCCCCEEEEEEEEECCCCCEE
T ss_conf 898--4771308999999856987798326-------------667493-789999987499652999988861897416
Q ss_pred EE--EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 88--7642068899999999966993997502227861007800023846999999999974962434048
Q gi|254780676|r 236 ML--GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 236 Mv--GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
.. |--+|.-+.++.+..+.+.|+.-+-+..--+-.... -| .|+-++++........++||=
T Consensus 142 ~~~~~~~~~~~~~~d~~~~~~~~G~geil~tdI~rDGt~~-------G~-d~~l~~~i~~~~~~pvIasGG 204 (252)
T PRK13597 142 HVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKE-------GY-DLRLTRMVAEAVGVPVIASGG 204 (252)
T ss_pred EECCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CC-CHHHHHHHHHCCCCCEEEECC
T ss_conf 7538727569769999999996489999997573768444-------76-959999998507998999789
No 218
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=42.37 E-value=20 Score=17.62 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=18.2
Q ss_pred CEEEEEECCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 26999866522--353522344678998888235799999999707751898
Q gi|254780676|r 86 HATFMILGAIC--TRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVI 135 (329)
Q Consensus 86 tATFMilG~~C--TR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vVi 135 (329)
++-||-+-+-= .+.| +.+-|....++|| +.||+.|-|+
T Consensus 27 ~gv~m~~w~~~~~~~~C---------~~~~d~~dA~~va---~~LgIp~~v~ 66 (349)
T cd01998 27 IGVFMKNWDEDDGKGGC---------CSEEDLKDARRVA---DQLGIPHYVV 66 (349)
T ss_pred EEEEEECCCCCCCCCCC---------CCHHHHHHHHHHH---HHCCCCEEEE
T ss_conf 99999967887667898---------8677899999999---9869967996
No 219
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.96 E-value=30 Score=16.31 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533-586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESA-PSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~IEvLi 171 (329)
+-..||||. -+|+||-...|..|.+....|.+.. |++.|=+.+
T Consensus 76 ~aDvViitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvs 126 (323)
T cd00704 76 DVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 998899827878899982799998748999999999985179983899957
No 220
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=41.83 E-value=30 Score=16.30 Aligned_cols=127 Identities=12% Similarity=0.134 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCC
Q ss_conf 57999999997077518985054453453258999999999985335868998154623446899987410702332013
Q gi|254780676|r 117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNL 196 (329)
Q Consensus 117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNi 196 (329)
-|.-+++++...|-.++.+-. -+|..-..++++..++..-.+.|+++..+ +.+......+.+.+.+....
T Consensus 65 i~~tva~~~~~~Gad~~tvh~-------~~g~~~~~~a~~~a~~~~~~~~v~l~~~~---~~~~~~~~~~~~~~~~~~~~ 134 (202)
T cd04726 65 AGALEAEMAFKAGADIVTVLG-------AAPLSTIKKAVKAAKKYGKEVQVDLIGVE---DPEKRAKLLKLGVDIVILHR 134 (202)
T ss_pred CHHHHHHHHHHHCCCEEEEEC-------CCCHHHHHHHHHHHHHCCCEEEEEEECCC---CHHHHHHHHHCCHHHHHHHH
T ss_conf 167999999970798899966-------68989999999988636967999983689---99999988856805889998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCC
Q ss_conf 83000275638970358999999999970-891670140488764206889999999996699399750222786
Q gi|254780676|r 197 ETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPT 270 (329)
Q Consensus 197 ETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps 270 (329)
- . .. ..+.-..+.+.++..++. +..+. =+|.+ . .++..+..+.|.|++-+|-+.--+
T Consensus 135 ~----~--d~-~~~g~~~~~~~~~~i~~~~~~~i~-VtpGI-----r----~~t~~~a~~~gad~iVVGR~It~A 192 (202)
T cd04726 135 G----I--DA-QAAGGWWPEDDLKKVKKLLGVKVA-VAGGI-----T----PDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred H----H--HH-HHCCCCCHHHHHHHHHHHCCCCEE-ECCCC-----C----HHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 7----8--77-752899708999999862399678-89998-----8----540999997599999989834579
No 221
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=41.81 E-value=30 Score=16.29 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=6.8
Q ss_pred HHHHHHHHCCCCEEECCC
Q ss_conf 999999974962434048
Q gi|254780676|r 287 SYETIAYSKGFLMVSASP 304 (329)
Q Consensus 287 ~~~~~a~~~Gf~~V~SgP 304 (329)
.|.+.|++-|..+|-+-|
T Consensus 141 ~YA~~aL~AG~aFVN~iP 158 (351)
T TIGR03450 141 FYAQCAIDAGVAFVNALP 158 (351)
T ss_pred HHHHHHHHHCCCEECCCC
T ss_conf 999988984981783354
No 222
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.74 E-value=30 Score=16.29 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 775189850-------544534532589999999999853358689981
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVL 170 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvL 170 (329)
+-..||||. -+|+||-..-|..|.+.+++|.+.+|+..|=+.
T Consensus 71 ~aDvVVitAG~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivv 119 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVV 119 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999998899999989888999998899999999998841998469966
No 223
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=41.71 E-value=30 Score=16.28 Aligned_cols=113 Identities=21% Similarity=0.248 Sum_probs=67.5
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC
Q ss_conf 9970775189850544534532589999999999853358-689981546234468999874107023320138300027
Q gi|254780676|r 125 VRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS-TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNY 203 (329)
Q Consensus 125 v~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~-~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy 203 (329)
..+|||.-.++--=+.=.+. | -+.+.++.+|+..|. ..|||-+-. .+.+..++++++|++=
T Consensus 44 ~HR~gL~d~ilikdnHi~~~-g---~~~~~i~~~~~~~~~~~~I~VEv~t----l~e~~~a~~~~~d~I~---------- 105 (169)
T pfam01729 44 NHRLGLSDAVLIKDNHIAAA-G---SITEAVRRAREVAPFAVKIEVEVEN----LEELEEALEAGADIIM---------- 105 (169)
T ss_pred CCCCCCCHHEEEHHHHHHHH-C---CHHHHHHHHHHHCCCCCEEEEEEEH----HHHHHHHHHCCCCEEE----------
T ss_conf 22168871036547788752-7---9999999999967999709999601----9989999846998999----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 563897035899999999997089167-0140488764206889999999996699399750222
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
-..-+-++=-+..+..++.++.+. --||.| + .+.+.++.+.|||++.+|..-
T Consensus 106 ---LDn~spe~l~~~v~~l~~~~~~v~iEaSGgI-----~----~~ni~~yA~tGvD~IS~galt 158 (169)
T pfam01729 106 ---LDNFSPEEVREAVEELDERAGRVLLEVSGGI-----T----LDNVLEYAKTGVDVISVGALT 158 (169)
T ss_pred ---ECCCCHHHHHHHHHHHHHHCCCEEEEECCCC-----C----HHHHHHHHHCCCCEEECCHHH
T ss_conf ---7799999999999999975896799961899-----9----999999997699999858644
No 224
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.44 E-value=30 Score=16.26 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=54.8
Q ss_pred EEEEECCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHC
Q ss_conf 9998665223535223446-78998888235799999999707751898505445345----325899999999998533
Q gi|254780676|r 88 TFMILGAICTRACTFCNVA-TGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLD----DGGAQHFAEVISAIRESA 162 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~-~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~----DgGA~hfa~~I~~Ir~~~ 162 (329)
-||.|||--|-+ +-+ .|.+..--.+--.|....+....=+.|+|..=+-|=.. +.-.+-+.+.|+++|+.+
T Consensus 2 ~~~~~gdsit~g----d~~n~G~~G~t~~~~~~r~~~~v~~~~PdiV~i~~GtND~~~~~~~~~~~~~~~~li~~ir~~~ 77 (157)
T cd01833 2 RIMPLGDSITWG----DKDHEGHSGYLIDQIAAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN 77 (157)
T ss_pred EEEEECCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 289822755457----8999997844499999988988986799899997366753348465899999999999999978
Q ss_pred CCCEEEEE
Q ss_conf 58689981
Q gi|254780676|r 163 PSTTIEVL 170 (329)
Q Consensus 163 P~~~IEvL 170 (329)
|+++|=++
T Consensus 78 P~~~iiv~ 85 (157)
T cd01833 78 PDVKIIVA 85 (157)
T ss_pred CCCEEEEE
T ss_conf 99879998
No 225
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=41.39 E-value=30 Score=16.25 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8888235799999999707751898505445345325899999999998
Q gi|254780676|r 111 QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIR 159 (329)
Q Consensus 111 ~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir 159 (329)
..++.+.-..++....+.|.-++=|||=.-..++---..+.-+.+.+++
T Consensus 40 g~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 40 GFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELR 88 (317)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCHHHHHHHHHHHH
T ss_conf 7537999999999999827871899705863741689889999999999
No 226
>PRK12313 glycogen branching enzyme; Provisional
Probab=41.31 E-value=31 Score=16.24 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=14.4
Q ss_pred HHHCCCCCCCHHHHHH----HHHHHHCCCCEEE
Q ss_conf 2450017998668999----9999974982365
Q gi|254780676|r 42 DWIRVRAPVSSGYKET----YNILRSRNLTTVC 70 (329)
Q Consensus 42 ~Wlk~~~p~~~~~~~~----~~~l~~~~L~TVC 70 (329)
.|.+..-+..-.|.++ -.-|++++.++|-
T Consensus 156 sw~~~~~~~~~ty~e~a~~l~~yl~~lG~t~ve 188 (632)
T PRK12313 156 SWKRNEDGRPLSYRELADELIPYVKEMGYTHVE 188 (632)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 202278888667999999999999981987799
No 227
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=41.16 E-value=21 Score=17.41 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 79986689999999974982365257887876750897269998665223--5352234467899888823579999999
Q gi|254780676|r 48 APVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICT--RACTFCNVATGKPQPLDPQEPENISWAV 125 (329)
Q Consensus 48 ~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CT--R~C~FC~V~~G~P~~~D~~EP~rvA~av 125 (329)
++.|-.-.-..-+|++.+-+ | ++-||-+-+--. +.| | ..-|....++||
T Consensus 11 mSGGVDSsVaA~LL~~~Gy~-V----------------~Gv~m~~w~~~~~~~~C--~-------~~~d~~dA~~va--- 61 (355)
T PRK00143 11 MSGGVDSSVAAALLKEQGYD-V----------------IGLFMKLWDDDDGSGGC--C-------AEEDIADARAVA--- 61 (355)
T ss_pred ECCCHHHHHHHHHHHHCCCC-E----------------EEEEEECCCCCCCCCCC--C-------CHHHHHHHHHHH---
T ss_conf 16789999999999977995-8----------------99999887688777899--8-------578899999999---
Q ss_pred HHHCCCEEEE
Q ss_conf 9707751898
Q gi|254780676|r 126 RSMKLSHVVI 135 (329)
Q Consensus 126 ~~l~Lk~vVi 135 (329)
..||+.|-|+
T Consensus 62 ~~LgIp~~v~ 71 (355)
T PRK00143 62 DKLGIPLYVV 71 (355)
T ss_pred HHCCCCEEEE
T ss_conf 9869857996
No 228
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=41.07 E-value=28 Score=16.51 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=26.7
Q ss_pred EEECHHHHHHHHHHHHHCCCCEEECCH--HCCCCC
Q ss_conf 642068899999999966993997502--227861
Q gi|254780676|r 239 LGETRNEILQLMDDLRTADVDFLTMGQ--YLQPTR 271 (329)
Q Consensus 239 LGEt~eEi~e~l~DLr~~gvdilTiGQ--YL~Ps~ 271 (329)
||=+..-|-..++.||+.|++|.+..+ |+=|..
T Consensus 29 LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~ 63 (79)
T COG1654 29 LGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQL 63 (79)
T ss_pred HCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCC
T ss_conf 78659999999999998097168607886365675
No 229
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=41.04 E-value=31 Score=16.21 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999997077518985054453453258999999999985335868998
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
.--+.++.+|+.++=|-+=.. |+++ ....+.|+.+++..-.+.-|+
T Consensus 89 ~y~~~~~~lGf~~iEiSdg~i-~i~~---~~~~~~I~~~~~~G~~v~~Ev 134 (245)
T pfam02679 89 EYLRECKELGFDAIEISDGSI-ELPE---EERLRLIRKAKKAGFKVLSEV 134 (245)
T ss_pred HHHHHHHHCCCCEEEECCCCC-CCCH---HHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999986998899568844-6898---999999999997899796641
No 230
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=40.82 E-value=31 Score=16.19 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 775189850-------54453453258999999999985335868998
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
+-..+|||+ -+|+||-..-+..|.+.+.+|.+.+|+..+=+
T Consensus 66 daDvvVitaG~~~k~g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lv 113 (300)
T cd01339 66 GSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIV 113 (300)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998999906778998998899999889999999999996599848998
No 231
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.81 E-value=28 Score=16.46 Aligned_cols=150 Identities=12% Similarity=0.198 Sum_probs=80.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
..+-|.+..|-|.=.|=. ...+ .-|..+|+.-...|.++.++.-.+. .-.|-....+.|++|.+.+ .+-
T Consensus 8 Paidi~~g~~Vk~~~~~~-----~~~~--gdP~~~a~~~~~~gadel~ivDld~---s~~~~~~~~~~I~~i~~~~-~~p 76 (253)
T PRK02083 8 PCLDVKDGRVVKGVNFVN-----LRDA--GDPVELAKRYDEEGADELVFLDITA---SSEGRDTMKDVVERVAEQV-FIP 76 (253)
T ss_pred EEEEEECCEEEECCCCCC-----CEEC--CCHHHHHHHHHHCCCCEEEEEECCC---CCCCCHHHHHHHHHHHHHC-CCC
T ss_conf 999999999997877645-----2688--8999999999987999899995626---6457741799999999863-987
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCE-EE----ECCC------
Q ss_conf 9981546234468999874107023320138300027563897035899999999-9970891-67----0140------
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR-VKELDPL-IF----TKSG------ 234 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~~~-i~----TKSG------ 234 (329)
|.+ -.=--+.+.++.++++|.|.+.=|- +-|... ++++. ++.+|+. +. .|-+
T Consensus 77 i~v--GGGIrs~e~~~~ll~~GadkVvigs-------------~a~~~p-~~i~~~~~~~G~q~Iv~siD~~~~~~~~~~ 140 (253)
T PRK02083 77 LTV--GGGIRSVEDARRLLRAGADKVSINS-------------AAVADP-ELITELADRFGSQCIVVAIDAKRDGEPGRW 140 (253)
T ss_pred EEE--ECCCCCHHHHHHHHHCCCCEEEECC-------------HHHHCC-CHHHHHHHHCCCEEEEEEEEEEECCCCCEE
T ss_conf 785--1762138987689877987899998-------------465385-355788974698359999998873768718
Q ss_pred -EEE--EEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf -488--76420688999999999669939975
Q gi|254780676|r 235 -IML--GLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 235 -lMv--GLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
+.. |.=.|.-++.+.++.+.+.|+.-+-+
T Consensus 141 ~v~~~~~~~~~~~~~~~~i~~~~~~g~geil~ 172 (253)
T PRK02083 141 EVFTHGGRKPTGIDAVEWAKEVQELGAGEILL 172 (253)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99980784125523999999987569878999
No 232
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=40.58 E-value=31 Score=16.17 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 23579999999970775189850544534532589999999999853358689981546234468999874107023320
Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329)
Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329)
++.|..+|++.+.-+++.+-|--.|+ +--+| .=+++|+++-..++ +.+.+ |.-
T Consensus 35 s~dP~eia~~lr~rgar~vYiADLda--I~g~g--~n~d~i~~l~~~~~-~ivD~------------------Gv~---- 87 (229)
T COG1411 35 SDDPLEIAEALRERGARFVYIADLDA--ILGGG--DNADTIRELSSLEK-VIVDV------------------GVR---- 87 (229)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEHHH--HHCCC--CCHHHHHHHHHHHH-HEEEC------------------CCC----
T ss_conf 99869999997654474688610378--86689--74899999876543-50011------------------333----
Q ss_pred CCCCCCC-CCCCCC--CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHH---HCCCCEEECCH---
Q ss_conf 1383000-275638--97035899999999997089167014048876420688999999999---66993997502---
Q gi|254780676|r 195 NLETVAS-NYLMVR--PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLR---TADVDFLTMGQ--- 265 (329)
Q Consensus 195 NiETV~r-Ly~~VR--p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr---~~gvdilTiGQ--- 265 (329)
.+||+.+ +-+.-| -+..|-.+++.++. +..--.+--|-|-++|-+ .++.+++.+||. +.|+=+|-||-
T Consensus 88 dL~s~~~~l~~~~~~vv~TEt~e~~e~~e~-~r~vvslD~k~~~Ll~~~--~ed~le~Vk~l~~~~~~~lIvLDi~aVGt 164 (229)
T COG1411 88 DLESHAHRLIPAETAVVGTETLEDTEEDEE-GRIVVSLDVKGGELLGPW--LEDFLETVKDLNYRRDPGLIVLDIGAVGT 164 (229)
T ss_pred CCCCHHHHCCCCCCEEECCCHHHHHHHHHC-CCEEEEEECCCCEECCCC--CHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 364788860777643531120335566330-666999964788423777--10489999987525788849997554334
Q ss_pred ----------HCCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ----------22786100780--002384699999999997496243404830010318999999999985
Q gi|254780676|r 266 ----------YLQPTRKHHKV--ESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRR 324 (329)
Q Consensus 266 ----------YL~Ps~~h~pV--~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~ 324 (329)
|+.+...| || --=|.+.|-- +.++.||.+. -||-.--|-+..=.+...+++
T Consensus 165 ~~G~~~E~l~~~~~~s~~-pVllGGGV~g~Edl---el~~~~Gv~g----vLvaTalh~G~vple~~~~~~ 227 (229)
T COG1411 165 KSGPDYELLTKVLELSEH-PVLLGGGVGGMEDL---ELLLGMGVSG----VLVATALHEGVVPLEVEQARR 227 (229)
T ss_pred CCCCCHHHHHHHHHHCCC-CEEECCCCCCHHHH---HHHHCCCCCE----EEEHHHHHCCCCCHHHHHCCC
T ss_conf 669999999999873137-53444875857778---9986179854----654335652767389985244
No 233
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=40.53 E-value=31 Score=16.16 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 235799999999707751898505445345325899999999998533586899-8154623446899987410702332
Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE-VLTPDFLRKPHALEKVVSAKPDVFN 193 (329)
Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE-vLiPDf~G~~~al~~v~~A~pdV~n 193 (329)
-..|.+..++..+.|-.++.+-.= -..|..++|+.||+.. ++.- +|-|+ --.++++-+++- .|.
T Consensus 70 V~~p~~~i~~fa~agad~It~H~E--------~~~~~~r~i~~Ik~~G--~kaGv~lnP~--Tp~~~i~~~l~~-vD~-- 134 (220)
T COG0036 70 VENPDRYIEAFAKAGADIITFHAE--------ATEHIHRTIQLIKELG--VKAGLVLNPA--TPLEALEPVLDD-VDL-- 134 (220)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEC--------CCCCHHHHHHHHHHCC--CEEEEEECCC--CCHHHHHHHHHH-CCE--
T ss_conf 289899999999819998999712--------7768999999999759--8577997899--977899989865-789--
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEE--EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC
Q ss_conf 01383000275638970358999999999970891670140488--7642068899999999966993997502227861
Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIML--GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR 271 (329)
Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMv--GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~ 271 (329)
=++=+..|...-|.=-..+|+=++.+|+.-.+ ++.+++ -=|=+ .++...+.++|.|++-.|-|+=-..
T Consensus 135 ---VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~---~~~~~IeVDGGI~----~~t~~~~~~AGad~~VaGSalF~~~ 204 (220)
T COG0036 135 ---VLLMSVNPGFGGQKFIPEVLEKIRELRAMIDE---RLDILIEVDGGIN----LETIKQLAAAGADVFVAGSALFGAD 204 (220)
T ss_pred ---EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEECCCC----HHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf ---99985779986631479999999999997402---4775999968969----8889999973999999977786781
No 234
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.43 E-value=31 Score=16.15 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=35.0
Q ss_pred HCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 0775189850-------5445345325899999999998533-58689981
Q gi|254780676|r 128 MKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESA-PSTTIEVL 170 (329)
Q Consensus 128 l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~IEvL 170 (329)
-+-..||||. -+|+||-..-|..|.+..++|.+.. |++.|=+.
T Consensus 77 ~~aDvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivv 127 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV 127 (322)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788789993687899898189999986899999999999757988389995
No 235
>PRK03906 mannonate dehydratase; Provisional
Probab=40.42 E-value=32 Score=16.15 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=17.5
Q ss_pred HHHCCCCCCC----HHHHHHHHHHHHCCCCEEEC
Q ss_conf 2450017998----66899999999749823652
Q gi|254780676|r 42 DWIRVRAPVS----SGYKETYNILRSRNLTTVCE 71 (329)
Q Consensus 42 ~Wlk~~~p~~----~~~~~~~~~l~~~~L~TVCe 71 (329)
+=||...|.- ++|.++-+-|.+.++.|||=
T Consensus 69 e~IK~g~~~~d~~Ienyk~sirNLa~~GI~viCY 102 (389)
T PRK03906 69 EDIKTGTPNRDQYIENYKQTLRNLAAAGIKVVCY 102 (389)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8887499878999999999999999769978965
No 236
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=40.29 E-value=29 Score=16.43 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCEEEEEECCC----CCCCCCCCCCCCCC-------CCC-CCHHHHHHHHHHHHHH
Q ss_conf 72699986652----23535223446789-------988-8823579999999970
Q gi|254780676|r 85 NHATFMILGAI----CTRACTFCNVATGK-------PQP-LDPQEPENISWAVRSM 128 (329)
Q Consensus 85 gtATFMilG~~----CTR~C~FC~V~~G~-------P~~-~D~~EP~rvA~av~~l 128 (329)
+..-+=||||- ..-.-|-|++...+ |.| ++++.-+++.++..++
T Consensus 207 RHIEVQvl~D~~GnvihlgeRdCSiQRr~QKvIEeaPap~l~~~~r~~m~~~Av~l 262 (497)
T PRK08654 207 RHIEIQVLADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKA 262 (497)
T ss_pred EEEEEEEEEECCCCEEEECCEECCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 37899999844797867146023436268636997899989889999999999998
No 237
>PRK07329 hypothetical protein; Provisional
Probab=40.20 E-value=32 Score=16.13 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=56.2
Q ss_pred CHHHHHCCCCCCCCCCCCCCC--CHHHHH-HHHHHHHHHCCC--EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 023320138300027563897--035899-999999997089--167014048876420688999999999669939975
Q gi|254780676|r 189 PDVFNHNLETVASNYLMVRPG--ARYFHS-LRLLQRVKELDP--LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 189 pdV~nHNiETV~rLy~~VRp~--a~Y~rS-L~vL~~aK~~~~--~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
-||++| +.-+-|.++. .+. ..|..- =++|+.+.+.|. .+-| ||+=-.-+|..- ...+.-.++.|-.++||
T Consensus 140 fdvlgH-lD~~~R~~~~-~~~~~~~~~~~i~~ilk~li~~g~~iEiNT-sgl~~~~~~~~~--~~~l~~y~~lgG~~iTi 214 (246)
T PRK07329 140 ADVLAH-FDYGFRLFDL-TVDELKAFEKQLKRIFKKMIDNDLAFELNT-KSMYLYGNEGLY--RYAIELYKKLGGKLFSI 214 (246)
T ss_pred CEEEEC-CCHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCCC--HHHHHHHHHHCCEEEEE
T ss_conf 118317-5788764888-864078889999999999998298999988-666678877788--89999999969908998
Q ss_pred CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 02227861007800023846999999999974962434
Q gi|254780676|r 264 GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 264 GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
| |..|-|=. =-..|++-.++..++||++++
T Consensus 215 G-----SDAH~pe~---vg~~f~~a~~lLk~~Gf~~ia 244 (246)
T PRK07329 215 G-----SDAHKLEH---YRYNFDDAQKLLKSHGIKEIA 244 (246)
T ss_pred E-----CCCCCHHH---HHHHHHHHHHHHHHCCCEEEE
T ss_conf 4-----69899899---997799999999984992687
No 238
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=40.15 E-value=32 Score=16.12 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=10.2
Q ss_pred HCCCCEEECCC-CCCCHHHHHCC
Q ss_conf 74982365257-88787675089
Q gi|254780676|r 63 SRNLTTVCEEA-GCPNIGECWNK 84 (329)
Q Consensus 63 ~~~L~TVCeeA-~CPNi~ECw~~ 84 (329)
+.+|..|..-= +=.+..+=|..
T Consensus 49 ~aGl~iITDGE~rR~~~~~~f~~ 71 (324)
T pfam01717 49 RLGVDVLVHGEPERGDMVEYFGE 71 (324)
T ss_pred HCCCCEEECCCCCCCCHHHHHHH
T ss_conf 80998534898602148886463
No 239
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=39.43 E-value=33 Score=16.05 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCC-CCCC---CCCCHHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 750897269998665223535223446-7899---888823579999999970--7751898505445345325899999
Q gi|254780676|r 80 ECWNKNHATFMILGAICTRACTFCNVA-TGKP---QPLDPQEPENISWAVRSM--KLSHVVITSVDRDDLDDGGAQHFAE 153 (329)
Q Consensus 80 ECw~~gtATFMilG~~CTR~C~FC~V~-~G~P---~~~D~~EP~rvA~av~~l--~Lk~vViTSV~RDDL~DgGA~hfa~ 153 (329)
|=+.-|..+.-+==.-|..+|.+|+-+ +-.+ .+-.+..-..|-..++.+ +-++|+||.=.= +.- .....
T Consensus 16 EG~~~Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP--~~~---~~l~~ 90 (212)
T COG0602 16 EGKNIGRPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTGGEP--LLQ---PNLLE 90 (212)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC--CCC---CCHHH
T ss_conf 8663671489997689788789989876606333689882589999999985088876699818864--662---23999
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999985335868998
Q gi|254780676|r 154 VISAIRESAPSTTIEV 169 (329)
Q Consensus 154 ~I~~Ir~~~P~~~IEv 169 (329)
.+..+++..-.+.+|.
T Consensus 91 Ll~~l~~~g~~~~lET 106 (212)
T COG0602 91 LLELLKRLGFRIALET 106 (212)
T ss_pred HHHHHHHCCCEEEEEC
T ss_conf 9999985884099837
No 240
>PRK05402 glycogen branching enzyme; Provisional
Probab=39.18 E-value=33 Score=16.02 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCCEEECCHH-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 88999999999669939975022-------2786100780002384699999999997496243
Q gi|254780676|r 244 NEILQLMDDLRTADVDFLTMGQY-------LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 244 eEi~e~l~DLr~~gvdilTiGQY-------L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329)
++++.-++++--.-|+++.|-+| .|||--..|-.||=+|++|..+=+.+.+.|+-.+
T Consensus 274 ~~Lipyvk~mGythIElMPv~EhP~d~SWGYQ~tgyfAptSRyGtPddfk~fVD~~H~~GIgVI 337 (730)
T PRK05402 274 DQLIPYVKEMGFTHVELLPVAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVI 337 (730)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999973987799644304788887666655401563246898999999999998699799
No 241
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=39.17 E-value=31 Score=16.19 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=27.3
Q ss_pred CCCEEECC-CCCCCHHHHHCCCCE-EEEEE---C-CCCCCCCCCCCCCCCCCC
Q ss_conf 98236525-788787675089726-99986---6-522353522344678998
Q gi|254780676|r 65 NLTTVCEE-AGCPNIGECWNKNHA-TFMIL---G-AICTRACTFCNVATGKPQ 111 (329)
Q Consensus 65 ~L~TVCee-A~CPNi~ECw~~gtA-TFMil---G-~~CTR~C~FC~V~~G~P~ 111 (329)
++=-.|-. -.|||-+=--..|.+ .+.++ | ..|-..|++=|+.-|+|-
T Consensus 151 k~C~~C~~re~CP~~AI~~~dg~~d~I~LlkC~GCG~Cke~CPynAI~gG~e~ 203 (237)
T TIGR02700 151 KLCEKCVDREACPREAISKKDGVVDEIRLLKCVGCGKCKEVCPYNAIKGGKEV 203 (237)
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEE
T ss_conf 24788987345771133410781011100102478875335854450178016
No 242
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.02 E-value=15 Score=18.42 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=72.2
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH--------HHHCCCCCCC
Q ss_conf 75189850544534532589999999999853358689981546234468999874107023--------3201383000
Q gi|254780676|r 130 LSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV--------FNHNLETVAS 201 (329)
Q Consensus 130 Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV--------~nHNiETV~r 201 (329)
+++--+||++ |--..|-+|+..-|++--+. +-.||++.|-|--+....++|+++.||- +||-+--...
T Consensus 25 ~~n~~~a~~n--d~~n~g~~~~~~rir~F~~~--~e~Ie~vLPAFPcKs~N~~KVl~s~PD~gE~l~L~~l~~~~qdi~~ 100 (330)
T COG3207 25 PENRQSASEN--DEINRGEQVQLPRIRAFIEA--GEPIEFVLPAFPCKSPNPGKVLDSRPDMGERLSLSFLNHLCQDIQL 100 (330)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8776651543--56667888888999999736--8851787315757899945303579972478899999999998998
Q ss_pred CCCC----------------CC--C--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 2756----------------38--9--70358999999999970891670140488764206889999999996699
Q gi|254780676|r 202 NYLM----------------VR--P--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329)
Q Consensus 202 Ly~~----------------VR--p--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329)
.|+. || . -.+|..-| -..+++.+ +|--|-++-+| .++.+.++++..+
T Consensus 101 ~Y~PG~ki~I~SDghvFsD~I~Vdddh~s~Y~d~L--r~m~~~i~---~~~i~kI~n~e-----~~d~F~~~~d~~~ 167 (330)
T COG3207 101 FYAPGAKITICSDGHVFSDLIRVDDDHISAYQDAL--RLMIEEIG---ATHIGKIFNLE-----DVDAFEAQRDNHE 167 (330)
T ss_pred HCCCCCEEEEEECCCEEHHHCCCCCHHHHHHHHHH--HHHHHHCC---CCCCCCEEECC-----HHHHHHHCCCCHH
T ss_conf 61899779997278260542213604677888999--99999728---87732143212-----1677761333100
No 243
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=38.90 E-value=33 Score=15.99 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=6.1
Q ss_pred HHCCCCEEECC
Q ss_conf 97498236525
Q gi|254780676|r 62 RSRNLTTVCEE 72 (329)
Q Consensus 62 ~~~~L~TVCee 72 (329)
.+.+|..+..-
T Consensus 47 ~~~GldiitdG 57 (321)
T cd03310 47 LEAGVEVPTYG 57 (321)
T ss_pred HHCCCCEECCC
T ss_conf 97599980379
No 244
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=38.83 E-value=33 Score=15.98 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 82357999999997077518985054453453258999999999985335868998154623446899987410702332
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN 193 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n 193 (329)
+++..+|+ .++-..|...+||- ..+|-+.++.+.|+.||+..|++.| ..-- -...+....|+++|.|.+-
T Consensus 151 ~~d~~era-~~Lv~AGvD~lvID------~AhGhs~~~~e~ik~ik~~~p~v~V--IaGN-VaT~~~a~~Li~aGAD~Vk 220 (404)
T PRK06843 151 DIDTIERV-EELVKAHVDILVID------SAHGHSTRIIELVKTIKNKYPNLDL--IAGN-IVTKEAALDLINVGADCLK 220 (404)
T ss_pred CHHHHHHH-HHHHHCCCCEEEEE------CCCCCHHHHHHHHHHHHHHCCCCCE--EECC-CCCHHHHHHHHHHCCCEEE
T ss_conf 85289999-99997699999996------8875217899999999976799616--6303-0579999999981989999
Q ss_pred HC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 01-----3830002756389703589999999999708916701404887642068899999999966993997502227
Q gi|254780676|r 194 HN-----LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 194 HN-----iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
=- +=|-+-....-+||++=- .++...++..+-.|..--||- +.-+|..++ .+|-|.+-||-.|.
T Consensus 221 VGiGpGsiCTTr~v~GvGvPq~tAi--~d~~~~a~~~~v~IIADGGI~-----~sGDi~KAl----A~GAdaVMlGs~lA 289 (404)
T PRK06843 221 VGIGPGSICTTRIVAGVGVPQITAI--CDVYEVCKNTNICIIADGGIR-----FSGDVVKAI----AAGADSVMIGNLFA 289 (404)
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHHCCCCCEEECCCCC-----CCCHHHHHH----HCCCCEEEECCHHC
T ss_conf 5654787725665458687489999--999999605799788368746-----532799999----71898888671313
Q ss_pred CCCC
Q ss_conf 8610
Q gi|254780676|r 269 PTRK 272 (329)
Q Consensus 269 Ps~~ 272 (329)
=+..
T Consensus 290 gt~E 293 (404)
T PRK06843 290 GTKE 293 (404)
T ss_pred CCCC
T ss_conf 6766
No 245
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.80 E-value=33 Score=15.98 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=14.5
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 40488764206889999999996699399750222
Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
.=+++|.|=...|-+. .+.+. +|-+-+|-.+
T Consensus 188 ~Pv~vGFGI~~~e~v~---~~~~~-aDGvIVGSa~ 218 (242)
T cd04724 188 LPIAVGFGISTPEQAA---EVAKY-ADGVIVGSAL 218 (242)
T ss_pred CCEEEECCCCCHHHHH---HHHHH-CCEEEECHHH
T ss_conf 9748743879999999---99965-9999987899
No 246
>PRK12616 pyridoxal kinase; Reviewed
Probab=38.69 E-value=33 Score=15.97 Aligned_cols=21 Identities=5% Similarity=0.249 Sum_probs=11.6
Q ss_pred ECHHHHHHHHHHHHHCCCCEE
Q ss_conf 206889999999996699399
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFL 261 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvdil 261 (329)
++.+++.+..+.|.+.|+.-+
T Consensus 155 ~~~~~~~~~a~~l~~~G~~~V 175 (270)
T PRK12616 155 KTVEQMKEAAKKIHELGAQYV 175 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCEE
T ss_conf 999999999999997079879
No 247
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.61 E-value=34 Score=15.96 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=33.8
Q ss_pred EECHHHHHHHHHHHHHCCCCEEEC--CHHCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEECCC
Q ss_conf 420688999999999669939975--02227861007800023846999999999-974962434048
Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTM--GQYLQPTRKHHKVESFVTPQDFKSYETIA-YSKGFLMVSASP 304 (329)
Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTi--GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a-~~~Gf~~V~SgP 304 (329)
|.+.+|.++.++.|.+.|+|+|.+ |-|..+...+-+ .+..+..|..+.... ...+...+.+|-
T Consensus 224 g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~--~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 289 (327)
T cd02803 224 GLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPP--PYVPEGYFLELAEKIKKAVKIPVIAVGG 289 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 99989999999999855999899777845667544678--7777522389999999976981999899
No 248
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=38.46 E-value=34 Score=15.94 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHCCCHHHHHCCCCCCCCCC--CCCCCCHHHH
Q ss_conf 54453453258999999999985335868998154623446-89998741070233201383000275--6389703589
Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP-HALEKVVSAKPDVFNHNLETVASNYL--MVRPGARYFH 214 (329)
Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~-~al~~v~~A~pdV~nHNiETV~rLy~--~VRp~a~Y~r 214 (329)
-+|+||-..-+..|.+.+.+|++.+|+..+=+.+ |. +.+..++..- .-|+ +|--.++.-+
T Consensus 84 ~~R~dLl~~N~~I~k~i~~~i~~~~p~aivivvt-----NPvDvmt~~~~k~------------sg~p~~rViG~gT~LD 146 (306)
T cd05291 84 ETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS-----NPVDVITYVVQKL------------SGLPKNRVIGTGTSLD 146 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC-----CCHHHHHHHHHHH------------CCCCHHHEECCCCHHH
T ss_conf 9878999978999999999987229971899935-----8167899999985------------0998666115454089
Q ss_pred HHHHHHHHH-HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999-7089167014048876420688999999999669939975022278610078000238469999999999
Q gi|254780676|r 215 SLRLLQRVK-ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 215 SL~vL~~aK-~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~ 293 (329)
|...-.... ..+-+...-++.++| |--+..+- ++..+-|.=..|-+|+.. ..++.++++++.+...
T Consensus 147 s~R~~~~ia~~l~v~~~~V~~~ViG--eHG~s~vp---~~S~~~V~G~~l~~~~~~--------~~~~~~~~~~i~~~v~ 213 (306)
T cd05291 147 TARLRRALAEKLNVDPRSVHAYVLG--EHGDSQFV---AWSTVTVGGKPLLDLLKE--------GKLSELDLDEIEEDVR 213 (306)
T ss_pred HHHHHHHHHHHHCCCHHHCEEEEEE--CCCCCEEE---EEEEEEECCEEHHHHHCC--------CCCCHHHHHHHHHHHH
T ss_conf 9999999999859995563346885--46894562---135304888989996124--------6899889999999999
Q ss_pred HCCCCEEE
Q ss_conf 74962434
Q gi|254780676|r 294 SKGFLMVS 301 (329)
Q Consensus 294 ~~Gf~~V~ 301 (329)
+-|+.-+.
T Consensus 214 ~~g~~ii~ 221 (306)
T cd05291 214 KAGYEIIN 221 (306)
T ss_pred HHHHHHHH
T ss_conf 76888861
No 249
>PRK06223 malate dehydrogenase; Reviewed
Probab=38.35 E-value=34 Score=15.93 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..||||+ -+|+||-..-+..|.+.+.+|.+.+|+..+=+.+
T Consensus 69 daDiVVitag~~rk~g~tR~dll~~N~~I~k~i~~~i~~~~p~~iilvvs 118 (312)
T PRK06223 69 GSDVVIITAGVPRKPGMSRDDLLGINAKIMKDVGEGIKKYAPDAIVIVIT 118 (312)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999990677899998868999987899999999998409981899936
No 250
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=38.28 E-value=29 Score=16.36 Aligned_cols=35 Identities=14% Similarity=0.457 Sum_probs=30.6
Q ss_pred ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 01404887642068899999999966993997502
Q gi|254780676|r 231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329)
.|--+.+-=|.+.++|.+....||+.||.|.+||=
T Consensus 109 pkvlIviTDG~s~D~v~~~A~~lr~~GV~ifaVGV 143 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGV 143 (224)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf 85999971798766389999999987988999963
No 251
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=38.11 E-value=34 Score=15.91 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 140488764206889999999996699399750
Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
|-=+++-=|.+.+++.+....||+.||.++.||
T Consensus 108 kvlvviTdG~s~d~~~~~a~~lr~~gV~i~aVG 140 (165)
T cd01481 108 QFLVLITGGKSQDDVERPAVALKRAGIVPFAIG 140 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 699998489885378999999998897899996
No 252
>KOG3043 consensus
Probab=38.10 E-value=18 Score=17.88 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88888988245001799866899999999749823652578878767508972699986652235352234467899888
Q gi|254780676|r 34 DTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPL 113 (329)
Q Consensus 34 ~~~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~ 113 (329)
+.+..-.|.|++..-|. ....++...++-.+.| |..-+---.|=||+.+-+-=.++++- .|=++..-+|..+
T Consensus 84 ~~~~~~~~~w~~~~~~~-~~~~~i~~v~k~lk~~--g~~kkIGv~GfCwGak~vv~~~~~~~-----~f~a~v~~hps~~ 155 (242)
T KOG3043 84 SLQKSERPEWMKGHSPP-KIWKDITAVVKWLKNH--GDSKKIGVVGFCWGAKVVVTLSAKDP-----EFDAGVSFHPSFV 155 (242)
T ss_pred CCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHC--CCCCEEEEEEEEECCEEEEEEECCCH-----HHEEEEEECCCCC
T ss_conf 88713538988447954-2106789999999972--98615657888525507888504343-----1203457447758
Q ss_pred CHHHHHHH
Q ss_conf 82357999
Q gi|254780676|r 114 DPQEPENI 121 (329)
Q Consensus 114 D~~EP~rv 121 (329)
|..++..+
T Consensus 156 d~~D~~~v 163 (242)
T KOG3043 156 DSADIANV 163 (242)
T ss_pred CHHHHHCC
T ss_conf 86677417
No 253
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=38.03 E-value=24 Score=16.99 Aligned_cols=153 Identities=11% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCCCCHHHCCC---CCC----CHHH-----HHHHHHHH---HCCCCEEECC-CCCCCHHHHHCCCC--------EEEEEE
Q ss_conf 88988245001---799----8668-----99999999---7498236525-78878767508972--------699986
Q gi|254780676|r 37 KMQKPDWIRVR---APV----SSGY-----KETYNILR---SRNLTTVCEE-AGCPNIGECWNKNH--------ATFMIL 92 (329)
Q Consensus 37 ~~~kP~Wlk~~---~p~----~~~~-----~~~~~~l~---~~~L~TVCee-A~CPNi~ECw~~gt--------ATFMil 92 (329)
...+|+||+-. ... ...+ ..++..++ +.+|.-|..- -+=.|...=|..+- .++-+.
T Consensus 10 S~pRP~~L~~a~~~~~~g~i~~~~l~~~~~~Ai~~~V~~Qe~~GldivtDGE~rR~~~~~~f~~~l~G~~~~~~~~~~~~ 89 (339)
T PRK09121 10 SLPKPSWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVDFEKRETVRIR 89 (339)
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 79898999999987355899999999999999999999999819997347873316489999976788445787158736
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCEEEEECC-------------CCCCCCCCHHHHHHHHHH
Q ss_conf 65223535223446789---98888235799999999707751898505-------------445345325899999999
Q gi|254780676|r 93 GAICTRACTFCNVATGK---PQPLDPQEPENISWAVRSMKLSHVVITSV-------------DRDDLDDGGAQHFAEVIS 156 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~---P~~~D~~EP~rvA~av~~l~Lk~vViTSV-------------~RDDL~DgGA~hfa~~I~ 156 (329)
+.. ....+ +-+|+ +.++-.+| .+-+++...-..| +.|||+ ++++|-+.=|.-+.+-|+
T Consensus 90 ~~~-~~~~P---~v~g~i~~~~~~~~~~-~~~~~~~t~~~vK-~tipgP~tl~~~~~~~~Y~d~~~~~~dla~a~~~Ei~ 163 (339)
T PRK09121 90 DRY-DASVP---TVVGAVSRQKPVFVED-AKFLRQQTTQPIK-WALPGPMTMIDTLYDDHYKSREKLAWEFAKILNQEAK 163 (339)
T ss_pred CCC-CCCCC---EEECCCCCCCCCCHHH-HHHHHHCCCCCCC-CCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 865-67798---2768876889882999-9998732046763-1356523200011211139999999999999999999
Q ss_pred HHHHHCCCC-EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 998533586-89981546234468999874107023320138300
Q gi|254780676|r 157 AIRESAPST-TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVA 200 (329)
Q Consensus 157 ~Ir~~~P~~-~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~ 200 (329)
++... |+ .|.+=-|.|.-..+ ...+-+.+++|+-+|-++
T Consensus 164 ~L~~a--G~~~IQiDeP~~~~~~d---e~~~~~v~~l~~a~~gl~ 203 (339)
T PRK09121 164 ELEAA--GVDIIQFDEPAFNVFFD---EVNDWGVAALERAIEGLK 203 (339)
T ss_pred HHHHC--CCCEEEECCHHHHHCHH---HHHHHHHHHHHHHHCCCC
T ss_conf 99987--99989846567651578---889999999999855898
No 254
>PRK13134 consensus
Probab=37.92 E-value=34 Score=15.89 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 823579999999970775189850544534532
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDG 146 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~Dg 146 (329)
|.+.-.++.++...-|...+=|--.--|-+.||
T Consensus 31 ~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADG 63 (257)
T PRK13134 31 TSERFWDELEALDAAGADIIEVGVPFSDPVADG 63 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 979999999999977999999789888876558
No 255
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=37.87 E-value=31 Score=16.16 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCCCC--CCCHHHHHHHHHHHHH-HCCC--EEEEECCCCCCCC--CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 78998--8882357999999997-0775--1898505445345--32589999999999853358689981546234468
Q gi|254780676|r 107 TGKPQ--PLDPQEPENISWAVRS-MKLS--HVVITSVDRDDLD--DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPH 179 (329)
Q Consensus 107 ~G~P~--~~D~~EP~rvA~av~~-l~Lk--~vViTSV~RDDL~--DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~ 179 (329)
.|.+. .+=-+.|.-.|+.=.. +|-+ ||| ||. -+|...=...|++|.+.. +..||| -.=-.+.+
T Consensus 17 qG~~~~~~vy~d~P~~~A~~~~~~~GA~~iHvV-------DLDGA~~g~~~N~~~i~~I~~~~-~~~vQv--GGGIRs~e 86 (241)
T TIGR00007 17 QGDYDKETVYSDDPVEAAKKWEEFQGAKRIHVV-------DLDGALEGGPVNLEVIKKIVEEL-GVPVQV--GGGIRSLE 86 (241)
T ss_pred ECCCCCEEEEECCHHHHHHHHHHCCCCCEEEEE-------ECCHHHCCCCCHHHHHHHHHHHC-CCCEEE--CCCCCCHH
T ss_conf 523365788308989999999841697159998-------45100068620078999999861-851798--17516889
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECH----------------
Q ss_conf 9998741070233201383000275638970358999999999970891670140488764206----------------
Q gi|254780676|r 180 ALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETR---------------- 243 (329)
Q Consensus 180 al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~---------------- 243 (329)
.+++++++|.+. .|=-++-++..=.+.+.++++++ ..+||||==.+
T Consensus 87 ~v~~ll~~Gv~R-------------VI~GT~A~~~~~~v~~~~~~~g~-----~~i~V~lD~~~g~~G~~~V~v~GW~E~ 148 (241)
T TIGR00007 87 DVEKLLDLGVDR-------------VIIGTAAVENPDLVKELLKEYGP-----ERIVVSLDARDGEEGVKEVAVKGWKEK 148 (241)
T ss_pred HHHHHHHCCCCE-------------EEEEEEEECCHHHHHHHHHHHCC-----CCEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 999999739857-------------99733221086999999998489-----965999863148875178887404113
Q ss_pred --HHHHHHHHHHHHCC-CC
Q ss_conf --88999999999669-93
Q gi|254780676|r 244 --NEILQLMDDLRTAD-VD 259 (329)
Q Consensus 244 --eEi~e~l~DLr~~g-vd 259 (329)
=..++..+-|.+.| ..
T Consensus 149 s~~~~~~~~~~~~~~G~~~ 167 (241)
T TIGR00007 149 SEVSLEELAKRLEELGELE 167 (241)
T ss_pred CCCCHHHHHHHHHHCCCCC
T ss_conf 5627999999985158633
No 256
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=37.67 E-value=35 Score=15.86 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 99999999970891670140488764206889999999996699399750
Q gi|254780676|r 215 SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 215 SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
.+++++..++.-..-.-++-+|..==-+-+++.+ +..+|||++||.
T Consensus 142 g~~~i~~i~~~~~~~~~~tkILaASiR~~~~v~~----a~~~Gad~iTip 187 (220)
T PRK12653 142 GIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALD----CLLAGCESITLP 187 (220)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH----HHHCCCCEEECC
T ss_conf 2668999999999769998899983899999999----998699999839
No 257
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=37.60 E-value=35 Score=15.85 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
......|..+|+.-...|.+...|.-.|. -. .|...-.+.|++|.+... +.|.+ -.=-.+.+.++.++++|.+.
T Consensus 25 ~~~~gdP~~~a~~~~~~g~d~i~ivDLda--~~-~~~~~n~~~i~~i~~~~~-~pi~v--gGGIrs~e~~~~~l~~Ga~k 98 (229)
T pfam00977 25 LVYAGDPVELAKRYEEEGADELHFVDLDA--AK-EGRPVNLDLIEEIAEEVF-IPVQV--GGGIRSLEDAERLLSAGADK 98 (229)
T ss_pred CEECCCHHHHHHHHHHCCCCEEEEEECCC--CC-CCCHHHHHHHHHHHHHCC-CCEEE--ECCEEEHHHHHHHHHCCCCE
T ss_conf 36779999999999987999899996866--30-268106999999998669-87899--64561189999999769989
Q ss_pred HHHCCC
Q ss_conf 320138
Q gi|254780676|r 192 FNHNLE 197 (329)
Q Consensus 192 ~nHNiE 197 (329)
+.=|-+
T Consensus 99 vvigs~ 104 (229)
T pfam00977 99 VIIGTA 104 (229)
T ss_pred EEECCC
T ss_conf 995860
No 258
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.52 E-value=35 Score=15.84 Aligned_cols=198 Identities=14% Similarity=0.171 Sum_probs=105.2
Q ss_pred CHHHCCCCCC----CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8245001799----866899999999749823652578878767508972699986652235352234467899888823
Q gi|254780676|r 41 PDWIRVRAPV----SSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQ 116 (329)
Q Consensus 41 P~Wlk~~~p~----~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~ 116 (329)
+.|+++++-. .-.-.++...+.+++.-||=.- . +..+... |.- +.-... -|+++..|- ..+
T Consensus 33 ~~~~~iPIiaAnMDTV~~~~mA~~l~k~GglgvLHR--~-~~e~~~~-----~~~--~~~~~~-~~~~iSvGi----~~~ 97 (326)
T PRK05458 33 PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR--F-DPEARIP-----FIK--DMHERG-LIASISVGV----KDD 97 (326)
T ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEEE--C-CHHHHHH-----HHH--HCCCCC-CEEEEEECC----CHH
T ss_conf 852278888589897488899999997898689985--5-8899999-----998--523237-279999479----989
Q ss_pred HHHHHHHHHHHHCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 57999999997077--5189850544534532589999999999853358689981546234468999874107023320
Q gi|254780676|r 117 EPENISWAVRSMKL--SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329)
Q Consensus 117 EP~rvA~av~~l~L--k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329)
+-.++. ++...++ ++++| |...|-...+.+.|+.||+..|++.| +-.=-...++.+.|+++|.|.+-=
T Consensus 98 ~~~~i~-~l~~~~~~~~~i~i------DvAhG~~~~~~~~i~~ik~~~~~~~i---iaGNVaT~e~~~~L~~~Gad~VkV 167 (326)
T PRK05458 98 EYDFID-QLAAEGLTPEYITI------DIAHGHSDSVINMIKHIKKHLPETFV---IAGNVGTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHH-HHHHCCCCCCEEEE------ECCCCCHHHHHHHHHHHHHHCCCCCE---EECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999-99856999777999------80564428999999999987899839---965431899999999749999996
Q ss_pred CCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf 1383000275638970358--99999999997089167014048876420688999999999669939975022278610
Q gi|254780676|r 195 NLETVASNYLMVRPGARYF--HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 195 NiETV~rLy~~VRp~a~Y~--rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
.|--=---+-++..+..|- +=-.++.-++.+...|..- |.+- +.-+|..++ .+|-|.+-+|-.|.-+..
T Consensus 168 GIG~Gs~CTTR~~tGvG~p~~q~sai~~ca~~~~~~iiaD-GGi~----~~GDi~KAl----a~GAd~VM~G~~~Ag~~E 238 (326)
T PRK05458 168 GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIAD-GGIR----THGDIAKSI----RFGATMVMIGSLFAGHEE 238 (326)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-CCCC----CCCHHHHHH----HCCCCEEEECCHHCCCCC
T ss_conf 7779875203501354775899999999999727977973-6858----747899998----648988986712237777
No 259
>PRK06361 hypothetical protein; Provisional
Probab=37.43 E-value=35 Score=15.83 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC----CEEEEEC-CCCCCCHHH-HHHHHHCCCHH
Q ss_conf 79999999970775189850544534532589999999999853358----6899815-462344689-99874107023
Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS----TTIEVLT-PDFLRKPHA-LEKVVSAKPDV 191 (329)
Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~----~~IEvLi-PDf~G~~~a-l~~v~~A~pdV 191 (329)
++..|+|.+.+|++|+.||-=.+-=-.+.+-.++.+.++.+++. ++ ..||+-+ || |..+. .+.+.+-...+
T Consensus 17 i~Ema~aA~~~G~~yiaITDHs~~~~~~~~l~~~~~~~~~~~~~-~~i~iL~GiEv~il~~--g~ld~~~~~l~~ld~~i 93 (216)
T PRK06361 17 PSELVRRARVLGYRAIAITDHADASNLEEILEKLVPAAEELSLY-WDIEVIPGVELTHVPP--ELIPKLAKKARDLGAEI 93 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCC--CCCCCHHHHHHHCCCEE
T ss_conf 99999999986990999963888667888999999999987515-8977998789703687--65453578998679769
Q ss_pred H-HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf 3-2013830002756389703589999999999708-9167014048876420688999999999669939975022278
Q gi|254780676|r 192 F-NHNLETVASNYLMVRPGARYFHSLRLLQRVKELD-PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329)
Q Consensus 192 ~-nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~-~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329)
. -|. ..+.. +..... .++ |-+.. -+|..--|++ .+|..+. -++.|+-+= |. -+|
T Consensus 94 asvH~----~~~~~---~~~~~~----~~~-Aienp~VdII~HPg~i------~~e~a~~---Aae~gtaLE-IN--a~p 149 (216)
T PRK06361 94 VVVHG----ETIVE---PVAPGT----NLA-AISCEDVDILAHPGLI------TEEDAAL---AAENGVFLE-IT--ARK 149 (216)
T ss_pred EEEEC----CCCHH---HHHHHH----HHH-HHHCCCCCEEECCCCC------CHHHHHH---HHHHCCEEE-EE--CCC
T ss_conf 99816----62011---567689----999-9858995587389842------5899999---998195899-96--897
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 6100780002384699999999997496243404
Q gi|254780676|r 270 TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 270 s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329)
.+ +. .. ..+-+.|.+.|.+.+-+.
T Consensus 150 ~r--ld-----~~---~~~~r~A~~~Gv~i~I~s 173 (216)
T PRK06361 150 GH--NL-----TN---GHVARLAREAGAPLVINT 173 (216)
T ss_pred CC--CC-----CC---HHHHHHHHHCCCEEEEEC
T ss_conf 76--47-----77---999999998699699978
No 260
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=37.25 E-value=35 Score=15.82 Aligned_cols=43 Identities=35% Similarity=0.366 Sum_probs=33.2
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..||||. -+|+||-..-|..|.+.+.+|.+.+|+..+=+.+
T Consensus 72 daDivVitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvt 121 (309)
T cd05294 72 GSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99999987898899599878999989999999998764269984999768
No 261
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=36.55 E-value=36 Score=15.74 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 77518985054453453--258999999999985335868998154623446899987
Q gi|254780676|r 129 KLSHVVITSVDRDDLDD--GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKV 184 (329)
Q Consensus 129 ~Lk~vViTSV~RDDL~D--gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v 184 (329)
.+++.|+-.-+=||-+- .-|...+-+|.+--...-+--|=++.-|+-..-+|++.+
T Consensus 125 ~l~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A~A~rei 182 (274)
T cd01133 125 VLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEV 182 (274)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 6533799983455540578999999999999999728985999971868999999988
No 262
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=36.52 E-value=36 Score=15.74 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE-----EEEECCCCCCCHHHHHHH
Q ss_conf 8888235799999-9997077518985054453453258999999999985335868-----998154623446899987
Q gi|254780676|r 111 QPLDPQEPENISW-AVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT-----IEVLTPDFLRKPHALEKV 184 (329)
Q Consensus 111 ~~~D~~EP~rvA~-av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~-----IEvLiPDf~G~~~al~~v 184 (329)
..+|.+|-...-. .++.++=+-|||-. .|-|+..+..-....++.||-.. .=+--||+ -...|+.+
T Consensus 57 ~~P~eeeq~~~y~~i~~~~~~kpV~iRt------lD~G~DK~l~~~~~~~E~NP~LG~RGiR~~L~~p~l--f~~QlrAi 128 (292)
T pfam02896 57 ELPTEDEQFEAYKGVLEAMNGRPVTVRT------LDIGGDKELPYLDEPEEMNPFLGWRGIRLGLDYPEI--FRTQLRAI 128 (292)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE------ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHHH
T ss_conf 8997999999999999835998489983------037866668888776666840245455455017076--99999999
Q ss_pred HHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----C-CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 41070233201383000275638970358999999999970----8-916701404887642068899999999966993
Q gi|254780676|r 185 VSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL----D-PLIFTKSGIMLGLGETRNEILQLMDDLRTADVD 259 (329)
Q Consensus 185 ~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~----~-~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329)
+.|..+ + .++=++|-|+.-..+.+--++++.+++. + ..-..+-|+|+ |+..=++ .+++|.+. ||
T Consensus 129 lrAa~~--g----~l~Im~PmVt~~~E~~~~r~~~~~~~~~l~~~~~~~~~~~iG~Mi---EvPsaa~-~~d~l~~~-~D 197 (292)
T pfam02896 129 LRASAF--G----NLEIMFPMVATVEELREAKRIIEEVKAELDKELGVDPDIKVGIMI---EIPSAAL-LADQLAKE-VD 197 (292)
T ss_pred HHHHHC--C----CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE---ECHHHHH-HHHHHHHH-CC
T ss_conf 998720--8----807983587998999999999999999998617978784189998---2469999-59999863-68
Q ss_pred EEECC-----HHCCC-CCCCCCCCCCC---CHHHHHHHHH---HHHHCCCCEEECCCCCCCC
Q ss_conf 99750-----22278-61007800023---8469999999---9997496243404830010
Q gi|254780676|r 260 FLTMG-----QYLQP-TRKHHKVESFV---TPQDFKSYET---IAYSKGFLMVSASPLTRSS 309 (329)
Q Consensus 260 ilTiG-----QYL~P-s~~h~pV~ryv---~P~eF~~~~~---~a~~~Gf~~V~SgPlVRSS 309 (329)
++.|| ||+=- .+..-.|..+| +|.-..-++. .|.+.|...-.||-+.-..
T Consensus 198 F~SIGTNDLtQy~la~DR~n~~v~~l~d~~~Pavlr~i~~vi~~a~~~g~~vsiCGE~a~dp 259 (292)
T pfam02896 198 FFSIGTNDLTQYTLAVDRDNERVAYLYDPLHPAVLRLIKQVIRAAHRKGKWVGICGEMAGDP 259 (292)
T ss_pred EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 77964438888988743577333543699976999999999999998799999808876798
No 263
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=36.37 E-value=36 Score=15.72 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 82357999999997077518985054453453258999999999985335868998--1546234468999874107023
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV--LTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv--LiPDf~G~~~al~~v~~A~pdV 191 (329)
|...-+.-.+.+.+.|.++.=+--.|---.|.-+- --..|++||+..+...++| .+-+ -...++.+.++|+|.
T Consensus 14 d~~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~t~--g~~~i~~ir~~~~~~plDvHLMv~~---P~~~i~~~~~aGad~ 88 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTI--GPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGATT 88 (223)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC--CHHHHHHHHHHCCCCCEEEEEEECC---HHHHHHHHHHCCCCE
T ss_conf 99999999999997699989982767970775570--9599999996189975377898339---899999999739978
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
+.=..|+.+.+. ++++.+|+.| .|.|+-+.-+-..+.+...+.+ +|.+.|
T Consensus 89 i~~H~Ea~~~~~-------------~~i~~ik~~g----~k~GlalnP~T~~~~l~~~l~~-----~D~Vli 138 (223)
T PRK08745 89 ISFHPEASRHVH-------------RTIQLIKSHG----CQAGLVLNPATPVDILDWVLPE-----LDLVLV 138 (223)
T ss_pred EEEEECCCCCHH-------------HHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHH-----CCEEEE
T ss_conf 999606442999-------------9999999839----8446774699987999998864-----798999
No 264
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=36.29 E-value=28 Score=16.51 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=7.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 80002384699999999
Q gi|254780676|r 275 KVESFVTPQDFKSYETI 291 (329)
Q Consensus 275 pV~ryv~P~eF~~~~~~ 291 (329)
++..+|+|...+.++++
T Consensus 141 ~w~~lVP~~Va~~i~e~ 157 (170)
T PRK01153 141 PWEELVPKSVAEVIKEI 157 (170)
T ss_pred CHHHHCCHHHHHHHHHC
T ss_conf 85685899999999994
No 265
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.28 E-value=36 Score=15.71 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-CEE-ECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999970891670140488764206889999999996699-399-750222786100780002384699999999997
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV-DFL-TMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS 294 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv-dil-TiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329)
++.+.|.+.+.++.-=|.+ +|-+.+.+-++++-|++.|. |++ -+|-. ++|+.+++++ +
T Consensus 41 eiv~~A~~e~ad~IglSsL---~g~h~~~~~~l~~~L~e~G~~di~v~vGG~-------------Ip~~d~~~l~----~ 100 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSL---SGGHMTLFPEVIELLRELGAGDILVVGGGI-------------IPPEDYELLK----E 100 (122)
T ss_pred HHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHCCCCCCEEEEECC-------------CCHHHHHHHH----H
T ss_conf 9999999739989999646---554478999999999976999846999456-------------4989999999----7
Q ss_pred CCCCEEEC
Q ss_conf 49624340
Q gi|254780676|r 295 KGFLMVSA 302 (329)
Q Consensus 295 ~Gf~~V~S 302 (329)
+||..|+.
T Consensus 101 ~Gv~~vf~ 108 (122)
T cd02071 101 MGVAEIFG 108 (122)
T ss_pred CCCCEEEC
T ss_conf 79988989
No 266
>PRK08904 consensus
Probab=36.19 E-value=36 Score=15.70 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|.++-..+|++...-|++.+=||--+ ....+.|+.+++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 18 ~~~~~~a~~~a~al~~~Gi~~iEiTlrt---------p~a~~~i~~l~~~~p~~~vGaGTV---l~~e~~~~a~~aGA~F 85 (207)
T PRK08904 18 IDDLSTAVDLSRALVEGGIPTLEITLRT---------PVGLDAIRLIAKEVPNAIVGAGTV---TNPEQLKAVEDAGAVF 85 (207)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHHCCCCEEEEEEC---CCHHHHHHHHHCCCCE
T ss_conf 6999999999999998799889995799---------139999999998689876855313---6899999999849999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|+.+ -++++++++.+-... -|.| |..|+...+ +.|++++-+ |
T Consensus 86 i-------------VSP~~~----~~v~~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vK~FPA~~~GG 137 (207)
T PRK08904 86 A-------------ISPGLH----ESLAKAGHNSGIPLI--PGVA-----TPGEIQLAL----EHGIDTLKLFPAEVVGG 137 (207)
T ss_pred E-------------ECCCCC----HHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCHHCCC
T ss_conf 9-------------848998----999999998399765--7869-----999999999----87999899776222088
Q ss_pred H-HCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2-22786100780002-----3846999999999974962434048300103189999999999854
Q gi|254780676|r 265 Q-YLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 265 Q-YL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~ 325 (329)
. ||+-=+.-+|=.+| |+++.+.+|-.. -+...|..+-|+...+-+...|..+.+.-++
T Consensus 138 ~~~lkal~~pfp~i~~~pTGGV~~~N~~~yl~~---~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~ 201 (207)
T PRK08904 138 KAMLKALYGPYADVRFCPTGGISLATAPEYLAL---PNVLCVGGSWLTPKEAVKNKDWDTITRLAKE 201 (207)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC---CCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf 999998746599980886589898789999818---9849998814389999974899999999999
No 267
>pfam05902 4_1_CTD 4.1 protein C-terminal domain (CTD). At the C-terminus of all known 4.1 proteins is a sequence domain unique to these proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24-kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates.
Probab=36.03 E-value=37 Score=15.69 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 518985054453453258999999999985335868998
Q gi|254780676|r 131 SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 131 k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
|-+|||+=+ |+ |.- +-.|..|++-++.||+..|+-
T Consensus 71 krIvItgD~--DI-DHd-qALAqAI~EA~~qhPDMsVtK 105 (114)
T pfam05902 71 KRIVITGDA--DI-DHD-QALAQAIKEAKEQHPDMSVTK 105 (114)
T ss_pred EEEEEECCC--CC-CHH-HHHHHHHHHHHHCCCCCEEEE
T ss_conf 899982687--63-468-999999999986099835899
No 268
>pfam06778 Chlor_dismutase Chlorite dismutase. This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyses the disproportionation of chlorite into chloride and oxygen. Note that many family members are hypothetical proteins.
Probab=35.84 E-value=37 Score=15.69 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCCEEE-EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHH----HHHHHH-HC-CCCEEECCC
Q ss_conf 140488-76420688999999999669939975022278610078000238469999----999999-74-962434048
Q gi|254780676|r 232 KSGIML-GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKS----YETIAY-SK-GFLMVSASP 304 (329)
Q Consensus 232 KSGlMv-GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~----~~~~a~-~~-Gf~~V~SgP 304 (329)
-+.+|+ =++++.+++-++..+|+.. ++|+||.|+...+-|. .|.+|.. ....-. ++ ..+++.-=|
T Consensus 37 DaDlmlw~~~~~~~~lq~~~~~~~~T-----~lg~~l~~~~S~~sv~---~~s~y~~~~~~~~a~l~~~~P~~~y~~~YP 108 (193)
T pfam06778 37 DSDFMLWIHREDMDELQAAEARFNRT-----RLGDYLEPTYSYVSVY---KPSPYNAGNSHVPAFLYPELPPLKYFVAYP 108 (193)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHC-----CCCCCCEEEEEEEEEE---CCCCCCCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 67689998589999999999999742-----4545430356568762---243444678774640147899876799996
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 300103189999999999854
Q gi|254780676|r 305 LTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 305 lVRSSY~A~e~~~~~~~~~~~ 325 (329)
++||- +-|..-.+.|++
T Consensus 109 m~K~r----~WYlLp~eeR~~ 125 (193)
T pfam06778 109 MKKSR----DWYLLPFEERRR 125 (193)
T ss_pred CCCCC----HHHCCCHHHHHH
T ss_conf 67784----042499999999
No 269
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=35.81 E-value=37 Score=15.66 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=57.4
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf 988245001799866899999999749823652578878767508972699986652235352234467899-8888235
Q gi|254780676|r 39 QKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKP-QPLDPQE 117 (329)
Q Consensus 39 ~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P-~~~D~~E 117 (329)
-.++|+-+-.........+=+++|+.+-.-- |.-. | +|+|.
T Consensus 80 aGA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG-----------------------------------~v~N-P~TPl~~-- 121 (216)
T TIGR01163 80 AGADIITVHAEATEHIHRLLQLIKELGAKAG-----------------------------------IVLN-PATPLEA-- 121 (216)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHCCCCEE-----------------------------------EEEC-CCCCHHH--
T ss_conf 0899899843776267999999997189706-----------------------------------8867-9999878--
Q ss_pred HHHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHHHH-HHHHH-------HH--HHCCCCEEEEECCCCCC-CHHHHHHH
Q ss_conf 79999999970--775189850544534532589999-99999-------98--53358689981546234-46899987
Q gi|254780676|r 118 PENISWAVRSM--KLSHVVITSVDRDDLDDGGAQHFA-EVISA-------IR--ESAPSTTIEVLTPDFLR-KPHALEKV 184 (329)
Q Consensus 118 P~rvA~av~~l--~Lk~vViTSV~RDDL~DgGA~hfa-~~I~~-------Ir--~~~P~~~IEvLiPDf~G-~~~al~~v 184 (329)
++.+ .+..|.|.||+ |=.|-|-|- .+++. |+ +.++.+.|||=- | +.+....+
T Consensus 122 -------~~~~L~~~D~VLlMSVn----PGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDG----Gv~~~ni~~~ 186 (216)
T TIGR01163 122 -------LEYVLEDVDLVLLMSVN----PGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDG----GVNEDNIAEV 186 (216)
T ss_pred -------HHHHHHHCCEEEEEEEE----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCHHHHHHH
T ss_conf -------99898762989988760----79988411057899999999999860279955899717----9897679999
Q ss_pred HHCCCHHH
Q ss_conf 41070233
Q gi|254780676|r 185 VSAKPDVF 192 (329)
Q Consensus 185 ~~A~pdV~ 192 (329)
.+||.|+|
T Consensus 187 ~~AGAD~~ 194 (216)
T TIGR01163 187 AEAGADIL 194 (216)
T ss_pred HHCCCCEE
T ss_conf 97589899
No 270
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.59 E-value=37 Score=15.64 Aligned_cols=172 Identities=22% Similarity=0.251 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|+++-..+++|...-|++.+=||--+- + ..+.|+++++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 21 ~~~~~~a~~~~~al~~gGi~~iEiTl~t~------~---a~~~I~~l~~~~p~~~iGaGTV---~~~e~~~~a~~aGA~F 88 (210)
T PRK07455 21 APDLELGLQMAEAVAAGGMRLIEITWNSD------Q---PAELISQLREKLPECIIGTGTL---LTLEDLEEAIAAGAQF 88 (210)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC------C---HHHHHHHHHHHCCCCEEEEEEC---CCHHHHHHHHHCCCCE
T ss_conf 59999999999999987998899968998------8---9999999998789968988818---7899999999869999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE------C-C
Q ss_conf 32013830002756389703589999999999708916701404887642068899999999966993997------5-0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT------M-G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT------i-G 264 (329)
+ |-|.- +.++++.+++.+--.. -|.| |..|+.+++ +.|++++- + |
T Consensus 89 i-------------VSP~~----~~~vi~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vKlFPA~~~GG 140 (210)
T PRK07455 89 C-------------FTPHV----DLELIQAAVAADIPII--PGAL-----TPTEIVTAW----QAGASCVKVFPVQAVGG 140 (210)
T ss_pred E-------------ECCCC----CHHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCHHCCC
T ss_conf 9-------------86888----8999999998299765--8869-----999999999----86998477505132067
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEE-CCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf -222786100780002-----3846999999999974962434-04830010318999999999985413
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVS-ASPLTRSSYHAGDDFLRLKNNRRQHL 327 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~-SgPlVRSSY~A~e~~~~~~~~~~~~~ 327 (329)
.||+-=+.-+|-.+| |+++-+.+|- +.|...|- .+.|+.-++-+.+.|..+.++.++-+
T Consensus 141 ~~ylkal~~p~p~i~~~ptGGV~~~n~~~yl----~ag~~~vg~Gs~l~~~~~i~~~d~~~I~~~A~~~v 206 (210)
T PRK07455 141 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFI----QAGAIAVGLSSQLFPKTLLAAQNWPAITQRAELLL 206 (210)
T ss_pred HHHHHHHHCCCCCCCEEECCCCCHHHHHHHH----HCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998654899938878998988899999----68997999884618988886189999999999999
No 271
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.56 E-value=37 Score=15.64 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHCC---CEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 82357999999997077---51898505-445345325899999999998533586899815462344689998741070
Q gi|254780676|r 114 DPQEPENISWAVRSMKL---SHVVITSV-DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329)
Q Consensus 114 D~~EP~rvA~av~~l~L---k~vViTSV-~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329)
+...+....+..+.+.. +|++|-.= .+-.-+..-+.||++.++.+.+.. ..|+++.-..+.+..+.+.+.-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~----~~Vvl~g~~~e~e~~~~i~~~~~ 231 (334)
T COG0859 156 DFPLPRPPIELAKNLAKFDRPYIVINPGASRGSAKRWPLEHYAELAELLIAKG----YQVVLFGGPDEEERAEEIAKGLP 231 (334)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC----CEEEEEECHHHHHHHHHHHHHCC
T ss_conf 54555478889865420379879996473466778899999999999999769----98999408789999999997367
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 23320138300027563897035899999999997089167014048
Q gi|254780676|r 190 DVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM 236 (329)
Q Consensus 190 dV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM 236 (329)
+... +++..+..+...+|..+ +.-|..-||+|
T Consensus 232 ~~~~------------l~~k~sL~e~~~li~~a---~l~I~~DSg~~ 263 (334)
T COG0859 232 NAVI------------LAGKTSLEELAALIAGA---DLVIGNDSGPM 263 (334)
T ss_pred CCCC------------CCCCCCHHHHHHHHHCC---CEEECCCCHHH
T ss_conf 6612------------17999999999999669---89991488799
No 272
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=35.54 E-value=25 Score=16.85 Aligned_cols=60 Identities=7% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHHHHHHCCCEEEECCC-----EEEEEEECHHHHHHHHH-----HHHHCCCCEEECCHHCCCCCCCCCCC
Q ss_conf 999999970891670140-----48876420688999999-----99966993997502227861007800
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSG-----IMLGLGETRNEILQLMD-----DLRTADVDFLTMGQYLQPTRKHHKVE 277 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSG-----lMvGLGEt~eEi~e~l~-----DLr~~gvdilTiGQYL~Ps~~h~pV~ 277 (329)
+.++.+++.|.-+..|.. -=..+-++.+|+.+.+. ....-|-+-+-|-+|+. ..+|+.|+
T Consensus 146 ea~~~a~~iGyPv~iKAs~GGGGrGmriv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~-~~RHIEVQ 215 (458)
T PRK12833 146 AALEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIA-RARHIEVQ 215 (458)
T ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCEEEEEE
T ss_conf 99999986597542133258998710795264114899999999999726997647876136-75079999
No 273
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=35.16 E-value=38 Score=15.59 Aligned_cols=104 Identities=28% Similarity=0.404 Sum_probs=78.7
Q ss_pred EECCCCCCCCCCCC--------------CCCC-----------CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 86652235352234--------------4678-----------9988882357999999997077518985054453453
Q gi|254780676|r 91 ILGAICTRACTFCN--------------VATG-----------KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDD 145 (329)
Q Consensus 91 ilG~~CTR~C~FC~--------------V~~G-----------~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D 145 (329)
|=|-+--|+|+||- |.|| |=-+-+++.|....--+.+-+++|+-=|=+-=-|.-=
T Consensus 27 iPG~~t~RGCAyaGaKgVi~GpiKD~iHi~HGPvGC~~ytw~tkRy~~~~~~g~g~~fPiekF~~~Y~~~TD~~EsdiVF 106 (510)
T TIGR01862 27 IPGLITERGCAYAGAKGVIGGPIKDMIHISHGPVGCTYYTWGTKRYPSDNENGVGANFPIEKFFLKYVFSTDMQESDIVF 106 (510)
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHEEEEEEEEECCEECCEEE
T ss_conf 88630311266628874123221267888746724576678830115688888764355303011368851345501476
Q ss_pred CHHHHHHHHHHHHHHHCCC-CEEEE-------ECCCCCCCHHHHHHHHHC--C-CHHHHHCCC
Q ss_conf 2589999999999853358-68998-------154623446899987410--7-023320138
Q gi|254780676|r 146 GGAQHFAEVISAIRESAPS-TTIEV-------LTPDFLRKPHALEKVVSA--K-PDVFNHNLE 197 (329)
Q Consensus 146 gGA~hfa~~I~~Ir~~~P~-~~IEv-------LiPDf~G~~~al~~v~~A--~-pdV~nHNiE 197 (329)
||..-.+++|.+.-+.-|. -.|-| ||-| +-+|+.+.+.+ + .|||.=|-|
T Consensus 107 GG~kkLk~~I~EA~~~FP~~k~~~vY~TCp~gLIGD---DI~Ava~~v~~E~~~~dv~~~~cp 166 (510)
T TIGR01862 107 GGEKKLKKAIHEAFEEFPEIKAISVYATCPTGLIGD---DIEAVAKEVSKEIGDVDVVAVNCP 166 (510)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECC---CHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 705788888999997374204147873167200043---478999997552689866988778
No 274
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative; InterPro: IPR011916 This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II..
Probab=35.07 E-value=37 Score=15.64 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 9999999853358689981546234468999874107023
Q gi|254780676|r 152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
.=+|+++|+..|++.|.||+ -.|. --+++++||+
T Consensus 17 TPvi~~LK~~yP~a~iDvLl-----Y~eT-~p~L~~NPdI 50 (347)
T TIGR02201 17 TPVIRALKKRYPDAKIDVLL-----YRET-VPLLSENPDI 50 (347)
T ss_pred HHHHHHHHHCCCCCCEEEEE-----HHHH-HHHHHCCCCH
T ss_conf 79999985118885043021-----0315-8887628833
No 275
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=35.04 E-value=21 Score=17.34 Aligned_cols=109 Identities=18% Similarity=0.342 Sum_probs=65.5
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCC-CCEE
Q ss_conf 874107023320138300027563897035899999999997089167014048876420688999999999669-9399
Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTAD-VDFL 261 (329)
Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~g-vdil 261 (329)
.+++.+|+-.+=-=+|+.|||=. | =++++=+++++.=|- -|.||=+|=- =-..+.+.|.+.| |.||
T Consensus 611 ImiN~NPETVSTDyD~sDrLYFE--p-lt~E~Vm~I~e~E~~--------~GVIVq~GGQ--tp~nlA~~L~~~GG~~iL 677 (1089)
T TIGR01369 611 IMINYNPETVSTDYDTSDRLYFE--P-LTFEDVMNIIELEKP--------EGVIVQFGGQ--TPLNLAKELEEAGGVPIL 677 (1089)
T ss_pred EEEECCCCCCCCCHHHHHHCCCC--C-CCCCCCEEHEEECCC--------CEEEEECCCH--HHHHHHHHHHHCCCCEEE
T ss_conf 99977899743666651011587--6-350310011000586--------6799974873--267899999970893173
Q ss_pred ECC--------------HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
Q ss_conf 750--------------22278610078000238469999999999749624340483001031
Q gi|254780676|r 262 TMG--------------QYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYH 311 (329)
Q Consensus 262 TiG--------------QYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~ 311 (329)
==- |-|. .--+|=-+|-.-.--++-+++|.++||.- |||.||=
T Consensus 678 GTS~~~ID~AEDR~kFs~~l~--~Lgi~QP~~~~a~s~eea~~~A~~iGYPv-----lvRPSYV 734 (1089)
T TIGR01369 678 GTSPESIDRAEDREKFSELLD--ELGIPQPEWKIATSVEEAKEFASEIGYPV-----LVRPSYV 734 (1089)
T ss_pred CCCHHHHHHHCCHHHHHHHHH--HCCCCCCCCCEECCHHHHHHHHHHCCCCE-----EECCCCC
T ss_conf 688578751318679999997--15879898852728799999985469928-----9816830
No 276
>PTZ00117 malate dehydrogenase; Provisional
Probab=34.92 E-value=33 Score=15.98 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 54453453258999999999985335868998
Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
-+|+||-..-+..+.+.+.+|++.+|+..+=+
T Consensus 85 ~tR~dLl~~N~~I~~~i~~~i~~~~p~aiiiv 116 (313)
T PTZ00117 85 MTREDLIGVNGKIMKSVAESVKKHCPNAFVIC 116 (313)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 98899998767778888877623589808997
No 277
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.76 E-value=38 Score=15.55 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 38970358999999999970891670140488764206889999999996699399750222786100780002384699
Q gi|254780676|r 206 VRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDF 285 (329)
Q Consensus 206 VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF 285 (329)
..++-+++.-++.++..++.++++ .=+++|=|+..+++.+.+.++. +.=.+.=+|.-=.|..-....+=|+.|..+
T Consensus 201 l~~~Kg~~~Li~A~~~l~~~~~~~---~l~ivG~G~~~~~l~~~i~~~~-l~~~V~f~G~~~~~~~~~~~aDi~v~pS~~ 276 (358)
T cd03812 201 FSEQKNHEFLIEIFAELLKKNPNA---KLLLVGDGELEEEIKKKVKELG-LEDKVIFLGVRNDVPELLQAMDVFLFPSLY 276 (358)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCCC---EEEEECCCHHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHCCEEEECCCC
T ss_conf 766517188999999865108882---3999627527878999999829-872499746701378999739899974876
Q ss_pred HHHHH---HHHHCCCCEEEC
Q ss_conf 99999---999749624340
Q gi|254780676|r 286 KSYET---IAYSKGFLMVSA 302 (329)
Q Consensus 286 ~~~~~---~a~~~Gf~~V~S 302 (329)
|-+.. +|+.+|-..|+|
T Consensus 277 Egf~~v~lEAma~G~PVVas 296 (358)
T cd03812 277 EGLPLVLIEAQASGLPCILS 296 (358)
T ss_pred CCCCHHHHHHHHHCCCEEEE
T ss_conf 78847999999949989996
No 278
>pfam08924 DUF1906 Domain of unknown function (DUF1906). This domain is found in a set of uncharacterized hypothetical bacterial proteins.
Probab=34.71 E-value=38 Score=15.54 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=4.8
Q ss_pred HHCCCCEEECCHHCC
Q ss_conf 966993997502227
Q gi|254780676|r 254 RTADVDFLTMGQYLQ 268 (329)
Q Consensus 254 r~~gvdilTiGQYL~ 268 (329)
.+.|..++.|=|+.+
T Consensus 47 ~~~Gl~~~pIyq~~~ 61 (135)
T pfam08924 47 LAAGLKVFPIYQYGK 61 (135)
T ss_pred HHCCCEEEEEEECCC
T ss_conf 978987999985189
No 279
>KOG2368 consensus
Probab=34.71 E-value=38 Score=15.54 Aligned_cols=141 Identities=19% Similarity=0.317 Sum_probs=87.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH------HHHCCCHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998533586899815462344689998------7410702332-0138300027563897035899999999997
Q gi|254780676|r 152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEK------VVSAKPDVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKE 224 (329)
Q Consensus 152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~------v~~A~pdV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~ 224 (329)
.++++.||+ .|++.--||+|..+|-+.|+.. |+.|.-|.|. .||++.- .-+..|--.+++.+++
T Consensus 75 ~ev~k~i~~-~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNcti--------ees~~rf~~v~kaA~~ 145 (316)
T KOG2368 75 NEVMKGIRK-FPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTI--------EESLKRFMEVLKAAQE 145 (316)
T ss_pred HHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHCCCCCCH--------HHHHHHHHHHHHHHHH
T ss_conf 899976522-8886564117644658999865861577421213454221478548--------9999999999999997
Q ss_pred CCCEEEECCCEEEEEE------ECHHHHHHHHHHHHHCCCCEEECCHHCC---C---CCCCCCCCCCCCHHHHH-----H
Q ss_conf 0891670140488764------2068899999999966993997502227---8---61007800023846999-----9
Q gi|254780676|r 225 LDPLIFTKSGIMLGLG------ETRNEILQLMDDLRTADVDFLTMGQYLQ---P---TRKHHKVESFVTPQDFK-----S 287 (329)
Q Consensus 225 ~~~~i~TKSGlMvGLG------Et~eEi~e~l~DLr~~gvdilTiGQYL~---P---s~~h~pV~ryv~P~eF~-----~ 287 (329)
.+-.+. --.-.-+| -+.+-|.++.+.|.+.||--+.+|.-.- | .+.--.|-+-|+++... .
T Consensus 146 ~ni~vR--GYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDT 223 (316)
T KOG2368 146 HNIRVR--GYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDT 223 (316)
T ss_pred CCCCCC--EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 497500--378888658766874889999999999847867973266104689505899999998747878841042201
Q ss_pred HHH------HHHHCCCCEEECC
Q ss_conf 999------9997496243404
Q gi|254780676|r 288 YET------IAYSKGFLMVSAS 303 (329)
Q Consensus 288 ~~~------~a~~~Gf~~V~Sg 303 (329)
|.+ .+++||++.|.|.
T Consensus 224 YGQALaNiL~slqmGi~vvDSs 245 (316)
T KOG2368 224 YGQALANILVSLQMGIRVVDSS 245 (316)
T ss_pred HHHHHHHHHHHHHHCCEEHHHH
T ss_conf 7889999999998161113111
No 280
>PRK05442 malate dehydrogenase; Provisional
Probab=34.67 E-value=38 Score=15.54 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=35.5
Q ss_pred HCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 0775189850-------5445345325899999999998533-58689981
Q gi|254780676|r 128 MKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESA-PSTTIEVL 170 (329)
Q Consensus 128 l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~IEvL 170 (329)
-+-..||||. -+|+||-..-|..|....++|.+.. |++.|=|.
T Consensus 79 ~~aDvviitag~prkPGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlVv 129 (325)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLKANGEIFTAQGKALNEVAARDVKVLVV 129 (325)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 799889980786799997489999760889999999998657987189995
No 281
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=34.58 E-value=39 Score=15.53 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=68.3
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335868-998154623446899987410702332-0138300027
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT-IEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNY 203 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~-IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy 203 (329)
.++||.-.|+-.=|.=.. +.-+.+.|+..|+..|.+. |||-+- +.+.+..-++||||++= -|+-.
T Consensus 153 HR~gLsDavliKDNHia~----~g~i~~Av~~aR~~~~~~~kIEVEve----sle~~~eAl~agaDiImLDNm~~----- 219 (280)
T COG0157 153 HRFGLSDAVLIKDNHIAA----AGSITEAVRRARAAAPFTKKIEVEVE----SLEEAEEALEAGADIIMLDNMSP----- 219 (280)
T ss_pred CCCCCCCEEEEHHHHHHH----HCCHHHHHHHHHHHCCCCCEEEEECC----CHHHHHHHHHCCCCEEEECCCCH-----
T ss_conf 137775257760447887----53599999999975899862899749----99999999974999999769999-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf 563897035899999999997089167014048876420688999999999669939975022
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329)
..-++-++.| +..+.-+.--||-+ | .+.+..-...|||++.+|--
T Consensus 220 ------e~~~~av~~l---~~~~~~~lEaSGgI-----t----~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 220 ------EELKEAVKLL---GLAGRALLEASGGI-----T----LENIREYAETGVDVISVGAL 264 (280)
T ss_pred ------HHHHHHHHHH---CCCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEEECCC
T ss_conf ------9999999974---44776699975897-----8----77899986269979980733
No 282
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.57 E-value=39 Score=15.53 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=52.2
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98665223535223446789988882357999999997077518985054453453258999999999985335868998
Q gi|254780676|r 90 MILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 90 MilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
-|++..|-|..++ +.+...+.+ .|...|+.-...|.+...|--. |--.+|. ..=.+.|++|.+.+ .+.|++
T Consensus 10 Dl~~Gk~Vrl~~G---~~~~~~~~~--dP~~~a~~~~~~Ga~~lhivDL--d~a~~g~-~~n~~~I~~i~~~~-~~pi~v 80 (240)
T PRK13585 10 DMLGGKCVQLVQG---EPGTETSYG--DPVEVAKRWVDAGAKTLHLVDL--DGAFEGS-RKNADIIEKIVEAT-DVSIQL 80 (240)
T ss_pred EEECCEEEEEECC---CCCCCEECC--CHHHHHHHHHHCCCCEEEEEEC--CCCCCCC-CCHHHHHHHHHHHC-CCCEEE
T ss_conf 9889918971461---017863668--9999999999879997999989--7721189-44499999999737-977899
Q ss_pred ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 1546234468999874107023320138300
Q gi|254780676|r 170 LTPDFLRKPHALEKVVSAKPDVFNHNLETVA 200 (329)
Q Consensus 170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV~ 200 (329)
-.=-.+.+.++.++++|.+...=|-++++
T Consensus 81 --GGGIrs~~~i~~~l~~Ga~kvvigs~~~~ 109 (240)
T PRK13585 81 --GGGIRSVEDAASLLDLGVDRVILGTAAIE 109 (240)
T ss_pred --ECCCCCHHHHHHHHHCCCCEEEECCCCHH
T ss_conf --78858799999999769989993981131
No 283
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=34.51 E-value=39 Score=15.52 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHHHHHCCCCEEE---EECCCCCCCHHHHHH
Q ss_conf 82357999999997077518985054453453258-------99999999998533586899---815462344689998
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-------QHFAEVISAIRESAPSTTIE---VLTPDFLRKPHALEK 183 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-------~hfa~~I~~Ir~~~P~~~IE---vLiPDf~G~~~al~~ 183 (329)
-.++-.+-++.+..+|++-+.+-.|-.+.++|.-+ +...++|++||+..|+..|= +|.| |-- +-+ .-
T Consensus 59 s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLce-yT~-HGH-cG 135 (330)
T COG0113 59 SLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCE-YTD-HGH-CG 135 (330)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-CCC-CC
T ss_conf 699999999999966997799808986323674332003877809999999998689729985210367-768-886-61
Q ss_pred HHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 74107023320138300027563897035899999999997089167014048876
Q gi|254780676|r 184 VVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL 239 (329)
Q Consensus 184 v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL 239 (329)
|++.+-.| -|=||++.|-+. -+.+| ++|.+|..-|++|=|.
T Consensus 136 il~~~~~V--~ND~Tle~l~k~------------Avs~A-eAGAdivAPSdMMDGr 176 (330)
T COG0113 136 ILDDGGYV--DNDETLEILAKQ------------AVSQA-EAGADIVAPSDMMDGR 176 (330)
T ss_pred CCCCCCEE--CCHHHHHHHHHH------------HHHHH-HCCCCEECCCCCCCCH
T ss_conf 15589616--164789999999------------99999-7079755253333533
No 284
>PRK13123 consensus
Probab=34.17 E-value=39 Score=15.49 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf 882357999999997077518985054453453258
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA 148 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA 148 (329)
+|.+.-.++..+..+-|...+-|--.=-|-+.||-.
T Consensus 26 P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPv 61 (256)
T PRK13123 26 GGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPV 61 (256)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
T ss_conf 997899999999997699999978998886665799
No 285
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=34.15 E-value=23 Score=17.15 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHH-HCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 999999-669939975022278610078000238469999999999749624
Q gi|254780676|r 249 LMDDLR-TADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLM 299 (329)
Q Consensus 249 ~l~DLr-~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~ 299 (329)
+|+|+. .+||..-|+..+|.... .|.++.=+...+.+.++||.-
T Consensus 2 Ti~dvA~~aGVS~sTVSr~ln~~~-------~Vs~~tr~rV~~~a~~lgY~p 46 (70)
T smart00354 2 TIKDVARLAGVSKATVSRVLNGNG-------RVSEETREKVLAAMEELGYIP 46 (70)
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHCCCC
T ss_conf 899999998959999999977999-------899999999999999978998
No 286
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=33.98 E-value=39 Score=15.46 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=33.6
Q ss_pred CCCEEEEE-------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77518985-------05445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVIT-------SVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViT-------SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..|||| .-+|+||-..-|..|.+.+.+|.+.+|+..+=+.+
T Consensus 66 daDvvVitaG~~rkpg~tR~dll~~Na~I~k~i~~~i~~~~p~~ivivvt 115 (300)
T cd00300 66 DADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999987898999799889999988899999999998419971899857
No 287
>pfam00356 LacI Bacterial regulatory proteins, lacI family.
Probab=33.84 E-value=22 Score=17.18 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHH-HCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999-66993997502227861007800023846999999999974962
Q gi|254780676|r 249 LMDDLR-TADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329)
Q Consensus 249 ~l~DLr-~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329)
+|.|+. .+||.+-|+.-+|.-.. .+.|+.=+...+.+.++||.
T Consensus 1 Ti~DIA~~agVS~~TVSr~ln~~~-------~vs~~tr~rI~~~a~~lgY~ 44 (46)
T pfam00356 1 TIKDVARLAGVSKATVSRVLNNPE-------RVSEETREKVEAAMEELGYV 44 (46)
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHCCC
T ss_conf 999999998979999999987979-------89999999999999997899
No 288
>KOG2876 consensus
Probab=33.78 E-value=33 Score=15.96 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHCCCEEEEEC----CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 65223535223446789988-----8823579999999970775189850----54453453258999999999985335
Q gi|254780676|r 93 GAICTRACTFCNVATGKPQP-----LDPQEPENISWAVRSMKLSHVVITS----VDRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 93 G~~CTR~C~FC~V~~G~P~~-----~D~~EP~rvA~av~~l~Lk~vViTS----V~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
-..|-=+|.||-+.+|.|.- +-..||.++|.-...-+..-.-+|. |- -|+.+-|++.-. ...+|
T Consensus 18 te~cnlrc~ycMpseg~~l~pk~~~lav~eilrl~~lF~~qgv~knrLtggeptIr-~d~~~i~~g~~~--l~gLk---- 90 (323)
T KOG2876 18 TEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QDIVPIVAGLSS--LPGLK---- 90 (323)
T ss_pred HHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHC--CCHHH----
T ss_conf 52007312120120077576410000024467764356675501554057887410-464310144412--30014----
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC
Q ss_conf 86899815462344689998741070233201383000-27563897035899999999997089167014048876420
Q gi|254780676|r 164 STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVAS-NYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET 242 (329)
Q Consensus 164 ~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~r-Ly~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt 242 (329)
..+|+.+-. -....+-.+-.|+.+-+|--++|--+ -+..+-.+-.+.+-..-.+.+-+.|.+ ..|...-+==|-.
T Consensus 91 s~~ITtng~---vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~-pvkvn~v~~k~~n 166 (323)
T KOG2876 91 SIGITTNGL---VLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYN-PVKVNCVVMKGLN 166 (323)
T ss_pred HHCEECCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CCCEEEEEEECCC
T ss_conf 415012622---677661787772434000356655577777776311299999887677650778-7412256763367
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHH
Q ss_conf 68899999999966993997502227861007800023846
Q gi|254780676|r 243 RNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQ 283 (329)
Q Consensus 243 ~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~ 283 (329)
.+||.+...--+...+|+.-|- |+.=...-+...+.++-.
T Consensus 167 ~~ei~Dfv~~tr~~p~DVrfIe-~mpf~gn~~~t~slipy~ 206 (323)
T KOG2876 167 EDEVFDFVLLTRMRPLDVRFIE-FMPFDGNKWNTKSLIPYK 206 (323)
T ss_pred CCCCCCEEEECCCCCCCEEEEE-ECCCCCCCCCHHCCCCHH
T ss_conf 8702321330689875468899-425678721110134488
No 289
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.73 E-value=40 Score=15.44 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHCCCHHHHH
Q ss_conf 9999999985335868998154623446-8999874107023320
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTPDFLRKP-HALEKVVSAKPDVFNH 194 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiPDf~G~~-~al~~v~~A~pdV~nH 194 (329)
-.+.|+++|+.. +.-|++=+-|--|.- .+.-.-++||.|++.-
T Consensus 186 a~~LV~alk~~~-~lpI~~HtH~t~G~~~a~~l~A~eAGvdivD~ 229 (580)
T PRK09282 186 AYELVSALKKEV-DLPVHLHCHATTGLATMTYLKAVEAGVDILDT 229 (580)
T ss_pred HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999861-98169982477647999999999848886700
No 290
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=33.65 E-value=40 Score=15.43 Aligned_cols=198 Identities=15% Similarity=0.221 Sum_probs=115.8
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf 5001799866899999999749823652578878767508972699986652235352234467899888823-579999
Q gi|254780676|r 44 IRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQ-EPENIS 122 (329)
Q Consensus 44 lk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~-EP~rvA 122 (329)
.|.-+|...++.... +...--.+|.+.+|--|=--.-.+--.|+--+.|--.||||-=.. -+..-+.. -+.++-
T Consensus 73 rrQviP~~~El~~~~----~~~~Dpl~E~~~s~Vpgl~HrY~drvLll~t~~C~vyCRyCfRr~-~~~~~~~~~~~~~~~ 147 (369)
T COG1509 73 RRQVIPSEDELEKAP----GESEDPLGEDDSSPVPGLTHRYPDRVLLLVTGVCAVYCRYCFRRR-FVGQDNQGFNKEEWD 147 (369)
T ss_pred HHHCCCCHHHHHHCC----CCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCEEEECCCCC-CCCCCCCCCCHHHHH
T ss_conf 762379889975143----324686545566878873110588489996486645210001345-556665667889999
Q ss_pred HHHHH----HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC------CCEEEEECCCCCCCHHHHHHHHHC--CCH
Q ss_conf 99997----077518985054453453258999999999985335------868998154623446899987410--702
Q gi|254780676|r 123 WAVRS----MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP------STTIEVLTPDFLRKPHALEKVVSA--KPD 190 (329)
Q Consensus 123 ~av~~----l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P------~~~IEvLiPDf~G~~~al~~v~~A--~pd 190 (329)
.|..- =.++-|.+|.=|==-|+|.- ...-++++++-.. ++.+=|..|. .-.+.|-..+.+ .+-
T Consensus 148 ~al~YIa~hPeI~eVllSGGDPL~ls~~~---L~~ll~~L~~IpHv~iiRi~TR~pvv~P~--RIt~~L~~~l~~~~~~v 222 (369)
T COG1509 148 KALDYIAAHPEIREVLLSGGDPLSLSDKK---LEWLLKRLRAIPHVKIIRIGTRLPVVLPQ--RITDELCEILGKSRKPV 222 (369)
T ss_pred HHHHHHHCCCHHHEEEECCCCCCCCCHHH---HHHHHHHHHCCCCEEEEEEECCCCEECHH--HHCHHHHHHHHCCCCEE
T ss_conf 99999973951651774078756368899---99999987548964699862467431544--40699999872358607
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 3320138300027563897035899999999997089167014048876420688999999999669939
Q gi|254780676|r 191 VFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF 260 (329)
Q Consensus 191 V~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi 260 (329)
.++-.++....+++.++ ... +..+.+|--+.--|=|+-|.-.+.+-+.+.+.+|..+||-=
T Consensus 223 ~~~tH~NHp~Eit~e~~------~A~---~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~P 283 (369)
T COG1509 223 WLVTHFNHPNEITPEAR------EAC---AKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKP 283 (369)
T ss_pred EEECCCCCHHHCCHHHH------HHH---HHHHHCCCEEECCHHEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99803588354689999------999---99997595653241011466799999999999999748862
No 291
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=33.44 E-value=40 Score=15.41 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC------
Q ss_conf 34467899888823579999999970775189850544534532589999999999853358689981546234------
Q gi|254780676|r 103 CNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR------ 176 (329)
Q Consensus 103 C~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G------ 176 (329)
|+.-.|-|.- +++--.+.|.|+..=|-.-+=+-+ .+-|++||+...---|-+---|+.|
T Consensus 11 CQA~~~ePl~-~~~im~~mA~Aa~~gGA~giR~~~--------------~~dI~aik~~v~lPIIGi~K~~~~~s~VyIT 75 (222)
T PRK01130 11 CQALPGEPLH-SPEIMAAMALAAEQGGAVGIRANG--------------VEDIKAIREVVDVPIIGIIKRDYPDSEVYIT 75 (222)
T ss_pred EECCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCC--------------HHHHHHHHHHCCCCEEEEEECCCCCCCEEEC
T ss_conf 7079989978-879999999999968962997189--------------8899999984799879999546899973751
Q ss_pred -CHHHHHHHHHCCCHHHHH
Q ss_conf -468999874107023320
Q gi|254780676|r 177 -KPHALEKVVSAKPDVFNH 194 (329)
Q Consensus 177 -~~~al~~v~~A~pdV~nH 194 (329)
-.+.++.|++||.|+++-
T Consensus 76 Pt~~ev~~l~~aGadiIA~ 94 (222)
T PRK01130 76 PTLKEVDALAAAGADIIAL 94 (222)
T ss_pred CCHHHHHHHHHCCCCEEEE
T ss_conf 7699999999869999998
No 292
>PRK06091 membrane protein FdrA; Validated
Probab=33.41 E-value=40 Score=15.40 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=109.1
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECC-CCCCCCCCCCCCCCCCCC-CCHHH-
Q ss_conf 824500179986689999999974982365257887876750897269998665-223535223446789988-88235-
Q gi|254780676|r 41 PDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGA-ICTRACTFCNVATGKPQP-LDPQE- 117 (329)
Q Consensus 41 P~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~-~CTR~C~FC~V~~G~P~~-~D~~E- 117 (329)
...||--...|.--.+-.-+++ ..|+..+.... ..+.-+....-||.=||| .+| .|||.| +||.-
T Consensus 330 ~~~irGLysGGTLa~EA~~ll~-~~l~~~~~~~~--~~g~~l~s~gH~iiDlGDD~fT---------~GRPHPMIDPs~R 397 (555)
T PRK06091 330 SGFICGLYTGGTLAAEAAGLLA-GHLGVEADDEH--HHGMMLDADGHQIIDLGDDFYT---------VGRPHPMIDPTLR 397 (555)
T ss_pred CCEEEEEECCCHHHHHHHHHHH-HHHCCCCCCCC--CCCCHHHCCCCEEEECCCCCCC---------CCCCCCCCCHHHH
T ss_conf 7737999537129999999999-87099888533--5441110589569865774235---------7898888682779
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEE------CCCCCCCHHHHHHHHHCCCH
Q ss_conf 79999999970775189850544534532589999999999853358-689981------54623446899987410702
Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS-TTIEVL------TPDFLRKPHALEKVVSAKPD 190 (329)
Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~-~~IEvL------iPDf~G~~~al~~v~~A~pd 190 (329)
-+|+++..+.=...-+.+--|--=--..-=|...+..|+++++...+ -.+.++ --|.|+..++.+++.+||.-
T Consensus 398 ~e~i~~~a~Dp~v~VILlDvVLGyGah~DPag~L~paI~~a~~a~~~gr~l~vVa~V~GT~~DPQ~~~~Q~~~L~~AGv~ 477 (555)
T PRK06091 398 NQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIA 477 (555)
T ss_pred HHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEE
T ss_conf 99999973499722899987532689998489999999999975533896389999807888973899999999968959
Q ss_pred HHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 332013830002756389703-5899999999997089167014048876420688999999999669939975
Q gi|254780676|r 191 VFNHNLETVASNYLMVRPGAR-YFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 191 V~nHNiETV~rLy~~VRp~a~-Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
|+.-|-+.++--..-+||.-. -+..+..|-. +|. =|=+||. .-.++|.+.|+..+-.
T Consensus 478 V~~SNa~A~~~A~~l~~~~~~~~~~~~~~l~~----~~~-----vIn~Gl~-------sfa~~~~~~g~~vvq~ 535 (555)
T PRK06091 478 VVSSLPEATLLAAALIRPLLSATQQHTPSLLE----NVA-----VINIGLR-------SFALDLQSAGKPVVHY 535 (555)
T ss_pred EECCCHHHHHHHHHHHCCCCCCCHHHHHHHHC----CCE-----EEECCHH-------HHHHHHHHCCCCEEEE
T ss_conf 97573999999999708877776044577615----971-----9981557-------7899999829976853
No 293
>KOG4746 consensus
Probab=33.06 E-value=41 Score=15.36 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 8999999997498236
Q gi|254780676|r 54 YKETYNILRSRNLTTV 69 (329)
Q Consensus 54 ~~~~~~~l~~~~L~TV 69 (329)
|..-+.+.+..++-|+
T Consensus 34 F~df~~~fr~m~m~~i 49 (423)
T KOG4746 34 FEDFKRLFRNMGMVTI 49 (423)
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 3999999986485021
No 294
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.04 E-value=41 Score=15.36 Aligned_cols=111 Identities=22% Similarity=0.352 Sum_probs=67.0
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCC
Q ss_conf 970775189850544534532589999999999853358-68998154623446899987410702332-0138300027
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS-TTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNY 203 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~-~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy 203 (329)
.+|||.-.|+--=+. +.-.|. +.+.|+.+|+..|. ..|||-+- +.+.+...+++++|++= -|
T Consensus 158 HR~gLsd~iLIkdNH--i~~~g~--i~~ai~~~r~~~~~~~~IeVEv~----~l~q~~~a~~~g~DiI~LDn-------- 221 (285)
T PRK07428 158 HRMGLDDAVMIKDNH--IQAAGG--IGEAITRIRQQIPYPLTIEVETE----TLEQVQEALEYGADIIMLDN-------- 221 (285)
T ss_pred CCCCCCCCEEEEHHH--HHHCCC--HHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHCCCCEEEECC--------
T ss_conf 479997505677747--520289--99999999974899826999969----89999999966999999879--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 563897035899999999997089167-0140488764206889999999996699399750222
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
-+.+.-=+.++..++.++++. --||.+ + .+.+.+....|||++..|-.-
T Consensus 222 ------m~~~~~~~~v~~l~~~~~~v~iEaSGgI-----n----~~ni~~yA~tGVD~Is~galt 271 (285)
T PRK07428 222 ------MPVDQMQQAVQLIRQQNPRVKIEASGNI-----T----LETIRAVAETGVDYISTSAPI 271 (285)
T ss_pred ------CCHHHHHHHHHHHHHHCCCEEEEEECCC-----C----HHHHHHHHHCCCCEEECCHHH
T ss_conf ------9999999999998730898899998999-----9----999999997499999838310
No 295
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.02 E-value=41 Score=15.36 Aligned_cols=171 Identities=17% Similarity=0.235 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|+++-..++++...-|++.+=||--+ ....+.|+++++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEITlrt---------~~a~~~I~~l~~~~p~~~vGaGTV---l~~e~~~~a~~aGA~F 90 (212)
T PRK06015 23 IDDVEHAVPLARALARGGLPAIEITLRT---------PAALDAIRAVAAEVEEAIVGAGTI---LNAKQFEDAAKAGSRF 90 (212)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC---------CCHHHHHHHHHHHCCCCEEEEEEC---CCHHHHHHHHHCCCCE
T ss_conf 7999999999999998799889996899---------519999999998699967954211---5699999999849989
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|+- +.++++++++.+--.. -|.| |.-|+..++ +.|++++-+ |
T Consensus 91 i-------------VSP~~----~~~v~~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vKlFPA~~~gG 142 (212)
T PRK06015 91 I-------------VSPGT----TQELLAAANDSDVPLL--PGAI-----TPSEVMALR----EEGYTVLKFFPAEQAGG 142 (212)
T ss_pred E-------------ECCCC----CHHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCCCCCC
T ss_conf 9-------------85899----9999999998399773--7869-----999999999----87999899784300168
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -222786100780002-----3846999999999974962434048300103189999999999854
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~ 325 (329)
+|++-=+.-+|=.+| |+++.+.+|=+. -+...|..+-|+.-++-+...|..+...-++
T Consensus 143 ~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~---~~v~~vgGs~l~~~~~i~~~dw~~I~~~a~e 206 (212)
T PRK06015 143 AAFLKALSSPLAGTFFCPTGGISLKNARDYLSL---PNVVCVGGSWVAPKELVAAGDWAAITKLAAE 206 (212)
T ss_pred HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCC---CCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf 999999857799998886289898889999808---9819998835389999971899999999999
No 296
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=32.94 E-value=41 Score=15.35 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=7.5
Q ss_pred CCCHHHCCCCC
Q ss_conf 98824500179
Q gi|254780676|r 39 QKPDWIRVRAP 49 (329)
Q Consensus 39 ~kP~Wlk~~~p 49 (329)
.+|.+..+|+-
T Consensus 24 p~~~eVlvkV~ 34 (358)
T TIGR03451 24 PGPGEVIVDIQ 34 (358)
T ss_pred CCCCEEEEEEE
T ss_conf 99898999999
No 297
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent; InterPro: IPR004434 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and belog to this group. The NADP-dependent IDH of Thermus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus. ; GO: 0004449 isocitrate dehydrogenase (NAD+) activity, 0006099 tricarboxylic acid cycle, 0005739 mitochondrion.
Probab=32.88 E-value=27 Score=16.68 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHCCC--EEEEECCCCCC---CCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCH
Q ss_conf 579999999970775--18985054453---4532589999999999853-35868998154623446899987410702
Q gi|254780676|r 117 EPENISWAVRSMKLS--HVVITSVDRDD---LDDGGAQHFAEVISAIRES-APSTTIEVLTPDFLRKPHALEKVVSAKPD 190 (329)
Q Consensus 117 EP~rvA~av~~l~Lk--~vViTSV~RDD---L~DgGA~hfa~~I~~Ir~~-~P~~~IEvLiPDf~G~~~al~~v~~A~pd 190 (329)
--+|||+-+.....+ =-.+|.|--=. |.|| .|.+++++|-+. .|+++.|-+|=| .-+++.| ++|+
T Consensus 154 ~seRIA~yAFeyA~~~gRK~VTaVHKANIMKL~DG---LFl~~~~eVa~~eYP~I~~~~~IvD----N~cMq~V--s~P~ 224 (348)
T TIGR00175 154 KSERIARYAFEYARKNGRKKVTAVHKANIMKLADG---LFLEVCREVAKKEYPDITFEEMIVD----NTCMQLV--SRPE 224 (348)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH---HHHHHHHHHHHHCCCCCCCCCEEEE----EHHHCCC--CCCC
T ss_conf 57889999999999748964899825101111004---7899888755530788761203423----0000146--7850
Q ss_pred HHHHCCCCCCCCCCCC
Q ss_conf 3320138300027563
Q gi|254780676|r 191 VFNHNLETVASNYLMV 206 (329)
Q Consensus 191 V~nHNiETV~rLy~~V 206 (329)
=|---+=--|.||..|
T Consensus 225 QFDdaVmVmPNLYG~I 240 (348)
T TIGR00175 225 QFDDAVMVMPNLYGNI 240 (348)
T ss_pred CCCCCEEECCCCCCHH
T ss_conf 1077400177765028
No 298
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.78 E-value=41 Score=15.33 Aligned_cols=182 Identities=10% Similarity=0.113 Sum_probs=97.0
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
..+.|...-|-|.-.|=. .. ....|...|+.-...|.++..|.-.+. -. .|.....+.|++|.+.+ .+.
T Consensus 8 Paidl~dg~~Vr~~~f~~-----~~--~~gdP~~~ak~f~~~GadelhivDld~--a~-~g~~~n~~~I~~I~~~~-~ip 76 (253)
T PRK01033 8 PCLLLKDGGLVKTVKFKD-----PK--YVGDPINAVRIFNEKEADELIVLDIDA--SR-KGREPNYELIENLASEC-FMP 76 (253)
T ss_pred EEEEEECCEEEECCCCCC-----CE--ECCCHHHHHHHHHHCCCCEEEEEECCC--CC-CCCCCHHHHHHHHHHHC-CCC
T ss_conf 999999996997855776-----74--888999999999987999899994745--42-48801699999999876-998
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCE-----EEECCC------
Q ss_conf 9981546234468999874107023320138300027563897035899999999-9970891-----670140------
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR-VKELDPL-----IFTKSG------ 234 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~~~-----i~TKSG------ 234 (329)
|.+ -.=-.+.+.++.++++|.|.+.=| ++-++.. ++++. ++.+|+. +-.|.|
T Consensus 77 i~v--GGGIrs~e~~~~ll~~GadkViig-------------s~a~~~p-~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~ 140 (253)
T PRK01033 77 LCY--GGGIKTVEQAKRIFSLGVEKVSIS-------------TAALEDP-KLITEAAEIYGSQSVVVSIDVKKRLFGRYD 140 (253)
T ss_pred EEE--ECCCCCHHHHHHHHHCCCCEEEEC-------------CHHHHCC-HHHHHHHHHCCCCCEEEEEEEECCCCCCEE
T ss_conf 898--688121688899986798669999-------------8786374-165789987799769999998248778347
Q ss_pred EEEEEE--ECHHHHHHHHHHHHHCCCCEEECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 488764--20688999999999669939975022278-61007800023846999999999974962434048
Q gi|254780676|r 235 IMLGLG--ETRNEILQLMDDLRTADVDFLTMGQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 235 lMvGLG--Et~eEi~e~l~DLr~~gvdilTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
++..=| .|.-++.+.+..+.+.|+.-+-+..--+- +..-+ .|+-+++++......-++||=
T Consensus 141 v~~~g~~~~t~~~~~~~~~~~~~~g~geil~TdI~rDGt~~G~---------d~~l~~~i~~~~~ipiIasGG 204 (253)
T PRK01033 141 VYTHNGTKKTGLDPVEFAKQAEELGAGEIVLNSIDRDGVMKGY---------DLELIKKISSAVKIPVTALGG 204 (253)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---------CHHHHHHHHHHCCCCEEEECC
T ss_conf 8986795367855899999987469779999878488976687---------999999999878999999789
No 299
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=32.73 E-value=41 Score=15.33 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850-------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..||||. -+|+||-..-|..+.+.+.+|.+.+|+..+=+.+
T Consensus 73 daDvVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i~ivvt 122 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99999989999899999878999878999999887764248853999936
No 300
>pfam09630 DUF2024 Domain of unknown function (DUF2024). This protein of 86 residues is expressed in bacteria. It consists of four alpha helices and two beta strands. Its function is unknown. One UniProt entry gives the gene name as Traf5.
Probab=32.69 E-value=31 Score=16.17 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 522353522344678998888235799999999707
Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMK 129 (329)
Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~ 129 (329)
++-++.|+||...... ..|.++|++=|
T Consensus 49 ~vt~~~C~FCHsE~A~---------~~V~~~I~~~G 75 (81)
T pfam09630 49 DITQKECRFCHSEKAP---------EEVEEAIKENG 75 (81)
T ss_pred CCCCCCCCCCCCCCCC---------HHHHHHHHHCC
T ss_conf 6401206554576699---------89999998598
No 301
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=32.47 E-value=42 Score=15.30 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCEEEEEEEC----HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 14048876420----6889999999996699399750222786100780002384699999999997496
Q gi|254780676|r 232 KSGIMLGLGET----RNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGF 297 (329)
Q Consensus 232 KSGlMvGLGEt----~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf 297 (329)
|-=+++==|++ ++.+.+.+.+||..||.|++||= -.+. . +++.++|-+-..
T Consensus 111 kvlvliTDG~S~~~~~~~~~~aa~~lr~~GV~ifaVGV-----------G~~~-~---~eL~~IAs~p~~ 165 (186)
T cd01480 111 KFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAV-----------GSQN-E---EPLSRIACDGKS 165 (186)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-----------CCCC-H---HHHHHHHCCCCC
T ss_conf 38999845876667406699999999987989999994-----------7488-7---999998589973
No 302
>PRK08782 consensus
Probab=32.36 E-value=42 Score=15.29 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|.++-..+++|+..-|++.+=||--+ ....+.|+.+++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 25 ~~~~~~a~~~~eal~~gGi~~iEiTlrt---------~~a~~~i~~l~~~~p~~~vGaGTV---~~~e~~~~a~~aGA~F 92 (219)
T PRK08782 25 VDTLDQARRVADALLEGGLPAIELTLRT---------PVAIEALAMLKRELPNIVIGAGTV---LSERQLRQSVDAGADF 92 (219)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHHCCCCEEEEEEE---CCHHHHHHHHHCCCCE
T ss_conf 5999999999999998799879996799---------339999999998689947999970---5899999999849989
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|+. +.++++++++.+.... -|.| |.-|+..+ .+.|++++-+ |
T Consensus 93 i-------------VSP~~----~~~v~~~a~~~~i~~i--PGv~-----TpSEi~~A----~~~G~~~vKlFPA~~~Gg 144 (219)
T PRK08782 93 L-------------VTPGT----PAPLARLLADAPIPAV--PGAA-----TPTELLTL----MGLGFRVCKLFPATAVGG 144 (219)
T ss_pred E-------------ECCCC----CHHHHHHHHHCCCCEE--CCCC-----CHHHHHHH----HHCCCCEEEECCCHHCCC
T ss_conf 9-------------87899----7999999998199764--7859-----99999999----987999899777322084
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -222786100780002-----3846999999999974962434048300103189999999999854
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~ 325 (329)
.||+-=..-+|=.+| ++++.+.+|- ..-+...|..+-|+..++-+...|..+.++-++
T Consensus 145 ~~~lkal~~pfp~~~f~pTGGV~~~N~~~yl---~~~~v~~vgGS~l~~~~li~~~dw~~I~~~a~~ 208 (219)
T PRK08782 145 LQMLKGLAGPLSELKLCPTGGISETNAAEFL---SQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAK 208 (219)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHH---HCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf 9999998476999818767998987899998---079939998825389999861999999999999
No 303
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase; InterPro: IPR005993 Guanosine monophosphate reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences. ; GO: 0003920 GMP reductase activity, 0009117 nucleotide metabolic process.
Probab=32.19 E-value=42 Score=15.27 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=130.7
Q ss_pred CCHHHCCCCCCCCCCCCHHHCCCCCC----CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 68242148888888988245001799----86689999999974982365257887876750897269998665223535
Q gi|254780676|r 25 RHPEKIHKPDTEKMQKPDWIRVRAPV----SSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRAC 100 (329)
Q Consensus 25 r~p~k~~~p~~~~~~kP~Wlk~~~p~----~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C 100 (329)
|..+.+.+...=+.-+-.|--+++-. .-...++...+.++.+-|.-..---=+-..-|.... .--+|-+
T Consensus 25 r~~v~l~r~~~f~~s~~~~~G~P~~~~nmdtvGtf~ma~~l~~~~~~t~~hkhys~~~W~~f~~~~-~~~~l~~------ 97 (343)
T TIGR01305 25 RADVELEREFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALASHKILTAIHKHYSVDEWKAFAASA-SPDVLKN------ 97 (343)
T ss_pred CCCCEECCEEEEECCCCEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC-CHHHHHH------
T ss_conf 110000100233114660035426763354210578999875225664666530368899987213-3457654------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE---ECCCCCC
Q ss_conf 2234467899888823579999999970-77518985054453453258999999999985335868998---1546234
Q gi|254780676|r 101 TFCNVATGKPQPLDPQEPENISWAVRSM-KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEV---LTPDFLR 176 (329)
Q Consensus 101 ~FC~V~~G~P~~~D~~EP~rvA~av~~l-~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv---LiPDf~G 176 (329)
-.|.+|... -|.. ++..-+... .|+|+-| |...|=+.||.+-|+.+|+..|.-+|-. .+
T Consensus 98 --~~~s~G~~~-~d~~---k~~~~~~~~P~~~~~C~------dvanGyse~fv~f~~~~r~~~P~~ti~aGnvvt----- 160 (343)
T TIGR01305 98 --VAVSSGSSD-NDLE---KLKSILEEVPQLKFICL------DVANGYSEHFVEFVKKVREAYPKKTIMAGNVVT----- 160 (343)
T ss_pred --HHHHCCCCH-HHHH---HHHHHHHHCCCCEEEEE------EECCCCHHHHHHHHHHHHHHCCCCEEEECCCEE-----
T ss_conf --333058854-4689---99999972677037998------603562178999999999736533043134100-----
Q ss_pred CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE--ECHHHHHHHHHHHH
Q ss_conf 4689998741070233201383000275638970358999999999970891670140488764--20688999999999
Q gi|254780676|r 177 KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG--ETRNEILQLMDDLR 254 (329)
Q Consensus 177 ~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG--Et~eEi~e~l~DLr 254 (329)
.+.++.++-+|.|++.--|------+-+...+-.|-+--.+|+-+-.+. .+ .|.++-=| -+.-+|...+
T Consensus 161 -Gem~eelilsGadi~kvG~GPGsvCttr~k~GvGyPqlsav~eCad~ah-Gl---~G~~~sdGGC~~PGdvakaf---- 231 (343)
T TIGR01305 161 -GEMVEELILSGADIVKVGIGPGSVCTTRKKTGVGYPQLSAVIECADAAH-GL---KGHIVSDGGCTTPGDVAKAF---- 231 (343)
T ss_pred -HHHHHHHHHCCCCEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHCC-CC---CCEEEECCCCCCCHHHHHHH----
T ss_conf -4677877734763799635887501122004567513667654321015-75---52487268889812678877----
Q ss_pred HCCCCEEECCHHCCC
Q ss_conf 669939975022278
Q gi|254780676|r 255 TADVDFLTMGQYLQP 269 (329)
Q Consensus 255 ~~gvdilTiGQYL~P 269 (329)
..|.|++-||-.+.-
T Consensus 232 ~~gadfvm~GG~~~G 246 (343)
T TIGR01305 232 GAGADFVMLGGLLAG 246 (343)
T ss_pred HCCCCEEEECCCCCC
T ss_conf 347776765220115
No 304
>pfam01373 Glyco_hydro_14 Glycosyl hydrolase family 14. This family are beta amylases.
Probab=32.01 E-value=42 Score=15.25 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 467899888823579999999970775189850
Q gi|254780676|r 105 VATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137 (329)
Q Consensus 105 V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTS 137 (329)
|....|...|..-=.++++.|++.|||-.||.|
T Consensus 39 VE~~~p~~YdWsgY~~l~~mv~~~gLKl~~vmS 71 (399)
T pfam01373 39 VEKAGDNQFDWSYYKTYAQTVKKAGLKWVPIIS 71 (399)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 526789826848999999999985994889987
No 305
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=31.73 E-value=43 Score=15.22 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHCCC-EEEEECCCCCCC------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 999970775-189850544534------53258999999999985335868998154623446899987410
Q gi|254780676|r 123 WAVRSMKLS-HVVITSVDRDDL------DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA 187 (329)
Q Consensus 123 ~av~~l~Lk-~vViTSV~RDDL------~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A 187 (329)
+++..||.. ..|+|+++=-|- .+--+..+.+-++++-+- ..+.+.--.|.|+.+.++.|.+.
T Consensus 21 ~t~~alg~~~~~v~Talt~Q~~~~v~~~~~v~~~~i~~Ql~al~~d---~~~~~iKiG~l~s~~~i~~v~~~ 89 (242)
T cd01169 21 KTFAALGVYGMSVITALTAQNTLGVFGVHPVPPEFVAAQLDAVLED---IPVDAIKIGMLGSAEIIEAVAEA 89 (242)
T ss_pred HHHHHCCCEECEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHH
T ss_conf 9999859915204469999857242588968999999999999717---89888999996989999999999
No 306
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=31.60 E-value=43 Score=15.20 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=33.8
Q ss_pred CCCEEEEECC------------CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7751898505------------44534532589999999999853358689981
Q gi|254780676|r 129 KLSHVVITSV------------DRDDLDDGGAQHFAEVISAIRESAPSTTIEVL 170 (329)
Q Consensus 129 ~Lk~vViTSV------------~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvL 170 (329)
+-+.||||.= +|+||-..-|..+.+.+..|.+.+|+..+=+.
T Consensus 75 ~aDiVVitAG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~aiiivv 128 (322)
T PTZ00082 75 GSDVVIVTAGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNAFVIVI 128 (322)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999999898887789998765678899998899999999998740998359974
No 307
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=31.56 E-value=43 Score=15.20 Aligned_cols=96 Identities=23% Similarity=0.344 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH---HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999985335868998154623446899987410702332---0138300027563897035899999999997089
Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN---HNLETVASNYLMVRPGARYFHSLRLLQRVKELDP 227 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n---HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~ 227 (329)
..+-+..-++..-++.|||- +.+.+++.+++++++++ -|+.|- .-+..++.+++....+ +-
T Consensus 149 l~~l~~~a~~lgl~~LvEvh------~~~El~~a~~~~a~iIGINnRnL~t~---------~vd~~~~~~L~~~ip~-~~ 212 (261)
T PRK00278 149 LKELLDLAHELGLDVLVEVH------DEEELERALKLGAPLIGINNRNLKTF---------EVDLDTTERLAPLIPK-DR 212 (261)
T ss_pred HHHHHHHHHHHCCEEEEEEC------CHHHHHHHHHCCCCEEEEECCCCHHC---------EECHHHHHHHHHHCCC-CC
T ss_conf 99999999982990797768------99999999847998898746771120---------0378999999964899-98
Q ss_pred EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC
Q ss_conf 16701404887642068899999999966993997502227861
Q gi|254780676|r 228 LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR 271 (329)
Q Consensus 228 ~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~ 271 (329)
-+..-|||- |.++ +..|+++|+|-+-||..|--+.
T Consensus 213 ~~VsESGI~-----~~~d----~~~l~~~G~davLIGeslm~~~ 247 (261)
T PRK00278 213 LLVSESGIF-----TPED----LKRLAKAGADAFLVGESLMRAD 247 (261)
T ss_pred EEEECCCCC-----CHHH----HHHHHHCCCCEEEECHHHHCCC
T ss_conf 899799999-----9999----9999977999999897876799
No 308
>pfam06263 consensus
Probab=31.55 E-value=43 Score=15.20 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=76.8
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCC---CCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCHHH-
Q ss_conf 450017998668999999997498236525788---7876750897269998665223535223446789988-88235-
Q gi|254780676|r 43 WIRVRAPVSSGYKETYNILRSRNLTTVCEEAGC---PNIGECWNKNHATFMILGAICTRACTFCNVATGKPQP-LDPQE- 117 (329)
Q Consensus 43 Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~C---PNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~-~D~~E- 117 (329)
.||--...|.--.+-.-++++ .|.-++....- ..+..-|....-||.=|||-- ...|||.| +||.-
T Consensus 340 ~irGLysGGTLa~EA~~l~~~-~l~~~~sn~~~~g~~~L~d~~~s~gH~iiDlGDD~--------fT~GRPHPMIDPs~R 410 (514)
T pfam06263 340 YIRGLYSGGTLADEAAMLLSE-ALGDVYSNIPLEGEMLLANIDKSQGHTIIDLGDDM--------FTVGRPHPMIDPTLR 410 (514)
T ss_pred EEEEEECCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHCCCCCCCCCCCEEEECCCCC--------CCCCCCCCCCCHHHH
T ss_conf 489995471599999999998-60876678888730025763335895688667743--------457899788684789
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC--CEEEE------ECCCCCCCHHHHHHHHHCCC
Q ss_conf 79999999970775189850544534532589999999999853358--68998------15462344689998741070
Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS--TTIEV------LTPDFLRKPHALEKVVSAKP 189 (329)
Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~--~~IEv------LiPDf~G~~~al~~v~~A~p 189 (329)
-+|+++..+.=...-+.+--|--=--..-=|...+..|++.|+..+. -.+.+ ---|.|+..++.+++.+||.
T Consensus 411 ~e~i~~~a~Dp~v~VILlDvVLGyGah~DPag~L~paI~~a~~~a~~~gr~l~vvatV~GT~~DPQ~~~~Q~~~L~~AGv 490 (514)
T pfam06263 411 NERILQEAADPEVAVILLDVVLGYGAHADPAGELLPAIEEARAIAKADGRELAVIATVCGTEADPQGRSEQIKILEEAGV 490 (514)
T ss_pred HHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCE
T ss_conf 99999971499722899985322689998489999999999988875389708999973889897489999999997895
Q ss_pred HHHHHCCCCCCC
Q ss_conf 233201383000
Q gi|254780676|r 190 DVFNHNLETVAS 201 (329)
Q Consensus 190 dV~nHNiETV~r 201 (329)
-|+.-|-+.++-
T Consensus 491 ~V~~SNa~A~~~ 502 (514)
T pfam06263 491 LVVSSNAQAVRL 502 (514)
T ss_pred EEECCCHHHHHH
T ss_conf 997585999999
No 309
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.34 E-value=43 Score=15.17 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|+++-..++++...-|++.+=||--+ | ...+.|+.+++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 23 ~~~~~~a~~i~~al~~gGi~~iEiTl~t----p-----~a~~~I~~l~~~~p~~~vGaGTV---~~~e~~~~a~~aGA~F 90 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRT----P-----AALEAIRAIRKEVPEALIGAGTV---LNPEQLAQAIEAGAQF 90 (212)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC----C-----HHHHHHHHHHHHCCCCEEEEEEE---CCHHHHHHHHHCCCCE
T ss_conf 4899999999999998799789995789----6-----19999999997589817965331---3488999999849989
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|.-+ .++++.+++.+.... -|.| |..|+..++ +.|++++-+ |
T Consensus 91 i-------------VSP~~~----~~v~~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vK~FPA~~~gG 142 (212)
T PRK05718 91 I-------------VSPGLT----PPLLKACQDGPIPLI--PGVN-----TPSELMLAM----ELGLRTFKFFPAEASGG 142 (212)
T ss_pred E-------------ECCCCC----HHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCCCCCC
T ss_conf 9-------------848998----999999998199765--7869-----999999999----87999899787610179
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -222786100780002-----38469999999999749624340483001031899999999998541
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQH 326 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~ 326 (329)
.||+-=+.-+|=.+| |+++-+.+|-. .-|...|-.+-|+.-.+-+...|..+.++.++-
T Consensus 143 ~~~lkal~~p~p~i~~~ptGGV~~~N~~~yl~---~~~v~avgGS~l~~~~~v~~~d~~~I~~~a~~~ 207 (212)
T PRK05718 143 VKMLKALAGPFSDVRFCPTGGISPANYRDYLA---LPNVLCIGGSWMVPKDAIENGDWDRITRLAREA 207 (212)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC---CCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 99999985658998288659989878999981---788699987352899998648999999999999
No 310
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=31.33 E-value=43 Score=15.17 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC-CC-CCCCCCCCCCCCH
Q ss_conf 999999999970891670140488764206889999999996699399750222-78-6100780002384
Q gi|254780676|r 214 HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL-QP-TRKHHKVESFVTP 282 (329)
Q Consensus 214 rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL-~P-s~~h~pV~ryv~P 282 (329)
---+...++|+.| . |+=+|--=--+.+||.++ +|||.|||..-| +- ...+-++.+-..|
T Consensus 203 ~v~~Iy~yyk~~g--~--~T~Vm~ASfRn~~ei~~L------aGcD~lTisP~LL~~L~~~~~~~~~~l~~ 263 (313)
T cd00957 203 SVKKIYNYYKKFG--Y--KTKVMGASFRNIGQILAL------AGCDYLTISPALLEELKNSTAKVERKLDP 263 (313)
T ss_pred HHHHHHHHHHHCC--C--CEEEEEEECCCHHHHHHH------HCCCEEECCHHHHHHHHCCCCCHHHHCCH
T ss_conf 9999999999769--9--707853102779999987------37882413999999987176731011482
No 311
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=31.31 E-value=43 Score=15.17 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=56.2
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-CCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1898505445345325899999999998533586899815462344689998741-070233201383000275638970
Q gi|254780676|r 132 HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS-AKPDVFNHNLETVASNYLMVRPGA 210 (329)
Q Consensus 132 ~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~-A~pdV~nHNiETV~rLy~~VRp~a 210 (329)
+++--..-+|-|+-. =.++|+.+|++ ++.+..|+-| |..+.+.+.. -|-+|+++ |.|..
T Consensus 361 ~l~~~~~~~D~lkp~----a~~~i~~Lk~~--Gi~~~mLtGD---N~~~A~a~A~~lGI~v~Ae-----------v~P~~ 420 (545)
T TIGR01511 361 ELAGVLALADQLKPE----AKEVIQALKRR--GIEPVMLTGD---NRKTAKAVAKELGINVRAE-----------VLPDD 420 (545)
T ss_pred CEEEEEEECCCCCHH----HHHHHHHHHHC--CCEEEEEECC---CHHHHHHHHHHHCCEEEEC-----------CCHHH
T ss_conf 279988664746886----89999999875--9879998669---8799999999728333317-----------88076
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHH
Q ss_conf 35899999999997089167014048876420688
Q gi|254780676|r 211 RYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNE 245 (329)
Q Consensus 211 ~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eE 245 (329)
.++. .+..++ +.. +|||=|=.|.=
T Consensus 421 K~a~----ik~lq~---~~V----aMVGDGiNDAP 444 (545)
T TIGR01511 421 KAAL----IKELQE---KVV----AMVGDGINDAP 444 (545)
T ss_pred HHHH----HHHHHC---CEE----EEEECCCCCHH
T ss_conf 8999----999853---837----88818867658
No 312
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=31.24 E-value=43 Score=15.16 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999997077518985
Q gi|254780676|r 119 ENISWAVRSMKLSHVVIT 136 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViT 136 (329)
.|+..++++||++-|.|-
T Consensus 15 ~RiiRt~~elgi~tVavy 32 (449)
T PRK08591 15 LRILRACKELGIKTVAVH 32 (449)
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999998499499986
No 313
>PRK13120 consensus
Probab=31.10 E-value=44 Score=15.15 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 999999999970891670140488764206889999999996699399750
Q gi|254780676|r 214 HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 214 rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
.-.+.++++|+ .|+-=+.+|.|=+..|-++.+.. .+|-+-||
T Consensus 196 ~l~~~i~~ik~-----~t~~Pv~vGFGIs~~e~v~~~~~----~ADGvIVG 237 (285)
T PRK13120 196 DVARKLALIRR-----HVHIPVGVGFGIRDAASAQRIAA----HADAVVIG 237 (285)
T ss_pred HHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHC----CCCEEEEC
T ss_conf 89999999997-----26997599962598999999970----29999987
No 314
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=30.92 E-value=44 Score=15.13 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=91.3
Q ss_pred ECCCCCCCCCCCCCCCCCC-----C--CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-C
Q ss_conf 6652235352234467899-----8--888235799999999707751898505445345325899999999998533-5
Q gi|254780676|r 92 LGAICTRACTFCNVATGKP-----Q--PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESA-P 163 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~P-----~--~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~-P 163 (329)
...-|--+|.+|-+..+.. . ....+.-.++++-+..-.-..+.|+=--=.=|. -+-..|.+.++.+++.+ .
T Consensus 11 ~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~~~~i~f~GGEPLL-~~~~~~~~~~~~~~~~~~~ 89 (370)
T PRK13758 11 ASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTL-AGLEFFEELMELQRKHNYK 89 (370)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 878848899766883768866666645482999999999998636895389997722206-9836999999999985568
Q ss_pred CCEEE--EECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCEEEECCCEEE
Q ss_conf 86899--815462344689998741070233201383000275638----970358999999999970891670140488
Q gi|254780676|r 164 STTIE--VLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVR----PGARYFHSLRLLQRVKELDPLIFTKSGIML 237 (329)
Q Consensus 164 ~~~IE--vLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR----p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMv 237 (329)
+..|. +.|-...=+.+.++.+.+-+-. +.=-|.=.+.+.-..| -..+|++-+.-++..++.+..+ +-+++
T Consensus 90 ~~~i~~~i~TNGtLL~~e~~~~l~~~~~~-I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~~~~~~---~i~~~ 165 (370)
T PRK13758 90 NLKIYNSLQTNGTLIDESWAKFLSENKFL-VGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEF---NILCV 165 (370)
T ss_pred CCEEEEEEEECCEECCHHHHHHHHHCCEE-EEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE---EEEEE
T ss_conf 97699998518876689999999976948-999646888887400688899705999999999999739970---08999
Q ss_pred EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 764206889999999996699399750222786100780-0023846999999999
Q gi|254780676|r 238 GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV-ESFVTPQDFKSYETIA 292 (329)
Q Consensus 238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV-~ryv~P~eF~~~~~~a 292 (329)
=--++.+.+.+..+.+.+.|+..+.+--.+-|...-... ..-..|++|..+-...
T Consensus 166 i~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 221 (370)
T PRK13758 166 VTSNTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNL 221 (370)
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 91873118999999999769985888842256556677678757999999999999
No 315
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=30.81 E-value=44 Score=15.11 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=114.6
Q ss_pred CCCCEEEEEECCCCCCCC--CCCCC---CCCCCCCCCHHHHHHHHHHHHH------------HCCCEEEEECCCCCCCCC
Q ss_conf 897269998665223535--22344---6789988882357999999997------------077518985054453453
Q gi|254780676|r 83 NKNHATFMILGAICTRAC--TFCNV---ATGKPQPLDPQEPENISWAVRS------------MKLSHVVITSVDRDDLDD 145 (329)
Q Consensus 83 ~~gtATFMilG~~CTR~C--~FC~V---~~G~P~~~D~~EP~rvA~av~~------------l~Lk~vViTSV~RDDL~D 145 (329)
+.|--.|-|.|+.+-=+- +|-+- .---...+|..|+....+.++. |++..+.|-+..
T Consensus 5 G~G~~~~~iGGE~VLyRHektf~npt~ia~dv~D~m~~~ei~a~~~~i~~v~~~~~~rVG~~l~~D~iav~~~s------ 78 (384)
T pfam03599 5 GAGEKAVVIGGEEVLYRFELPFPNPTAITIDVFDNLSPELLKARRERIEDVMFDPKKRVGEKLTLDMIAIRLIS------ 78 (384)
T ss_pred CCCCEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECC------
T ss_conf 67963699878368874662567998269995388776779999999875213222222122023389999078------
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 25899999999998533586899815462344689998741070233201383000275638970358999999999970
Q gi|254780676|r 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL 225 (329)
Q Consensus 146 gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~ 225 (329)
+.+.-|+++++.|.+... .-+=+..-|-.--+.+|+.+.+.+|=+++-|. .+|+ ++.+-|++.
T Consensus 79 ~dp~~fa~~vk~V~~~~~-~pliL~~~dp~vl~aale~~~~~rPLlyaAt~-------------~N~~---~m~~lA~~~ 141 (384)
T pfam03599 79 TDPKEFAKAVEKVLQAVD-VPLVIGGSDPEVLKAALEVAEDERPLLYAATL-------------DNYK---EIAELALEY 141 (384)
T ss_pred CCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHCCCCCEEEECCH-------------HHHH---HHHHHHHHC
T ss_conf 999999999999996469-98899808999999999974658977854899-------------8999---999999974
Q ss_pred CCEEEECCCEEEEEEE-CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCEE
Q ss_conf 8916701404887642-06889999999996699399750222786100780002384699999999997----496243
Q gi|254780676|r 226 DPLIFTKSGIMLGLGE-TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS----KGFLMV 300 (329)
Q Consensus 226 ~~~i~TKSGlMvGLGE-t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~----~Gf~~V 300 (329)
+--+.. .+. .-+++.++-..|.++|++-|-| -|+.....=.=..+-+.|...+..|++ +||. +
T Consensus 142 ~~Pv~v-------~a~~dl~~l~~L~~~l~~~GikdlVL----DPgT~~~g~~l~~t~~n~~~IRRaAlkgdr~lgyP-i 209 (384)
T pfam03599 142 KHPVLL-------WSINDLNELKNLNRKLLKAGVKDIVL----DPTTEALGYGIKDTIDNFVRIRRAAIKGDKDLGFP-I 209 (384)
T ss_pred CCCEEE-------ECCCCHHHHHHHHHHHHHCCCCCEEE----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-E
T ss_conf 982899-------74888999999999999769854898----89886667468999999999999986579778885-5
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 40483001031899999999998
Q gi|254780676|r 301 SASPLTRSSYHAGDDFLRLKNNR 323 (329)
Q Consensus 301 ~SgPlVRSSY~A~e~~~~~~~~~ 323 (329)
.++|. .++.+.+........|
T Consensus 210 ~~~~~--~a~~~~~~~~~~~~~k 230 (384)
T pfam03599 210 SSGTT--NAWGARESWMVNLMNR 230 (384)
T ss_pred EECCC--CCCHHHHHHHHHHHHH
T ss_conf 51456--6640368899999987
No 316
>PRK13115 consensus
Probab=30.63 E-value=44 Score=15.09 Aligned_cols=34 Identities=18% Similarity=0.014 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH
Q ss_conf 8235799999999707751898505445345325
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG 147 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG 147 (329)
|.+.-.++..+...-|...+=|--.--|-+.||-
T Consensus 36 ~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGP 69 (269)
T PRK13115 36 DVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGP 69 (269)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH
T ss_conf 9899999999999669999997999888566689
No 317
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=30.41 E-value=39 Score=15.52 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHCCCE--EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 88235799999999707751--8985054453453258999999999985335868998154
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSH--VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTP 172 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~--vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiP 172 (329)
....|-+|||+-..++..+. --+|||+....-......|-++++++.+..|++.++-+.=
T Consensus 153 ~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~V 214 (348)
T COG0473 153 ITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYV 214 (348)
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 00888999999999999960799468986001056536789999999861189861446748
No 318
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.41 E-value=45 Score=15.07 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=64.2
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCCCHHHH---HCCCCCCC
Q ss_conf 9707751898505445345325899999999998533-5868998154623446899987410702332---01383000
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESA-PSTTIEVLTPDFLRKPHALEKVVSAKPDVFN---HNLETVAS 201 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~-P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n---HNiETV~r 201 (329)
.+|||.-.|+--=+.=.+. .-+.+.|+.+|+.. |...|||-+- +.+.++..+++++|++= .+.|.+.
T Consensus 153 HR~gLsd~iLIKdNHi~~~----g~i~~av~~~r~~~~~~~kIeVEv~----s~~q~~~a~~~g~diImLDNm~p~~ik- 223 (277)
T PRK08072 153 HRFGLYDGVMIKDNHIAFA----GSITKAVTSVREKLGHMVKIEVETE----TEEQVREAVAAGADIIMFDNRTPDEIR- 223 (277)
T ss_pred CCCCCCCEEEEEHHHHHHC----CCHHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHCCCCEEEECCCCHHHHH-
T ss_conf 1589984078647798620----7899999999986599855999719----899999998679989998798999999-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf 27563897035899999999997089167-014048876420688999999999669939975022
Q gi|254780676|r 202 NYLMVRPGARYFHSLRLLQRVKELDPLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329)
Q Consensus 202 Ly~~VRp~a~Y~rSL~vL~~aK~~~~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329)
+. ++. ..+.+. --||.|- .+.+.+..+.|||++.+|--
T Consensus 224 ------------~~---v~~---~~~~~~~EaSGgI~---------~~ni~~yA~tGVD~IS~g~l 262 (277)
T PRK08072 224 ------------EF---VKL---VPSAIVTEASGGIT---------LENLPKYGGTGVDYISLGFL 262 (277)
T ss_pred ------------HH---HHH---HCCCEEEEEECCCC---------HHHHHHHHHCCCCEEECCHH
T ss_conf ------------99---996---16964999988998---------99999999649999986810
No 319
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.40 E-value=30 Score=16.26 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCHHH--------------HHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf 610078000238469--------------999999999749624340483001031899
Q gi|254780676|r 270 TRKHHKVESFVTPQD--------------FKSYETIAYSKGFLMVSASPLTRSSYHAGD 314 (329)
Q Consensus 270 s~~h~pV~ryv~P~e--------------F~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e 314 (329)
.+.|+-|.=+|.|++ =-..+++|.+-|...++.-||.||=|+.-+
T Consensus 269 NPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppLARaLY~~~~ 327 (363)
T COG1377 269 NPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPLARALYRQVE 327 (363)
T ss_pred CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCC
T ss_conf 76611345466555589998998178699999999999849956418077999997257
No 320
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=30.38 E-value=45 Score=15.06 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 88235799999999707751898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329)
....+|..+|+.-...|.+...|--.|. -.+ |..---..|++|.+.. .+-+.+ -.=--+.+.++.++++|.|.+
T Consensus 26 ~~~gdP~~~a~~~~~~g~d~l~i~DLda--a~~-~~~~n~~~I~~I~~~~-~~pi~v--GGGIrs~~~~~~l~~~Ga~kv 99 (234)
T cd04732 26 VYSDDPVEVAKKWEEAGAKWLHVVDLDG--AKG-GEPVNLELIEEIVKAV-GIPVQV--GGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEECCC--HHH-CCCCHHHHHHHHHHHC-CCCEEE--CCCCCCHHHHHHHHHCCCCEE
T ss_conf 7579999999999986999899996753--030-8911599999999767-956897--377175999999986488718
Q ss_pred HHCCCCC
Q ss_conf 2013830
Q gi|254780676|r 193 NHNLETV 199 (329)
Q Consensus 193 nHNiETV 199 (329)
.=|-++.
T Consensus 100 vi~s~~~ 106 (234)
T cd04732 100 IIGTAAV 106 (234)
T ss_pred EECCCHH
T ss_conf 9714011
No 321
>PRK06857 consensus
Probab=30.33 E-value=45 Score=15.06 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329)
..|.++-..+++|...=|++.+=||--+-+ -.+.|+++++..|+..|-+=+= =+.+.++..+++|.+-
T Consensus 20 ~~~~~~a~~~~~al~~gGi~~iEiTlrt~~---------a~~~I~~l~~~~p~~~vGaGTV---~~~e~~~~a~~aGA~F 87 (209)
T PRK06857 20 IDDAEDILPLAKVLAENGLPVAEITFRSAA---------AAEAIRLLREAYPDMLIGAGTV---LTPEQVDAAKEAGADF 87 (209)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHHHHHHHHHCCCCEEEEEEC---CCHHHHHHHHHCCCCE
T ss_conf 599999999999999879988999589932---------9999999997589948999937---6799999999839999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC-------C
Q ss_conf 320138300027563897035899999999997089167014048876420688999999999669939975-------0
Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM-------G 264 (329)
Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi-------G 264 (329)
+ |-|+-+ -++++++++.+.-.. -|.| |..|+..++ +.|++++-+ |
T Consensus 88 i-------------VSP~~~----~~v~~~a~~~~i~~i--PGv~-----TpsEi~~A~----~~G~~~vKlFPA~~~gG 139 (209)
T PRK06857 88 I-------------VSPGFN----PNTVKYCQQLNIPIV--PGVN-----NPSLVEQAL----EMGLTTLKFFPAEASGG 139 (209)
T ss_pred E-------------ECCCCC----HHHHHHHHHCCCCEE--CCCC-----CHHHHHHHH----HCCCCEEEECCCCCCCC
T ss_conf 9-------------908999----999999997499654--7879-----999999999----87999899786621266
Q ss_pred -HHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -222786100780002-----38469999999999749624340483001031899999999998541
Q gi|254780676|r 265 -QYLQPTRKHHKVESF-----VTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQH 326 (329)
Q Consensus 265 -QYL~Ps~~h~pV~ry-----v~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~ 326 (329)
.||+-=..-+|=.+| |+++.+.+|=+. -.+..|..+.|+..++-+...|.++.+.-++-
T Consensus 140 ~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~---~~v~~~gGS~l~~~~~i~~~d~~~I~~~a~~~ 204 (209)
T PRK06857 140 VNMLKALLAPYPNLQIMPTGGINPSNIKDYLAI---PNVVACGGTWMVPKKLIDNGNWDEIGRLVREV 204 (209)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCC---CCEEEEECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 999999865389980996489888789999859---98899989365899999728999999999999
No 322
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=30.29 E-value=42 Score=15.24 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99866899999999749823652578878767508972699986652235352234467899888823579999999970
Q gi|254780676|r 49 PVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM 128 (329)
Q Consensus 49 p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l 128 (329)
+.|-.-.-...+|++.+-.. .+-||-+++. ..=.-| ...-|....++|| ..+
T Consensus 11 SGGVDSSVaA~lLk~QGyeV-----------------iGl~m~~~~~--~~~~~C------~s~~d~~da~~va---~~L 62 (356)
T COG0482 11 SGGVDSSVAAYLLKEQGYEV-----------------IGLFMKNWDE--DGGGGC------CSEEDLRDAERVA---DQL 62 (356)
T ss_pred CCCHHHHHHHHHHHHCCCEE-----------------EEEEEEEECC--CCCCCC------CCHHHHHHHHHHH---HHH
T ss_conf 57778999999999769749-----------------9999996414--788867------7256789999999---980
Q ss_pred CCCEEEE
Q ss_conf 7751898
Q gi|254780676|r 129 KLSHVVI 135 (329)
Q Consensus 129 ~Lk~vVi 135 (329)
|..|-|+
T Consensus 63 GIp~~~v 69 (356)
T COG0482 63 GIPLYVV 69 (356)
T ss_pred CCCEEEE
T ss_conf 9955998
No 323
>KOG2598 consensus
Probab=30.14 E-value=39 Score=15.48 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8878767508972699986652235352234467899888823579999999970775189850
Q gi|254780676|r 74 GCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137 (329)
Q Consensus 74 ~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTS 137 (329)
--|||.||| ++||.. +| .-+.--+-.|-++.+..+.+||-|+||+-.
T Consensus 156 ltPNI~Ea~-------~Ll~~~-~~---------~~~~i~~v~di~~~~~~ihk~gpk~VlvkG 202 (523)
T KOG2598 156 LTPNIPEAF-------ILLKKE-KR---------EISKIQSVFDIAKDAAKIHKLGPKNVLVKG 202 (523)
T ss_pred HCCCHHHHH-------HHHHHC-CC---------CCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 378829999-------997313-46---------875535699999999999844865399857
No 324
>PRK13239 alkylmercury lyase; Provisional
Probab=30.02 E-value=28 Score=16.48 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHC--CCC--EEECCHHCCCCCCC
Q ss_conf 30002756389703589999999999708916701404887642068899999999966--993--99750222786100
Q gi|254780676|r 198 TVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTA--DVD--FLTMGQYLQPTRKH 273 (329)
Q Consensus 198 TV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~--gvd--ilTiGQYL~Ps~~h 273 (329)
.++||+..-+|...-.-.+.+|+...+-. =.|++.|---+|=+.|+|..++..+.+. +.| |+-.|=-|+||+..
T Consensus 7 ~~~~l~~~~~~~~~~~l~~~llr~La~G~--PVs~~~LA~~~g~~~e~v~~~L~~~~~teyD~~G~Iig~GLTlrpT~Hr 84 (206)
T PRK13239 7 ILERLTIGNEPKGTARLLVPLLRELAKGR--PVSRETLAGALGWPVEEVAAVLEQAPDTEYDEDGRIIGYGLTLRPTPHR 84 (206)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCE
T ss_conf 99834567787755559999999985699--9999999988699999999999857772585898588650411666867
Q ss_pred CCCC
Q ss_conf 7800
Q gi|254780676|r 274 HKVE 277 (329)
Q Consensus 274 ~pV~ 277 (329)
.-|.
T Consensus 85 f~v~ 88 (206)
T PRK13239 85 FEVD 88 (206)
T ss_pred EEEC
T ss_conf 8989
No 325
>PRK05211 consensus
Probab=29.71 E-value=46 Score=14.99 Aligned_cols=177 Identities=11% Similarity=0.105 Sum_probs=88.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 66522353522344678998888235799999999707751898505445345325899999999998533586899815
Q gi|254780676|r 92 LGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 92 lG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
.+.-|-|.-.|-+ ... -..|..+|+.-...|.++..+.-.+. -. .|-....+.|++|.+.+ .+-+++
T Consensus 4 kdg~~Vk~~~f~~-----~~~--~gDP~~~ak~~~~~gadelhivDld~--a~-~g~~~n~~~I~~i~~~~-~~Pl~v-- 70 (248)
T PRK05211 4 RDGQVVKGVQFRN-----HEI--IGDIVPLAKRYAEEGADELVFYDITA--SS-DGRVVDKSWVSRVAEVI-DIPFCV-- 70 (248)
T ss_pred CCCEEEECCCCCC-----CEE--CCCHHHHHHHHHHCCCCEEEEEECCC--CC-CCCCCHHHHHHHHHHHC-CCCEEE--
T ss_conf 3986576857668-----867--78999999999986999899997867--76-78721499999999767-985896--
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCE-EEE----------CCCEEEEE
Q ss_conf 46234468999874107023320138300027563897035899999999-9970891-670----------14048876
Q gi|254780676|r 172 PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR-VKELDPL-IFT----------KSGIMLGL 239 (329)
Q Consensus 172 PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~~~-i~T----------KSGlMvGL 239 (329)
-.=-.+.+.++.++++|.|.+.=|-.-+ .+. ++++. ++.+|.. +.. ..+-.-+.
T Consensus 71 GGGIrs~~~i~~ll~~GadkViigs~a~-------------~np-~li~~~~~~fG~q~IvvsiD~~~~~~~~~~~v~~~ 136 (248)
T PRK05211 71 AGGIKSVEDAREILSFGADKISINSPAL-------------ADP-TLITRLADRFGVQCIVVGIDSWFDAETGKYQVYQY 136 (248)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECCHHH-------------HCC-HHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEE
T ss_conf 2780138999999987998899897676-------------196-18999998579936999997102555785799982
Q ss_pred -E------ECHHHHHHHHHHHHHCCCCEEECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf -4------20688999999999669939975022278-61007800023846999999999974962434048
Q gi|254780676|r 240 -G------ETRNEILQLMDDLRTADVDFLTMGQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 240 -G------Et~eEi~e~l~DLr~~gvdilTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
| .|.-++++.++.+.+.|+.-+-+.---+- +..- -.|+.++.+.......-++||=
T Consensus 137 ~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~IdrDG~~~G---------~dl~l~~~i~~~~~iPvIasGG 200 (248)
T PRK05211 137 TGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQDGVRNG---------YDLAQLKKVRAICHVPLIASGG 200 (248)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC---------CCHHHHHHHHHHCCCCEEEECC
T ss_conf 586565304773699999999975986699989878997278---------8999999999746999999888
No 326
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=29.70 E-value=25 Score=16.81 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHH-HHHCCCHHHHHCCCCCCCCCCCC--CCCCHHHHHHHH
Q ss_conf 45325899999999998533586899815462344-689998-74107023320138300027563--897035899999
Q gi|254780676|r 143 LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-PHALEK-VVSAKPDVFNHNLETVASNYLMV--RPGARYFHSLRL 218 (329)
Q Consensus 143 L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-~~al~~-v~~A~pdV~nHNiETV~rLy~~V--Rp~a~Y~rSL~v 218 (329)
-.+||+.| +....++=...|+. .|+.|-.--+ ...+.. +.+-+|-+| +|- .+||... -|..+|.-.+.-
T Consensus 122 g~~~g~~H-s~~~~a~~~~iPgl--~Vv~Ps~~~da~~ll~~ai~~~~Pv~~---~e~-~~ly~~~~~vp~~~~~~~~Gk 194 (326)
T CHL00144 122 GRQLGAEH-SQRLESYFQAVPGL--QIVACSTPYNAKGLLKSAIRSDNPVLF---FEH-VLLYNLKEEIPDGEYLLPLEK 194 (326)
T ss_pred CCCCCCCC-CCCHHHHHHCCCCC--EEEECCCHHHHHHHHHHHHHCCCCEEE---EEC-CCCCCCCCCCCCCCCCCCCCE
T ss_conf 78875412-44568898338995--899569878889999999972898189---953-455787644776556654676
Q ss_pred HHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 999997089167014048876420688999999999669939975
Q gi|254780676|r 219 LQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 219 L~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
-+..+ .|.++ .+++.|..-.+.+++.+.|.+-|++.=-|
T Consensus 195 a~v~r-~G~Dv-----TIVa~G~mv~~al~Aae~L~~~gI~~eVI 233 (326)
T CHL00144 195 AELVR-DGEDI-----TILTYSRMRHHVIQAVKLLVTKGYDPEVI 233 (326)
T ss_pred EEEEE-ECCCE-----EEEECHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89997-27987-----99930677999999999999779976898
No 327
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=29.59 E-value=46 Score=14.97 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEC------CCCCCCCCCHH------HHHHHHHHHHHHHCC-CCEEEEEC-CC--CCCC
Q ss_conf 823579999999970775189850------54453453258------999999999985335-86899815-46--2344
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITS------VDRDDLDDGGA------QHFAEVISAIRESAP-STTIEVLT-PD--FLRK 177 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTS------V~RDDL~DgGA------~hfa~~I~~Ir~~~P-~~~IEvLi-PD--f~G~ 177 (329)
||+.-.+.|+-+..+|...+-|-. |.+ .-.|| ...+++|+++++..+ -++|-+=+ .| ..--
T Consensus 64 dp~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~---~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~ 140 (309)
T pfam01207 64 DPALLAEAAKLVADLGADIIDINMGCPAKKVTR---GGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENA 140 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCC---CCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 999999999998863999896518999999878---99776254177899999999997558854675433788763889
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE--CHHHHHHHHHHHHH
Q ss_conf 6899987410702332013830002756389703589999999999708916701404887642--06889999999996
Q gi|254780676|r 178 PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE--TRNEILQLMDDLRT 255 (329)
Q Consensus 178 ~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE--t~eEi~e~l~DLr~ 255 (329)
.+-++.+.++|.+-+.=.--|....|. +.++|+. ++.+|+.-+ + -.+|=|. +.++.. .-|..
T Consensus 141 ~~~~~~l~~~G~~~itvH~Rt~~q~~~---g~a~w~~----i~~~k~~~~-i-----pvi~NGdi~~~~d~~---~~l~~ 204 (309)
T pfam01207 141 VEIARRVEDAGAQALTVHGRTRAQNYE---GPADWDA----IKQVKQAVS-I-----PVIANGDITDAEDAQ---RCLSY 204 (309)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHCCC---CCCCHHH----HHHHHHHCC-C-----CEEEECCCCCHHHHH---HHHHH
T ss_conf 999999984688879996763240267---8654189----999998589-8-----289808948899999---99861
Q ss_pred CCCCEEECCHHCC
Q ss_conf 6993997502227
Q gi|254780676|r 256 ADVDFLTMGQYLQ 268 (329)
Q Consensus 256 ~gvdilTiGQYL~ 268 (329)
.|||=+-||.-.-
T Consensus 205 tg~dgvMigRga~ 217 (309)
T pfam01207 205 TGADGVMIGRGAL 217 (309)
T ss_pred HCCCEEEECHHHH
T ss_conf 0999999848977
No 328
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=29.52 E-value=46 Score=14.97 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCHHHHH----HHHHHHHHHC-CCEEE--ECCCE--EEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 7035899----9999999970-89167--01404--88764206889999999996699399750
Q gi|254780676|r 209 GARYFHS----LRLLQRVKEL-DPLIF--TKSGI--MLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 209 ~a~Y~rS----L~vL~~aK~~-~~~i~--TKSGl--MvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
+.+.+.+ +++++.+|+. ++++. .|=+. .+.-|.+.+|.++.+..|.+.|+|.|.+.
T Consensus 197 GGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~~~g~~~~e~~~~a~~l~~~gvd~i~vs 261 (336)
T cd02932 197 GGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99789998899999999999839988706896452357899899999999999997599789955
No 329
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=29.49 E-value=46 Score=14.96 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 88235799999999707751898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329)
-+++|....|+.....|.+.+=|- |-+|. ..=.+.|++||+..++- ++ |.-|..+.++.-+ -+.-....=
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~Kik-vg~~~------~~d~~~v~~ir~~~g~~-~~-l~vDan~~~~~~~-A~~~~~~l~ 153 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLK-VGRDP------ARDVAVVAALREAVGDD-AE-LRVDANRGWTPKQ-AIRALRALE 153 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE-CCCCH------HHHHHHHHHHHHHCCCC-CE-EEECCCCCCCHHH-HHHHHHHHC
T ss_conf 999999999999997599989997-68985------99999999999872999-67-9857877889999-999998640
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf 20138300027563897035899999999997089167014048876420688999999999669939975022278610
Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
..|++=+|.=. +..++ +-++..++ ++++-+-+||+.-...+...-+..-.||++ ||..
T Consensus 154 ~~~i~w~EeP~----~~~d~----~~~~~L~~-------~~~ipIa~gEs~~~~~~~~~~i~~~~~d~v------~~d~- 211 (265)
T cd03315 154 DLGLDYVEQPL----PADDL----EGRAALAR-------ATDTPIMADESAFTPHDAFRELALGAADAV------NIKT- 211 (265)
T ss_pred CCCCEEEECCC----CCCCH----HHHHHHHH-------CCCCCEEECCCCCCHHHHHHHHHHHCHHHE------EECC-
T ss_conf 05854884789----98999----99999985-------199999908987999999999987261341------4087-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 078000238469999999999749624340483
Q gi|254780676|r 273 HHKVESFVTPQDFKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 273 h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl 305 (329)
.+.=--.++.+..++|...|...+..+.+
T Consensus 212 ----~~~GGit~~~kia~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 212 ----AKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred ----CCCCHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf ----76474999999999999869958978965
No 330
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=29.48 E-value=46 Score=14.96 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=14.1
Q ss_pred HHHHHCCCC-EEECCCCCCCHHHHHCCC
Q ss_conf 999974982-365257887876750897
Q gi|254780676|r 59 NILRSRNLT-TVCEEAGCPNIGECWNKN 85 (329)
Q Consensus 59 ~~l~~~~L~-TVCeeA~CPNi~ECw~~g 85 (329)
+.-.+.+|. .|=-|..=-.+.|=|..+
T Consensus 49 ~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~ 76 (330)
T COG0620 49 KDQEEAGLDVLVDGEFERNDMVEYFAEK 76 (330)
T ss_pred HHHHHCCCCEECCCCEEEHHHHHHHHHH
T ss_conf 9999649726348971430789999987
No 331
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=29.47 E-value=46 Score=14.96 Aligned_cols=139 Identities=23% Similarity=0.330 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCH-------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 882357999999997077518985054453--45325-------899999999998533586899815462344689998
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDD--LDDGG-------AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEK 183 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDD--L~DgG-------A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~ 183 (329)
+-..|.+.+.+-.+.+|++|.+|..---+| +..-. -..+...+.++.+.. .+..+.
T Consensus 36 ~~~~E~e~a~~~a~~~gi~~~~i~~~~l~~~~~~~N~~~RCy~CK~~l~~~l~~~a~~~---g~~~v~------------ 100 (202)
T cd01990 36 FPRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEEL---GLDVVL------------ 100 (202)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCEEE------------
T ss_conf 99789999999998639857997341110165545975562299899999999999967---997894------------
Q ss_pred HHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 74107023320138300027563897035899999999997089167014048876420688999999999669939975
Q gi|254780676|r 184 VVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 184 v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
-+.|..-.- .-||+ |+.+++.+ +. |=++ =.|=+.+||.+..+.| |..
T Consensus 101 --------dGtn~dDl~----d~RPG---------l~A~~e~~--v~--sPL~-e~gl~K~eVR~la~~l---gLp---- 147 (202)
T cd01990 101 --------DGTNADDLG----DYRPG---------LKALRELG--VR--SPLA-EAGLGKAEIRELAREL---GLP---- 147 (202)
T ss_pred --------ECCCCCCCC----CCCCC---------HHHHHHCC--CC--CCHH-HCCCCHHHHHHHHHHC---CCC----
T ss_conf --------157576323----55786---------88998769--98--8526-5197889999999983---998----
Q ss_pred CHHCCCCCCC----CCCCCCCCHHHHHHHHH---HHHHCCCCEE
Q ss_conf 0222786100----78000238469999999---9997496243
Q gi|254780676|r 264 GQYLQPTRKH----HKVESFVTPQDFKSYET---IAYSKGFLMV 300 (329)
Q Consensus 264 GQYL~Ps~~h----~pV~ryv~P~eF~~~~~---~a~~~Gf~~V 300 (329)
-+=+|+.-- +|--.-+||+.....++ +=.++||..|
T Consensus 148 -~~~kp~~~CLasRip~g~~it~e~L~~v~~aE~~L~~~G~~~~ 190 (202)
T cd01990 148 -TWDKPAMACLASRIPYGTEITEERLKKVEAAEEFLRSLGFREV 190 (202)
T ss_pred -CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf -5668998754666578884899999999999999998199827
No 332
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.45 E-value=46 Score=14.96 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=83.8
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC--CC-CCCHHHHHHHHHHH----HHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 76750897269998665223535223446789--98-88823579999999----9707751898505445345325899
Q gi|254780676|r 78 IGECWNKNHATFMILGAICTRACTFCNVATGK--PQ-PLDPQEPENISWAV----RSMKLSHVVITSVDRDDLDDGGAQH 150 (329)
Q Consensus 78 i~ECw~~gtATFMilG~~CTR~C~FC~V~~G~--P~-~~D~~EP~rvA~av----~~l~Lk~vViTSV~RDDL~DgGA~h 150 (329)
+..-|-+|.||-=..| |.=.|.+|-+-..+ |. .-|..-|..||+-. |.+|-.-|-|..- -|--|-.|
T Consensus 35 R~~r~YGGiaTAD~VG--Cnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~----EP~l~~EH 108 (228)
T COG5014 35 RYSRYYGGIATADTVG--CNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGA----EPILGREH 108 (228)
T ss_pred HHHHHCCCEEECCCCC--CCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----CCCCCHHH
T ss_conf 2454146511103135--33123876666603872213021597999999999988558868996289----86446899
Q ss_pred HHHHHHHHHHHCCCCEE--EEECCCCCCCHHHHHHHHHCCCHHHHH-CC--CCCCCCCCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 99999999853358689--981546234468999874107023320-13--83000275638--9703589999999999
Q gi|254780676|r 151 FAEVISAIRESAPSTTI--EVLTPDFLRKPHALEKVVSAKPDVFNH-NL--ETVASNYLMVR--PGARYFHSLRLLQRVK 223 (329)
Q Consensus 151 fa~~I~~Ir~~~P~~~I--EvLiPDf~G~~~al~~v~~A~pdV~nH-Ni--ETV~rLy~~VR--p~a~Y~rSL~vL~~aK 223 (329)
..++|.-. ++-+. |.--- +.|-..++-..+...++|.-. -+ -+.++ |-.|. ...-|+.-|..|++.-
T Consensus 109 vlevIeLl----~~~tFvlETNG~-~~g~drslv~el~nr~nv~vRVsvKG~dpes-F~kIT~asp~~F~~QL~aLr~L~ 182 (228)
T COG5014 109 VLEVIELL----VNNTFVLETNGL-MFGFDRSLVDELVNRLNVLVRVSVKGWDPES-FEKITGASPEYFRYQLKALRHLH 182 (228)
T ss_pred HHHHHHHC----CCCEEEEEECCE-EEECCHHHHHHHHCCCCEEEEEEECCCCHHH-HHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999863----476499975776-8835888999971378639999835798899-89875689278999999999998
Q ss_pred HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 7089167014048876420688999999999669
Q gi|254780676|r 224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTAD 257 (329)
Q Consensus 224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~g 257 (329)
..|..+. -.+|.++--.+ -..+..+-|-+++
T Consensus 183 ~~g~rf~--pA~~~~f~~Ed-~~k~Lak~Lgehp 213 (228)
T COG5014 183 GKGHRFW--PAVVYDFFRED-GLKELAKRLGEHP 213 (228)
T ss_pred HCCCEEE--EHHHHCCCHHH-HHHHHHHHHCCCC
T ss_conf 4671651--01432035136-6899998754389
No 333
>TIGR00874 talAB transaldolase; InterPro: IPR004730 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=29.41 E-value=47 Score=14.95 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC--CCCCCCCCCCCCHHHH
Q ss_conf 99999997089167014048876420688999999999669939975022278--6100780002384699
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP--TRKHHKVESFVTPQDF 285 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P--s~~h~pV~ryv~P~eF 285 (329)
+.-.|+|++| .. |-+|--===+.+||.++ +|||.|||---|=- ....-||.|-..|++-
T Consensus 211 ~IY~YYK~~g--y~--T~vMgASFR~~~ei~~L------AGcD~LTIsP~LL~~L~~~~~p~~rkL~~~~~ 271 (324)
T TIGR00874 211 KIYNYYKKFG--YK--TEVMGASFRNIEEILAL------AGCDRLTISPALLDELKESEGPVERKLDPESA 271 (324)
T ss_pred HHHHHHHHCC--CC--EEEECCCCCCHHHHHHH------HCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCC
T ss_conf 7877764249--95--05715313878888887------44470016878999984303530002786545
No 334
>PRK13140 consensus
Probab=29.34 E-value=47 Score=14.94 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH
Q ss_conf 8235799999999707751898505445345325
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG 147 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG 147 (329)
|.+.-.+++++...-|...+=|--.-.|-+.||-
T Consensus 26 ~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGp 59 (257)
T PRK13140 26 TLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGP 59 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH
T ss_conf 8799999999999759999997898898776589
No 335
>PRK12346 transaldolase A; Provisional
Probab=29.28 E-value=47 Score=14.94 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHCCCHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHH
Q ss_conf 98741070233201383000275638970--------3589999999999708916701404887642068899999999
Q gi|254780676|r 182 EKVVSAKPDVFNHNLETVASNYLMVRPGA--------RYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDL 253 (329)
Q Consensus 182 ~~v~~A~pdV~nHNiETV~rLy~~VRp~a--------~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DL 253 (329)
..-.+||...++-.+--+-.-|+.--+.. ...---++-.|+|..|. ||-+|--==-+.+||.++
T Consensus 164 ~aca~Ag~~lISPFVGRI~DWyk~~~g~~~~~~~~DPGV~sV~~Iy~yyk~~gy----~T~VMgASfRn~~eI~~L---- 235 (316)
T PRK12346 164 RACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRY----ETIVMGASFRRTEQILAL---- 235 (316)
T ss_pred HHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----CCEEEEEECCCHHHHHHH----
T ss_conf 999975987977640269899982489877787777178999999999997699----805874003789999997----
Q ss_pred HHCCCCEEECCHHCCC--CCCCCCCCCCCCH
Q ss_conf 9669939975022278--6100780002384
Q gi|254780676|r 254 RTADVDFLTMGQYLQP--TRKHHKVESFVTP 282 (329)
Q Consensus 254 r~~gvdilTiGQYL~P--s~~h~pV~ryv~P 282 (329)
+|||.|||..=|-- ...+-+|.+-..|
T Consensus 236 --aGcD~LTIsP~LL~eL~~~~~~~~~~L~p 264 (316)
T PRK12346 236 --TGCDRLTISPNLLKELQEKVSPVVRKLIP 264 (316)
T ss_pred --HCCCEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf --47981200999999987265741114691
No 336
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.02 E-value=47 Score=14.91 Aligned_cols=110 Identities=24% Similarity=0.384 Sum_probs=63.2
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHCCCHHHH-HCCCCCCCCC
Q ss_conf 97077518985054453453258999999999985335-868998154623446899987410702332-0138300027
Q gi|254780676|r 126 RSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP-STTIEVLTPDFLRKPHALEKVVSAKPDVFN-HNLETVASNY 203 (329)
Q Consensus 126 ~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P-~~~IEvLiPDf~G~~~al~~v~~A~pdV~n-HNiETV~rLy 203 (329)
.+|||.-.|+--=+.=.+ .| -+.+.|+.+|+..| ...|||-+-+ .+.+...+++++|++= -|+
T Consensus 147 HR~gLsd~iLikdNHi~~--~g--~i~~av~~~r~~~~~~~~IeVEv~s----~~e~~~a~~~gadiI~LDn~------- 211 (268)
T cd01572 147 HRFGLSDAVLIKDNHIAA--AG--SITEAVRRARAAAPFTLKIEVEVET----LEQLKEALEAGADIIMLDNM------- 211 (268)
T ss_pred CCCCCCCEEEEEHHHHHH--HC--CHHHHHHHHHHHCCCCCEEEEEECC----HHHHHHHHHCCCCEEEECCC-------
T ss_conf 678863348882427876--37--8999999999867998529999488----99999999759999997799-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 56389703589999999999708916701404887642068899999999966993997502227
Q gi|254780676|r 204 LMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 204 ~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
.| ..-+..++.+ +. .. ..--||.| + .+.+.+....|||++.+|..-.
T Consensus 212 ---sp-e~~~~~v~~~---~~-~v-~ieaSGgI-----n----~~ni~~ya~~GvD~Is~g~lt~ 258 (268)
T cd01572 212 ---SP-EELREAVALL---KG-RV-LLEASGGI-----T----LENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred ---CH-HHHHHHHHHH---CC-CE-EEEEECCC-----C----HHHHHHHHHCCCCEEECCHHHC
T ss_conf ---99-9999999986---69-56-99998999-----8----9999999975999998385436
No 337
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=28.75 E-value=18 Score=17.81 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHHCC
Q ss_conf 82357999999997077
Q gi|254780676|r 114 DPQEPENISWAVRSMKL 130 (329)
Q Consensus 114 D~~EP~rvA~av~~l~L 130 (329)
||....+.++-|+..|+
T Consensus 60 Dp~~~~ka~d~VkAIgr 76 (194)
T COG1094 60 DPLALLKARDVVKAIGR 76 (194)
T ss_pred CHHHHHHHHHHHHHHHC
T ss_conf 85889989999999866
No 338
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=28.74 E-value=48 Score=14.87 Aligned_cols=197 Identities=13% Similarity=0.143 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-C-CHHHH------HHHHHHHHHHHCCCCEEEE---ECCCC--------
Q ss_conf 8235799999999707751898505445345-3-25899------9999999985335868998---15462--------
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLD-D-GGAQH------FAEVISAIRESAPSTTIEV---LTPDF-------- 174 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~-D-gGA~h------fa~~I~~Ir~~~P~~~IEv---LiPDf-------- 174 (329)
..++-.+.++....+|++.+.|=-|--++++ | .|+.. ..++|++||+..|+..|=+ |.|=-
T Consensus 49 sid~l~~~i~~~~~lGI~av~LF~v~~~~~kkd~~gs~a~~~~~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil 128 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGIL 128 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 89999999999998799979971667610068734450148654999999999987898499954101456687777754
Q ss_pred --CC---CHHHHHHH-------HHCCCHHHHHCCCCCCCCCC---CCC---CCCHHHHHHHHHHHHHHCC----------
Q ss_conf --34---46899987-------41070233201383000275---638---9703589999999999708----------
Q gi|254780676|r 175 --LR---KPHALEKV-------VSAKPDVFNHNLETVASNYL---MVR---PGARYFHSLRLLQRVKELD---------- 226 (329)
Q Consensus 175 --~G---~~~al~~v-------~~A~pdV~nHNiETV~rLy~---~VR---p~a~Y~rSL~vL~~aK~~~---------- 226 (329)
.| |...|+.+ .+||.|+++- +.=... .|| ..++|..+..++.|+-++.
T Consensus 129 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP----SdMMDGrV~aIR~~LD~~g~~~~v~ImSYsaKyaS~fYGPFRdA 204 (320)
T cd04824 129 YEDGTINNEASVKRLAEVALAYAKAGAHIVAP----SDMMDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDA 204 (320)
T ss_pred CCCCEECCHHHHHHHHHHHHHHHHCCCCEECC----HHCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCHHHHH
T ss_conf 77981764899999999999999708983341----31134689999999998789555631017777656302327888
Q ss_pred ----CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC---HHCC---CCC---CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----91670140488764206889999999996699399750---2227---861---0078000238469999999999
Q gi|254780676|r 227 ----PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG---QYLQ---PTR---KHHKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 227 ----~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG---QYL~---Ps~---~h~pV~ryv~P~eF~~~~~~a~ 293 (329)
|..--|.+--+--.-..|-+.++..|+.+ |.|||-+- -||- .-+ ..+||.-|---.||..++.-+.
T Consensus 205 ~~S~p~~gdrktYQmd~~n~~eAlre~~~D~~E-GAD~lMVKPa~~YLDiI~~~k~~~~~~Pv~aYqVSGEYaMikaaa~ 283 (320)
T cd04824 205 ACSAPSFGDRRCYQLPPGARGLALRAVERDVSE-GADMIMVKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAE 283 (320)
T ss_pred HHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 505645788754206988578999998643773-9997995276228999999998578998899976289999999998
Q ss_pred HCCCCE------------EECCCCCCCCHHHHHHH
Q ss_conf 749624------------34048300103189999
Q gi|254780676|r 294 SKGFLM------------VSASPLTRSSYHAGDDF 316 (329)
Q Consensus 294 ~~Gf~~------------V~SgPlVRSSY~A~e~~ 316 (329)
. |+.. -.+|-=.=-||+|.+..
T Consensus 284 ~-G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~e~a 317 (320)
T cd04824 284 A-GAFDLKRAVLEAMTGFRRAGADIIITYFTPELL 317 (320)
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 7-997578899999999996599999871499998
No 339
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=28.73 E-value=48 Score=14.87 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=11.7
Q ss_pred HHHHHHHCCCCEEECCHHC
Q ss_conf 9999996699399750222
Q gi|254780676|r 249 LMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 249 ~l~DLr~~gvdilTiGQYL 267 (329)
.+.++.+.|+|.+.+..=.
T Consensus 253 ~l~~~~~~~~d~is~D~~~ 271 (347)
T PRK00115 253 LLEAMAETGVDAVGLDWTV 271 (347)
T ss_pred HHHHHHHCCCCEEEECCCC
T ss_conf 6899985699889627878
No 340
>PRK12338 hypothetical protein; Provisional
Probab=28.64 E-value=37 Score=15.68 Aligned_cols=68 Identities=7% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHH-HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCC---CHHHHHHH
Q ss_conf 89999-999999708916701404887642068899999999966993997502227861007800023---84699999
Q gi|254780676|r 213 FHSLR-LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFV---TPQDFKSY 288 (329)
Q Consensus 213 ~rSL~-vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv---~P~eF~~~ 288 (329)
++|++ +|+++++..-. +-+--+-||+.....=+..+||.|.-|+-|+.- -+- |+.|-+ .++|.+.|
T Consensus 194 d~sV~~i~~~I~~~~~~--------~~~~hsVddl~~e~eII~~~~~~i~dI~y~ipg-fk~-pl~r~v~v~d~~e~d~F 263 (320)
T PRK12338 194 DRTVSKVLSVIREVSVV--------VKLVHSVEDLDVEDEIIKENNGRITDISYPIPG-FKD-PLKRSVNIYDRDEADKF 263 (320)
T ss_pred HHHHHHHHHHHHHHHEE--------EECCCCHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-CCEEECCCCCHHHHHHH
T ss_conf 56899999999987346--------522676888888789999739758751002887-574-31234477870789999
Q ss_pred HH
Q ss_conf 99
Q gi|254780676|r 289 ET 290 (329)
Q Consensus 289 ~~ 290 (329)
-+
T Consensus 264 ik 265 (320)
T PRK12338 264 IK 265 (320)
T ss_pred HH
T ss_conf 99
No 341
>PRK12276 putative heme peroxidase; Provisional
Probab=28.62 E-value=36 Score=15.72 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7269998665223535223446789988882357999999997077
Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKL 130 (329)
Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~L 130 (329)
..|+|-|+|-- |.|+-.-. .+++++-+.+-..+.+.+|
T Consensus 57 ~~a~y~v~G~K----ADlm~~~l----~ps~e~L~~~e~~l~~t~l 94 (247)
T PRK12276 57 SHAIYSIVGQK----ADLMLMIL----RPTMEELNEIENELNKLRL 94 (247)
T ss_pred CEEEEEEECCC----CCEEEEEE----CCCHHHHHHHHHHHHHCCC
T ss_conf 24899952352----20899985----7999999999999973455
No 342
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=28.62 E-value=38 Score=15.55 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.0
Q ss_pred HHHHHHCCCEEEEEC
Q ss_conf 999970775189850
Q gi|254780676|r 123 WAVRSMKLSHVVITS 137 (329)
Q Consensus 123 ~av~~l~Lk~vViTS 137 (329)
+-..++|...++=|-
T Consensus 22 ~lA~rlgi~~visTD 36 (197)
T PRK12339 22 YIARHRAIDIVLSGD 36 (197)
T ss_pred HHHHHCCCCEEECCH
T ss_conf 999974997553434
No 343
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.53 E-value=45 Score=15.05 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 99999999966993997502227
Q gi|254780676|r 246 ILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 246 i~e~l~DLr~~gvdilTiGQYL~ 268 (329)
+-+++.-+.+.+++||||.|=..
T Consensus 14 LS~vL~~ia~~~~NILTInQsIP 36 (76)
T cd04888 14 LSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999999976983999647887
No 344
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=28.42 E-value=38 Score=15.60 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=39.4
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 0775189850544534532589999999999853358689981546234468999874107
Q gi|254780676|r 128 MKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK 188 (329)
Q Consensus 128 l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329)
||-.-+|++-+|||..|=.|+-.||.++|. =++-||.+..+-++++++--
T Consensus 36 LGT~~iV~~vlD~d~~Pvag~~~~advVRD-----------GiVvdf~eaveiVrrlkd~l 85 (277)
T COG4820 36 LGTCDIVSMVLDRDGQPVAGCLDWADVVRD-----------GIVVDFFEAVEIVRRLKDTL 85 (277)
T ss_pred CCCCEEEEEEECCCCCEEEEEEHHHHHHCC-----------CEEEEHHHHHHHHHHHHHHH
T ss_conf 455507999986899767887416565414-----------54876146799999999889
No 345
>pfam06908 DUF1273 Protein of unknown function (DUF1273). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=28.24 E-value=49 Score=14.82 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=45.1
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCC
Q ss_conf 077518985054453453258999-99999998533586899815462344689998741070233201383000275
Q gi|254780676|r 128 MKLSHVVITSVDRDDLDDGGAQHF-AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYL 204 (329)
Q Consensus 128 l~Lk~vViTSV~RDDL~DgGA~hf-a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~ 204 (329)
=|+.++++.. --|...| |+++-+.|+..|+.++.+.+| |.+..+.+..--.....-+-++..-|...++
T Consensus 41 eG~ew~i~gg-------~lGve~WaaEvvl~LK~~Yp~ikl~~i~P-F~~q~~~Wne~nq~~y~~i~~~aDfv~~vs~ 110 (177)
T pfam06908 41 EGLEWFITGG-------QLGFEQWAAEVVLELKKEYPELKLAVITP-FEEQGENWNEANQEKYATILAQADFVKSVSK 110 (177)
T ss_pred CCCCEEEECC-------CCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 7987999768-------44699999999999986688827999965-5010138998899999999985996885156
No 346
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.02 E-value=49 Score=14.79 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHH---HHCCCEEEEEC---CCCCCCCCCHHH------HHHHHHHHHHHHCCC-CEEEEECC-CCCCC---
Q ss_conf 235799999999---70775189850---544534532589------999999999853358-68998154-62344---
Q gi|254780676|r 115 PQEPENISWAVR---SMKLSHVVITS---VDRDDLDDGGAQ------HFAEVISAIRESAPS-TTIEVLTP-DFLRK--- 177 (329)
Q Consensus 115 ~~EP~rvA~av~---~l~Lk~vViTS---V~RDDL~DgGA~------hfa~~I~~Ir~~~P~-~~IEvLiP-Df~G~--- 177 (329)
-.+|..+|+|++ .+|-..+-|-. +.|=--...||. ..+++|+++++..+- ++|-+-+- |=...
T Consensus 73 G~dp~~la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~ 152 (333)
T PRK11815 73 GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEF 152 (333)
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
T ss_conf 79999999999999873988535238998688732780178707999999999999873488535786316777752899
Q ss_pred -HHHHHHHHHCCCHHHH-HCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE--ECHHHH
Q ss_conf -6899987410702332-01383000275638-------970358999999999970891670140488764--206889
Q gi|254780676|r 178 -PHALEKVVSAKPDVFN-HNLETVASNYLMVR-------PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG--ETRNEI 246 (329)
Q Consensus 178 -~~al~~v~~A~pdV~n-HNiETV~rLy~~VR-------p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG--Et~eEi 246 (329)
.+-++.+.+||.+.|- |-= |. .+.-.- |-.+|++ +...|+.-|++. ++|=| .+.++.
T Consensus 153 l~~f~~~~~~aG~~~i~vH~R-~a--~l~Glspk~nR~ippl~~~~----v~~lk~~~p~ip-----vi~NGdI~s~~~~ 220 (333)
T PRK11815 153 LCDFVDTVAEAGCDRFIVHAR-KA--WLKGLSPKENREIPPLDYDR----VYRLKRDFPHLT-----IEINGGIKTLEEA 220 (333)
T ss_pred HHHHHHHHHHCCCCEEEEEEH-HH--HHCCCCHHHHCCCCCHHHHH----HHHHHHHCCCCE-----EEECCCCCCHHHH
T ss_conf 999999999759988999602-78--77267877750587304899----999997667871-----8845996999999
Q ss_pred HHHHHHHHHCCCCEEECCH
Q ss_conf 9999999966993997502
Q gi|254780676|r 247 LQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 247 ~e~l~DLr~~gvdilTiGQ 265 (329)
.+.++ .||=+-||.
T Consensus 221 ~~~l~-----~~DGVMiGR 234 (333)
T PRK11815 221 KEHLQ-----HVDGVMIGR 234 (333)
T ss_pred HHHHH-----CCCEEEEHH
T ss_conf 99985-----599621148
No 347
>PRK08123 histidinol-phosphatase; Reviewed
Probab=27.98 E-value=49 Score=14.79 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=78.9
Q ss_pred HHHHHHHHHHCCCEEEEECCC------CCCCC--CC-----HHHHHHHHHHHHHHHCCC-----CEEEE-ECCCCCCCHH
Q ss_conf 999999997077518985054------45345--32-----589999999999853358-----68998-1546234468
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVD------RDDLD--DG-----GAQHFAEVISAIRESAPS-----TTIEV-LTPDFLRKPH 179 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~------RDDL~--Dg-----GA~hfa~~I~~Ir~~~P~-----~~IEv-LiPDf~G~~~ 179 (329)
+...+++.++||+..-||.=. .|..+ |. --.-+.+.|+++|++-++ ++||+ ..| +..+
T Consensus 21 ee~v~~Ai~~Gl~~ig~TdH~p~~~~~~~~~~~~~~~m~~~~~~~Y~~~i~~lkekY~~~I~I~~GiE~dy~~---~~~~ 97 (266)
T PRK08123 21 EAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAMEQLERYIKELNELKKKYKGQIKIRIGLEVDYIE---GYEE 97 (266)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC---CCHH
T ss_conf 9999999987999899747998864335765110234788899999999999999826788189988744467---6389
Q ss_pred HHHHHHHC-CC--H-HH--HHCCCCCCCCCCC-------------CC-CCCHHHHHHHHHHHHHHCC-----------CE
Q ss_conf 99987410-70--2-33--2013830002756-------------38-9703589999999999708-----------91
Q gi|254780676|r 180 ALEKVVSA-KP--D-VF--NHNLETVASNYLM-------------VR-PGARYFHSLRLLQRVKELD-----------PL 228 (329)
Q Consensus 180 al~~v~~A-~p--d-V~--nHNiETV~rLy~~-------------VR-p~a~Y~rSL~vL~~aK~~~-----------~~ 228 (329)
.+..+++. +| | ++ .|.+......++. .+ +.+-|++-++.+..+-+.+ ++
T Consensus 98 ~~~~~l~~~~~~~DyvIgSvH~v~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~g~~~~~vlgH~D 177 (266)
T PRK08123 98 ETRAFLNEYGPQLDDSILSVHFLKGQGEYYCIDYSPEMFAEIVELYGSIEQVYDAYYETVLQSIEADLGPYKPKRIGHIT 177 (266)
T ss_pred HHHHHHHHCCCCCCEEEEEEEEECCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 99999997288789899735687799865215689899999998649999999999999999998271565676541566
Q ss_pred EEECCCEEEEE-EECHHHHHHHHHHHHHCCC--CEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 67014048876-4206889999999996699--39975022278610078000238469999999999749624340
Q gi|254780676|r 229 IFTKSGIMLGL-GETRNEILQLMDDLRTADV--DFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329)
Q Consensus 229 i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gv--dilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329)
+..+-+--... ....+.+.+.++.+.+.|+ +|=|=|=+- |- --.-|..++ +=+.+.++|.+.+.+
T Consensus 178 lik~~~~~~~~~~~~~~~i~~il~~~~~~g~~lEiNtsgl~k-~~----~~e~yP~~~----il~~~~~~G~~i~ig 245 (266)
T PRK08123 178 LVRKFQKLFPYEESIKQLLEEILAEIKKRGYELDFNTAGLRK-PY----CGEPYPPGE----IITLAKKLGIPLVYG 245 (266)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHCC-CC----CCCCCCCHH----HHHHHHHCCCEEEEE
T ss_conf 998706147850668999999999999809857740312026-76----777788499----999999869919996
No 348
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.96 E-value=49 Score=14.78 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=65.6
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 51898505445345325899999999998533586899815462344689998741070233201383000275638970
Q gi|254780676|r 131 SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGA 210 (329)
Q Consensus 131 k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a 210 (329)
+-.||||.+ |- -+-..+..++.+.|.+.|.+.---++|+..+-+.+- ....+|-.=+ + ..-=..|-|.
T Consensus 137 ~IGVITS~t------gA--airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~--aI~~an~~~~-~-DvlIVaRGGG 204 (440)
T COG1570 137 KIGVITSPT------GA--ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVE--AIERANQRGD-V-DVLIVARGGG 204 (440)
T ss_pred EEEEECCCC------HH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH--HHHHHHCCCC-C-CEEEEECCCC
T ss_conf 689981870------58--999999998753888729998214417870999999--9998634589-9-8899916863
Q ss_pred HHH--HHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHHC
Q ss_conf 358--999999999970891670140488764-2068899999999966
Q gi|254780676|r 211 RYF--HSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRTA 256 (329)
Q Consensus 211 ~Y~--rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~~ 256 (329)
+-+ ++.+=-.-+++.. -.+.-+|-+.| |||--+.+-.-|+|+.
T Consensus 205 SiEDLW~FNdE~vaRAi~---~s~iPvISAVGHEtD~tL~DfVAD~RAp 250 (440)
T COG1570 205 SIEDLWAFNDEIVARAIA---ASRIPVISAVGHETDFTLADFVADLRAP 250 (440)
T ss_pred HHHHHHCCCHHHHHHHHH---HCCCCEEEECCCCCCCCHHHHHHHCCCC
T ss_conf 488886158099999998---0799858406667775287764313479
No 349
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=27.85 E-value=49 Score=14.77 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHHHHHCCCCEEEE---ECCCCC-CCHHHH
Q ss_conf 882357999999997077518985054453453258-------999999999985335868998---154623-446899
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-------QHFAEVISAIRESAPSTTIEV---LTPDFL-RKPHAL 181 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-------~hfa~~I~~Ir~~~P~~~IEv---LiPDf~-G~~~al 181 (329)
...+.-.+.++....+|++.+.|=-|.-++++|.-+ +...++|++||+..|+..|=+ |.|=-. |.
T Consensus 54 ~sid~l~~~v~~~~~lGI~av~LFpvi~~~~Kd~~gseA~n~~~lv~raIr~iK~~fpdl~vi~DVcLc~YT~hGH---- 129 (322)
T pfam00490 54 LSVDLLVKEVEEAVELGIPAVILFGVIDPELKDEDGSEAYNPDGLVQRAIRAIKEAFPDLVVITDVCLCEYTSHGH---- 129 (322)
T ss_pred ECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC----
T ss_conf 4899999999999977998799844586023895536124874289999999998689706751000366668877----
Q ss_pred HHHHHCCCHHHHHCCCCCCCCCCC-----------CCCCCHHHHHHHHHHHHHHCC------------------------
Q ss_conf 987410702332013830002756-----------389703589999999999708------------------------
Q gi|254780676|r 182 EKVVSAKPDVFNHNLETVASNYLM-----------VRPGARYFHSLRLLQRVKELD------------------------ 226 (329)
Q Consensus 182 ~~v~~A~pdV~nHNiETV~rLy~~-----------VRp~a~Y~rSL~vL~~aK~~~------------------------ 226 (329)
+-+++-+ .| -|=+|+++|-+. |-|-.--+-+...+|.+-+..
T Consensus 130 cGil~~g-~I--dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRd 206 (322)
T pfam00490 130 CGILEDG-EV--DNDETLELLAKQALSHAEAGADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRD 206 (322)
T ss_pred CCCCCCC-CE--ECHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHH
T ss_conf 1237599-58--05999999999999999759982040312567899999999977999872643067663401204788
Q ss_pred -----CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC---HHCCC-----CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -----91670140488764206889999999996699399750---22278-----610078000238469999999999
Q gi|254780676|r 227 -----PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG---QYLQP-----TRKHHKVESFVTPQDFKSYETIAY 293 (329)
Q Consensus 227 -----~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG---QYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~ 293 (329)
|..--|++--+--+-..|-+.+...|+.+ |.|+|-+- -||-= ..-++||.-|---.||..++.-+.
T Consensus 207 A~~S~~~~gdrktYQmd~~n~~eAl~e~~~D~~E-GAD~lMVKP~~~YLDii~~~k~~~~~P~~aYqVSGEYamik~aa~ 285 (322)
T pfam00490 207 AAGSAPAFGDRKTYQMDPANRREALREVALDIEE-GADMVMVKPALPYLDIIRRVKDRFDLPVAAYQVSGEYAMIKAAAQ 285 (322)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
T ss_conf 8615765688030116998779999999855760-998698626416899999999834998799976699999999998
Q ss_pred HCCCCE---E---------ECCCCCCCCHHHHHHH
Q ss_conf 749624---3---------4048300103189999
Q gi|254780676|r 294 SKGFLM---V---------SASPLTRSSYHAGDDF 316 (329)
Q Consensus 294 ~~Gf~~---V---------~SgPlVRSSY~A~e~~ 316 (329)
. |+.. + -+|-=.=-||+|.+..
T Consensus 286 ~-g~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 319 (322)
T pfam00490 286 N-GWLDEKRVVLESLLSIKRAGADLIITYFAKEAA 319 (322)
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 6-997688899999999886289889860499998
No 350
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=49 Score=14.76 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC----CCCCCHHHHHHHHHC
Q ss_conf 8882357999999997077518985054453453258999999999985335868998154----623446899987410
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTP----DFLRKPHALEKVVSA 187 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiP----Df~G~~~al~~v~~A 187 (329)
|+-|+|-..-|.+..+-|-.-+-|--=..|--|.--...|.+++..||+.++++.|-.-+. +..+..+.+. ....
T Consensus 25 P~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg~g~~~~~~~~er~~-~~~~ 103 (298)
T COG3246 25 PVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVINLTTGEGGDLVMPTEERAS-PWAL 103 (298)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCC-CCCC
T ss_conf 999999999999999648416898745899986669999999999997148986999504445556556565415-5545
Q ss_pred CCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-----
Q ss_conf 70233201383-00027563897035899999999997---0891670140488764206889999999996699-----
Q gi|254780676|r 188 KPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKE---LDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV----- 258 (329)
Q Consensus 188 ~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~---~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv----- 258 (329)
.|+.+|-|+-+ .. ..-++++....- .+...-+.-.++.-+=...+.+...+..+ ||
T Consensus 104 ~Pe~~~~~~~~~~~------------~~v~el~~e~~~~~~~~~~~~~~d~vf~nt~~~~r~~~~~~~~~---gvrpele 168 (298)
T COG3246 104 RPEALSMNLSEFRL------------PHVLELLPEIGTLDEGGLNFAERDEVFRNLPGDLRAVRRRIEEL---GVRPELE 168 (298)
T ss_pred CCCCCCCCCCCCCC------------HHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHC---CCCCCCC
T ss_conf 87512233311362------------77998758766321320003466425753767899999998862---7666744
Q ss_pred ----------CEEECCHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHC
Q ss_conf ----------399750222786100780--0023846999999999974
Q gi|254780676|r 259 ----------DFLTMGQYLQPTRKHHKV--ESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 259 ----------dilTiGQYL~Ps~~h~pV--~ryv~P~eF~~~~~~a~~~ 295 (329)
-.+.=+|+++|-..|-=+ ..|=-|+.-..++..+-.+
T Consensus 169 ~~D~ghl~~~~~l~~~g~~~ppll~q~~~gi~~g~p~~~~~~~~m~d~~ 217 (298)
T COG3246 169 CADTGHLYFAGRLADEGLLEPPLLHQFVLGILGGAPADLNTMKAMADRL 217 (298)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 1327889999986124767873555333314567750367899887527
No 351
>PRK13118 consensus
Probab=27.61 E-value=50 Score=14.74 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 8999999999970891670140488764206889999999996699399750222
Q gi|254780676|r 213 FHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
..-.+.++.+|+. |.--+.+|.|=+..|-+.. +.+ .+|-+-+|-.+
T Consensus 191 ~~~~~~i~~ik~~-----t~~Pv~vGFGIs~~e~~~~---v~~-~aDGvIVGSa~ 236 (269)
T PRK13118 191 EHVEEAVARLRRH-----TDLPVVVGFGIRDAESAAA---IAR-LADGVVVGSAL 236 (269)
T ss_pred HHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHH---HHC-CCCEEEECHHH
T ss_conf 9899999999962-----5898178716799999999---980-09999985899
No 352
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=27.56 E-value=28 Score=16.53 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHCCCCEE--EEECCCCCCCH---------HHHHHHHHC--CCHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9999999999853358689--98154623446---------899987410--7023320138300027563897035899
Q gi|254780676|r 149 QHFAEVISAIRESAPSTTI--EVLTPDFLRKP---------HALEKVVSA--KPDVFNHNLETVASNYLMVRPGARYFHS 215 (329)
Q Consensus 149 ~hfa~~I~~Ir~~~P~~~I--EvLiPDf~G~~---------~al~~v~~A--~pdV~nHNiETV~rLy~~VRp~a~Y~rS 215 (329)
.|+|-+.-.|+...|-+.| |+|+-|+.|.. .+++.+.+. |..||=+ .-. |.
T Consensus 31 ~HlAlv~G~~~~~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~g~GVvvYLr-------------qEG---rg 94 (193)
T COG0807 31 EHLALVKGDISAEPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEEGSGVVVYLR-------------QEG---RG 94 (193)
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE-------------CCC---CC
T ss_conf 58999946777887237875313461022077787578999999998642866999960-------------577---65
Q ss_pred HHHHHHHH-----HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE-CCHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999-----708916701404887642068899999999966993997-502227861007800023846999999
Q gi|254780676|r 216 LRLLQRVK-----ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT-MGQYLQPTRKHHKVESFVTPQDFKSYE 289 (329)
Q Consensus 216 L~vL~~aK-----~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT-iGQYL~Ps~~h~pV~ryv~P~eF~~~~ 289 (329)
+.++...+ +.+.+.. .-..++|....+-+.--..+=|++.|+.-+- +.+ .|..+..+.
T Consensus 95 igl~~ki~ay~lqd~g~dtv-~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtn---------------np~K~~~l~ 158 (193)
T COG0807 95 IGLLNKIRAYALQDKGADTV-EANLALGFPADERDYGIGAQILKDLGIKKIRLLTN---------------NPRKIYGLE 158 (193)
T ss_pred CHHHHHHHHHHHHHCCCCHH-HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC---------------CHHHHHHHH
T ss_conf 15999989887544388747-78876268713777779999999709767897068---------------928888887
Q ss_pred HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99997496243404830010318999999999985413
Q gi|254780676|r 290 TIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQHL 327 (329)
Q Consensus 290 ~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~~ 327 (329)
.+ |+.-|+.=|+.--.-.+.+.|.+.+..+-.|+
T Consensus 159 ~~----Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~ 192 (193)
T COG0807 159 GF----GINVVERVPLIVGANPENEFYLKTKKEKMGHL 192 (193)
T ss_pred HC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 37----93699986047888851588999999864567
No 353
>TIGR03617 F420_MSMEG_2256 probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis.
Probab=27.49 E-value=50 Score=14.73 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=24.4
Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf 20688999999999669939975022278610
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
=|.||+.+-++.+.+.|||-+.+.....|.+.
T Consensus 276 Gtpee~~~rl~~~~~~GvD~i~l~~p~~~~~e 307 (318)
T TIGR03617 276 GPPEELAAALRARFGGLADRVSLYFPYPPGPE 307 (318)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 58999999999999679998999689998868
No 354
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=27.33 E-value=50 Score=14.71 Aligned_cols=85 Identities=25% Similarity=0.289 Sum_probs=56.2
Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCE--EEE-------ECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 775189850-------54453453258999999999985335868--998-------15462344689998741070233
Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTT--IEV-------LTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~--IEv-------LiPDf~G~~~al~~v~~A~pdV~ 192 (329)
+-.=|||-. -|||||=+==|+...+-+.++=+.+|+.. |=| ++| =+.+.++..| +|
T Consensus 88 ~advVvIPAGVPRKPGMtRDDLF~~NAgIv~~L~~a~A~~cP~A~vfi~vI~NPVNStVP------I~a~~LKk~G--~Y 159 (379)
T TIGR01772 88 GADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMVFILVISNPVNSTVP------IAAEVLKKKG--VY 159 (379)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH------HHHHHHHHCC--CC
T ss_conf 795899817878875567556755041789989999974087605899998668565179------9999999618--86
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2013830002756389703589999999999
Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQRVK 223 (329)
Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK 223 (329)
+-|=---+||+. |. +=|-=|+=-.+..++
T Consensus 160 ~pn~GierrlfG-VT-~LD~vRA~tF~~E~~ 188 (379)
T TIGR01772 160 DPNKGIERRLFG-VT-TLDIVRANTFVAEIK 188 (379)
T ss_pred CCCCCCCEEECC-CC-HHHHHHHHHHHHHHH
T ss_conf 888753024314-11-246899999999972
No 355
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=27.29 E-value=50 Score=14.70 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 789988882357999999997077-5189850544534532589999999999853358
Q gi|254780676|r 107 TGKPQPLDPQEPENISWAVRSMKL-SHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS 164 (329)
Q Consensus 107 ~G~P~~~D~~EP~rvA~av~~l~L-k~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~ 164 (329)
||.|..--..-..+.|.-..+||. +---+-+|+||||--.--+|-|--.++|-++.-+
T Consensus 64 tG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trddlvGqy~GhtaPktke~lk~a~G 122 (284)
T TIGR02880 64 TGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG 122 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf 16898724899999999998715400362678530013112212577226899987428
No 356
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.26 E-value=25 Score=16.86 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHH-HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-CEEECCHHC-----CCCCCCCCCCC
Q ss_conf 389703589999-99999970891670140488764206889999999996699-399750222-----78610078000
Q gi|254780676|r 206 VRPGARYFHSLR-LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV-DFLTMGQYL-----QPTRKHHKVES 278 (329)
Q Consensus 206 VRp~a~Y~rSL~-vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv-dilTiGQYL-----~Ps~~h~pV~r 278 (329)
|++--.+.+++- .|+ |++| ++.-+-..+|+++|.+=|.++-+-|--.+. +.+..-+|+ .||+--| ..|
T Consensus 219 v~lYrE~g~~~a~~Le--r~fg--~Py~~~~PiGv~~T~~Firel~~llg~~~~~~~~d~e~fI~~e~~~~~~~~W-~sR 293 (510)
T CHL00076 219 LVPYREVGLMTAKYLE--KEFG--MPYVSTTPMGIVDTAAFIREIQKLLNLLAPPILVDYESYIDQQTRFVSQAAW-FSR 293 (510)
T ss_pred EECCHHHHHHHHHHHH--HHHC--CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCC
T ss_conf 8354877899999998--8738--9814204865589999999999996887653447777777663026665541-004
Q ss_pred CCCHHHH--------------HHHHHHH-HHCCCCEEECCCCCCCCHHHHHH
Q ss_conf 2384699--------------9999999-97496243404830010318999
Q gi|254780676|r 279 FVTPQDF--------------KSYETIA-YSKGFLMVSASPLTRSSYHAGDD 315 (329)
Q Consensus 279 yv~P~eF--------------~~~~~~a-~~~Gf~~V~SgPlVRSSY~A~e~ 315 (329)
=+..+-| .-..+++ .+|||..|.+|-+-|. .|++.
T Consensus 294 Svd~~~ltgkr~fVfgd~ThA~~~~~~l~~EmG~~v~~~gty~r~--~a~~~ 343 (510)
T CHL00076 294 SIDCQNLTGKKAVVFGDATHAASITKILSREMGIRVVCAGTYCKH--DAEWF 343 (510)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCHHH--HHHHH
T ss_conf 575300256448998062599999998777628423541242155--55999
No 357
>KOG1798 consensus
Probab=27.24 E-value=44 Score=15.15 Aligned_cols=36 Identities=14% Similarity=0.515 Sum_probs=22.2
Q ss_pred HHCCCCCCCCCCCCHHHCCCCCCC-HHHHHHHHHHHHCC
Q ss_conf 421488888889882450017998-66899999999749
Q gi|254780676|r 28 EKIHKPDTEKMQKPDWIRVRAPVS-SGYKETYNILRSRN 65 (329)
Q Consensus 28 ~k~~~p~~~~~~kP~Wlk~~~p~~-~~~~~~~~~l~~~~ 65 (329)
++|.+| .|+.+.|+||..|+-.. ++|.. ++++.-.+
T Consensus 1126 Q~VsNP-VpRv~hPdWL~kkv~~k~dk~rQ-~ki~~~Fs 1162 (2173)
T KOG1798 1126 QGVSNP-VPRVPHPDWLQKKVAEKNDKFRQ-KKIVDIFS 1162 (2173)
T ss_pred HCCCCC-CCCCCCCHHHHHHHCCCHHHHHH-HHHHHHHH
T ss_conf 326788-87777837887544000003321-35787875
No 358
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=26.90 E-value=51 Score=14.66 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=83.8
Q ss_pred CCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHC
Q ss_conf 9888-8235799999999707751898505445345325899999999998533586899815462344-6899987410
Q gi|254780676|r 110 PQPL-DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-PHALEKVVSA 187 (329)
Q Consensus 110 P~~~-D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-~~al~~v~~A 187 (329)
|..+ +.+--..+|..||..|.+- -=||| |.= ..+| =+|||- ++.|+-+..|
T Consensus 32 PCsvEs~eq~~~~A~~vk~~Ga~~-----------LRGGA--fKP------RTSP--------YsFQGlg~~gl~~l~~A 84 (262)
T TIGR01361 32 PCSVESEEQIVETARFVKEAGAKI-----------LRGGA--FKP------RTSP--------YSFQGLGEEGLKLLRRA 84 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCE-----------EECCC--CCC------CCCC--------CCCCCCHHHHHHHHHHH
T ss_conf 877488799999999998667404-----------30663--488------8888--------41247418999999999
Q ss_pred CC--------HHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCC-
Q ss_conf 70--------2332-0138300027563897035899999999997089167014048876420688999999999669-
Q gi|254780676|r 188 KP--------DVFN-HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTAD- 257 (329)
Q Consensus 188 ~p--------dV~n-HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~g- 257 (329)
+- +|++ -++|.|-++---++-||.=-|-.++|+.+=+.+.=++-|= |||-|-+|-+.+.+=+.+.|
T Consensus 85 ~~~~GL~~vTEvmd~~d~e~~~~y~D~lQiGARNmQNF~LL~~vG~~~KPVLLKR----G~~aTi~EwL~AAEYIl~~Gs 160 (262)
T TIGR01361 85 ADETGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKR----GMGATIEEWLEAAEYILSEGS 160 (262)
T ss_pred HHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 9860994898863625677787651134222541225699999722379755307----721589999999999984688
Q ss_pred CCEE
Q ss_conf 9399
Q gi|254780676|r 258 VDFL 261 (329)
Q Consensus 258 vdil 261 (329)
+.-+
T Consensus 161 N~~V 164 (262)
T TIGR01361 161 NGNV 164 (262)
T ss_pred CCCE
T ss_conf 9954
No 359
>pfam10120 MethylPyrKinase Archaeal phosphomethylpyrimidine kinase. Members of this family of archaeal proteins possess phosphomethylpyrimidine kinase activity and involved in the thiamin biosynthetic process.
Probab=26.87 E-value=51 Score=14.65 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHH-HH
Q ss_conf 34532589999999999853358689981546234468999874107023320138300027563897035899999-99
Q gi|254780676|r 142 DLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRL-LQ 220 (329)
Q Consensus 142 DL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~v-L~ 220 (329)
+..=|+++|.|+.+-++++.+|++.--+=+ +-+.+-++.+.+.|.++..-+=+.-+. .+. +.+.++-++- ++
T Consensus 59 ~p~FGaS~H~A~~LL~a~~~~p~irsaiNi---ry~~~i~~~l~~~g~~v~~~dr~~ep~---~~~-g~tm~w~~~~a~~ 131 (169)
T pfam10120 59 PPEFGASSHVARILLAAREKDPDIRAAINI---RYDEEIVEALKKLGLKVSEFDREEEPE---EVK-GKTMQWGIEEAIE 131 (169)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEE---ECCHHHHHHHHHCCCEEEEECCCCCCH---HHH-CCHHHHHHHHHHH
T ss_conf 975687415999999999759984599994---058899999997699389967766950---220-2037789999997
Q ss_pred HHHHCCCEEEECC------CEEEEEEECHHHHHHHHHHH
Q ss_conf 9997089167014------04887642068899999999
Q gi|254780676|r 221 RVKELDPLIFTKS------GIMLGLGETRNEILQLMDDL 253 (329)
Q Consensus 221 ~aK~~~~~i~TKS------GlMvGLGEt~eEi~e~l~DL 253 (329)
.. ..-|++.--. -++.=||++..|+++-+..|
T Consensus 132 ~~-~~~pdvI~d~G~~GkEP~i~v~g~~p~evv~k~~~i 169 (169)
T pfam10120 132 SL-GGVPDVIYDLGGVGKEPMIRVLGRDPVEVVEKLREL 169 (169)
T ss_pred HC-CCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 44-999719996898773778999899989999999609
No 360
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.83 E-value=51 Score=14.65 Aligned_cols=221 Identities=10% Similarity=0.145 Sum_probs=89.7
Q ss_pred HHCCC-CCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45001-79986689999999974982365257887876750897269998665223535223446789988882357999
Q gi|254780676|r 43 WIRVR-APVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENI 121 (329)
Q Consensus 43 Wlk~~-~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rv 121 (329)
|.+.+ ..+-+++.++-+.++++++- |. -|.|..--+.+ |.+-.-.+-.-+ .|...
T Consensus 20 w~~~~~~~~q~ev~~va~~~r~~~iP--~d-----------------vi~lD~~~~~~--~~~Ftwd~~rFP---dp~~m 75 (303)
T cd06592 20 WARYKADINQETVLNYAQEIIDNGFP--NG-----------------QIEIDDNWETC--YGDFDFDPTKFP---DPKGM 75 (303)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC--CC-----------------EEEEECHHHCC--CCCEEECCCCCC---CHHHH
T ss_conf 60456077899999999999984999--88-----------------69981724458--682375821289---98999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH---HHHHC---CCCE----EEEECCCCCCC------HHHHHHHH
Q ss_conf 999997077518985054453453258999999999---98533---5868----99815462344------68999874
Q gi|254780676|r 122 SWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISA---IRESA---PSTT----IEVLTPDFLRK------PHALEKVV 185 (329)
Q Consensus 122 A~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~---Ir~~~---P~~~----IEvLiPDf~G~------~~al~~v~ 185 (329)
.+.++.+|.|.|+|.-.-= +-....|.+-.+. ||... |... =+.-.|||--. .+.++.++
T Consensus 76 i~~L~~~G~klv~~i~P~v----~~~~~~~~e~~~~g~~vk~~~g~~p~~~~~W~G~~~~~Dftnp~ar~Ww~~~~~~~~ 151 (303)
T cd06592 76 IDQLHDLGFRVTLWVHPFI----NTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred HHHHHHCCCEEEEEECCCC----CCCCHHHHHHHHCCCEEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999986994899955510----588587898986897897589984540012589765316899799999999999888
Q ss_pred -HCCCHHHHHCCCC---CCCCCCCC---CCCCHHHHHHHHHHHHHHCCCEEEECCC-------EEEEEEE---CHH----
Q ss_conf -1070233201383---00027563---8970358999999999970891670140-------4887642---068----
Q gi|254780676|r 186 -SAKPDVFNHNLET---VASNYLMV---RPGARYFHSLRLLQRVKELDPLIFTKSG-------IMLGLGE---TRN---- 244 (329)
Q Consensus 186 -~A~pdV~nHNiET---V~rLy~~V---Rp~a~Y~rSL~vL~~aK~~~~~i~TKSG-------lMvGLGE---t~e---- 244 (329)
+-|.|-|-....- .+..+... -....|.+... +.+.+.++-+.+.+| +++.+|- +++
T Consensus 152 ~~~Gidg~w~D~~Ep~~~p~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~R~~~~~~~~~~~~~~gd~~s~W~gdn~ 229 (303)
T cd06592 152 EKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYA--EMVAEFGDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNG 229 (303)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHH
T ss_conf 745975587038988658765667776448789999999--986631685889753146887779977887756876244
Q ss_pred --HHHHHHHHHHHCCCCEE---ECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf --89999999996699399---75022278610078000238469999999999749
Q gi|254780676|r 245 --EILQLMDDLRTADVDFL---TMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKG 296 (329)
Q Consensus 245 --Ei~e~l~DLr~~gvdil---TiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~G 296 (329)
..+.++.-+--.|+-.. +||=-..-. ..-....+||-|.+|-+.|.=.-
T Consensus 230 L~~~I~~~L~~glsG~p~~g~D~iGGf~~~~---~~~~~~p~~ELy~RW~Q~g~F~P 283 (303)
T cd06592 230 LKSLIPTALTMGLLGYPFVLPDMIGGNAYGG---NSDDELPDKELYIRWLQLSAFLP 283 (303)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 8999999999754397730176678867777---76789998699999999851064
No 361
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.81 E-value=51 Score=14.64 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=24.3
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 97269998665223535223446789988882357999999997-077518985054
Q gi|254780676|r 84 KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRS-MKLSHVVITSVD 139 (329)
Q Consensus 84 ~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~-l~Lk~vViTSV~ 139 (329)
.|...++++|. +|--..+..+|=.++.+++.+ .+=+-.||.++.
T Consensus 33 ~Gv~gi~v~Gs------------tGE~~~Ls~eEr~~v~~~~~~~~~g~~~vi~g~g 77 (289)
T cd00951 33 YGAAALFAAGG------------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred CCCCEEEECCH------------HHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 79999997933------------0062128999999999999998189851740676
No 362
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=26.79 E-value=51 Score=14.64 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=15.5
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 50017998668999999997498236
Q gi|254780676|r 44 IRVRAPVSSGYKETYNILRSRNLTTV 69 (329)
Q Consensus 44 lk~~~p~~~~~~~~~~~l~~~~L~TV 69 (329)
+=-+++....=..+.+.+++.+++|-
T Consensus 47 ~vg~vG~D~~G~~i~~~L~~~gVd~~ 72 (304)
T PRK09434 47 FIGRVGDDPFGRFMQQTLQDEGVDTT 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 99994798789999999986599753
No 363
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=26.67 E-value=52 Score=14.63 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC--------CCCCC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHH
Q ss_conf 82357999999997077518985054--------45345-3258999999999985335868998154623446-89998
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVD--------RDDLD-DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP-HALEK 183 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~--------RDDL~-DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~-~al~~ 183 (329)
..+-|..|..-+++..=.-+|||.-| ..||. =.-+.+|+++|++-|+..|+-- ++.| |-|-= ...+.
T Consensus 139 E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSkyFVeaVk~AR~y~p~~D-~LVI--FAGACQS~yEa 215 (287)
T pfam05582 139 EKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSKYFVETVKEARKYEPSLD-QLVI--FAGACQSHYEA 215 (287)
T ss_pred CHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEE--ECCHHHHHHHH
T ss_conf 01252999999987289989995845763377773466665410999999999982489966-3899--82144788999
Q ss_pred HHHCCC------HHHH-HCCCCC
Q ss_conf 741070------2332-013830
Q gi|254780676|r 184 VVSAKP------DVFN-HNLETV 199 (329)
Q Consensus 184 v~~A~p------dV~n-HNiETV 199 (329)
+++||. ...+ |-+.-|
T Consensus 216 ll~AGANFASSP~RVlIHaLDPV 238 (287)
T pfam05582 216 IIEAGANFASSPSRVLIHALDPV 238 (287)
T ss_pred HHHCCCCCCCCCCCEEEECCCCC
T ss_conf 99727664479521677505850
No 364
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=26.35 E-value=51 Score=14.69 Aligned_cols=179 Identities=17% Similarity=0.260 Sum_probs=93.1
Q ss_pred CCCCEEECCCC--CCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 49823652578--87876750897269998665223535223446789988-8823579999999970775189850544
Q gi|254780676|r 64 RNLTTVCEEAG--CPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQP-LDPQEPENISWAVRSMKLSHVVITSVDR 140 (329)
Q Consensus 64 ~~L~TVCeeA~--CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~-~D~~EP~rvA~av~~l~Lk~vViTSV~R 140 (329)
-+.||.-|.+- -=|-.-.|.-+.---||--.. -.+-++.|. |.. .-.+.- -++.-+++--.-.++-|
T Consensus 58 ikvhtlnenGeikiinaPyvWklkhkGkmikvkl----knWhsittt-PehPfltnnG-----WikaenikkGmyvaiPr 127 (1145)
T TIGR00491 58 IKVHTLNENGEIKIINAPYVWKLKHKGKMIKVKL----KNWHSITTT-PEHPFLTNNG-----WIKAENIKKGMYVAIPR 127 (1145)
T ss_pred EEEEEECCCCCEEEEECCEEEEEECCCCEEEEEE----ECCEEEECC-CCCCCCCCCC-----CEEHHHCCCCEEEEECC
T ss_conf 2688642677278971770575412761899986----130344037-8876102565-----14300003650686243
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCC--------CHHHHHHHHHCCCHHHHHCCCC-----CCCCCCC
Q ss_conf 53453258999999999985335--8689981546234--------4689998741070233201383-----0002756
Q gi|254780676|r 141 DDLDDGGAQHFAEVISAIRESAP--STTIEVLTPDFLR--------KPHALEKVVSAKPDVFNHNLET-----VASNYLM 205 (329)
Q Consensus 141 DDL~DgGA~hfa~~I~~Ir~~~P--~~~IEvLiPDf~G--------~~~al~~v~~A~pdV~nHNiET-----V~rLy~~ 205 (329)
.=+|..-|-+-|+-|....- +..|.|---|++. .... +.|+ -.-|++.||++- +||+.+.
T Consensus 128 ---kiyGnedfekfiefinskiltnelivkvnekdlknvelPstkiykkq-knvf-rsediiehnlniekisfsPrihrC 202 (1145)
T TIGR00491 128 ---KIYGNEDFEKFIEFINSKILTNELIVKVNEKDLKNVELPSTKIYKKQ-KNVF-RSEDIIEHNLNIEKISFSPRIHRC 202 (1145)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHH-HCCC-CHHHHHHHCCCEEEEECCCCCCCC
T ss_conf ---00375037899998743430000157751222220027612333322-0000-001343321441223216520016
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCEEEECCCEEEEEE------ECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 38970358--999999999970891670140488764------206889999999996699399750
Q gi|254780676|r 206 VRPGARYF--HSLRLLQRVKELDPLIFTKSGIMLGLG------ETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 206 VRp~a~Y~--rSL~vL~~aK~~~~~i~TKSGlMvGLG------Et~eEi~e~l~DLr~~gvdilTiG 264 (329)
=.|+|--. .||+--+.+ .-=.|.|.|=| ..+|||+.-++.|.++|+++=-|-
T Consensus 203 GkPqhyiklPkslneWkai-------fyfaGvmfGdGCvdrianndeevfnklkslnnlGieverik 262 (1145)
T TIGR00491 203 GKPQHYIKLPKSLNEWKAI-------FYFAGVMFGDGCVDRIANNDEEVFNKLKSLNNLGIEVERIK 262 (1145)
T ss_pred CCCCCEEECCCHHHHHHHH-------HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8852134454114556653-------44310002474010110561689988754542361344331
No 365
>PRK05269 transaldolase B; Provisional
Probab=26.34 E-value=52 Score=14.59 Aligned_cols=251 Identities=17% Similarity=0.172 Sum_probs=102.7
Q ss_pred CEEEECCCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH-HHHHHCCCCEEECCCCCCCHH
Q ss_conf 9114015566542011177777556824214888888898824500179986689999-999974982365257887876
Q gi|254780676|r 1 MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETY-NILRSRNLTTVCEEAGCPNIG 79 (329)
Q Consensus 1 ~~~~~d~~~~~~~~~~~~~~~~~~r~p~k~~~p~~~~~~kP~Wlk~~~p~~~~~~~~~-~~l~~~~L~TVCeeA~CPNi~ 79 (329)
|++.+|.+-+--.++-.+.+-+.++. -+|. .----|.-+..-+ ..+.|..+- ..+...+ |+...=...-
T Consensus 1 m~s~LeqLk~~T~VVaDTgD~~~I~~----~~P~-DaTTNPSLilka~-~~p~y~~ll~~ai~~~~----~~~~~~~~~i 70 (320)
T PRK05269 1 MTSKLEQLKQFTTVVADTGDIEAIKK----YQPQ-DATTNPSLILKAA-QIPEYAPLIDDAIAWAK----AQSGDDAQQI 70 (320)
T ss_pred CCCHHHHHHCCCEEECCCCCHHHHHH----CCCC-CCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH----HCCCCHHHHH
T ss_conf 96788897478768668758999986----0998-7771899999884-39568999999999988----6068778899
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCH----HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 750897269998665223535223446789-988882----357999999997077518985054453453258999999
Q gi|254780676|r 80 ECWNKNHATFMILGAICTRACTFCNVATGK-PQPLDP----QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEV 154 (329)
Q Consensus 80 ECw~~gtATFMilG~~CTR~C~FC~V~~G~-P~~~D~----~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~ 154 (329)
+|....-+- -=++.+|.+-.|+ -..+|+ +.-.-|++|-+...|=-- ..|+||-+-=.=+.-|. -
T Consensus 71 ~~~~D~l~V--------~~G~~i~~~v~GrVS~EVdarls~d~~~~i~~a~~li~ly~~--~gi~~~rilIKip~Twe-G 139 (320)
T PRK05269 71 DDAIDKLAV--------NFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIKLYEE--AGIDKDRILIKIASTWE-G 139 (320)
T ss_pred HHHHHHHHH--------HHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHH--CCCCCCCEEEECCCCHH-H
T ss_conf 999999999--------999999725898648887520226878999999999999997--49982325774488788-9
Q ss_pred HHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCC----------CCCCCHHHHHHHHHHHHH
Q ss_conf 999985335868998-154623446899987410702332013830002756----------389703589999999999
Q gi|254780676|r 155 ISAIRESAPSTTIEV-LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM----------VRPGARYFHSLRLLQRVK 223 (329)
Q Consensus 155 I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~----------VRp~a~Y~rSL~vL~~aK 223 (329)
|++.|.+.-+ .|.+ |+-=| .-.+| ..-.+||...+.-.+--+-.-|+. --|+- .---++..|+|
T Consensus 140 i~Aa~~Le~~-gI~~nlTlvF-s~~QA-~a~a~Ag~~~ISPfVGRi~DWyk~~~~~~~~~~~~DPGV--~sV~~Iy~yyk 214 (320)
T PRK05269 140 IRAAEQLEKE-GINCNLTLLF-SFAQA-RACAEAGVFLISPFVGRILDWYKKNTGGKDYAPAEDPGV--VSVTKIYNYYK 214 (320)
T ss_pred HHHHHHHHHC-CCCEEEEEEC-CHHHH-HHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf 9999999975-9624577762-69999-999975986987641257789985567777876679549--99999999999
Q ss_pred HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC--CCCCCCCCCCCCHHHHHH
Q ss_conf 7089167014048876420688999999999669939975022278--610078000238469999
Q gi|254780676|r 224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP--TRKHHKVESFVTPQDFKS 287 (329)
Q Consensus 224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P--s~~h~pV~ryv~P~eF~~ 287 (329)
..|. |+=+|--==-..+||+++ +|||.|||..=|-- ....-++.+...|+.+..
T Consensus 215 ~~gy----~T~VMgASfRn~~eI~aL------AGcD~lTIsP~LL~eL~~~~~~~~~~l~~~~~~~ 270 (320)
T PRK05269 215 KHGY----KTVVMGASFRNIGQILAL------AGCDRLTISPALLEELAASEGELERKLSPAKAGE 270 (320)
T ss_pred HCCC----CCEEEEEECCCHHHHHHH------HCCCEEEECHHHHHHHHHCCCCCCCCCCHHHCCC
T ss_conf 7599----854864002789999997------4798231189999998707675331279212111
No 366
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=26.28 E-value=2.1 Score=24.39 Aligned_cols=110 Identities=14% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH--------HHHHC
Q ss_conf 223535223446789988----882357999999997077518985054453453258999999999--------98533
Q gi|254780676|r 95 ICTRACTFCNVATGKPQP----LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISA--------IRESA 162 (329)
Q Consensus 95 ~CTR~C~FC~V~~G~P~~----~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~--------Ir~~~ 162 (329)
.|.-+|-||=|+.--|.. .-.|.-.|+ .-|.=+|+.+|-.+-.| |.+.|+. |+..+
T Consensus 83 ~C~N~C~FCFidQlP~GmR~sLY~KDDDyRL----SFL~GNfiTLTNl~e~D--------~~RIi~~rLSPl~ISVHaT~ 150 (433)
T TIGR03279 83 QCNNRCPFCFIDQQPPGKRESLYLKDDDYRL----SFLYGSYLTLTNLPPAE--------WQRIEQLRLSPLYVSVHATE 150 (433)
T ss_pred HCCCCCCEEEECCCCCCCCCCEEEECCCEEE----EEECCCEEEEECCCHHH--------HHHHHHHCCCCEEEEEECCC
T ss_conf 3177785686466885554641462486345----32015257651799899--------99999825786389986399
Q ss_pred CCCEEEEECCCCCCC-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 586899815462344-68999874107023320138300027563897035899999999
Q gi|254780676|r 163 PSTTIEVLTPDFLRK-PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR 221 (329)
Q Consensus 163 P~~~IEvLiPDf~G~-~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~ 221 (329)
|+.....|---+.|+ .+.|+.+.++|.++-..= =|-|.+-.+..-+|+|.=|..
T Consensus 151 pelR~~mL~n~~ag~il~~l~~L~~~gI~~h~QI-----VLCPGiNDG~~L~rTi~DL~~ 205 (433)
T TIGR03279 151 PSLRARLLKNPRAGLILEQLKWFQERRLQLHAQV-----VVCPGINDGKHLERTLRDLAQ 205 (433)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEE-----EECCCCCCHHHHHHHHHHHHH
T ss_conf 8999998769957899999999997698798479-----987996766999989999998
No 367
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=26.04 E-value=42 Score=15.23 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 89998741070233201383000275638970358999999999970891670140488764206889999999996699
Q gi|254780676|r 179 HALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329)
Q Consensus 179 ~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329)
+.-..++.++..-|+-.+- ..++-.++-+.=-+-++.+.+.+.++.-.+|-|. -..+++ +-.-++++|-
T Consensus 178 dk~~~v~~~rl~~~G~~l~------~~~~v~dd~~~ia~aI~~~~~~ga~lvi~tgsas---vDpdDv--tP~AI~~aGg 246 (312)
T cd03522 178 DKFGPVLRARLAALGVELV------EQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS---VDPDDV--TPAAIRAAGG 246 (312)
T ss_pred HHHHHHHHHHHHHCCCEEE------EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCC---CCCCCC--HHHHHHHCCC
T ss_conf 5247899999997498465------5795589899999999999868993999448754---288634--1999998188
Q ss_pred CEEECCHHCCCCCC
Q ss_conf 39975022278610
Q gi|254780676|r 259 DFLTMGQYLQPTRK 272 (329)
Q Consensus 259 dilTiGQYL~Ps~~ 272 (329)
.+++.|-=..|...
T Consensus 247 ~i~~~G~PV~PGnm 260 (312)
T cd03522 247 EVIRYGMPVDPGNL 260 (312)
T ss_pred CEEECCCCCCCCCE
T ss_conf 67970576689986
No 368
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=25.75 E-value=54 Score=14.52 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHH-HHHCCCC-EEECCHHCCCCCCCCCCCC---CCCHHHHH
Q ss_conf 58999999999970891670140488764206889999999-9966993-9975022278610078000---23846999
Q gi|254780676|r 212 YFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDD-LRTADVD-FLTMGQYLQPTRKHHKVES---FVTPQDFK 286 (329)
Q Consensus 212 Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~D-Lr~~gvd-ilTiGQYL~Ps~~h~pV~r---yv~P~eF~ 286 (329)
-.-+|++|...+.. ..+. ==|=|+-|||..++.-+-+-. +.+.++| ++++|.+.+....-++-.. |-+.++..
T Consensus 836 m~aAl~~L~~~~~~-~kia-VLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~~~~~~~~~~~~~~~l~ 913 (953)
T PRK11929 836 MRAAIDVLARLPGP-KRAL-VLGDMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHAFGKAARACFASVDEII 913 (953)
T ss_pred HHHHHHHHHCCCCC-CEEE-EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEECCHHHHH
T ss_conf 99999998528799-8699-984850024578999999999999759999999865799998656846578839999999
Q ss_pred H
Q ss_conf 9
Q gi|254780676|r 287 S 287 (329)
Q Consensus 287 ~ 287 (329)
.
T Consensus 914 ~ 914 (953)
T PRK11929 914 A 914 (953)
T ss_pred H
T ss_conf 9
No 369
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=25.69 E-value=54 Score=14.51 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 53258999999999985335868998154623446899987410702332013830002756389703589999999999
Q gi|254780676|r 144 DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVK 223 (329)
Q Consensus 144 ~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK 223 (329)
|-.|-+.|+--+-.=-..+.+..|=.+...+-. .+.+.+++...-.+=.|++.+- -.....+++-.+.+...+
T Consensus 28 pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~-~~~~~R~~a~~~~v~~~~i~~~------~~~~~~~~~~~~~~~~~~ 100 (186)
T pfam03796 28 PSMGKTAFALNIARNAALKQDKPVLFFSLEMSA-EQLAERLLSSESRISSSKLRSG------QLSDEDWERLAEAAGELS 100 (186)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHHHHHHCCCHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_conf 999879999999999999709966875475529-9999999998626765554125------121679999999999985
Q ss_pred HCCCEEEECCCEEEEEEECHHHHHHHHHHHH-HCCCCEEECC--HHCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCE
Q ss_conf 7089167014048876420688999999999-6699399750--222786100780002384-69999999999749624
Q gi|254780676|r 224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLR-TADVDFLTMG--QYLQPTRKHHKVESFVTP-QDFKSYETIAYSKGFLM 299 (329)
Q Consensus 224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr-~~gvdilTiG--QYL~Ps~~h~pV~ryv~P-~eF~~~~~~a~~~Gf~~ 299 (329)
.....+...++ =|.++|...++.+. ..++|++-|- |.++++...-.-.||-.- +-...+|.+|.+.++..
T Consensus 101 ~~~l~i~~~~~------~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~~~~~~r~~~v~~i~~~Lk~lA~e~~i~i 174 (186)
T pfam03796 101 EAPLYIDDTPG------LSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKASKSENRQQEISEISRSLKALAKELNIPV 174 (186)
T ss_pred CCCEEEECCCC------CCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 39868847999------989999999999998559988997489863677888775599999999999999999979918
Q ss_pred EECCCCCCC
Q ss_conf 340483001
Q gi|254780676|r 300 VSASPLTRS 308 (329)
Q Consensus 300 V~SgPlVRS 308 (329)
+...-|=|+
T Consensus 175 i~~sQlNR~ 183 (186)
T pfam03796 175 IALSQLSRA 183 (186)
T ss_pred EEEECCCCC
T ss_conf 997225753
No 370
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=25.30 E-value=54 Score=14.50 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHCCCEEEEEC----CCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEEC--CCCCC-------CHHHHHHHHHCCCH
Q ss_conf 9970775189850----54453453258-99999999998533586899815--46234-------46899987410702
Q gi|254780676|r 125 VRSMKLSHVVITS----VDRDDLDDGGA-QHFAEVISAIRESAPSTTIEVLT--PDFLR-------KPHALEKVVSAKPD 190 (329)
Q Consensus 125 v~~l~Lk~vViTS----V~RDDL~DgGA-~hfa~~I~~Ir~~~P~~~IEvLi--PDf~G-------~~~al~~v~~A~pd 190 (329)
....|.+|+-|-- ...|+-++..+ ......+.+|+..-.+++|-+=+ ..|.| -...+..+++...|
T Consensus 164 L~~aG~~~IQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~~l~~~~vd 243 (332)
T cd03311 164 LYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVD 243 (332)
T ss_pred HHHCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99879988995283575267844268999999999999853898868999876788777654556278999999718998
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-------ECHHHHHHHHHHHHH
Q ss_conf 33201383000275638970358999999999970891670140488764-------206889999999996
Q gi|254780676|r 191 VFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-------ETRNEILQLMDDLRT 255 (329)
Q Consensus 191 V~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-------Et~eEi~e~l~DLr~ 255 (329)
+|..-.-+. | ...|++|+.... +..+++|+= |+.|||.+-+....+
T Consensus 244 ~~~lE~~~~-------r-----~~~~~~l~~~~~-------~k~v~lGvid~~~~~vE~~eev~~rI~~a~~ 296 (332)
T cd03311 244 VFFLEYDNS-------R-----AGGLEPLKELPY-------DKKVGLGVVDVKSPEVESPEEVKDRIEEAAK 296 (332)
T ss_pred EEEEEECCC-------C-----CCCHHHHHHCCC-------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 899983688-------7-----410189984899-------9879866882799998999999999999997
No 371
>PRK12568 glycogen branching enzyme; Provisional
Probab=25.20 E-value=55 Score=14.45 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCC---EEEEEEE----------CH----HHHHHHH
Q ss_conf 70233201383000275638970358999999999970891670140---4887642----------06----8899999
Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSG---IMLGLGE----------TR----NEILQLM 250 (329)
Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSG---lMvGLGE----------t~----eEi~e~l 250 (329)
+.|-|+.-.|..|.--..|.....|.++=+-- ..+...... ++- -=+=||- +. ++++.-+
T Consensus 203 KaDP~a~~~e~~P~taSvv~~~~~~~W~D~~w-m~~r~~~~~--~~plsIYEvHlGSw~~~~~~~~~sY~ela~~Lipyv 279 (730)
T PRK12568 203 KADPVARQTELPPATASVVPSAAAFAWTDAAW-MARRDPAAV--PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYV 279 (730)
T ss_pred ECCCCEEEEECCCCCCEEECCCCCCCCCCHHH-HHCCCCCCC--CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 24861353474886514705887868797789-861677778--898469998664101278998678999999999999
Q ss_pred HHHHHCCCCEEECCHH-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999669939975022-------27861007800023846999999999974962434
Q gi|254780676|r 251 DDLRTADVDFLTMGQY-------LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS 301 (329)
Q Consensus 251 ~DLr~~gvdilTiGQY-------L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~ 301 (329)
++|--.-|+++.|-.+ .|||.-..|-.||=+|++|..+=+.+.+.|+-.+.
T Consensus 280 k~mGyThIELMPi~EhP~d~SWGYQvtg~fAptSRyGtPddfk~fVD~~H~~GIgVIL 337 (730)
T PRK12568 280 QQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9849877997344456887765655655641546788989999999999877987999
No 372
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=25.18 E-value=55 Score=14.44 Aligned_cols=171 Identities=13% Similarity=0.173 Sum_probs=90.1
Q ss_pred EEEE--ECCCCCCCCCCCCCCC------CCCCC-CCHHHH-HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9998--6652235352234467------89988-882357-999999997077518985054453453258999999999
Q gi|254780676|r 88 TFMI--LGAICTRACTFCNVAT------GKPQP-LDPQEP-ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISA 157 (329)
Q Consensus 88 TFMi--lG~~CTR~C~FC~V~~------G~P~~-~D~~EP-~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~ 157 (329)
-.|| -|..|-=+|.||-..- ..|.. .+.+-- .-|.+.+..-....|.++=---.-|. -|...|.+.++-
T Consensus 14 hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms~e~l~~~I~~~~~~~~~~~v~f~~~GGEPlL-~gl~f~~~~v~l 92 (412)
T PRK13745 14 YVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLM-RPLSFYKKAMEL 92 (412)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-CCHHHHHHHHHH
T ss_conf 7982135587588998678816143565677578989999999999996489985899986854456-547899999999
Q ss_pred HHHHCCCCEEEEE--CCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9853358689981--5462344689998741070233201383000275638----970358999999999970891670
Q gi|254780676|r 158 IRESAPSTTIEVL--TPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVR----PGARYFHSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 158 Ir~~~P~~~IEvL--iPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR----p~a~Y~rSL~vL~~aK~~~~~i~T 231 (329)
.++..++..|+.- |-...=+.+-++-+.+-+- .+.=-|.-.+.+.-.-| -+.+|++-+.-++..++.+-+.
T Consensus 93 ~~~~~~g~~i~~siQTNGtLL~dew~~ff~~~~f-~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL~~~~v~f-- 169 (412)
T PRK13745 93 QKKYARGRTIDNCIQTNGTLLTDEWCEFFRENNW-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEW-- 169 (412)
T ss_pred HHHHCCCCEEEEEEEECCEECCHHHHHHHHHCCC-EEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCE--
T ss_conf 9985389846899987787549999999998596-7999625887887402798899877999999999999849964--
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 14048876420688999999999669939975
Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329)
Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329)
..|.|=--.+-+...++.+-|++.|+..+-.
T Consensus 170 -n~L~vv~~~n~~~p~~iY~f~k~lg~~~lQF 200 (412)
T PRK13745 170 -NAMAVVNDFNADYPLDFYNFFKELDCHYIQF 200 (412)
T ss_pred -EEEEEEECHHHHCHHHHHHHHHHCCCCEEEE
T ss_conf -6999981115458899999999759966876
No 373
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=25.18 E-value=51 Score=14.64 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 8882357999999997077518985054453453
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDD 145 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D 145 (329)
.+||+-..++|.-++++ |+---++-|++|+|.+
T Consensus 28 g~~p~~Ay~iA~~i~e~-L~~~~~~~v~~~eir~ 60 (299)
T COG2074 28 GVDPDLAYSIAIEIQEE-LKKEGIRLVTKDEIRE 60 (299)
T ss_pred CCCHHHHHHHHHHHHHH-HHHCCCEEEEHHHHHH
T ss_conf 46825899999999999-9757972761999999
No 374
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.92 E-value=55 Score=14.41 Aligned_cols=181 Identities=10% Similarity=0.103 Sum_probs=80.8
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999749823652578878767508972699986652235352-234467899888823579999999970775189850
Q gi|254780676|r 59 NILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACT-FCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137 (329)
Q Consensus 59 ~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~-FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTS 137 (329)
.+++..+.+-++--+ .-||+|+--..-..-+=..+...+. -+.|-.|- ...+..|-.+.|+.++++|...+.++.
T Consensus 29 ~li~~~Gv~gi~v~G---stGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv-~~~s~~~ai~~a~~a~~~Gad~v~v~~ 104 (288)
T cd00954 29 YLIEKQGVDGLYVNG---STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV-GSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHCCCCEEEECC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC-CCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999877998999793---5425213899999999999999728986087358-864599999999999864978677379
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCCCHHHH-----HCCCC---CCCCCC-
Q ss_conf 5445345-32589999999999853358689981546234---46899987410702332-----01383---000275-
Q gi|254780676|r 138 VDRDDLD-DGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAKPDVFN-----HNLET---VASNYL- 204 (329)
Q Consensus 138 V~RDDL~-DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~pdV~n-----HNiET---V~rLy~- 204 (329)
.----.. |+-..||.+.+...... | + +=--+|...| ..+.+.++.+ -|.|.+ -|+.. +.+.++
T Consensus 105 P~y~~~~~~~~~~~~~~i~~~~~~~-p-i-iiYn~P~~tg~~l~~~~l~~L~~-~~~vvgiK~s~~d~~~~~~~~~~~~~ 180 (288)
T cd00954 105 PFYYKFSFEEIKDYYREIIAAAASL-P-M-IIYHIPALTGVNLTLEQFLELFE-IPNVIGVKFTATDLYDLERIRAASPE 180 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCC-C-E-EEECCCCCCCCCCCHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 9887999799999999999857799-6-5-43217652376899999999963-68978999787999999999997699
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 638970358999999999970891670140488764206889999999996
Q gi|254780676|r 205 MVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRT 255 (329)
Q Consensus 205 ~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~ 255 (329)
..+--..++.- ++... ..|. +|.|-|++--.-+...-+.++..
T Consensus 181 ~~~v~~G~d~~--~~~~~-~~Ga-----~G~i~~~~n~~p~~~~~i~~~~~ 223 (288)
T cd00954 181 DKLVLNGFDEM--LLSAL-ALGA-----DGAIGSTYNVNGKRYRKIFEAFN 223 (288)
T ss_pred CCEEECCCHHH--HHHHH-HCCC-----CEEEECHHHHHHHHHHHHHHHHH
T ss_conf 82461695799--99999-8699-----89995767867999999999998
No 375
>PRK01207 methionine synthase; Provisional
Probab=24.90 E-value=56 Score=14.41 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCCCHHHCCCCC---CCHHHH-----HHHHHH---HHCCCCEEE--CCCCCCCHHHHHCCCCEEE------EEECCCCCC
Q ss_conf 898824500179---986689-----999999---974982365--2578878767508972699------986652235
Q gi|254780676|r 38 MQKPDWIRVRAP---VSSGYK-----ETYNIL---RSRNLTTVC--EEAGCPNIGECWNKNHATF------MILGAICTR 98 (329)
Q Consensus 38 ~~kP~Wlk~~~p---~~~~~~-----~~~~~l---~~~~L~TVC--eeA~CPNi~ECw~~gtATF------MilG~~CTR 98 (329)
.++|+||+.... ...+|. .++..+ .+.+|-.|. -|..=-|+-|-|...-.-| -..|+.|.|
T Consensus 12 fP~p~~l~~~~~~~~~~~~~~e~~~~a~~~~i~~Qe~aGiDiI~~dGE~~R~dmv~yf~~~L~G~~f~g~v~s~~~r~~r 91 (343)
T PRK01207 12 FRKPEYLSREFHKIEGTDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIFYGMVRSFDNRYYR 91 (343)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCHHHHHHHHHCCCEEEECCEEECCCCCCC
T ss_conf 99968999999854484889999999999999999984998875799260242899999858877834745533840267
Q ss_pred CCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-------ECCCCCCCC-CCHHHHHHHHHH-HHHHHC------
Q ss_conf 352-2344678998888235799999999707751898-------505445345-325899999999-998533------
Q gi|254780676|r 99 ACT-FCNVATGKPQPLDPQEPENISWAVRSMKLSHVVI-------TSVDRDDLD-DGGAQHFAEVIS-AIRESA------ 162 (329)
Q Consensus 99 ~C~-FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vVi-------TSV~RDDL~-DgGA~hfa~~I~-~Ir~~~------ 162 (329)
.=. +=.|.. +.|.-.+| .+.|.+.-.-.+|-.+- +|.+|+|.+ .-=|..+|..++ +|+.+-
T Consensus 92 ~p~ivg~v~r--~~p~~v~e-~~~aqs~T~kpvK~~ltGP~TI~~~s~~~~Y~~r~~la~~lA~aln~Ev~~L~~ag~~i 168 (343)
T PRK01207 92 KGSIIDRMER--RSSFHLDE-VEFVADNTKKPIKVPITGPYTMMDWSFNDFYRDRYDLAMEFARIINEELKDIKSAWDRK 168 (343)
T ss_pred CCEEECCCCC--CCCEEHHH-HHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9708730136--88546799-99999835798357606899999754564458999999999999999999999817730
Q ss_pred -CCCE--EEEECCCCCCCHHHHHH
Q ss_conf -5868--99815462344689998
Q gi|254780676|r 163 -PSTT--IEVLTPDFLRKPHALEK 183 (329)
Q Consensus 163 -P~~~--IEvLiPDf~G~~~al~~ 183 (329)
.|++ |.+==|-|....+.++-
T Consensus 169 ~~G~k~~IQiDEPa~~~~~~~~~~ 192 (343)
T PRK01207 169 SPGRKLEIQIDEPATTTHPDEMDI 192 (343)
T ss_pred CCCCCCEEECCCCHHHCCHHHHHH
T ss_conf 157763387567411157759999
No 376
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=24.89 E-value=56 Score=14.41 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=10.0
Q ss_pred HHHHHHHCCCCEEECCHHC
Q ss_conf 9999996699399750222
Q gi|254780676|r 249 LMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 249 ~l~DLr~~gvdilTiGQYL 267 (329)
.+.++.+.|+|.+.|..=.
T Consensus 243 ~l~~~~~~~~d~isiD~~~ 261 (335)
T cd00717 243 LLEDLAQLGADVVGLDWRV 261 (335)
T ss_pred HHHHHHHCCCCEEECCCCC
T ss_conf 9999986398777427778
No 377
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=24.85 E-value=56 Score=14.40 Aligned_cols=207 Identities=17% Similarity=0.215 Sum_probs=100.2
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE----CCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 269998665223535223446789988882357999999997077518985----054453453258999999999985-
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVIT----SVDRDDLDDGGAQHFAEVISAIRE- 160 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViT----SV~RDDL~DgGA~hfa~~I~~Ir~- 160 (329)
.---||+|..||- .+-.+.|...|+ .++|.--||- +-.++ -.-+.+.-|.+.|+..-.
T Consensus 85 ~P~~ivv~~SCta-------------~liQedp~~la~---~~~l~~~vi~~e~~~y~~~-E~~aAd~t~~qlVr~~~~~ 147 (524)
T PRK02910 85 QPDLIVVGPSCTA-------------ELLQEDPGGLAK---GAGLPIPVLVLELNAYRVK-ENWAADETFYQLVRALAKK 147 (524)
T ss_pred CCCEEEECCHHHH-------------HHHHHCCCCCCC---CCCCCCCEEECCCCCCCHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9857998540069-------------887546112233---4699986445557721056-7888899999999998520
Q ss_pred -------HCCCCEEEEECCCCCC-----CHHHHHHHHH-CCCHH-----HHHCCCCCCCCCC---CCCCCCHHHHHHH-H
Q ss_conf -------3358689981546234-----4689998741-07023-----3201383000275---6389703589999-9
Q gi|254780676|r 161 -------SAPSTTIEVLTPDFLR-----KPHALEKVVS-AKPDV-----FNHNLETVASNYL---MVRPGARYFHSLR-L 218 (329)
Q Consensus 161 -------~~P~~~IEvLiPDf~G-----~~~al~~v~~-A~pdV-----~nHNiETV~rLy~---~VRp~a~Y~rSL~-v 218 (329)
....-++-+|-|-..| +...|+++++ -|.+| ++-.++...||-. .|.+--.+.++.- .
T Consensus 148 ~~~~~~~~t~~PsvNIlGpt~LGF~~r~D~~Ei~RLl~~lGi~VNvV~P~Gas~~dl~rL~~A~~Nv~lYrE~g~~aa~~ 227 (524)
T PRK02910 148 AARLPQPKTARPSVNLLGPTALGFHNRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAAEY 227 (524)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEECCHHHHHHHHHH
T ss_conf 56677777889636760777567687788999999998759668898049999788851020407464258777999999
Q ss_pred HHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC-----CCCCCCCCCCCCCCHHHH--------
Q ss_conf 9999970891670140488764206889999999996699399750222-----786100780002384699--------
Q gi|254780676|r 219 LQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL-----QPTRKHHKVESFVTPQDF-------- 285 (329)
Q Consensus 219 L~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL-----~Ps~~h~pV~ryv~P~eF-------- 285 (329)
|+ |++| ++.-+...+|++.|.+=|.++.+-| |.|--..++|. .||+.-| ..|=+..+-|
T Consensus 228 Le--~~fg--~P~~~~~PiGv~~T~~flrel~~~l---g~~~~~~~~~i~~~~~~~s~~~W-~srSvD~~~ltgKr~fVf 299 (524)
T PRK02910 228 LE--REFG--MPYVTTVPIGVGATARFIREVAELL---NLDGADLEAFILDELSAPSRLPW-FSRSVDSTYLTGKRVFVF 299 (524)
T ss_pred HH--HHHC--CCEECCCCCCHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHCCCCCCCCE-EEECCCCHHHCCCEEEEE
T ss_conf 99--8858--9701034754179999999999996---89964225555442014233530-121365012136447996
Q ss_pred ------HHHHHHH-HHCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf ------9999999-974962434048300103189999999
Q gi|254780676|r 286 ------KSYETIA-YSKGFLMVSASPLTRSSYHAGDDFLRL 319 (329)
Q Consensus 286 ------~~~~~~a-~~~Gf~~V~SgPlVRSSY~A~e~~~~~ 319 (329)
.-..+++ .+|||..|-+|-+-|. +|+..-..+
T Consensus 300 GDaTha~a~~kil~~ElG~~vvg~GTY~r~--~Ar~~r~~~ 338 (524)
T PRK02910 300 GDATHAVAAAKILRDELGFEVVGAGTYLRE--DARWVRAAA 338 (524)
T ss_pred CCCHHHHHHHHHHHHHHCEEEEEECCCHHH--HHHHHHHHH
T ss_conf 560799999999888648078731355187--789999999
No 378
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.55 E-value=56 Score=14.37 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 25899999999998533586899815462344689998741070233201383000275638970358999999999970
Q gi|254780676|r 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL 225 (329)
Q Consensus 146 gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~ 225 (329)
|+-+-|-..|.+++.--.+..|.+++.|= -+-.+|++-.+++ |.|+-=--+..-.+..|++ ++.+..++.
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~-~~A~~lerA~~~g-------Ipt~~~~~k~~~~r~~~d~--~l~~~l~~~ 78 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDK-ADAYALERAAKAG-------IPTVVLDRKEFPSREAFDR--ALVEALDEY 78 (200)
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECC-CCCHHHHHHHHCC-------CCEEEECCCCCCCHHHHHH--HHHHHHHHC
T ss_conf 79655999999876489881799999579-7778999999849-------9889744456787789999--999999852
Q ss_pred CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCC
Q ss_conf 891670140488764206889999999996699399750222786
Q gi|254780676|r 226 DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPT 270 (329)
Q Consensus 226 ~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps 270 (329)
++++..-.|.|-=||.+.-+-++. .||.|---|-|.
T Consensus 79 ~~dlvvLAGyMrIL~~~fl~~~~g---------rIlNIHPSLLP~ 114 (200)
T COG0299 79 GPDLVVLAGYMRILGPEFLSRFEG---------RILNIHPSLLPA 114 (200)
T ss_pred CCCEEEECCHHHHCCHHHHHHHHC---------CEEECCCCCCCC
T ss_conf 999999866477759999997326---------517417531358
No 379
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=24.52 E-value=56 Score=14.36 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf 1404887642068899999999966993997502
Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329)
Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329)
|--+++-=|...+++.+....|++.|+.++.||=
T Consensus 105 kvvvllTDG~s~~~~~~~a~~lr~~Gi~v~~VGi 138 (164)
T cd01472 105 KVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGV 138 (164)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 5999983799864088999999988988999978
No 380
>KOG1494 consensus
Probab=24.38 E-value=57 Score=14.34 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCEEEEE-------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-------CCCCC----------
Q ss_conf 99999997077518985-------0544534532589999999999853358689981-------54623----------
Q gi|254780676|r 120 NISWAVRSMKLSHVVIT-------SVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVL-------TPDFL---------- 175 (329)
Q Consensus 120 rvA~av~~l~Lk~vViT-------SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvL-------iPDf~---------- 175 (329)
.+..|++. -.-|||- ..+||||-+--|+.......+|-+.+|+..|-+. +|=+.
T Consensus 89 ~L~~al~~--advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~yd 166 (345)
T KOG1494 89 GLENALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYD 166 (345)
T ss_pred HHHHHHCC--CCEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 78987538--9789963899899998577766414479999999998659612167660763342058999999738788
Q ss_pred -----C--------CHHHHHHHHHCCC-------HHHHHCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHCCCEE-EEC
Q ss_conf -----4--------4689998741070-------233201383000275638970358--9999999999708916-701
Q gi|254780676|r 176 -----R--------KPHALEKVVSAKP-------DVFNHNLETVASNYLMVRPGARYF--HSLRLLQRVKELDPLI-FTK 232 (329)
Q Consensus 176 -----G--------~~~al~~v~~A~p-------dV~nHNiETV~rLy~~VRp~a~Y~--rSL~vL~~aK~~~~~i-~TK 232 (329)
| -..-+..+..-.| -|=+|-=+|.=-|.....|...+. .-=.+..++...|-++ ..|
T Consensus 167 pkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AK 246 (345)
T KOG1494 167 PKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAK 246 (345)
T ss_pred CCCEECEEHHHHHHHHHHHHHHHCCCCHHCCCCCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 65230300212354888999871799001377643437678568540014787655899999999998871773677703
Q ss_pred CC
Q ss_conf 40
Q gi|254780676|r 233 SG 234 (329)
Q Consensus 233 SG 234 (329)
-|
T Consensus 247 aG 248 (345)
T KOG1494 247 AG 248 (345)
T ss_pred CC
T ss_conf 68
No 381
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072 The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..
Probab=24.26 E-value=50 Score=14.71 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=45.8
Q ss_pred EEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 4887642068899999999966993997502227861007800023846999999999974962434048
Q gi|254780676|r 235 IMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 235 lMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
.|-|=||..-|.++.|.|++.-=-+.+-|-=|| |+.---|.+||+. |..+-.+.+=..|+-+|
T Consensus 5 GITGsGd~L~Et~~im~~vK~~y~~rV~~~vfL--SK~G~~VvKyY~L-----~~~L~~~F~~~~Ve~~A 67 (176)
T TIGR02699 5 GITGSGDKLPETVEIMKDVKKKYGDRVEIDVFL--SKAGEQVVKYYKL-----WDKLEEDFDDLRVEINA 67 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEE--ECCCCEEEEHHHH-----HHHHHHHCCCEEEEECC
T ss_conf 202899841678888899752059878999986--0586745316676-----78886310640587078
No 382
>pfam09162 Tap-RNA_bind Tap, RNA-binding. Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element.
Probab=24.21 E-value=16 Score=18.15 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=39.0
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 82450017998668999999997498236525788787675089726999866522353522344678998888235799
Q gi|254780676|r 41 PDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN 120 (329)
Q Consensus 41 P~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~r 120 (329)
-.|.|+.+|.|.+|.+ .-+++ .|.+.|...--|--..+-.. .|.|-+ |-.+
T Consensus 5 ~~WfkVtIP~G~KYdK-~wLl~--~iq~~c~vpF~Pv~fhy~~~-~a~FfV-------------------------~D~~ 55 (88)
T pfam09162 5 KNWFKVTIPHGKKYDK-KWLLN--SIQSLCSVPFTPVEFHYDGM-RAQFFV-------------------------EDSR 55 (88)
T ss_pred CCEEEEECCCCCCCCH-HHHHH--HHHHHCCCCCEEEEEEEECC-EEEEEE-------------------------CCHH
T ss_conf 7628998548740379-99999--99973998725478898187-889984-------------------------8879
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999970775
Q gi|254780676|r 121 ISWAVRSMKLS 131 (329)
Q Consensus 121 vA~av~~l~Lk 131 (329)
+|+|++.++-+
T Consensus 56 ~A~aL~~~s~k 66 (88)
T pfam09162 56 TASALKQVSRK 66 (88)
T ss_pred HHHHHHHCCCE
T ss_conf 99999867881
No 383
>PRK06270 homoserine dehydrogenase; Provisional
Probab=24.11 E-value=57 Score=14.31 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=71.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHH---HHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 99985335868998154623446899---987410702332013830002756389703589999999999708916701
Q gi|254780676|r 156 SAIRESAPSTTIEVLTPDFLRKPHAL---EKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK 232 (329)
Q Consensus 156 ~~Ir~~~P~~~IEvLiPDf~G~~~al---~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK 232 (329)
..++....++.||+-..|..+-+.+. ...+.+|-+|..-|=.-. |.+-+ ++.+.+++.+..+.--
T Consensus 83 ~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~VVTANK~~l----------a~~~~--eL~~lA~~~g~~~~yE 150 (342)
T PRK06270 83 EVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPL----------ALAYK--ELKELAKENGVCFRYE 150 (342)
T ss_pred HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCHHH----------HHHHH--HHHHHHHHCCCEEEEE
T ss_conf 98427799989993044677748899999999977994999887178----------98899--9999999729849985
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 404887642068899999999966993997502227861007800023846999999999974962
Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329)
Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329)
+..+-|+= |+.+++++. .|.+|..|---|--|.+.+-=+-+-.-..|++-=+.|.++||.
T Consensus 151 asVggGlP-----iI~~l~~~l-~gd~I~~I~GIlnGT~nyIL~~m~~~g~~F~~alkeAq~lGya 210 (342)
T PRK06270 151 ATVGGAMP-----IIRLAKETL-AGNDIKSIKGILNGTTNYILTRMEEEGLSYDQALKEAQELGYA 210 (342)
T ss_pred EEECCCCC-----CHHHHHHHC-CCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 44111535-----389898530-7888458998867715898888775599899999999973998
No 384
>PRK13113 consensus
Probab=24.01 E-value=58 Score=14.30 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=16.3
Q ss_pred ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf 0140488764206889999999996699399750222
Q gi|254780676|r 231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329)
Q Consensus 231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329)
|+.=+.+|.|=...|-+..+. ..+|-+-+|-.+
T Consensus 204 t~~Pv~vGFGI~~~e~~~~~~----~~ADGvIVGSa~ 236 (263)
T PRK13113 204 TDLPVIVGFGITTPEAAQAIA----GVADGCVVGSAI 236 (263)
T ss_pred CCCCEEEECCCCCHHHHHHHH----CCCCEEEECHHH
T ss_conf 799889983789989999997----339999986899
No 385
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.99 E-value=58 Score=14.29 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf 89988882357999999997-07751898505
Q gi|254780676|r 108 GKPQPLDPQEPENISWAVRS-MKLSHVVITSV 138 (329)
Q Consensus 108 G~P~~~D~~EP~rvA~av~~-l~Lk~vViTSV 138 (329)
|--..+..+|=.++.+++.+ .+=+--||..|
T Consensus 46 GE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gv 77 (296)
T PRK03620 46 GEFFSLTPDEYSQVVRAAVEACAGRVPVIAGA 77 (296)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 13434899999999999999838973598257
No 386
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.87 E-value=58 Score=14.28 Aligned_cols=146 Identities=17% Similarity=0.237 Sum_probs=88.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999997077518985054453453258999999999985335868998154623446899987410702332013830
Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV 199 (329)
Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV 199 (329)
-+-++.+..|-+-++|.--+. .|-..--+...|.+....|+..|-+.+|- | +.++. .++|.
T Consensus 50 G~~~aLk~~G~~n~~i~~~na----~~~~~~a~~iarql~~~~~dviv~i~tp~------A-q~~~s--------~~~~i 110 (322)
T COG2984 50 GVKEALKDAGYKNVKIDYQNA----QGDLGTAAQIARQLVGDKPDVIVAIATPA------A-QALVS--------ATKTI 110 (322)
T ss_pred HHHHHHHHCCCCCEEEEEECC----CCCHHHHHHHHHHHHCCCCCEEEECCCHH------H-HHHHH--------HCCCC
T ss_conf 789999864866728996247----78857899999996147996799617789------9-99998--------46798
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCC
Q ss_conf 00275638970358999999999970891670140488764206889999999996699399750222786100780002
Q gi|254780676|r 200 ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESF 279 (329)
Q Consensus 200 ~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ry 279 (329)
|..|..|-...+.+ + .++ +-.-+|.+.|+-..- .+-+.++-.+..=-+.=+||=|+.|+...
T Consensus 111 PVV~aavtd~v~a~----L---v~~----~~~pg~NvTGvsD~~-~v~q~i~lik~~~Pnak~Igv~Y~p~E~n------ 172 (322)
T COG2984 111 PVVFAAVTDPVGAK----L---VKS----LEQPGGNVTGVSDLL-PVAQQIELIKALLPNAKSIGVLYNPGEAN------ 172 (322)
T ss_pred CEEEECCCCHHHCC----C---CCC----CCCCCCCEEECCCCC-HHHHHHHHHHHHCCCCEEEEEEECCCCCC------
T ss_conf 87997257633235----8---764----447888436237751-69999999998678870699995798866------
Q ss_pred CCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 384699999999997496243404
Q gi|254780676|r 280 VTPQDFKSYETIAYSKGFLMVSAS 303 (329)
Q Consensus 280 v~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329)
+-..-++++++|...|+.-|+++
T Consensus 173 -s~~l~eelk~~A~~~Gl~vve~~ 195 (322)
T COG2984 173 -SVSLVEELKKEARKAGLEVVEAA 195 (322)
T ss_pred -CHHHHHHHHHHHHHCCCEEEEEE
T ss_conf -08999999999987798899983
No 387
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.70 E-value=58 Score=14.26 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=32.9
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r 133 VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329)
Q Consensus 133 vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329)
.||+..++|. .=+-++-.+|+.||++.|=+.+- +.+.++++..||+|..
T Consensus 269 ~VI~~~~~Da-------~NvfivLTAR~LnP~v~IVA~a~----~~en~~KlrrAGAD~V 317 (356)
T PRK10537 269 AILALRDNDA-------DNAFVVLAAKEMSSDVKTVAAVN----DSKNLEKIKRVHPDMI 317 (356)
T ss_pred EEEECCCCCH-------HHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHHCCCEE
T ss_conf 9888078777-------89999984998689976999967----6757999986289999
No 388
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=23.66 E-value=58 Score=14.25 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=57.5
Q ss_pred HHHHHHHHHCCCEEEE--------ECCCCCCC---CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 9999999707751898--------50544534---532589999999999853358689981546234468999874107
Q gi|254780676|r 120 NISWAVRSMKLSHVVI--------TSVDRDDL---DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK 188 (329)
Q Consensus 120 rvA~av~~l~Lk~vVi--------TSV~RDDL---~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329)
-+|++..+.|..+..| |..+|-=+ .|-|-.--...-+.+++.||++.|++. ++|... +.+..+++..
T Consensus 25 ~~a~~LarsGVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~-~~~~~~-~n~~~ll~~~ 102 (231)
T cd00755 25 WAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV-EEFLTP-DNSEDLLGGD 102 (231)
T ss_pred HHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEE-HHHCCH-HHHHHHHCCC
T ss_conf 99999998099759997199904544443301656336997289999999987999889986-251599-8999984547
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 0233201383000275638970358999999999970891670
Q gi|254780676|r 189 PDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT 231 (329)
Q Consensus 189 pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T 231 (329)
+|++-- -.-++.-.+.++.++++.+..+.+
T Consensus 103 ~D~VvD-------------aiD~~~~K~~l~~~c~~~~iplIs 132 (231)
T cd00755 103 PDFVVD-------------AIDSIRAKVALIAYCRKRKIPVIS 132 (231)
T ss_pred CCEEEE-------------CCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 777853-------------442487799999999982990899
No 389
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.54 E-value=59 Score=14.23 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCHHHH----HHHHHHHHHH-CCCEEE-----ECCCEEEEEEECHHHHHHHHHHHHHCC-CCEEECC--HHCCCCCCCCC
Q ss_conf 703589----9999999997-089167-----014048876420688999999999669-9399750--22278610078
Q gi|254780676|r 209 GARYFH----SLRLLQRVKE-LDPLIF-----TKSGIMLGLGETRNEILQLMDDLRTAD-VDFLTMG--QYLQPTRKHHK 275 (329)
Q Consensus 209 ~a~Y~r----SL~vL~~aK~-~~~~i~-----TKSGlMvGLGEt~eEi~e~l~DLr~~g-vdilTiG--QYL~Ps~~h~p 275 (329)
+.+++. .++|++.+++ .+++.+ +-...-.+.|.+.+|.+++++.|.+.| ||+|.+- .+-.+......
T Consensus 192 GGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~ 271 (363)
T COG1902 192 GGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVS 271 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 88589998899999999999729886699997745467788888999999999998558844799603644578874446
Q ss_pred CCCCCCHHHHHHHHH-HHHHCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 000238469999999-99974962434048300103189999
Q gi|254780676|r 276 VESFVTPQDFKSYET-IAYSKGFLMVSASPLTRSSYHAGDDF 316 (329)
Q Consensus 276 V~ryv~P~eF~~~~~-~a~~~Gf~~V~SgPlVRSSY~A~e~~ 316 (329)
. |.-|..+.+ +....+...+++|- .+|-..|.+..
T Consensus 272 ~-----~~~~~~~a~~i~~~~~~pvi~~G~-i~~~~~Ae~~l 307 (363)
T COG1902 272 G-----PGYQVEFAARIKKAVRIPVIAVGG-INDPEQAEEIL 307 (363)
T ss_pred C-----CCHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHH
T ss_conf 6-----412478999998860787798689-79999999999
No 390
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.45 E-value=47 Score=14.91 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89999999996699399750222786100780002384699999999997496243
Q gi|254780676|r 245 EILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 245 Ei~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329)
+++.-+.+.. ..--+-||--|.+||.+..||..||.---|+ ++. +-|..++
T Consensus 506 ~l~~~~~e~A-~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~-l~~---eng~~f~ 556 (574)
T COG3882 506 RLMNSLEEQA-LSEGINTIRGYYIPTEKNAPVSDFYERMGFK-LKG---ENGNKFY 556 (574)
T ss_pred HHHHHHHHHH-HHCCCCEEEEEECCCCCCCCHHHHHHHHCHH-HCC---CCCCCCC
T ss_conf 9999999999-8646322235864643578389999873500-013---5687534
No 391
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.44 E-value=59 Score=14.22 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCCEEEEEC---------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 775189850---------5445345325899999999998533586899815
Q gi|254780676|r 129 KLSHVVITS---------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329)
Q Consensus 129 ~Lk~vViTS---------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329)
+-..||||. -+|+||-..-+..+.+.+++|++.+|+..+=+.+
T Consensus 68 ~aDiVVitaG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 68 DADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999998677765899983588888857899999999986139974999847
No 392
>pfam05999 Herpes_U5 Herpesvirus U5-like family. This family of Herpesvirus includes U4, U5 and UL27.
Probab=23.43 E-value=37 Score=15.70 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHH-HCCCE
Q ss_conf 8882357999999997-07751
Q gi|254780676|r 112 PLDPQEPENISWAVRS-MKLSH 132 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~-l~Lk~ 132 (329)
.++.+|-.++-..|.+ ++..+
T Consensus 169 HLs~~~q~~l~~~v~rDLg~s~ 190 (447)
T pfam05999 169 HLDEDQQVRLRAEISRDLGFSM 190 (447)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6998999999999877761999
No 393
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.31 E-value=59 Score=14.21 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHC
Q ss_conf 8882357999999997077518985054453453-2589999999999853358689981546234---46899987410
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDD-GGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSA 187 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D-gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A 187 (329)
.....|-...|+.++++|...+.+...----..+ +=..||.+...+. -.| + +=--.|.+.| ..+.+.++.+
T Consensus 75 ~~s~~~~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~~--~~p-i-~iYn~P~~~g~~l~~~~l~~L~~- 149 (281)
T cd00408 75 ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS--DLP-V-ILYNIPGRTGVDLSPETIARLAE- 149 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC--CCC-E-EEEECCCCCCCCCCHHHHHHHHC-
T ss_conf 788999999999999759998998799777899999999999998555--997-7-99727753167768999999848-
Q ss_pred CCHHH
Q ss_conf 70233
Q gi|254780676|r 188 KPDVF 192 (329)
Q Consensus 188 ~pdV~ 192 (329)
-|.|.
T Consensus 150 ~~nv~ 154 (281)
T cd00408 150 HPNIV 154 (281)
T ss_pred CCCEE
T ss_conf 99989
No 394
>PRK09222 isocitrate dehydrogenase; Validated
Probab=23.13 E-value=60 Score=14.18 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHCCCE--EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8235799999999707751--89850544534532589999999999853358689981546
Q gi|254780676|r 114 DPQEPENISWAVRSMKLSH--VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD 173 (329)
Q Consensus 114 D~~EP~rvA~av~~l~Lk~--vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD 173 (329)
...+-+|+++...++..++ --+|||+.+..-......|-+++++|.+..|++..+-++=|
T Consensus 147 Tr~g~eRI~r~AFe~A~~~~RkkVT~v~KaNVlk~t~gLfr~v~~eVa~eYPdVe~~~~~VD 208 (482)
T PRK09222 147 SRSGSEKIIRYAFEYARKNNRKKVTCLTKDNIMKMTDGIFHKVFNEIAKEYPDIEAEHYIID 208 (482)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 54564379999999999709980799975762066777999999999867798646887777
No 395
>PRK04435 hypothetical protein; Provisional
Probab=22.97 E-value=60 Score=14.16 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=24.3
Q ss_pred EEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 4887642068899999999966993997502227
Q gi|254780676|r 235 IMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 235 lMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
+.+=|--..--+-+++.-+.+.+++||||.|=..
T Consensus 71 l~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~IP 104 (146)
T PRK04435 71 LSLLLEDRVGTLSKVLNVIAELGGNILTINQSIP 104 (146)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999838875799999999976997899716887
No 396
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical); InterPro: IPR004617 Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (3.6.1.41 from EC). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase .; GO: 0008803 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity.
Probab=22.95 E-value=40 Score=15.40 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=40.0
Q ss_pred EECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHH
Q ss_conf 81546234468999874107023320138300027563897035899999999997089167014048876420688999
Q gi|254780676|r 169 VLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQ 248 (329)
Q Consensus 169 vLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e 248 (329)
-||.|.+|--+.+..+++-- -|+=. -..||=.===-|.=+.||++||++|+.|-.+. +=||--+=-++.
T Consensus 4 Yl~GDl~GCYDEl~~LL~~V--~F~P~---~D~LyL~GDLvARG~~SL~~LR~VKSLG~~~r------~VLgNHDLHl~a 72 (280)
T TIGR00668 4 YLIGDLHGCYDELQLLLERV--EFDPA---QDTLYLTGDLVARGDGSLEVLRYVKSLGNAAR------LVLGNHDLHLIA 72 (280)
T ss_pred EEEECCCCCHHHHHHHHHHH--CCCCC---CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHH------HHHHCCHHHHHH
T ss_conf 57625443178999999862--47888---65467851133127405778888875446888------887202089999
Q ss_pred HHHHHHHC
Q ss_conf 99999966
Q gi|254780676|r 249 LMDDLRTA 256 (329)
Q Consensus 249 ~l~DLr~~ 256 (329)
++.++..+
T Consensus 73 ~~~gi~~~ 80 (280)
T TIGR00668 73 VALGIKKV 80 (280)
T ss_pred HHHCCCCC
T ss_conf 98222026
No 397
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=22.79 E-value=61 Score=14.14 Aligned_cols=143 Identities=10% Similarity=0.077 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHCCCH
Q ss_conf 882357999999997077518985054453453258999999999985335--868998154623446899987410702
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAP--STTIEVLTPDFLRKPHALEKVVSAKPD 190 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P--~~~IEvLiPDf~G~~~al~~v~~A~pd 190 (329)
-+++.=.++|+|....|..|.=+|+++ -|....+-|+.|-++.- ..+=|+|+= -+...+.++-.+++++|
T Consensus 17 Fs~e~r~eIAkALdd~GV~~IE~g~P~-------vS~d~~~~ik~i~~L~~~G~l~a~iv~H-sra~~~D~~~a~~~~Vd 88 (355)
T TIGR02146 17 FSTEQRVEIAKALDDIGVDYIEVGHPA-------VSPDIRKDIKLIASLGKEGLLKAKIVTH-SRAVLDDIEVAVETEVD 88 (355)
T ss_pred CCHHHHHHHHHHHHHHCCEEEECCCCC-------CCHHHHHHHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCC
T ss_conf 177789999876323181057248875-------5477899999998338887600355677-89999998776422786
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 33201383000275638970358----999999999970891670140488764206889999999996699399750
Q gi|254780676|r 191 VFNHNLETVASNYLMVRPGARYF----HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 191 V~nHNiETV~rLy~~VRp~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329)
.+.==.=|+.-+- .-+.+-+-. +--+++.|+|+.||.+..-=.===|.=-.+++++++.+.-++.|||.+.|-
T Consensus 89 ~i~~~~G~S~~~l-~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~L~~v~k~a~~~~vDRVsiA 165 (355)
T TIGR02146 89 RIDVFFGVSKLLL-KYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDDLLKVYKTAKEAGVDRVSIA 165 (355)
T ss_pred EEEEEEECHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5787430058885-1025778899999999999999724882478864788851218999999999976188856751
No 398
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=22.66 E-value=61 Score=14.12 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHH-HHHHC-CCEEEEECCCCCCCCCCH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 8882357999999-99707-751898505445345325-89999999999853358689981546234468999874107
Q gi|254780676|r 112 PLDPQEPENISWA-VRSMK-LSHVVITSVDRDDLDDGG-AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK 188 (329)
Q Consensus 112 ~~D~~EP~rvA~a-v~~l~-Lk~vViTSV~RDDL~DgG-A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329)
++.+.+-.++... ...++ ...+||+. -||.|= ...|++.++..|+....+.+. + ..++|...+.+.
T Consensus 112 ~i~~~~~~~l~~~~~~~~~~~d~vvisG----slp~g~~~~~~~~~~~~a~~~g~~vvlD---~----~~~~l~~~l~~~ 180 (312)
T PRK09513 112 EVTPADWERFVTDSLSWLGQFDMVAVSG----SLPRGVSPEAFTDWMTRLRSQCPCIIFD---S----SREALVAGLKAA 180 (312)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCEEEEE---C----CCHHHHHHHHHC
T ss_conf 8999999999999986564489999957----8899999899999999998679999998---9----708999888619
Q ss_pred CHHHHHCCCCCCCCC
Q ss_conf 023320138300027
Q gi|254780676|r 189 PDVFNHNLETVASNY 203 (329)
Q Consensus 189 pdV~nHNiETV~rLy 203 (329)
|+++-=|.+-...|+
T Consensus 181 p~likPN~~El~~l~ 195 (312)
T PRK09513 181 PWLVKPNRRELEIWA 195 (312)
T ss_pred CCEEECCHHHHHHHH
T ss_conf 958921888999984
No 399
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=22.62 E-value=61 Score=14.11 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998541
Q gi|254780676|r 315 DFLRLKNNRRQH 326 (329)
Q Consensus 315 ~~~~~~~~~~~~ 326 (329)
.|.++..-|+++
T Consensus 458 ~yr~Li~lRk~~ 469 (551)
T PRK10933 458 TYQKLIALRKQE 469 (551)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998639
No 400
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=22.46 E-value=62 Score=14.09 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=57.8
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC--------CCCC------C
Q ss_conf 7675089726999866522353522344678998888235799999999707751898505--------4453------4
Q gi|254780676|r 78 IGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSV--------DRDD------L 143 (329)
Q Consensus 78 i~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV--------~RDD------L 143 (329)
+.|+-..||-||+=+++..-+ .-.-.+.++..+++++..+|++-++ .-+ +.+. -
T Consensus 113 ~~E~l~sG~TT~~d~~~~~~~-----------~~~~~~~~~~~~~~a~~e~GiR~~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (480)
T PRK06151 113 FAQLLRNGITTAAPIASLFYR-----------QWAETVAEFAAAAEAAGELGLRVYL-GPAYRSGGSVLEADGRLRPVFD 180 (480)
T ss_pred HHHHHHCCCCEEEECCCCCCC-----------CCCCCHHHHHHHHHHHHHHCCEEEE-ECCCCCCCCEECCCCCCCCCCC
T ss_conf 999996598887522332235-----------6554455499999999980986999-5242277620036887788641
Q ss_pred CCCHHHHHHHHHHHHHHHCC--CCEEE-EECCCCCC--CHHHHHHHHHC----CCHHHHHCCCCCC
Q ss_conf 53258999999999985335--86899-81546234--46899987410----7023320138300
Q gi|254780676|r 144 DDGGAQHFAEVISAIRESAP--STTIE-VLTPDFLR--KPHALEKVVSA----KPDVFNHNLETVA 200 (329)
Q Consensus 144 ~DgGA~hfa~~I~~Ir~~~P--~~~IE-vLiPDf~G--~~~al~~v~~A----~pdV~nHNiETV~ 200 (329)
.+.+...+.++.+-+++... +-.|. .+.|.+-. ..+.++.+.+. +.-+--|--|+..
T Consensus 181 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ap~~~~t~s~e~l~~~~~~A~e~g~~i~~Hl~E~~~ 246 (480)
T PRK06151 181 EARGLAGLDEAIAFIKRVDGAHNDLVRGMLAPDRVETCTVDLLRRTAAAARELGVPVRLHCCQSVI 246 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 455888999999999985145898278998378777789999999999999769968986036715
No 401
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=22.46 E-value=62 Score=14.09 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC--CHHHH
Q ss_conf 32589999999999853358689981546234468999874107--02332
Q gi|254780676|r 145 DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK--PDVFN 193 (329)
Q Consensus 145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~--pdV~n 193 (329)
+++..-+.+.+.++-+.+ +++|++..+|+....+.+..-..+| ||||-
T Consensus 50 ~~~~~~i~~~~~kfek~~-gi~V~i~~~~~~d~~~~~~~~~paGqgpDi~~ 99 (420)
T COG2182 50 EKEVDGIKEAAAKFEKET-GIKVKIVEEDYDDLLEKFLLAAPAGQGPDIFV 99 (420)
T ss_pred CHHHHHHHHHHHHHHHHH-CCEEEEEECCCCCHHHHHHCCCCCCCCCCEEE
T ss_conf 306799999999999987-97589994675048888601377788897798
No 402
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.44 E-value=62 Score=14.09 Aligned_cols=164 Identities=22% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHHCCC-EEEEECCCCCCCC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCH
Q ss_conf 8823579999999970775-1898505445345-3258999999999985335868998154623446899987410702
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLS-HVVITSVDRDDLD-DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPD 190 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk-~vViTSV~RDDL~-DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pd 190 (329)
.|-.|-.+.-+.+++|++. |++++.-||=-.. -|+-.-.-+.|++||+..-.+.=+ +-||=+|--
T Consensus 10 ~~D~E~e~flE~lqr~~~~~~v~~~g~n~vkV~v~G~~~eireair~irel~~~vr~r-~~~~~~~ly------------ 76 (204)
T COG3286 10 FDDVEKEEFLERLQRMVKDTYVEIRGKNRVKVNVFGTKDEIREAIRAIRELHRRVRRR-LYPDRQGLY------------ 76 (204)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEE------------
T ss_conf 7838999999999971753489980575699998666378999999999999999864-256765258------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC--CEEECCHHC
Q ss_conf 33201383000275638970358999999999-970891670140488764206889999999996699--399750222
Q gi|254780676|r 191 VFNHNLETVASNYLMVRPGARYFHSLRLLQRV-KELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV--DFLTMGQYL 267 (329)
Q Consensus 191 V~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv--dilTiGQYL 267 (329)
|-.|++.. |.=.-+.++|..| |-.|-.+-.++|- +----.+.|++++...|.++=- .+.+++
T Consensus 77 -------~l~~~~~~----a~p~Vp~~vl~daLk~~GyrVevr~~~-l~T~ap~~ev~E~vreLse~~~E~~~~~lt--- 141 (204)
T COG3286 77 -------TLYRIFEE----ASPNVPPDVLIDALKLLGYRVEVRGGE-LKTNAPWSEVVELVRELSEVYREARFQPLT--- 141 (204)
T ss_pred -------EEHHHHHH----HCCCCCHHHHHHHHHHCCCEEEEECCE-EECCCCHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf -------63767775----068998799999998579357860761-214798999999999999999998725344---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 7861007800023846999999999974962434048
Q gi|254780676|r 268 QPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 268 ~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
+|.++-.-...|+.--.-+...+.|.+.||....++-
T Consensus 142 ~~vrklVv~~S~~~~~~~dd~~eeave~Gll~e~E~~ 178 (204)
T COG3286 142 RQVRKLVVAVSIVYGLDPDDAAEEAVELGLLEEGEDG 178 (204)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 0245563211567289879999999983222215304
No 403
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=22.31 E-value=62 Score=14.07 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=50.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH----HHHHHHHHHHHHHCCC
Q ss_conf 998665223535223446789988882357999999997077518985054453453258----9999999999853358
Q gi|254780676|r 89 FMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA----QHFAEVISAIRESAPS 164 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA----~hfa~~I~~Ir~~~P~ 164 (329)
||+|-.-|--.-.|---...--.--+++-...+.++..+||=.|-||-.|+-+||-.|-- .-+-++|++|... |+
T Consensus 76 ~~Llr~P~~sei~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~~l-kG 154 (353)
T COG3457 76 GHLLRSPCMSEIEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQQL-KG 154 (353)
T ss_pred CEEEECCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CC
T ss_conf 54762652889999987357689725899999999999827521699999835666740244788889999999669-98
Q ss_pred CEEEEE
Q ss_conf 689981
Q gi|254780676|r 165 TTIEVL 170 (329)
Q Consensus 165 ~~IEvL 170 (329)
..+-=|
T Consensus 155 i~~vGl 160 (353)
T COG3457 155 IHLVGL 160 (353)
T ss_pred CEEEEE
T ss_conf 359863
No 404
>KOG2784 consensus
Probab=22.31 E-value=56 Score=14.39 Aligned_cols=180 Identities=16% Similarity=0.217 Sum_probs=84.7
Q ss_pred HHHHHHHHHHCCCEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC---HH
Q ss_conf 999999997077518985054----45345325899999999998533586899815462344689998741070---23
Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVD----RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP---DV 191 (329)
Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~----RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p---dV 191 (329)
+.++.|++.|.- +-+|+--+ +-+|.+.|.+.-+ +-+++..+=-+||...-..+.|.+-. ++. ..
T Consensus 32 ~~~v~al~SL~a-~~~i~~~~~~~~~~~LT~EG~~i~~-------eGS~E~~v~~~i~~~gl~~~el~~k~-~giG~~~A 102 (483)
T KOG2784 32 QQVVGALKSLQA-GGVIEVKDVETKTYELTAEGEEIAR-------EGSHEALVFESIPEEGLAIAELMKKL-VGIGQSKA 102 (483)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEEEEEEEECHHHHHHHH-------CCCCCEEEEECCCCCCCCHHHHHHHH-HCCCHHHH
T ss_conf 899999987760-6805777632478840746799985-------69820252111472313799998663-02114555
Q ss_pred HH------------HCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHH-HHHHHHHHHH
Q ss_conf 32------------0138----30002756389703589999999999708916701404887642068-8999999999
Q gi|254780676|r 192 FN------------HNLE----TVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRN-EILQLMDDLR 254 (329)
Q Consensus 192 ~n------------HNiE----TV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~e-Ei~e~l~DLr 254 (329)
|. -+++ +|++.--.|+-+.....-++-|+.-|-... .+..++.|--|-... ++-..-.||
T Consensus 103 ~~nkWI~~d~~~~~r~v~~itD~v~~~l~~ik~g~~~ake~~dlkKrKLi~~--~~~~~f~v~KGp~Fst~l~k~eTdL- 179 (483)
T KOG2784 103 FKNKWIRVDKSRVVRDVDSITDEVRNQLQQIKRGSADAKEVEDLKKRKLISE--VKIKVFSVTKGPNFSTSLTKLETDL- 179 (483)
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCHHHHHHHHC-
T ss_conf 3056087257632021035538899999998727614778887776544201--2058999713876543377776432-
Q ss_pred HCCCCEEECCHH--------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 669939975022--------------27861007800023846999999999974962434048300103189999
Q gi|254780676|r 255 TADVDFLTMGQY--------------LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDF 316 (329)
Q Consensus 255 ~~gvdilTiGQY--------------L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~ 316 (329)
-.++++-|-| .+|+..|+--- -..=+++++|=.+|||.-..+--+|-||+---++.
T Consensus 180 --T~emi~~gsw~dl~FK~YNF~a~G~~p~~G~lHPL----mKvR~eFRqiF~emGFsEMptn~yVEssFWNFDAL 249 (483)
T KOG2784 180 --TSEMIASGSWKDLKFKPYNFNAEGVPPSSGHLHPL----MKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDAL 249 (483)
T ss_pred --CHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHH
T ss_conf --59886058533156764675467899977765548----88899999999980623066544011024453000
No 405
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=22.26 E-value=25 Score=16.84 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCHHH--------------HHHHHHHHHHCCCCEEECCCCCCCCHHHH
Q ss_conf 610078000238469--------------99999999974962434048300103189
Q gi|254780676|r 270 TRKHHKVESFVTPQD--------------FKSYETIAYSKGFLMVSASPLTRSSYHAG 313 (329)
Q Consensus 270 s~~h~pV~ryv~P~e--------------F~~~~~~a~~~Gf~~V~SgPlVRSSY~A~ 313 (329)
.+.|+-|.=.|.|++ =.+.+++|.+-|..-|+.-||.|+=|+.-
T Consensus 525 NPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~IreiA~e~~vPiven~pLARaLy~~~ 582 (609)
T PRK12772 525 NPTHIAVALKYEKGKDTAPKVVAKGADYVALKIKEIAKENEVPIIENKPLARLIYKKV 582 (609)
T ss_pred CCCHHHEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHC
T ss_conf 7333640434368999999888617859999999999986998761829899999707
No 406
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=22.22 E-value=62 Score=14.06 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf 068899999999966993997502227
Q gi|254780676|r 242 TRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329)
Q Consensus 242 t~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329)
|.|||.+-++.+.++|||-+-+++..-
T Consensus 283 tpe~v~~~l~~~~d~Gvd~i~~~~~~g 309 (324)
T PRK02271 283 TPDDVVEKIEDLLEAGVTQIVAGSPIG 309 (324)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999999999999966998899858999
No 407
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=22.21 E-value=55 Score=14.41 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 3522344678998888235799999999707751898505445345325899999
Q gi|254780676|r 99 ACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAE 153 (329)
Q Consensus 99 ~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~ 153 (329)
.|.|++ .|-|...|-.|-.+. +-..|...|+.--+.+ .-.+|..||.
T Consensus 38 sgdf~q--Rgepai~~k~~r~k~---aL~~g~D~VIelP~~~---s~q~a~~fa~ 84 (358)
T COG1323 38 SGDFTQ--RGEPAIGHKWERKKM---ALEGGADLVIELPLER---SGQGAPYFAT 84 (358)
T ss_pred ECCHHH--CCCCCCCCHHHHHHH---HHHCCCEEEEECCEEE---ECCCCCHHHH
T ss_conf 251330--599740648999888---8744962999765578---6377733468
No 408
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase; InterPro: IPR005956 4-hydroxyphenylpyruvate dioxygenase (1.13.11.27 from EC) oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic . In some bacterial species, this enzyme has been studied as a hemolysin.; GO: 0003868 4-hydroxyphenylpyruvate dioxygenase activity, 0009072 aromatic amino acid family metabolic process.
Probab=22.06 E-value=59 Score=14.25 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHC--CCCEEE-C-CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 068899999999966--993997-5-02227861007800023846999999999974962
Q gi|254780676|r 242 TRNEILQLMDDLRTA--DVDFLT-M-GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329)
Q Consensus 242 t~eEi~e~l~DLr~~--gvdilT-i-GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329)
.-++|+.+.+.||+- ||++|+ | ++|..--..-++= +.-|..+.+++...=+-+.
T Consensus 260 ~t~DI~~tV~~Lr~rClGv~FL~~~P~~YYd~l~~Rv~~---~~~Ed~~~L~~~~IL~D~d 317 (379)
T TIGR01263 260 NTDDIVRTVRALRARCLGVEFLDSTPDTYYDNLEERVGG---LHKEDLDTLRELNILIDGD 317 (379)
T ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCC
T ss_conf 505799999997764144120488971678999875110---2320289998617730136
No 409
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.98 E-value=63 Score=14.03 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=48.7
Q ss_pred EEEEECCCCCCCCCCCCCCCC----------C-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 999866522353522344678----------9-98888235799999999707751898505445345325899999999
Q gi|254780676|r 88 TFMILGAICTRACTFCNVATG----------K-PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVIS 156 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~~G----------~-P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~ 156 (329)
+.-|..|.--+..+.|.|..| . +.-.|.++-.+-+++..+.|-.-+- ||.-||- ..+.=+
T Consensus 39 ~iVIp~N~~~~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~eK~~~A~~~GADtiM-------DLStGGd--l~~iR~ 109 (433)
T PRK13352 39 RIVIPANINHRNLKPVGIGEGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGADTIM-------DLSTGGD--LDEIRR 109 (433)
T ss_pred EEEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEE-------ECCCCCC--HHHHHH
T ss_conf 0892589998988704865686468971116898879889999999999982998578-------6577746--699999
Q ss_pred HHHHHCCC------------------CEEEEECCCCCCCHHHHHHHHHCCCHHHH----HCCCCCCCCCC
Q ss_conf 99853358------------------68998154623446899987410702332----01383000275
Q gi|254780676|r 157 AIRESAPS------------------TTIEVLTPDFLRKPHALEKVVSAKPDVFN----HNLETVASNYL 204 (329)
Q Consensus 157 ~Ir~~~P~------------------~~IEvLiPDf~G~~~al~~v~~A~pdV~n----HNiETV~rLy~ 204 (329)
+|-+.+|- -.++-+++|. -.+.++.-...|.|-+. -|.++++++-.
T Consensus 110 ~il~~s~vpvGTVPiYqa~~~~~~~~~~~~~mt~d~--~f~~ie~qa~~GVDfmTiH~Gi~~~~~~~~~~ 177 (433)
T PRK13352 110 AIIEASPVPVGTVPIYQAAIEAARKYGSIVDMTEDD--LFDVIEKQAKDGVDFMTIHCGVTRETLERLKK 177 (433)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHH--HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
T ss_conf 999649988678019999999988059955599999--99999999971898799620223999999984
No 410
>PRK06298 type III secretion system protein; Validated
Probab=21.84 E-value=32 Score=16.09 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCHHH--------------HHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf 610078000238469--------------999999999749624340483001031899
Q gi|254780676|r 270 TRKHHKVESFVTPQD--------------FKSYETIAYSKGFLMVSASPLTRSSYHAGD 314 (329)
Q Consensus 270 s~~h~pV~ryv~P~e--------------F~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e 314 (329)
.+.|+-|.=+|.|++ =.+.+++|.+-|..-|+.=||.|+=|+..+
T Consensus 263 NPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven~pLARaLy~~~~ 321 (360)
T PRK06298 263 NPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGIPIMRNVPLAHQLLDEGK 321 (360)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCC
T ss_conf 88617888666689999998888548599999999999879988717699999998267
No 411
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=21.81 E-value=63 Score=14.00 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHCCCEE
Q ss_conf 7999999997077518
Q gi|254780676|r 118 PENISWAVRSMKLSHV 133 (329)
Q Consensus 118 P~rvA~av~~l~Lk~v 133 (329)
...+++|+++|||++.
T Consensus 34 ~~ei~~a~~~LGl~~~ 49 (93)
T COG1400 34 LEEIAEALRELGLKPK 49 (93)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 8999999998499746
No 412
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=21.75 E-value=64 Score=14.00 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=12.1
Q ss_pred EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf 76420688999999999669939975022278610
Q gi|254780676|r 238 GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329)
Q Consensus 238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329)
.=|+|...+.+.+. .+.+.|+ |..|+.+
T Consensus 95 DTG~Tl~~vk~~~~-----~~~~Atl--~~K~~s~ 122 (156)
T PRK09177 95 DTGGTARAVREMYP-----KAHFATV--YAKPAGR 122 (156)
T ss_pred CCCHHHHHHHHHCC-----CCEEEEE--EEECCCC
T ss_conf 66378999998678-----8559999--9825677
No 413
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=21.69 E-value=64 Score=13.99 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 86689999999974982365257887876750897269998665--2235352234467899888823579999999970
Q gi|254780676|r 51 SSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGA--ICTRACTFCNVATGKPQPLDPQEPENISWAVRSM 128 (329)
Q Consensus 51 ~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~--~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l 128 (329)
-+-+.++-......+...|.--- =++..|-| .++.. -.|++-+|- .+-+|.. ..|..+|+.+..+
T Consensus 26 ~~y~~~~a~~aE~~Gfd~~l~~~-~~~~~d~~-------~~~aala~~T~~i~~~--~a~~~~~---~~P~~~Ar~~aTl 92 (346)
T TIGR03565 26 HGYLKQIAQAADRLGYTGVLLPT-GRSCEDSW-------VTASALAPVTERLKFL--VAVRPGL---MSPTVAARMAATL 92 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEECC-CCCCCCHH-------HHHHHHHHHHCCCEEE--EEEECCC---CCHHHHHHHHHHH
T ss_conf 89999999999980999899278-99988889-------9999999973803389--9983787---6889999999989
Q ss_pred ------CCCEEEEECCCCCCCCCCH-----------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH----------
Q ss_conf ------7751898505445345325-----------8999999999985335868998154623446899----------
Q gi|254780676|r 129 ------KLSHVVITSVDRDDLDDGG-----------AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHAL---------- 181 (329)
Q Consensus 129 ------~Lk~vViTSV~RDDL~DgG-----------A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al---------- 181 (329)
-+---|+|+-+..+..-.| +.-|.++++.+-...| -||.|+.-.+
T Consensus 93 D~~S~GR~~~nivtg~~~~e~~~~G~~~~hd~Ry~r~~E~~~v~~~lw~~~~--------~~~~G~~~~v~~~~~~~~p~ 164 (346)
T TIGR03565 93 DRLSGGRLLINVVTGGDPVELAGDGLFLDHDERYEATDEFLRVWRRLLAGET--------VDFDGKHIKVENAKLLFPPV 164 (346)
T ss_pred HHHHCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCCEEEECCCCCCCCCC
T ss_conf 9871880799873689999997479998866889999999999999850797--------04558757731887789987
Q ss_pred ----------------HHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEECCCEEEEEEECHH
Q ss_conf ----------------987410702332013830002756389703589999999-999708916701404887642068
Q gi|254780676|r 182 ----------------EKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQ-RVKELDPLIFTKSGIMLGLGETRN 244 (329)
Q Consensus 182 ----------------~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~-~aK~~~~~i~TKSGlMvGLGEt~e 244 (329)
..+...--|++.-.-++ -......++-++ .+.+.|-++..--.+++=.|||++
T Consensus 165 q~~~P~i~~aG~S~~g~~~AAr~aD~~f~~~~~----------~e~~~~~i~~vr~~Aa~~GR~~~~~~~~~vIv~~Tee 234 (346)
T TIGR03565 165 QQPYPPLYFGGSSDAAHELAAEHVDVYLTWGEP----------PAQVAEKIADVRKRAAKRGRTVRFGIRLHVIVRETEE 234 (346)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHCCEEECCCCC----------HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
T ss_conf 799998652898989999999738799737999----------9999999999999999759997266778999657599
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780676|r 245 EILQLMDDLRT 255 (329)
Q Consensus 245 Ei~e~l~DLr~ 255 (329)
|-.+..++|.+
T Consensus 235 EA~~~a~~l~~ 245 (346)
T TIGR03565 235 EAWAAADRLIS 245 (346)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 414
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.50 E-value=64 Score=13.96 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEE---ECCCCCCCHHHHHHHHHC
Q ss_conf 88823579999999970775189850544534532589999999999853358-68998---154623446899987410
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS-TTIEV---LTPDFLRKPHALEKVVSA 187 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~-~~IEv---LiPDf~G~~~al~~v~~A 187 (329)
..|+++-..++++...-|++.+=||--+ | ...++|+++++..|+ +.|-+ | +.+.++..++|
T Consensus 18 ~~~~~~a~~~~~al~~~Gi~~iEVTl~t----p-----~a~~~I~~l~~~~~~~~~iGAGTVl------t~e~~~~ai~a 82 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNS----P-----DPFDSIAALVKALGDDALIGAGTVL------SPEQVDRLADA 82 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC----C-----CHHHHHHHHHHHCCCCEEEEEEECC------CHHHHHHHHHC
T ss_conf 8999999999999998699889991799----7-----6999999999967986599862046------79999999985
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC----
Q ss_conf 7023320138300027563897035899999999997089167014048876420688999999999669939975----
Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---- 263 (329)
Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---- 263 (329)
|.+-+ |-|.- +.++++.+++.+- ..=-|.| |.-|+.+.+ +.|++++-+
T Consensus 83 GA~Fi-------------VSP~~----~~~vi~~a~~~~i--~~iPG~~-----TPsEi~~A~----~~Ga~~vKlFPA~ 134 (206)
T PRK09140 83 GGRLI-------------VTPNI----DPEVIRRAVAYGM--TVMPGVA-----TPTEAFAAL----RAGADALKLFPAS 134 (206)
T ss_pred CCCEE-------------ECCCC----CHHHHHHHHHCCC--CCCCCCC-----CHHHHHHHH----HCCCCEEEECCHH
T ss_conf 99999-------------99999----8999999998299--6527859-----999999999----8598715657511
Q ss_pred --C-HHCC----CCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCEE-ECCCCCCCCHHHHH
Q ss_conf --0-2227----86100780--002384699999999997496243-40483001031899
Q gi|254780676|r 264 --G-QYLQ----PTRKHHKV--ESFVTPQDFKSYETIAYSKGFLMV-SASPLTRSSYHAGD 314 (329)
Q Consensus 264 --G-QYL~----Ps~~h~pV--~ryv~P~eF~~~~~~a~~~Gf~~V-~SgPlVRSSY~A~e 314 (329)
| .|++ |-++++++ .-=|+++...+|=+ -|...| ..|.|++..-.+++
T Consensus 135 ~~Gp~~ikal~~p~P~~~~~~ptGGV~~~N~~~~l~----aGa~avG~Gs~L~~~~~~~~~ 191 (206)
T PRK09140 135 QLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLA----AGAAGFGLGSALYRPGQSAEE 191 (206)
T ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH----CCCCEEEECHHCCCCCCCHHH
T ss_conf 059999999864389999899537988888999998----699199960651599999999
No 415
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=21.49 E-value=64 Score=13.96 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH-HHHHHHCCCC-EEECCHHCCCCCCCCC--CCCCCCHHHHHHHH
Q ss_conf 999999999970891670140488764206889999-9999966993-9975022278610078--00023846999999
Q gi|254780676|r 214 HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL-MDDLRTADVD-FLTMGQYLQPTRKHHK--VESFVTPQDFKSYE 289 (329)
Q Consensus 214 rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~-l~DLr~~gvd-ilTiGQYL~Ps~~h~p--V~ryv~P~eF~~~~ 289 (329)
-+|++|......+. .-..|-|+.|||..+|..+- ..-+.+.++| ++..|..-+.=.+.++ +.-|-..++...+=
T Consensus 344 aai~~l~~~~~~~~--i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~~~~~~f~~~~~l~~~l 421 (451)
T COG0770 344 AALDLLAALPGRKG--IAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALGNKGIYFADKEELITSL 421 (451)
T ss_pred HHHHHHHHCCCCCC--EEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 99999963766885--7994776663854899999999999856950999976206999986577758607779999999
Q ss_pred HHHHHCC
Q ss_conf 9999749
Q gi|254780676|r 290 TIAYSKG 296 (329)
Q Consensus 290 ~~a~~~G 296 (329)
...++.|
T Consensus 422 ~~~l~~g 428 (451)
T COG0770 422 KALLRKG 428 (451)
T ss_pred HHHCCCC
T ss_conf 9856778
No 416
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.46 E-value=64 Score=13.96 Aligned_cols=77 Identities=17% Similarity=0.328 Sum_probs=42.9
Q ss_pred HHHCCCHHHHHCCCCCCCCCCCCC---CCCHH---HHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH-HHHHHHC
Q ss_conf 741070233201383000275638---97035---8999999999970891670140488764206889999-9999966
Q gi|254780676|r 184 VVSAKPDVFNHNLETVASNYLMVR---PGARY---FHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL-MDDLRTA 256 (329)
Q Consensus 184 v~~A~pdV~nHNiETV~rLy~~VR---p~a~Y---~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~-l~DLr~~ 256 (329)
++-+.|+|..--.+-..+-| .++ ..+.| +..-.+++.+++.+|+++ .||||--..|+.-. ..+....
T Consensus 113 llG~~p~v~~~a~~~l~~~y-~l~IvG~~~Gyf~~~e~~~ii~~I~~s~pdil-----~VglG~PkQE~wi~~~~~~l~~ 186 (246)
T PRK03692 113 LVGGKPEVLAQTEAKLRAQW-NVNIVGSQDGYFTPEQRQALFERIHASGAKIV-----TVAMGSPKQEIFMRDCRLVHPD 186 (246)
T ss_pred EECCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE-----EEECCCCHHHHHHHHHHHHCCC
T ss_conf 84288899999999999874-98699846999983777999999985699999-----9956981899999997876898
Q ss_pred CCCEEECCHHC
Q ss_conf 99399750222
Q gi|254780676|r 257 DVDFLTMGQYL 267 (329)
Q Consensus 257 gvdilTiGQYL 267 (329)
+ =++.+|--+
T Consensus 187 ~-v~igVGgsf 196 (246)
T PRK03692 187 A-LYMGVGGTY 196 (246)
T ss_pred C-EEEECCEEE
T ss_conf 7-899705688
No 417
>KOG0002 consensus
Probab=21.39 E-value=35 Score=15.79 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98824500179986689999999974982
Q gi|254780676|r 39 QKPDWIRVRAPVSSGYKETYNILRSRNLT 67 (329)
Q Consensus 39 ~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~ 67 (329)
..|.|+|.+....-.|..-+.--+..+|.
T Consensus 19 ~iP~WiRm~~gn~iryN~kRRHWRrtKL~ 47 (48)
T KOG0002 19 PIPQWIRMRTGNTIRYNAKRRHWRRTKLG 47 (48)
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 86288863048710123777788776307
No 418
>pfam08219 TOM13 Outer membrane protein TOM13. The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins.
Probab=21.36 E-value=12 Score=19.01 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCEEEECCCEEEEEEECHH
Q ss_conf 99999999708916701404887642068
Q gi|254780676|r 216 LRLLQRVKELDPLIFTKSGIMLGLGETRN 244 (329)
Q Consensus 216 L~vL~~aK~~~~~i~TKSGlMvGLGEt~e 244 (329)
..+|+.+. .+.-+.---|+|+|.||--.
T Consensus 31 w~ilr~a~-inl~lpf~ng~mlgfgel~a 58 (78)
T pfam08219 31 WSILRSAS-INLVLPFINGMMLGFGELLA 58 (78)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 99987656-75216755025775889999
No 419
>pfam04108 APG17 Autophagy protein Apg17. Apg17 is required for activating Apg1 protein kinases.
Probab=21.29 E-value=24 Score=16.98 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHCCC--------CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC--CCHHHHH
Q ss_conf 2589999999999853358--------68998154623446899987410702332013830002756389--7035899
Q gi|254780676|r 146 GGAQHFAEVISAIRESAPS--------TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRP--GARYFHS 215 (329)
Q Consensus 146 gGA~hfa~~I~~Ir~~~P~--------~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp--~a~Y~rS 215 (329)
-=+.||-.|+.+++-..++ -.++||.-|= +..+.+-+-+....+.+.+|++.|-.+....++ .+.|...
T Consensus 212 SLt~HfDqC~~av~~~e~~~~~~~e~~Ell~Vl~~Da-~El~dV~~eL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 290 (410)
T pfam04108 212 SLTNHFDQCVTAVKHTEGEPLDDAEYDELLEVLKNDA-AELPDVVKELQTRIDEIENNLKRVKKFLSSHMDKIEELHSAT 290 (410)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888999999998762679998388999999986553-647999999999999999999999999998876899999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999708
Q gi|254780676|r 216 LRLLQRVKELD 226 (329)
Q Consensus 216 L~vL~~aK~~~ 226 (329)
.+++....+.+
T Consensus 291 ~~~~~~l~~~~ 301 (410)
T pfam04108 291 KELLEELEKYK 301 (410)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988
No 420
>smart00642 Aamy Alpha-amylase domain.
Probab=21.22 E-value=65 Score=13.92 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHCCCCEE
Q ss_conf 84699999999997496243
Q gi|254780676|r 281 TPQDFKSYETIAYSKGFLMV 300 (329)
Q Consensus 281 ~P~eF~~~~~~a~~~Gf~~V 300 (329)
+.++|+++-+.+.+.|++.+
T Consensus 68 t~~d~~~lv~~~h~~gi~vi 87 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVI 87 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999998899899
No 421
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase; InterPro: IPR001282 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types . The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells . Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes .; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0006006 glucose metabolic process.
Probab=21.13 E-value=41 Score=15.37 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=30.7
Q ss_pred ECHHHHHHHHHHHHHCCCC----EEECCHHCCCCCCCCCCCCCCCH
Q ss_conf 2068899999999966993----99750222786100780002384
Q gi|254780676|r 241 ETRNEILQLMDDLRTADVD----FLTMGQYLQPTRKHHKVESFVTP 282 (329)
Q Consensus 241 Et~eEi~e~l~DLr~~gvd----ilTiGQYL~Ps~~h~pV~ryv~P 282 (329)
+=.+|.+.+|+-||.++-+ -+-.|||-.-...=-+|.-|..-
T Consensus 265 ~iRdEKVKVL~a~r~~~~~dv~~~~VrGQY~ag~~~G~~v~GY~eE 310 (498)
T TIGR00871 265 SIRDEKVKVLKALRPIDPDDVENNVVRGQYGAGEIGGVSVPGYLEE 310 (498)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCCEECCCCCCC
T ss_conf 7520366688641514832131040200322555588722563377
No 422
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=21.10 E-value=65 Score=13.91 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=21.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC------EEECCCCCCCCHHH
Q ss_conf 07800023846999999999974962------43404830010318
Q gi|254780676|r 273 HHKVESFVTPQDFKSYETIAYSKGFL------MVSASPLTRSSYHA 312 (329)
Q Consensus 273 h~pV~ryv~P~eF~~~~~~a~~~Gf~------~V~SgPlVRSSY~A 312 (329)
..++.-|++|||.+..++-|..-|.+ .|.-|--++|-+-.
T Consensus 10 ~~~ikV~vtpeE~~~I~~~A~~aGLSvS~yLR~~~lgy~i~s~~D~ 55 (114)
T PRK13877 10 GQHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQGYQIKGVIDY 55 (114)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH
T ss_conf 9842344589999999999999599899999997689978861319
No 423
>pfam10007 DUF2250 Uncharacterized protein conserved in archaea (DUF2250). Members of this family of hypothetical archaeal proteins have no known function.
Probab=21.05 E-value=43 Score=15.17 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 8999999999970891670140488764206889999999996699
Q gi|254780676|r 213 FHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329)
Q Consensus 213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329)
..-|.+|++.+.++++-. | .+|.-++=.-+||.+.+++|.+.|-
T Consensus 8 ~~~l~IL~hl~~a~~DYa-k-~ia~~t~ipleev~~~l~~L~~~GL 51 (93)
T pfam10007 8 PLMLTILKHLKKANVDYA-K-SIAKNTKIPLEEVRDLLDKLEEMGL 51 (93)
T ss_pred HHHHHHHHHHHHHCCCHH-H-HHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 888999999998487499-9-9999818989999999999998768
No 424
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.00 E-value=66 Score=13.89 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=103.1
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEE--EECC--CCC--CCCCCCCCC------CCCCCCCCHHHHHHHH
Q ss_conf 999999997498236525788787675089726999--8665--223--535223446------7899888823579999
Q gi|254780676|r 55 KETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFM--ILGA--ICT--RACTFCNVA------TGKPQPLDPQEPENIS 122 (329)
Q Consensus 55 ~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFM--ilG~--~CT--R~C~FC~V~------~G~P~~~D~~EP~rvA 122 (329)
...++++++.+...++++|+=- -..| |..+ =+|. +=. -=..|.+.- ..-|.-+|..+|.-+-
T Consensus 373 kkf~~~l~~~d~~~~l~~A~~Q-----v~~G-A~vLDVNv~~~~~D~~~~m~~~~~~l~~~~~i~~vPl~IDSs~~~viE 446 (1229)
T PRK09490 373 AKFARLIKEEDYDEALDVARQQ-----VENG-AQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIE 446 (1229)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-----HHCC-CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHH
T ss_conf 9999999843989999999999-----9758-978874278765346999999999984366547788468488889999
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HHHCC--CHHH--HHCCC
Q ss_conf 9999707751898505445345325899999999998533586899815462344689998-74107--0233--20138
Q gi|254780676|r 123 WAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEK-VVSAK--PDVF--NHNLE 197 (329)
Q Consensus 123 ~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~-v~~A~--pdV~--nHNiE 197 (329)
.+.+..+=|- +|-||+ |.|| -..|.+.+.-+|+. +..|=+|+=|=.|.....+. +-=|. -+.+ .+.+.
T Consensus 447 aaLk~~~Gk~-iiNSin---lkeG-ee~~~~~~~l~kkY--GAavV~L~~DE~G~a~tae~k~~Ia~R~y~~l~~~~Gi~ 519 (1229)
T PRK09490 447 AGLKCIQGKG-IVNSIS---LKEG-EEKFIHHARLVRRY--GAAVVVMAFDEQGQADTRERKIEICKRAYDILVEEVGFP 519 (1229)
T ss_pred HHHHHCCCCE-EEEECC---CCCC-HHHHHHHHHHHHHH--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998639945-677421---0115-58799987999972--974899840677788789999999999999999974998
Q ss_pred CCCCCCC----CCCCCCH----HH-HHHHHHHHHHHCCCEEEE---CCCEEEEE-EE--CHHHHHHHHHHH-HHCCCCEE
Q ss_conf 3000275----6389703----58-999999999970891670---14048876-42--068899999999-96699399
Q gi|254780676|r 198 TVASNYL----MVRPGAR----YF-HSLRLLQRVKELDPLIFT---KSGIMLGL-GE--TRNEILQLMDDL-RTADVDFL 261 (329)
Q Consensus 198 TV~rLy~----~VRp~a~----Y~-rSL~vL~~aK~~~~~i~T---KSGlMvGL-GE--t~eEi~e~l~DL-r~~gvdil 261 (329)
--.=++- .|-++.. |. ..|+.++.+|+.-|.+.| =|.+=.|| |- -.+=+-.++... ..+|.|.-
T Consensus 520 ~~dIifDpl~ltv~tg~ee~~~~a~etieair~ik~~lp~~~t~lGvSNiSFGlrGn~p~R~~lns~FL~~a~~aGLd~a 599 (1229)
T PRK09490 520 PEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKENLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMG 599 (1229)
T ss_pred HHHEEECCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99968614310002583677758999999999999978996472220320014778862799999999999997187715
Q ss_pred E
Q ss_conf 7
Q gi|254780676|r 262 T 262 (329)
Q Consensus 262 T 262 (329)
-
T Consensus 600 I 600 (1229)
T PRK09490 600 I 600 (1229)
T ss_pred E
T ss_conf 5
No 425
>PRK08462 biotin carboxylase; Validated
Probab=20.98 E-value=66 Score=13.89 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCEEEECCC-----EEEEEEECHHHHHHHHHH-----HHHCCCCEEECCHHCCCCCCCCCCC
Q ss_conf 999999970891670140-----488764206889999999-----9966993997502227861007800
Q gi|254780676|r 217 RLLQRVKELDPLIFTKSG-----IMLGLGETRNEILQLMDD-----LRTADVDFLTMGQYLQPTRKHHKVE 277 (329)
Q Consensus 217 ~vL~~aK~~~~~i~TKSG-----lMvGLGEt~eEi~e~l~D-----Lr~~gvdilTiGQYL~Ps~~h~pV~ 277 (329)
+.++.+++.|.-+..|.. -=..+=++.+|+.+.+.. +..-|-+-+-|-+|+. ..+|+.|+
T Consensus 145 ea~~~a~~iGyPV~lKas~GGGGrGmriv~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~-~~rHIEvQ 214 (446)
T PRK08462 145 EAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQ 214 (446)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC-CCEEEEEE
T ss_conf 99999997299568763278998742895767999999999987788605888669998503-55078999
No 426
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=20.79 E-value=66 Score=13.86 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCC-EEEEECCCCCCC
Q ss_conf 9999999970775-189850544534
Q gi|254780676|r 119 ENISWAVRSMKLS-HVVITSVDRDDL 143 (329)
Q Consensus 119 ~rvA~av~~l~Lk-~vViTSV~RDDL 143 (329)
..+|+++++||-+ |.|.|-+|+|=.
T Consensus 97 ~~la~~i~~~gK~fyfVRsK~D~dl~ 122 (197)
T cd04104 97 VKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999999809928999861214000
No 427
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.76 E-value=66 Score=13.86 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 79986689999999974982365257887876750897269998665223535223446789988882357999999997
Q gi|254780676|r 48 APVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRS 127 (329)
Q Consensus 48 ~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~ 127 (329)
+|+-+.+.++-..+..+++|++==+- +-||=+-|.-. +. ..+.+.-.+|-+.+-+-.+.
T Consensus 13 ~p~~~~lk~~id~la~~k~N~l~l~~------------eD~f~~~~~~~--------~~-~~~~~YT~~ei~ei~~yA~~ 71 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYY------------EDTFPYEGEPE--------VG-RMRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEE------------EECCCCCCCCC--------CC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 88999999999999984995899999------------85444389863--------45-58999799999999999998
Q ss_pred HCCC
Q ss_conf 0775
Q gi|254780676|r 128 MKLS 131 (329)
Q Consensus 128 l~Lk 131 (329)
.++.
T Consensus 72 r~I~ 75 (301)
T cd06565 72 LGIE 75 (301)
T ss_pred CCCE
T ss_conf 6988
No 428
>KOG3123 consensus
Probab=20.72 E-value=52 Score=14.63 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999985335868998154623446899987410702332013830002756389703589999999999708916
Q gi|254780676|r 150 HFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329)
Q Consensus 150 hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329)
-|..-|.+=|+..-.|.. | -|.+-+++.++.+... +..|..-|-.+--+--=++|.-....+..+
T Consensus 145 SfydkI~~Nr~~glHTLc--L-LDIkvkEqs~enl~rg------------rkiyeppRymsvn~a~~QlLei~e~~~~~~ 209 (272)
T KOG3123 145 SFYDKIKENRQLGLHTLC--L-LDIKVKEQSVENLARG------------RKIYEPPRYMSVNEAAEQLLEIEEKRGEPA 209 (272)
T ss_pred HHHHHHHHHHHCCCEEEE--E-EEEEECCHHHHHHHCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 389999974515843689--9-8876342778887514------------534588014109999999999998608977
Q ss_pred EECCCEEEEEE---ECHHHH-HHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 70140488764---206889-9999999966993997502227861007800023846999999999974
Q gi|254780676|r 230 FTKSGIMLGLG---ETRNEI-LQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSK 295 (329)
Q Consensus 230 ~TKSGlMvGLG---Et~eEi-~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329)
+|--.+.+|++ -.++.| ..+|.||.+.+- |.=|. -+-+.--.+|-|-+.+..++...
T Consensus 210 ~~edT~~v~~~R~Gs~~q~i~~gt~~~l~~~d~-----G~PLH----slii~ge~h~lE~e~l~~~~~~~ 270 (272)
T KOG3123 210 YTEDTLCVAVARVGSDDQKIVAGTIKDLAEVDF-----GEPLH----SLIIPGETHPLELEMLESFAKNL 270 (272)
T ss_pred CCCCCEEEEEEECCCCCCEEEHEEHHHHHHCCC-----CCCCE----EEEEECCCCHHHHHHHHHHCCCC
T ss_conf 488850899996079850342201876763524-----78842----68865576768999999841234
No 429
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=58 Score=14.26 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCC-HHHHHCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 689998741070-233201383000275638-----97035899999999997089167
Q gi|254780676|r 178 PHALEKVVSAKP-DVFNHNLETVASNYLMVR-----PGARYFHSLRLLQRVKELDPLIF 230 (329)
Q Consensus 178 ~~al~~v~~A~p-dV~nHNiETV~rLy~~VR-----p~a~Y~rSL~vL~~aK~~~~~i~ 230 (329)
..++.-+.-+|. +|+-||+.-.+.|.+.-. ..-+-.-.+++++.|++.|-.+.
T Consensus 68 Pk~vRglhPSG~~~VlV~Nv~dLe~ldp~~~aarIAs~VG~rKR~eI~~rA~elGikVl 126 (133)
T COG1717 68 PKAVRGLHPSGYEEVLVHNVKDLEKLDPETQAARIASTVGARKRIEILERARELGIKVL 126 (133)
T ss_pred CHHHCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 27652568776602355168887423804679999976417789999999998291774
No 430
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=20.62 E-value=54 Score=14.49 Aligned_cols=150 Identities=11% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--------CHHHHHHH---HHHHHHHHCCCCEEEEECCCCCCC-HH
Q ss_conf 8882357999999997077518985054453453--------25899999---999998533586899815462344-68
Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDD--------GGAQHFAE---VISAIRESAPSTTIEVLTPDFLRK-PH 179 (329)
Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~D--------gGA~hfa~---~I~~Ir~~~P~~~IEvLiPDf~G~-~~ 179 (329)
.++|++..++|.-+++. |+--.++.|++|+|.+ .+..++|+ --+.||+. .--|=+||-.--|- +.
T Consensus 200 G~~P~~Ay~iA~eie~~-L~~~~~~~i~~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~--~~PiiILIGGaSGvGKS 276 (492)
T PRK12337 200 GVAPDVARKVARVTQRD-LRGSGDRVVRRDEIREKVEALLRDEVGPDVSARYRLLRVLRKP--PRPLHVLLGGVSGTGKS 276 (492)
T ss_pred CCCHHHHHHHHHHHHHH-HHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHH
T ss_conf 58888999999999999-9865887970999999999999873038899999999997356--88769996078886688
Q ss_pred HHHHHHHCCCHHHHHCC--CCCCCCCCCCC-----C---CCHHHHHHHHHHHHHHC---CCEEEECCCEEEEEEECHHHH
Q ss_conf 99987410702332013--83000275638-----9---70358999999999970---891670140488764206889
Q gi|254780676|r 180 ALEKVVSAKPDVFNHNL--ETVASNYLMVR-----P---GARYFHSLRLLQRVKEL---DPLIFTKSGIMLGLGETRNEI 246 (329)
Q Consensus 180 al~~v~~A~pdV~nHNi--ETV~rLy~~VR-----p---~a~Y~rSL~vL~~aK~~---~~~i~TKSGlMvGLGEt~eEi 246 (329)
.+...+..+.-+-+ =| .+++...+.+- | .++|. --+....- .+.-.+++-+|-|.-..-+.|
T Consensus 277 TlAseLA~RLGI~~-VIsTDsIREVMR~~is~el~P~Lh~SSy~----Awk~L~~~~~~~~~~~~~~~vi~GF~~Qv~~V 351 (492)
T PRK12337 277 VLAAELAYRLGITR-VVPTDAIREVMRAMVSKDLLPTLHASTFN----AWEALVPPGLGLPGEPTRVELLAGFRDQVQQV 351 (492)
T ss_pred HHHHHHHHHHCCCC-CCCCHHHHHHHHHHCCHHHCCHHHHHHHH----HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999609881-02544799999984597648457775568----88860873457777860768998999999999
Q ss_pred HHHHHHH----HHCCCCEEECCHHCCC
Q ss_conf 9999999----9669939975022278
Q gi|254780676|r 247 LQLMDDL----RTADVDFLTMGQYLQP 269 (329)
Q Consensus 247 ~e~l~DL----r~~gvdilTiGQYL~P 269 (329)
...++-+ ..-|.+++-=|--|-|
T Consensus 352 ~vGl~aVieRa~~EG~SvVIEGVHLvP 378 (492)
T PRK12337 352 SVGLKAVVRRSILEGTSLVLEGVHLVP 378 (492)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECH
T ss_conf 999999999999728867998333070
No 431
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=20.53 E-value=67 Score=13.83 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCC-----------------------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 882357999999997077518985054-----------------------453453258999999999985335868998
Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVD-----------------------RDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329)
Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~-----------------------RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329)
.|.+ ..+..+...||.-+|++-+|+ |--++.-|+.++.+-++..+... .-|=|
T Consensus 58 fDKn--~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~--~~lgv 133 (327)
T cd04738 58 FDKN--AEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRG--GPLGV 133 (327)
T ss_pred CCCC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCC--CCEEE
T ss_conf 8988--5899999966986799714368888899998579746754011004587176999999998404568--71799
Q ss_pred ECCCCC------CC---HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 154623------44---689998741070233201383000275638970358999999999970891670140488764
Q gi|254780676|r 170 LTPDFL------RK---PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240 (329)
Q Consensus 170 LiPDf~------G~---~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG 240 (329)
=|--.+ .- .+.++++. .-.|.|-=||-.. -++..|.-.+-+.--++|+.+++....+..+.=+++-|.
T Consensus 134 nIg~nk~t~~e~~~~Dy~~~~~~l~-~~aDy~~iNiSsP--Nt~glr~lq~~~~l~~ll~~v~~~~~~~~~~~Pi~vKls 210 (327)
T cd04738 134 NIGKNKDTPLEDAVEDYVIGVRKLG-PYADYLVVNVSSP--NTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA 210 (327)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHC-CCCCEEEEECCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9850478826768999999999853-5577899954688--984510026889999999999999985377886699817
Q ss_pred --ECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf --206889999999996699399750
Q gi|254780676|r 241 --ETRNEILQLMDDLRTADVDFLTMG 264 (329)
Q Consensus 241 --Et~eEi~e~l~DLr~~gvdilTiG 264 (329)
.+++++.+.++-+.+.|+|=+++.
T Consensus 211 PD~~~~~i~~i~~~~~~~g~dGvi~t 236 (327)
T cd04738 211 PDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99766789999999997399789995
No 432
>smart00528 HNS Domain in histone-like proteins of HNS family.
Probab=20.53 E-value=60 Score=14.19 Aligned_cols=39 Identities=10% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 777755682421488888889882450017998668999
Q gi|254780676|r 19 PNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKET 57 (329)
Q Consensus 19 ~~~~~~r~p~k~~~p~~~~~~kP~Wlk~~~p~~~~~~~~ 57 (329)
+...+-|+|.--.+.=+-+-|+|.||+--+..|....+.
T Consensus 6 ~~~~KYr~p~~~~~TWtGrGR~P~w~~~~l~~G~~ledf 44 (46)
T smart00528 6 ARPAKYRYPDNNGETWSGRGRTPRWLAAALDSGKSLEDF 44 (46)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 789873688899983407898878999999949988997
No 433
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.51 E-value=67 Score=13.82 Aligned_cols=183 Identities=13% Similarity=0.190 Sum_probs=105.4
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 69998665223535223446789988882357999999997077518985054453453258999999999985335868
Q gi|254780676|r 87 ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTT 166 (329)
Q Consensus 87 ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 166 (329)
..+-|.+..|.|.-.|=. ... ...|..+|+.-...|.+...|.-.++ .-.|-....+.|++|.+.+ .+.
T Consensus 8 Paidi~~g~~Vk~~~~~~-----~~~--~gdP~~~ak~~~~~g~d~lhivDld~---a~~~~~~n~~~I~~i~~~~-~ip 76 (232)
T TIGR03572 8 PCLLLKDGRLVKTVQFKD-----PRY--IGDPVNAARIYNAKGADELIVLDIDA---SKRGREPLFELISNLAEEC-FMP 76 (232)
T ss_pred EEEEEECCEEEECCCCCC-----CEE--CCCHHHHHHHHHHCCCCEEEEEECCC---CCCCCCCHHHHHHHHHHHC-CCC
T ss_conf 999999999997847877-----657--88999999999986999999996876---4348821799999999972-985
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHCCCE-E----EECCC------
Q ss_conf 99815462344689998741070233201383000275638970358999999-999970891-6----70140------
Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLL-QRVKELDPL-I----FTKSG------ 234 (329)
Q Consensus 167 IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL-~~aK~~~~~-i----~TKSG------ 234 (329)
|++ -.=--+.+.++.++++|.|.+.=|-..++ . .+++ +-++.+|.. + -.|.+
T Consensus 77 i~v--GGGIrs~e~~~~ll~~GadkViigs~a~~-------------~-p~~~~~~~~~~G~q~ivvsiD~k~~~~~~~~ 140 (232)
T TIGR03572 77 LTV--GGGIRSLEDAKKLLSLGADKVSINTAALE-------------N-PDLIEEAARRFGSQCVVVSIDVKKELDGSDY 140 (232)
T ss_pred EEE--EECEEEHHHHHHHHHCCCCEEEECHHHHH-------------C-CHHHHHHHHHCCCCCEEEEEEEECCCCCCCE
T ss_conf 899--71330389999999769968993454521-------------9-3577899998699458999998416778727
Q ss_pred -EEE--EEEECHHHHHHHHHHHHHCCCCEEECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf -488--76420688999999999669939975022278-610078000238469999999999749624340483
Q gi|254780676|r 235 -IML--GLGETRNEILQLMDDLRTADVDFLTMGQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPL 305 (329)
Q Consensus 235 -lMv--GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl 305 (329)
++. |--.|.-++.+.+..+.+.|+.-+-+..--+- +..- | .|+-+++++......-++||=.
T Consensus 141 ~v~~~g~~~~~~~~~~~~i~~~~~~g~geii~tdI~~DG~~~G--------~-d~~l~~~i~~~~~~piiasGGi 206 (232)
T TIGR03572 141 KVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG--------Y-DLELIKTVSDAVSIPVIALGGA 206 (232)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC--------C-CHHHHHHHHHHCCCCEEEECCC
T ss_conf 9996677635798799999998735998999988857685676--------8-9999999998689999998898
No 434
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=20.48 E-value=67 Score=13.82 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=88.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99866522353522344678998888235799999999707751898505445345325899999999998533586899
Q gi|254780676|r 89 FMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE 168 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE 168 (329)
+-|++..|-|..+-- ...+. .-...|..+|+.-...|.+...+--.| - .-.|...-.+.|++|.+.. .+.|+
T Consensus 6 IDl~~Gk~Vrl~~G~---~~~~~-~y~~dP~~~A~~~~~~Ga~~lhvvDLd--~-A~~g~~~n~~~I~~i~~~~-~~pi~ 77 (241)
T PRK00748 6 IDLKDGQCVRLYQGD---YGQET-VYGDDPLAQAQAWQDQGAEWLHLVDLD--G-AFAGRPVNLELIEAIVAAV-DIPVQ 77 (241)
T ss_pred EEEECCCEEECCCCC---CCCCE-EECCCHHHHHHHHHHCCCCEEEEEECC--C-CCCCCCCHHHHHHHHHHHC-CCCEE
T ss_conf 990689188641533---78770-607899999999998799989999785--4-2028820799999999867-99999
Q ss_pred EECCCCCC---CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCEEE----ECCCEEEEEE
Q ss_conf 81546234---468999874107023320138300027563897035899999999-997089167----0140488764
Q gi|254780676|r 169 VLTPDFLR---KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQR-VKELDPLIF----TKSGIMLGLG 240 (329)
Q Consensus 169 vLiPDf~G---~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~~~i~----TKSGlMvGLG 240 (329)
+ -| +.+.++.++++|.|.+.=|-+.++.. ++++. ++.++..+. .|-|...--|
T Consensus 78 v-----GGGIrs~e~~~~~l~~GadkVvigS~a~~n~--------------~~i~~~~~~~g~~ivvsiD~k~~~v~~~g 138 (241)
T PRK00748 78 L-----GGGIRDLETVEAYLDAGVARVIIGTAAVKNP--------------ELVKEACKKFPGRIVVGLDARDGKVATRG 138 (241)
T ss_pred E-----ECCCCCHHHHHHHHHCCCCEEEECCHHHHCH--------------HHHHHHHHHCCCCEEEEEEECCCEEECCC
T ss_conf 8-----2770749999999976977588647103396--------------89999986235557999982166540157
Q ss_pred ---ECHHHHHHHHHHHHHCCCCEEECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf ---20688999999999669939975022278-61007800023846999999999974962434048
Q gi|254780676|r 241 ---ETRNEILQLMDDLRTADVDFLTMGQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329)
Q Consensus 241 ---Et~eEi~e~l~DLr~~gvdilTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329)
.|.-++.+.++.+.+.|+.-+-+.---+- +..- -.|+.++++........++||=
T Consensus 139 w~~~t~~~~~~~i~~~~~~G~~eii~tdI~~DGt~~G---------~d~~l~~~i~~~~~ipviasGG 197 (241)
T PRK00748 139 WQEVSGVDLEDLAKRFEDAGVAAIIYTDISRDGTLSG---------PNVELTRELAAATPIPVIASGG 197 (241)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCC---------CCHHHHHHHHHHCCCCEEEECC
T ss_conf 5546797489999999855875699988705685476---------8999999999868998999889
No 435
>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases. Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.
Probab=20.38 E-value=43 Score=15.22 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=18.1
Q ss_pred CCEEECCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 823652578878767508972699986652
Q gi|254780676|r 66 LTTVCEEAGCPNIGECWNKNHATFMILGAI 95 (329)
Q Consensus 66 L~TVCeeA~CPNi~ECw~~gtATFMilG~~ 95 (329)
|-++=.+--|||+. .+.--..|||++
T Consensus 54 L~~mdwsCPCPNit----~~~~~liiMG~V 79 (109)
T cd03575 54 LLNMDWSCPCPNIT----AGEGPLIIMGDV 79 (109)
T ss_pred EECCCCCCCCCCCC----CCCCCEEEEEEC
T ss_conf 51566789999737----267867999962
No 436
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.35 E-value=68 Score=13.80 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HCCCHHHH
Q ss_conf 23579999999970775189850544534532589999999999853358689981546234468999874-10702332
Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV-SAKPDVFN 193 (329)
Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~-~A~pdV~n 193 (329)
+++.+.+++.+.+..=++||=-..+-|. .++....|+...+..|+.. ..+.+=..-+.| .+.+...+ ..+++.++
T Consensus 140 ~e~a~~~~~~a~~~~~~~vvGidl~G~E-~~~~~~~f~~~f~~a~~~g--l~~t~HaGE~~~-~~~v~~ai~~l~~~RIG 215 (325)
T cd01320 140 PESAQETLELALKYRDKGVVGFDLAGDE-VGFPPEKFVRAFQRAREAG--LRLTAHAGEAGG-PESVRDALDLLGAERIG 215 (325)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHHHHCC--CEEEEECCCCCC-HHHHHHHHHCCCCCEEC
T ss_conf 9999999999997167877884257866-7898689999999999859--845664588898-28899998604986432
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 013830002756389703589999999999708--9167014048876420688999999999669939
Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELD--PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF 260 (329)
Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~--~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi 260 (329)
|-+-.++ .-++++++++.+ ..+|--|.+++|.=.+.++ --+..+.+.||.+
T Consensus 216 HG~~~~~--------------d~~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~--HPi~~~~~~gv~v 268 (325)
T cd01320 216 HGIRAIE--------------DPELVKRLAERNIPLEVCPTSNVQTGAVKSLAE--HPLRELLDAGVKV 268 (325)
T ss_pred CCCCCCC--------------CHHHHHHHHHCCCEEEECCCCCHHCCCCCCCCC--CHHHHHHHCCCEE
T ss_conf 6411346--------------999999998609727876653211057888778--7299999879929
No 437
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=20.27 E-value=68 Score=13.79 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHCCCCE
Q ss_conf 8469999999999749624
Q gi|254780676|r 281 TPQDFKSYETIAYSKGFLM 299 (329)
Q Consensus 281 ~P~eF~~~~~~a~~~Gf~~ 299 (329)
.++--+.+++.|.++|+.+
T Consensus 326 d~~l~~~i~~~a~~~g~~~ 344 (406)
T TIGR03176 326 NKEIVAIIEQLAKAEKLNY 344 (406)
T ss_pred CHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999669997
No 438
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=20.24 E-value=68 Score=13.78 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCCCH
Q ss_conf 53522344678998888235799999999707751898--505445345325
Q gi|254780676|r 98 RACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVI--TSVDRDDLDDGG 147 (329)
Q Consensus 98 R~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vVi--TSV~RDDL~DgG 147 (329)
-+|+||. +|-.+...++|.|.++ .-+.|-+++++|
T Consensus 8 ~~CPFC~---------------KVR~~L~~~~ipy~~veV~p~~k~ei~~s~ 44 (77)
T cd03040 8 KTCPFCC---------------KVRAFLDYHGIPYEVVEVNPVSRKEIKWSS 44 (77)
T ss_pred CCCCCHH---------------HHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 7896189---------------999999875997279981730114134689
No 439
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=20.17 E-value=68 Score=13.77 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCHHH-HHHHHHHHHHHCCCEEEE
Q ss_conf 6750897269998665223535223446789--98888235-799999999707751898
Q gi|254780676|r 79 GECWNKNHATFMILGAICTRACTFCNVATGK--PQPLDPQE-PENISWAVRSMKLSHVVI 135 (329)
Q Consensus 79 ~ECw~~gtATFMilG~~CTR~C~FC~V~~G~--P~~~D~~E-P~rvA~av~~l~Lk~vVi 135 (329)
.|+-..||-|| |-|+.+.+.. ....|+.| ...+++|++..|++.++.
T Consensus 107 ~EmL~sG~TTv----------~d~~~~h~~~~~~~~~~~~~~~~av~~A~~~~GiR~~l~ 156 (457)
T PRK09229 107 VEMLEAGYTRV----------GEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLL 156 (457)
T ss_pred HHHHHCCCCEE----------EEECEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 99997596179----------750100357787644688899999999999829856741
Done!