HHsearch alignment of GI: 254780676 and MMDB domain: 1ydn_A_
>1ydn_A (A:) Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M}
Probab=94.67 E-value=0.4 Score=29.11 Aligned_cols=147 Identities=7% Similarity=-0.029 Sum_probs=103.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 98888235799999999707751898505445345325899999999998533586899815462344689998741070
Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329)
Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329)
......++-.++++...++|..++=+.+...-+..-. +.+.+.......+...+..+.. .-+...++.+.+++.
T Consensus 20 ~~~~~~~~k~~i~~~L~~~Gv~~iE~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (295)
T 1ydn_A 20 KRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ----LADSREVXAGIRRADGVRYSVL--VPNXKGYEAAAAAHA 93 (295)
T ss_dssp SSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG----GTTHHHHHHHSCCCSSSEEEEE--CSSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH----HHHHHHHHHHCCCCCCCHHHHH--HHCCCCHHHHCCCCC
T ss_conf 9998999999999999982989899807757754688----8878887742156675228876--531320111013564
Q ss_pred HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEE------EECHHHHHHHHHHHHHCCCCE
Q ss_conf 2332013830002756389---7035899999999997089167014048876------420688999999999669939
Q gi|254780676|r 190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGL------GETRNEILQLMDDLRTADVDF 260 (329)
Q Consensus 190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL------GEt~eEi~e~l~DLr~~gvdi 260 (329)
+.+.--+-+.+..-..+|. ...-++-++.++++|+.|..+. -.++-.- +-+.+.+.+..+.+.+.|+|+
T Consensus 94 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 171 (295)
T 1ydn_A 94 DEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR--GYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHE 171 (295)
T ss_dssp SEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECSSEETTTEECCHHHHHHHHHHHHHHTCSE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 08875201468999888510576656665477888764023443--1133102564200133446799988777448538
Q ss_pred EECC
Q ss_conf 9750
Q gi|254780676|r 261 LTMG 264 (329)
Q Consensus 261 lTiG 264 (329)
+.|-
T Consensus 172 i~l~ 175 (295)
T 1ydn_A 172 VSLG 175 (295)
T ss_dssp EEEE
T ss_pred EECC
T ss_conf 9616