Query gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 329 No_of_seqs 137 out of 1373 Neff 3.9 Searched_HMMs 33803 Date Wed Jun 1 14:46:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780676.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1r30_A Biotin synthase; SAM r 99.7 3.5E-17 1E-21 142.5 8.7 270 33-309 9-288 (369) 2 >3iix_A Biotin synthetase, put 99.7 1.5E-16 4.4E-21 138.1 8.8 265 40-313 6-277 (348) 3 >2a5h_A L-lysine 2,3-aminomuta 99.5 1.7E-13 5E-18 116.4 12.1 212 68-286 3-218 (248) 4 >1olt_A Oxygen-independent cop 99.5 4E-14 1.2E-18 120.9 7.6 274 37-314 6-299 (364) 5 >3c8f_A Pyruvate formate-lyase 99.1 9.5E-10 2.8E-14 90.0 9.7 209 89-300 22-244 (245) 6 >2yx0_A Radical SAM enzyme; pr 98.9 1.7E-08 5.1E-13 81.1 11.0 212 85-300 70-310 (342) 7 >1tv8_A MOAA, molybdenum cofac 98.8 4.3E-07 1.3E-11 71.2 14.0 197 90-294 18-225 (313) 8 >2qgq_A Protein TM_1862; alpha 97.8 4.6E-05 1.4E-09 56.9 6.1 104 194-297 7-117 (122) 9 >2z2u_A UPF0026 protein MJ0257 97.3 0.00099 2.9E-08 47.5 7.3 187 114-312 112-307 (311) 10 >3ivs_A Homocitrate synthase, 96.4 0.057 1.7E-06 35.0 10.1 143 110-264 55-200 (311) 11 >3can_A Pyruvate-formate lyase 95.7 0.11 3.4E-06 32.9 8.9 148 152-303 22-182 (182) 12 >2qgq_A Protein TM_1862; alpha 95.4 0.28 8.2E-06 30.2 11.5 99 85-186 3-109 (112) 13 >3ewb_X 2-isopropylmalate synt 95.3 0.3 8.9E-06 30.0 10.6 149 107-264 18-170 (293) 14 >3chv_A Prokaryotic domain of 95.2 0.32 9.5E-06 29.7 12.6 151 109-269 26-184 (284) 15 >1nvm_A HOA, 4-hydroxy-2-oxova 95.1 0.13 3.8E-06 32.6 7.6 157 110-292 24-187 (273) 16 >1ydn_A Hydroxymethylglutaryl- 94.7 0.4 1.2E-05 29.1 9.1 147 110-264 20-175 (295) 17 >2ftp_A Hydroxymethylglutaryl- 94.2 0.36 1.1E-05 29.4 8.1 147 110-264 24-179 (302) 18 >1ydo_A HMG-COA lyase; TIM-bar 93.5 0.24 7E-06 30.7 6.1 154 102-264 14-177 (307) 19 >3eeg_A 2-isopropylmalate synt 93.0 0.89 2.6E-05 26.6 11.3 159 111-288 23-185 (325) 20 >3ble_A Citramalate synthase f 92.5 1 3E-05 26.2 8.5 150 110-264 35-189 (337) 21 >2ztj_A Homocitrate synthase; 92.4 1.1 3.1E-05 26.1 9.2 154 99-264 8-164 (277) 22 >1rqb_A Transcarboxylase 5S su 91.5 0.45 1.3E-05 28.7 5.4 143 116-264 47-195 (359) 23 >3dxi_A Putative aldolase; TIM 88.6 0.64 1.9E-05 27.7 4.2 141 110-264 18-163 (267) 24 >1sr9_A 2-isopropylmalate synt 87.4 1.4 4E-05 25.3 5.2 162 99-264 76-252 (370) 25 >2nx9_A Oxaloacetate decarboxy 84.3 3.6 0.00011 22.3 8.8 162 113-299 124-318 (353) 26 >3bg3_A Pyruvate carboxylase, 81.9 4.1 0.00012 22.0 5.6 22 242-263 194-215 (398) 27 >3dmy_A Protein FDRA; predicte 81.2 1.5 4.3E-05 25.1 3.2 123 74-207 32-166 (174) 28 >3fdg_A Dipeptidase AC. metall 80.9 4.8 0.00014 21.5 7.9 156 120-298 147-333 (355) 29 >2qs8_A XAA-Pro dipeptidase; a 79.9 5.2 0.00015 21.2 7.2 66 240-307 14-82 (119) 30 >1yht_A DSPB; beta barrel, hyd 78.0 5.9 0.00017 20.8 7.4 147 113-268 30-221 (367) 31 >3c6c_A 3-keto-5-aminohexanoat 78.0 5.9 0.00017 20.8 12.1 141 110-258 41-204 (316) 32 >2hsa_B 12-oxophytodienoate re 77.5 2.8 8.4E-05 23.1 3.7 34 240-273 262-297 (402) 33 >1thf_D HISF protein; thermoph 76.6 0.56 1.6E-05 28.1 -0.1 186 112-314 26-212 (253) 34 >2p9b_A Possible prolidase; pr 75.9 6.6 0.0002 20.5 6.3 81 115-201 20-109 (175) 35 >3cpr_A Dihydrodipicolinate sy 74.5 7.2 0.00021 20.2 9.3 102 176-297 38-143 (221) 36 >2cw6_A Hydroxymethylglutaryl- 73.6 7.6 0.00022 20.1 7.1 35 54-104 29-63 (298) 37 >1to3_A Putative aldolase YIHT 72.4 8 0.00024 19.9 10.8 195 52-267 45-257 (304) 38 >2epl_X N-acetyl-beta-D-glucos 71.5 8.4 0.00025 19.7 7.3 139 114-267 17-188 (318) 39 >1zlp_A PSR132, petal death pr 69.1 9.4 0.00028 19.4 11.6 188 120-317 50-272 (318) 40 >2f6u_A GGGPS, (S)-3-O-geranyl 68.2 4.8 0.00014 21.5 3.0 141 113-267 17-221 (234) 41 >2hk0_A D-psicose 3-epimerase; 67.6 5.9 0.00017 20.9 3.4 170 117-293 108-300 (309) 42 >3be7_A Zn-dependent arginine 66.9 10 0.00031 19.1 7.1 62 241-302 27-89 (132) 43 >1o5k_A DHDPS, dihydrodipicoli 66.8 10 0.00031 19.1 5.4 80 112-194 90-172 (306) 44 >1gte_A Dihydropyrimidine dehy 65.8 11 0.00032 18.9 9.9 168 140-315 88-264 (280) 45 >2uvj_A TOGB, ABC type peripla 65.0 9 0.00027 19.5 3.9 58 147-204 18-77 (173) 46 >1req_B Methylmalonyl-COA muta 63.7 12 0.00035 18.7 6.5 72 116-195 73-144 (163) 47 >3dhu_A Alpha-amylase; structu 62.8 12 0.00037 18.6 5.6 20 250-269 297-316 (351) 48 >3gnh_A L-lysine, L-arginine c 62.7 12 0.00037 18.6 6.8 60 240-302 12-75 (118) 49 >1vkf_A Glycerol uptake operon 62.2 8.3 0.00025 19.8 3.3 107 143-251 37-169 (188) 50 >1ps9_A 2,4-dienoyl-COA reduct 61.6 13 0.00038 18.4 7.4 113 148-267 191-313 (333) 51 >3eb2_A Putative dihydrodipico 60.3 14 0.0004 18.3 8.8 92 172-272 22-116 (245) 52 >2qiw_A PEP phosphonomutase; N 59.6 14 0.00041 18.2 7.4 85 178-263 96-187 (255) 53 >1eix_A Orotidine 5'-monophosp 59.2 11 0.00033 18.8 3.6 54 215-268 172-225 (245) 54 >3hbl_A Pyruvate carboxylase; 59.0 14 0.00042 18.1 8.2 72 222-295 262-351 (389) 55 >1f76_A Dihydroorotate dehydro 57.6 15 0.00045 18.0 8.3 125 183-313 160-305 (336) 56 >2iw0_A Chitin deacetylase; hy 56.7 16 0.00046 17.9 8.0 190 41-269 41-240 (254) 57 >2bhu_A Maltooligosyltrehalose 55.9 16 0.00047 17.8 5.6 16 151-166 173-188 (355) 58 >3l12_A Putative glycerophosph 55.8 16 0.00047 17.8 6.0 127 116-264 108-239 (256) 59 >1z41_A YQJM, probable NADH-de 55.3 16 0.00048 17.7 6.4 35 238-272 223-257 (338) 60 >3feq_A Putative amidohydrolas 54.9 17 0.00049 17.7 6.4 69 234-302 29-98 (140) 61 >1zy9_A Alpha-galactosidase; T 54.3 17 0.0005 17.6 4.4 57 112-168 16-77 (196) 62 >2gt1_A Lipopolysaccharide hep 54.0 17 0.00051 17.6 4.7 79 146-230 12-90 (165) 63 >2qf7_A Pyruvate carboxylase p 53.8 17 0.00051 17.5 8.0 169 114-295 158-350 (388) 64 >1yx1_A Hypothetical protein P 52.9 15 0.00044 18.0 3.3 136 116-260 84-225 (264) 65 >2ojp_A DHDPS, dihydrodipicoli 52.8 18 0.00053 17.4 7.2 26 114-139 81-106 (292) 66 >3flk_A Tartrate dehydrogenase 52.2 18 0.00054 17.4 4.8 61 113-173 163-225 (364) 67 >1x0l_A Homoisocitrate dehydro 51.8 18 0.00055 17.3 4.5 62 112-173 140-203 (333) 68 >1w5q_A Delta-aminolevulinic a 51.5 19 0.00055 17.3 4.8 204 115-322 32-303 (304) 69 >2aaa_A Alpha-amylase; glycosi 51.2 19 0.00056 17.3 4.7 55 114-168 41-117 (290) 70 >3fa4_A 2,3-dimethylmalate lya 51.2 19 0.00056 17.3 10.4 139 120-263 29-189 (241) 71 >2ehh_A DHDPS, dihydrodipicoli 49.6 20 0.00059 17.1 8.4 26 114-139 80-105 (294) 72 >2qul_A D-tagatose 3-epimerase 48.9 7.2 0.00021 20.2 1.2 206 50-292 45-281 (290) 73 >1pv8_A Delta-aminolevulinic a 48.3 21 0.00061 17.0 6.0 202 114-319 32-302 (305) 74 >2z61_A Probable aspartate ami 48.1 9.3 0.00028 19.4 1.7 104 182-287 22-133 (144) 75 >3gka_A N-ethylmaleimide reduc 48.1 11 0.00032 18.9 2.0 138 109-267 147-319 (361) 76 >1vli_A Spore coat polysacchar 47.6 21 0.00063 16.9 6.5 130 114-268 42-195 (300) 77 >2h8z_A Xenobiotic reductase A 47.2 22 0.00064 16.8 13.4 163 145-312 75-265 (315) 78 >2yyu_A Orotidine 5'-phosphate 46.9 13 0.00039 18.4 2.3 57 142-198 31-92 (246) 79 >2wvv_A Alpha-L-fucosidase; al 46.7 20 0.00059 17.1 3.2 215 54-295 80-340 (351) 80 >1lt8_A Betaine-homocysteine m 46.2 22 0.00066 16.7 6.9 20 280-299 276-295 (406) 81 >3i09_A Periplasmic branched-c 46.0 22 0.00067 16.7 9.9 119 115-254 3-122 (191) 82 >3khd_A Pyruvate kinase; malar 45.7 23 0.00067 16.7 8.0 38 138-176 74-114 (288) 83 >1pc2_A Mitochondria fission p 45.7 5.7 0.00017 20.9 0.3 41 276-318 5-55 (64) 84 >3a1c_A Probable copper-export 44.6 24 0.0007 16.6 6.4 24 151-176 46-69 (165) 85 >2w7y_A FCSSBP, probable sugar 44.2 24 0.00071 16.5 4.7 94 136-229 44-147 (185) 86 >1g94_A Alpha-amylase; beta-al 43.7 24 0.00072 16.5 6.9 115 162-290 1-129 (277) 87 >3hqn_D Pyruvate kinase, PK; T 43.6 24 0.00072 16.5 7.6 56 138-193 48-112 (261) 88 >3bi8_A Dihydrodipicolinate sy 43.3 25 0.00073 16.4 8.1 25 114-138 81-105 (291) 89 >1vdh_A Muconolactone isomeras 42.9 5.9 0.00018 20.8 0.0 68 236-308 76-150 (249) 90 >3e96_A Dihydrodipicolinate sy 42.3 25 0.00075 16.3 8.3 105 174-297 32-138 (217) 91 >1m65_A Hypothetical protein Y 42.3 24 0.00072 16.5 3.1 179 116-309 18-197 (245) 92 >2e28_A Pyruvate kinase, PK; a 42.2 26 0.00076 16.3 7.0 148 137-302 30-216 (243) 93 >2vc6_A MOSA, dihydrodipicolin 42.1 26 0.00076 16.3 8.4 29 235-263 72-101 (236) 94 >1h5y_A HISF; histidine biosyn 42.0 2.2 6.4E-05 23.9 -2.3 136 113-265 30-175 (253) 95 >1xg4_A Probable methylisocitr 41.8 26 0.00077 16.3 10.8 142 121-263 29-186 (295) 96 >3lab_A Putative KDPG (2-keto- 41.5 26 0.00077 16.3 6.6 167 112-316 21-201 (217) 97 >2hmc_A AGR_L_411P, dihydrodip 41.5 26 0.00078 16.3 11.4 128 173-321 45-177 (235) 98 >2rfg_A Dihydrodipicolinate sy 41.1 27 0.00078 16.2 8.1 46 213-261 53-99 (243) 99 >1oy0_A Ketopantoate hydroxyme 40.9 27 0.00079 16.2 3.3 120 53-194 22-155 (234) 100 >2r8w_A AGR_C_1641P; APC7498, 40.3 27 0.00081 16.1 9.0 15 113-127 84-98 (280) 101 >3hgj_A Chromate reductase; TI 39.9 28 0.00082 16.1 13.5 146 111-267 140-321 (349) 102 >1xky_A Dihydrodipicolinate sy 39.8 28 0.00082 16.1 8.1 29 235-263 84-113 (219) 103 >3d3j_A Enhancer of mRNA-decap 39.8 22 0.00065 16.8 2.5 143 106-263 72-240 (306) 104 >3ler_A DHDPS, dihydrodipicoli 39.1 28 0.00084 16.0 8.8 27 114-140 88-114 (301) 105 >3daq_A DHDPS, dihydrodipicoli 39.0 29 0.00084 16.0 7.7 89 173-271 21-113 (229) 106 >1vhn_A Putative flavin oxidor 38.8 15 0.00046 17.9 1.6 129 166-303 64-213 (235) 107 >1u83_A Phosphosulfolactate sy 38.7 29 0.00085 16.0 3.4 24 120-143 140-163 (276) 108 >1oya_A OLD yellow enzyme; oxi 38.4 29 0.00086 15.9 6.0 159 145-305 92-284 (308) 109 >2j13_A Polysaccharide deacety 38.2 29 0.00087 15.9 3.0 165 53-269 68-244 (247) 110 >3ez4_A 3-methyl-2-oxobutanoat 38.1 9 0.00027 19.5 0.3 226 54-322 12-256 (269) 111 >2jbm_A Nicotinate-nucleotide 37.2 30 0.0009 15.8 5.8 90 151-265 20-110 (113) 112 >2dp3_A Triosephosphate isomer 37.0 30 0.0009 15.8 6.3 42 121-162 80-121 (257) 113 >3lkb_A Probable branched-chai 37.0 30 0.0009 15.8 9.0 148 114-286 2-159 (172) 114 >3c7b_B Sulfite reductase, dis 37.0 28 0.00084 16.0 2.7 47 91-137 40-86 (129) 115 >2z8f_A Galacto-N-biose/lacto- 36.7 31 0.00091 15.8 3.6 66 149-214 31-102 (195) 116 >2v9d_A YAGE; dihydrodipicolin 36.6 31 0.00092 15.7 7.8 33 111-143 79-112 (278) 117 >1icp_A OPR1, 12-oxophytodieno 36.3 31 0.00092 15.7 3.5 202 53-268 92-334 (376) 118 >1twu_A Hypothetical protein Y 36.3 31 0.00093 15.7 2.9 36 268-303 1-36 (66) 119 >1ivn_A Thioesterase I; hydrol 36.1 32 0.00093 15.7 8.7 98 87-184 2-121 (190) 120 >1uok_A Oligo-1,6-glucosidase; 36.0 32 0.00094 15.7 4.7 48 115-162 30-92 (206) 121 >2dh2_A 4F2 cell-surface antig 36.0 32 0.00094 15.7 5.6 17 115-131 81-97 (329) 122 >1wzl_A Alpha-amylase II; pull 35.6 32 0.00095 15.6 4.8 56 112-167 93-172 (321) 123 >2iye_A Copper-transporting AT 35.3 15 0.00043 18.1 1.0 81 152-261 43-123 (164) 124 >3b40_A PVDM, probable dipepti 35.2 33 0.00096 15.6 7.3 212 54-304 99-358 (417) 125 >3e49_A Uncharacterized protei 34.8 33 0.00098 15.6 7.7 88 109-199 24-117 (311) 126 >1eh9_A Glycosyltrehalose treh 34.6 33 0.00098 15.5 6.0 26 301-326 282-308 (352) 127 >1a0c_A Xylose isomerase; keto 34.4 33 0.00098 15.6 2.7 199 54-260 82-332 (438) 128 >1gcy_A Glucan 1,4-alpha-malto 34.4 33 0.00099 15.5 5.9 26 144-169 88-113 (337) 129 >3ju2_A Uncharacterized protei 34.1 34 0.001 15.5 6.1 139 116-260 84-244 (284) 130 >1v0z_A Neuraminidase; glycosi 34.0 13 0.0004 18.3 0.7 38 76-113 25-64 (98) 131 >1qho_A Alpha-amylase; glycosi 33.8 34 0.001 15.4 4.7 19 114-132 106-124 (333) 132 >1jg8_A L-ALLO-threonine aldol 33.7 34 0.001 15.4 4.2 51 233-290 45-98 (108) 133 >1h7n_A 5-aminolaevulinic acid 33.6 34 0.001 15.4 5.9 193 114-321 32-305 (307) 134 >2ka6_B Signal transducer and 33.0 26 0.00077 16.3 2.0 32 267-302 12-43 (45) 135 >3flu_A DHDPS, dihydrodipicoli 32.7 36 0.0011 15.3 8.4 36 113-148 86-121 (297) 136 >1lld_A L-lactate dehydrogenas 32.7 36 0.0011 15.3 3.1 34 138-171 91-124 (319) 137 >1e0t_A Pyruvate kinase, PK; p 32.6 36 0.0011 15.3 8.2 163 138-314 30-228 (250) 138 >1ua7_A Alpha-amylase; beta-al 32.1 36 0.0011 15.3 4.9 25 145-169 71-95 (344) 139 >1o94_A Tmadh, trimethylamine 32.0 36 0.0011 15.2 6.2 150 110-267 136-324 (343) 140 >1ypx_A Putative vitamin-B12 i 32.0 36 0.0011 15.2 2.8 55 233-291 290-357 (375) 141 >3i45_A Twin-arginine transloc 31.6 37 0.0011 15.2 8.6 129 116-267 4-135 (200) 142 >2gou_A Oxidoreductase, FMN-bi 31.6 37 0.0011 15.2 3.3 85 179-265 123-226 (323) 143 >3e02_A Uncharacterized protei 31.4 37 0.0011 15.2 9.0 158 109-274 24-214 (311) 144 >3gza_A Putative alpha-L-fucos 31.1 38 0.0011 15.1 5.7 80 51-145 58-138 (345) 145 >2vxh_A Chlorite dismutase; he 30.7 38 0.0011 15.1 4.6 73 232-309 75-156 (251) 146 >3ktw_A SRP19, signal recognit 30.7 38 0.0011 15.1 3.2 32 106-137 32-65 (109) 147 >2qyg_A Ribulose bisphosphate 30.5 22 0.00066 16.8 1.3 141 109-255 28-200 (288) 148 >1vr6_A Phospho-2-dehydro-3-de 30.4 39 0.0011 15.1 6.8 125 113-259 32-157 (265) 149 >3l6w_A Hemocyanin 1; cupredox 30.0 39 0.0012 15.0 4.2 56 77-145 27-88 (200) 150 >1t7l_A 5-methyltetrahydropter 29.5 18 0.00052 17.5 0.7 236 37-282 39-358 (391) 151 >3dz1_A Dihydrodipicolinate sy 29.4 40 0.0012 14.9 8.4 189 113-319 86-298 (313) 152 >1qwg_A PSL synthase;, (2R)-ph 29.0 41 0.0012 14.9 6.0 139 113-268 82-235 (251) 153 >1vzw_A Phosphoribosyl isomera 28.3 39 0.0011 15.1 2.2 168 117-314 33-207 (244) 154 >1l6s_A Porphobilinogen syntha 28.2 42 0.0012 14.8 6.3 199 115-318 32-294 (298) 155 >3dlu_A SRP19, signal recognit 28.1 42 0.0012 14.8 4.5 24 113-136 29-52 (106) 156 >3blx_B Isocitrate dehydrogena 27.8 43 0.0013 14.8 4.6 113 58-173 101-222 (354) 157 >2poc_A D-fructose-6-, isomera 26.4 40 0.0012 15.0 2.0 30 238-267 73-102 (161) 158 >3c9h_A ABC transporter, subst 26.4 45 0.0013 14.6 4.0 57 145-201 41-100 (355) 159 >3eyp_A Putative alpha-L-fucos 26.3 45 0.0013 14.6 9.1 47 118-164 56-119 (327) 160 >1xrs_B D-lysine 5,6-aminomuta 26.2 45 0.0013 14.6 7.1 85 217-326 77-165 (168) 161 >2yxg_A DHDPS, dihydrodipicoli 26.1 46 0.0013 14.6 6.5 80 112-194 78-160 (289) 162 >3cit_A Sensor histidine kinas 25.9 10 0.00031 19.1 -1.0 16 95-110 36-51 (160) 163 >1wpc_A Glucan 1,4-alpha-malto 25.7 46 0.0014 14.5 5.3 22 241-262 109-131 (267) 164 >1tv5_A Dhodehase, dihydroorot 25.5 23 0.00068 16.6 0.7 27 237-263 251-277 (390) 165 >1w1z_A Delta-aminolevulinic a 25.4 47 0.0014 14.5 6.5 201 115-319 32-296 (297) 166 >1i60_A IOLI protein; beta bar 25.3 47 0.0014 14.5 6.8 192 43-269 37-250 (278) 167 >1ulv_A Glucodextranase; GH fa 24.9 48 0.0014 14.4 2.5 26 234-259 229-254 (275) 168 >3hut_A Putative branched-chai 24.7 48 0.0014 14.4 9.8 113 117-251 3-116 (119) 169 >2wkj_A N-acetylneuraminate ly 24.6 48 0.0014 14.4 5.3 106 174-298 31-140 (218) 170 >1j8f_A SIRT2, sirtuin 2, isof 24.5 22 0.00064 16.8 0.4 135 109-268 1-160 (251) 171 >1xxx_A DHDPS, dihydrodipicoli 24.1 49 0.0015 14.3 5.4 48 213-263 67-115 (219) 172 >2btm_A TIM, protein (trioseph 24.1 50 0.0015 14.3 5.5 15 122-136 79-93 (252) 173 >3h5t_A Transcriptional regula 23.9 36 0.0011 15.3 1.4 44 248-298 10-54 (60) 174 >1d2v_C Myeloperoxidase; heme- 23.9 13 0.00038 18.4 -0.9 63 242-312 56-125 (144) 175 >1y8q_A Ubiquitin-like 1 activ 23.5 51 0.0015 14.2 4.6 95 119-230 49-154 (346) 176 >1yya_A Triosephosphate isomer 23.4 51 0.0015 14.2 7.6 15 122-136 79-93 (250) 177 >1ney_A TIM, triosephosphate i 23.3 51 0.0015 14.2 7.1 40 122-161 79-118 (247) 178 >2qv5_A AGR_C_5032P, uncharact 23.2 51 0.0015 14.2 2.8 43 233-275 210-256 (261) 179 >2zkr_o 60S ribosomal protein 23.2 37 0.0011 15.2 1.4 76 249-327 54-130 (133) 180 >1z69_A COG2141, coenzyme F420 23.1 52 0.0015 14.2 3.0 31 233-266 278-308 (327) 181 >1ivd_A Influenza A subtype N2 23.1 42 0.0012 14.8 1.6 35 79-113 93-129 (164) 182 >3gg8_A Pyruvate kinase; malar 22.6 53 0.0016 14.1 6.7 38 138-176 64-104 (277) 183 >1xp3_A Endonuclease IV; NFO, 22.6 53 0.0016 14.1 7.3 180 50-259 56-262 (307) 184 >2z8f_A Galacto-N-biose/lacto- 22.4 53 0.0016 14.1 2.2 45 240-288 20-64 (122) 185 >1w0d_A 3-isopropylmalate dehy 22.3 53 0.0016 14.1 5.5 120 53-173 79-212 (337) 186 >2rbb_A Glyoxalase/bleomycin r 22.2 54 0.0016 14.1 4.3 31 232-262 6-37 (73) 187 >3i3v_A Probable secreted solu 22.2 54 0.0016 14.1 3.4 25 241-265 23-47 (105) 188 >1itu_A Renal dipeptidase; gly 22.1 54 0.0016 14.0 11.3 157 120-298 135-318 (369) 189 >1zco_A 2-dehydro-3-deoxyphosp 22.1 54 0.0016 14.0 6.3 121 114-259 35-159 (262) 190 >2ewd_A Lactate dehydrogenase, 22.0 54 0.0016 14.0 4.2 41 129-169 72-119 (317) 191 >1j0h_A Neopullulanase; beta-a 21.9 54 0.0016 14.0 6.0 18 252-269 319-336 (375) 192 >1xqa_A Glyoxalase/bleomycin r 21.9 47 0.0014 14.4 1.7 27 236-262 5-32 (55) 193 >3epo_A Thiamine biosynthesis 21.5 55 0.0016 14.0 2.8 49 248-308 214-264 (327) 194 >2hfq_A Hypothetical protein; 21.4 41 0.0012 14.9 1.3 27 94-129 71-97 (109) 195 >3c01_E Surface presentation o 21.1 39 0.0011 15.1 1.1 30 283-312 27-56 (62) 196 >1mxg_A Alpha amylase; hyperth 20.9 57 0.0017 13.9 5.6 30 144-174 82-111 (279) 197 >1jqn_A Pepcase, PEPC, phospho 20.8 57 0.0017 13.9 7.5 48 209-258 221-268 (420) 198 >2ck3_D ATP synthase beta chai 20.7 57 0.0017 13.9 3.9 19 167-185 171-189 (280) 199 >1a53_A IGPS, indole-3-glycero 20.6 58 0.0017 13.8 3.9 130 108-268 30-159 (223) 200 >3cuq_A Vacuolar-sorting prote 20.5 58 0.0017 13.8 2.2 30 241-270 55-88 (91) 201 >1uf3_A Hypothetical protein T 20.4 58 0.0017 13.8 3.6 71 84-180 3-75 (228) 202 >2wqp_A Polysialic acid capsul 20.3 58 0.0017 13.8 6.0 178 113-315 32-257 (276) 203 >1v93_A 5,10-methylenetetrahyd 20.1 59 0.0017 13.8 14.1 72 212-298 124-201 (296) 204 >3kws_A Putative sugar isomera 20.1 59 0.0017 13.8 9.1 138 119-263 107-261 (287) 205 >1ht6_A AMY1, alpha-amylase is 20.1 59 0.0017 13.8 5.7 52 114-165 19-85 (288) No 1 >>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:) Probab=99.71 E-value=3.5e-17 Score=142.46 Aligned_cols=270 Identities=13% Similarity=0.151 Sum_probs=204.2 Q ss_pred CCCCCCCCCHHHCCCCCCCH--HHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCC Q ss_conf 88888898824500179986--6899999999749823652578878767508972--6999866522353522344678 Q gi|254780676|r 33 PDTEKMQKPDWIRVRAPVSS--GYKETYNILRSRNLTTVCEEAGCPNIGECWNKNH--ATFMILGAICTRACTFCNVATG 108 (329) Q Consensus 33 p~~~~~~kP~Wlk~~~p~~~--~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gt--ATFMilG~~CTR~C~FC~V~~G 108 (329) ++.....+.+|+.-+...+. ...+++.++....++.+.+.+.+++...++.... +.+++...-|..+|.||.+..+ T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~ 88 (369) T 1r30_A 9 HDYDIPTTENLYFQGSAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSR 88 (369) T ss_dssp ------------------CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTT T ss_pred CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 45678747777640146668999999999985999999999999999866989799986877448999987922998341 Q ss_pred ------CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH Q ss_conf ------99888823579999999970775189850544534532589999999999853358689981546234468999 Q gi|254780676|r 109 ------KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALE 182 (329) Q Consensus 109 ------~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~ 182 (329) ++..++++|-.+.++.++.+|.+++.+++-.= .+.......+.+.++..+.....+.+-... -..+.++ T Consensus 89 ~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~i~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 163 (369) T 1r30_A 89 YKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK-NPHERDMPYLEQMVQGVKAMGLEACMTLGT----LSESQAQ 163 (369) T ss_dssp SCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS-SCCTTTHHHHHHHHHHHHHTTSEEEEECSS----CCHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCC----CCHHHHH T ss_conf 89998754557878999999999973997999987358-865269999999999865238445305577----8999999 Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE Q ss_conf 87410702332013830002756389703589999999999708916701404887642068899999999966993997 Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329) .+.+++.+.+..++++.++.+..++.+.+|++.++.++.+++.|. .+...+|+|.||+.+|+.++++.+++.|++..+ T Consensus 164 ~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~ 241 (369) T 1r30_A 164 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI--KVCSGGIVGLGETVKDRAGLLLQLANLPTPPES 241 (369) T ss_dssp HHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHC--EEECCEEECSSCCHHHHHHHHHHHHSSSSCCSE T ss_pred HHHHCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCE T ss_conf 998478608975302020122046777889999999999998699--165214836999999999999999865889888 Q ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC Q ss_conf 50222786100780002384699999999997496243404830010 Q gi|254780676|r 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS 309 (329) Q Consensus 263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS 309 (329) |..+.-.-....+..++..+..++..+.++....+......++.+++ T Consensus 242 i~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (369) T 1r30_A 242 VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGR 288 (369) T ss_dssp EEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSG T ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECH T ss_conf 76051068999864446799999999999999997888762686125 No 2 >>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Probab=99.68 E-value=1.5e-16 Score=138.05 Aligned_cols=265 Identities=15% Similarity=0.146 Sum_probs=209.2 Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEE-EEECCCCCCCCCCCCCCCCCCC----CCC Q ss_conf 88245001799866899999999749823652578878767508972699-9866522353522344678998----888 Q gi|254780676|r 40 KPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATF-MILGAICTRACTFCNVATGKPQ----PLD 114 (329) Q Consensus 40 kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATF-MilG~~CTR~C~FC~V~~G~P~----~~D 114 (329) .++++....+..+.+..+........+.++++.+.|++...++....... +-...-|..+|.||++..+.+. ... T Consensus 6 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~gC~~~C~fC~~~~~~~~~~~~~~~ 85 (348) T 3iix_A 6 ILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMT 85 (348) T ss_dssp HHHHHHTTCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCC T ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECC T ss_conf 99998658999999999962368557999999999999986799769999998778869989579986668986523145 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH Q ss_conf 23579999999970775189850544534532589999999999853358689981546234468999874107023320 Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329) ++|-.+.++..+..|...+.++.=+ -...+...+...++.++.....+.+.... -..+.++.+.++|.+.++. T Consensus 86 ~e~i~~~i~~~~~~g~~~~~~~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~~v~i 158 (348) T 3iix_A 86 PEEIVERARLAVQFGAKTIVLQSGE---DPYXMPDVISDIVKEIKKMGVAVTLSLGE----WPREYYEKWKEAGADRYLL 158 (348) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESC---CGGGTTHHHHHHHHHHHTTSCEEEEECCC----CCHHHHHHHHHHTCCEEEC T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC---CCCCCHHHHHHHHHHHHCCCHHCCCCCCC----HHHHHHHHHHHHHCEEEEE T ss_conf 7889999999997188256540265---23452788889988640120100234441----1689999998742627884 Q ss_pred CCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC Q ss_conf 13830-0027563897035899999999997089167014048876-420688999999999669939975022278610 Q gi|254780676|r 195 NLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329) Q Consensus 195 NiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329) ++|+. ++++..++++.++++.++.++.+++.|.. ...++|+|+ ||+.+++.++++-+++.|++.+.+-+|..--.. T Consensus 159 ~les~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~--~~~~~i~g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 236 (348) T 3iix_A 159 RHETANPVLHRKLRPDTSFENRLNXLLTLKELGYE--TGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDT 236 (348) T ss_dssp CCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCE--EEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTS T ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHHCEECCCEEEECCCC T ss_conf 44423345521000033201567777787876531--2410576277656688888899998755334055101235999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH Q ss_conf 07800023846999999999974962434048300103189 Q gi|254780676|r 273 HHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAG 313 (329) Q Consensus 273 h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~ 313 (329) .+.-..+..|+++..+.............+....+..++.. T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (348) T 3iix_A 237 PLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPG 277 (348) T ss_dssp TTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHCCHH T ss_conf 75568998989999999999987898672552056451989 No 3 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Probab=99.53 E-value=1.7e-13 Score=116.43 Aligned_cols=212 Identities=14% Similarity=0.149 Sum_probs=163.9 Q ss_pred EEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCEEEEECCCCCCC Q ss_conf 3652578878767508972699986652235352234467899888823579999999970----775189850544534 Q gi|254780676|r 68 TVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM----KLSHVVITSVDRDDL 143 (329) Q Consensus 68 TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l----~Lk~vViTSV~RDDL 143 (329) .+||.+.||-.+.++......++....-|..+|.||....+.....+..-+..+++.+..+ +.+-+++|. ++- T Consensus 3 ~l~e~~~~~~~~~~~~~~~~~~i~~T~~Cn~~C~~C~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~g---gep 79 (248) T 2a5h_A 3 PLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQSDDSXPXERIDKAIDYIRNTPQVRDVLLSG---GDA 79 (248) T ss_dssp TTCTTTSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE---SCT T ss_pred CCCCCCCCCCCCCEEECCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC---CCC T ss_conf 65311135688731333754799841430100451254233576334214999999999998389836999856---985 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 53258999999999985335868998154623446899987410702332013830002756389703589999999999 Q gi|254780676|r 144 DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVK 223 (329) Q Consensus 144 ~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK 223 (329) .-.+..++++.++++++..+...+-+.+....-..+.+..+..++...++ ....-......+..|.+.++.++.++ T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~i~~l~ 155 (248) T 2a5h_A 80 LLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNXLKKYH----PVWLNTHFNHPNEITEESTRACQLLA 155 (248) T ss_dssp TSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGC----SEEEEECCCSGGGCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 62688999999999970899754888705542461656899998530266----48997214765443034899999999 Q ss_pred HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHH Q ss_conf 708916701404887642068899999999966993997502227861007800023846999 Q gi|254780676|r 224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFK 286 (329) Q Consensus 224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~ 286 (329) +.++.+...+.+|.|+||+.+|+.++++.+++.|++.+.+.+|.......+.-.....++++. T Consensus 156 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~t~~~~~~~~~~~e~~ 218 (248) T 2a5h_A 156 DAGVPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEII 218 (248) T ss_dssp HTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHH T ss_pred HCCCEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCHHHHHHHH T ss_conf 779869874616786158778999999999848838999761267752320378899999999 No 4 >>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364) Probab=99.51 E-value=4e-14 Score=120.91 Aligned_cols=274 Identities=9% Similarity=0.082 Sum_probs=188.3 Q ss_pred CCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH- Q ss_conf 8898824500179986689999999974982365257887876750897269998665223535223446789988882- Q gi|254780676|r 37 KMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDP- 115 (329) Q Consensus 37 ~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~- 115 (329) ..+.|+|++.-...++.+..+.. ...++..+....+++...+|..++..+++...-|..+|.||++.......... T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGC~~~C~fC~~~~~~~~~~~~~ 82 (364) T 1olt_A 6 IDWDLALIQKYNYSGPRYTSYPT---ALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKA 82 (364) T ss_dssp CCCCTTTC-CC------CCSSSC---GGGCBTTCCHHHHHHHHTTCTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHH T ss_pred CCCCHHHHHHHCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCHH T ss_conf 14279999973899998778999---200577899999999996099995399997189898889998825658885519 Q ss_pred --------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC Q ss_conf --------357999999997077518985054453453258999999999985335868998154623446899987410 Q gi|254780676|r 116 --------QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA 187 (329) Q Consensus 116 --------~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A 187 (329) .|-.+.+......|..++.++.-+--.+++.-..-+.+.|+++....+.....+.+....-+.+.++.+.++ T Consensus 83 ~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 162 (364) T 1olt_A 83 DQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAE 162 (364) T ss_dssp HHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHC T ss_conf 99999999999997766389974699974875165999999999999998657776621479834998727789999737 Q ss_pred CCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHCCCCEEECCH Q ss_conf 702332013830-002756389703589999999999708916701404887-642068899999999966993997502 Q gi|254780676|r 188 KPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG-LGETRNEILQLMDDLRTADVDFLTMGQ 265 (329) Q Consensus 188 ~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG-LGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329) |.+.+.-.+||. ++....++.+.+|++-++.++.+++.|... ....+|+| -|||.+++.++++.+++++++.+.|.. T Consensus 163 G~~~i~ig~es~~~~~~~~~~k~~~~~~~~~~i~~~~~~g~~~-v~~~~i~g~p~et~~~~~~~l~~~~~~~~~~~~i~~ 241 (364) T 1olt_A 163 GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTS-TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFN 241 (364) T ss_dssp TCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCS-CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9987998368686788866406687899999999999842553-403404779984267789999999840898334431 Q ss_pred HCC-C-CCCCCC---CCCCCC----HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH Q ss_conf 227-8-610078---000238----469999999999749624340483001031899 Q gi|254780676|r 266 YLQ-P-TRKHHK---VESFVT----PQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD 314 (329) Q Consensus 266 YL~-P-s~~h~p---V~ryv~----P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e 314 (329) |.. | |..+.. ...... ...+....+...+.|+..+.....++...-... T Consensus 242 ~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (364) T 1olt_A 242 YAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAV 299 (364) T ss_dssp CCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETTEEECTTSHHHH T ss_pred CEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH T ss_conf 1007842776623322235205899999999999999769311234431367713455 No 5 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=99.08 E-value=9.5e-10 Score=89.99 Aligned_cols=209 Identities=9% Similarity=0.037 Sum_probs=161.3 Q ss_pred EEEECCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 9986652235352234467----899888823579999999970775189850544534532589999999999853358 Q gi|254780676|r 89 FMILGAICTRACTFCNVAT----GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS 164 (329) Q Consensus 89 FMilG~~CTR~C~FC~V~~----G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~ 164 (329) ++....-|.-+|.||.... +....++.++.....+.+.+.+...+++.+..- .-|--....+...++.+++. + T Consensus 22 ~i~~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-Gep~l~~~~~~~l~~~~~~~--~ 98 (245) T 3c8f_A 22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRACKKE--G 98 (245) T ss_dssp EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGGGHHHHHHHHHHHHTT--T T ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHH--C T ss_conf 99986896887989998033186799178899999999999998515886687156-77442678999999998863--5 Q ss_pred CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHH Q ss_conf 68998154623446899987410702332013830002756389703589999999999708916701404887642068 Q gi|254780676|r 165 TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRN 244 (329) Q Consensus 165 ~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~e 244 (329) ..+.+++--..-+.+.++.+..++.+.+...+++...-....+.+.++++.++.|+..++.+..+...+-++.|.+++.+ T Consensus 99 ~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (245) T 3c8f_A 99 IHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDD 178 (245) T ss_dssp CCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHH T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH T ss_conf 71466137731144555654213321011450010067888762733266676654542255513776632389889999 Q ss_pred HHHHHHHHHHHCCCCEEECCHHCCCCC----------CCCCCCCCCCHHHHHHHHHHHHHCCCCEE Q ss_conf 899999999966993997502227861----------00780002384699999999997496243 Q gi|254780676|r 245 EILQLMDDLRTADVDFLTMGQYLQPTR----------KHHKVESFVTPQDFKSYETIAYSKGFLMV 300 (329) Q Consensus 245 Ei~e~l~DLr~~gvdilTiGQYL~Ps~----------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V 300 (329) ++.++++-+++.|.+...--+.+.|.. .+++..+-...+.++.+.+++.+.||..+ T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~v~ 244 (245) T 3c8f_A 179 SAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM 244 (245) T ss_dssp HHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 999999999857997558871476256424766285454348998999999999999998599277 No 6 >>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Probab=98.93 E-value=1.7e-08 Score=81.12 Aligned_cols=212 Identities=14% Similarity=0.097 Sum_probs=150.8 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCC----CCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH---------- Q ss_conf 7269998665223535223446789----9888---8235799999999707751898505445345325---------- Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVATGK----PQPL---DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG---------- 147 (329) Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~G~----P~~~---D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG---------- 147 (329) +..-++....-|.-+|.||.+..+. .... ++++-..-+..+...+.+..++++....++..+| T Consensus 70 ~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (342) T 2yx0_A 70 RCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISL 149 (342) T ss_dssp GEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECS T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEC T ss_conf 44887684125277798899988777775554555798999999999999987653267530267777514875799946 Q ss_pred ------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCC---CCCCCHHHHHHH Q ss_conf ------899999999998533586899815462344689998741070233201383-0002756---389703589999 Q gi|254780676|r 148 ------AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLM---VRPGARYFHSLR 217 (329) Q Consensus 148 ------A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~---VRp~a~Y~rSL~ 217 (329) ..++.+.++.+++... .+-+.++.+.-..+....+..++.+.++=-++. .+..+.. ......|++-++ T Consensus 150 ~gep~~~~~~~~~~~~~~~~~~--~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (342) T 2yx0_A 150 SGEPMLYPYMGDLVEEFHKRGF--TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILR 227 (342) T ss_dssp SSCGGGSTTHHHHHHHHHHTTC--EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHH T ss_conf 8775454409999999986397--28995488772589998864257757996278999899998718777778999999 Q ss_pred HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 999999708916701404887642068899999999966993997502227-8-61007800023846999999999974 Q gi|254780676|r 218 LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVESFVTPQDFKSYETIAYSK 295 (329) Q Consensus 218 vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329) .++.+++.+. .+...+++.-||+++|+.++++-+.+.|++.+++-||.. | ++...--..+.+++++.++.+...+. T Consensus 228 ~i~~l~~~g~--~v~~~~~~~~g~n~~~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (342) T 2yx0_A 228 FLELMRDLPT--RTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKH 305 (342) T ss_dssp HHHHHTTCSS--EEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTT T ss_pred HHHHHHHCCC--CEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9999996699--88999998689887889999999987499889986525568860112401499889999999999987 Q ss_pred CCCEE Q ss_conf 96243 Q gi|254780676|r 296 GFLMV 300 (329) Q Consensus 296 Gf~~V 300 (329) +.... T Consensus 306 ~~~~~ 310 (342) T 2yx0_A 306 LPGYH 310 (342) T ss_dssp CTTEE T ss_pred CCCCE T ss_conf 26966 No 7 >>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313) Probab=98.78 E-value=4.3e-07 Score=71.24 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=152.7 Q ss_pred EEECCCCCCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 98665223535223446789---------988882357999999997077518985054453453258999999999985 Q gi|254780676|r 90 MILGAICTRACTFCNVATGK---------PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRE 160 (329) Q Consensus 90 MilG~~CTR~C~FC~V~~G~---------P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~ 160 (329) ....+.|.-+|.||...... +..++.+|-.+.++..+..+...++++.=.-- -...|.+-|+.+++ T Consensus 18 i~~t~~Cn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GGEP~-----l~~~~~~~i~~~~~ 92 (313) T 1tv8_A 18 LSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPL-----MRRDLDVLIAKLNQ 92 (313) T ss_dssp EECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGG-----GSTTHHHHHHHHTT T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-----CCCHHHHHHHHHHH T ss_conf 9842401787968897500677776576103589999999999999769819974798400-----26106999998640 Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEE Q ss_conf 335868998154623446899987410702332013830-002756389-703589999999999708916701404887 Q gi|254780676|r 161 SAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329) Q Consensus 161 ~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329) ..+...+-+.+... -..+.+..+++++.+.+...+++. +..+..++. ...|++.++.++.+++.|.. ....+++. T Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~isi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~--~~~~~~~~ 169 (313) T 1tv8_A 93 IDGIEDIGLTTNGL-LLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN--VKVNVVIQ 169 (313) T ss_dssp CTTCCEEEEEECST-THHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCE--EEEEEEEC T ss_pred CCCCCCEECCCCCC-CCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHCCCC--EEEEEEEC T ss_conf 25443100133312-3406899999839998872255788888756200477521012689999985998--33636861 Q ss_pred EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 64206889999999996699399750222786100780002384699999999997 Q gi|254780676|r 239 LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS 294 (329) Q Consensus 239 LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~ 294 (329) .|++.+++.++++-+.+.|++.+.+..+.........-.....++.+......... T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (313) T 1tv8_A 170 KGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE 225 (313) T ss_dssp TTTTGGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSC T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 67550012899999985274302325520554555332246778999888887435 No 8 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:113-234) Probab=97.82 E-value=4.6e-05 Score=56.89 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=81.7 Q ss_pred HCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C- Q ss_conf 01383-00027563897035899999999997089167014048876-42068899999999966993997502227-8- Q gi|254780676|r 194 HNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P- 269 (329) Q Consensus 194 HNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P- 269 (329) =.+|| .++..+.+..+++.++.++.++.++++|+.+...+.+|+|+ |||+|++.++++.+.+.+.|.+++.+|.. | T Consensus 7 iGieS~~~~vl~~~~r~~~~~~~~~~~~~l~~~g~~~~i~~~~i~GlPget~e~~~~t~~~l~~l~~d~i~~~~~~~~~g 86 (122) T 2qgq_A 7 VPVQHGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEG 86 (122) T ss_dssp CCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC--- T ss_pred CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHCCEEEEHHH T ss_conf 23344667777776437634432357767877489963887787617988737899989998764988100210232222 Q ss_pred CCCCCCCCCCCCHHH---HHHHHHHHHHCCC Q ss_conf 610078000238469---9999999997496 Q gi|254780676|r 270 TRKHHKVESFVTPQD---FKSYETIAYSKGF 297 (329) Q Consensus 270 s~~h~pV~ryv~P~e---F~~~~~~a~~~Gf 297 (329) |+-+-...++..+.. ++.+.....++|+ T Consensus 87 T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (122) T 2qgq_A 87 TVAFNLKEKVDPEXAKRRQEELLLLQAEISN 117 (122) T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 0120000124502346677776776530112 No 9 >>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=97.32 E-value=0.00099 Score=47.50 Aligned_cols=187 Identities=13% Similarity=0.162 Sum_probs=111.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH Q ss_conf 82357999999997077518985054453453258999999999985335868998154623446899987410702332 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN 193 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n 193 (329) ...+...........+.+++|+++----=+ ..+|.+.++.+++....+.| .+-...-.......+.....++.. T Consensus 112 ~~~~~i~~~~~~~~~~~~~~~~~~GGepll----~~~~~~~~~~~~~~~~~~~i--~TNG~~~~~~~~~~l~~~~is~~~ 185 (311) T 2z2u_A 112 GVLDRVGEKKFKEALEPKHVAISLSGEPTL----YPYLDELIKIFHKNGFTTFV--VSNGILTDVIEKIEPTQLYISLDA 185 (311) T ss_dssp GGHHHHCHHHHHHHTSCCEEEECSSSCGGG----STTHHHHHHHHHHTTCEEEE--EECSCCHHHHHHCCCSEEEEECCC T ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCC----CCCHHHHHHHHHHHCCHHEE--ECCCCCHHHHHHCCCCEEEEEECC T ss_conf 666541056677642775799815887410----02799999998630302100--005542367762366168987357 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC--CC Q ss_conf 0138300027563897035899999999997089167014048876420688999999999669939975022278--61 Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP--TR 271 (329) Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P--s~ 271 (329) ..-|+-.++++ +....|++-++.++.+++..+ +...+-++ -+..+|+.+.++-+.+.|++.+.+.+|..- .. T Consensus 186 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-v~i~~~i~---~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311) T 2z2u_A 186 YDLDSYRRICG--GKKEYWESILNTLDILKEKKR-TCIRTTLI---RGYNDDILKFVELYERADVHFIELKSYMHVGYSQ 259 (311) T ss_dssp SSTTTC----C--CCHHHHHHHHHHHHHHTTSSS-EEEEEEEC---TTTTCCGGGTHHHHHHHTCSEEEEEECC------ T ss_pred CCHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCC-EEEEEEEE---CCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCC T ss_conf 99999999868--765639999999999986698-59999726---6865289999999874598889996007414663 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-CCEE------ECCCCCCCCHHH Q ss_conf 0078000238469999999999749-6243------404830010318 Q gi|254780676|r 272 KHHKVESFVTPQDFKSYETIAYSKG-FLMV------SASPLTRSSYHA 312 (329) Q Consensus 272 ~h~pV~ryv~P~eF~~~~~~a~~~G-f~~V------~SgPlVRSSY~A 312 (329) .+....+..+++++.++.+...+.| +..+ ++|.+.|..+.| T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 307 (311) T 2z2u_A 260 KRLKKEDMLQHDEILKLAKMLDENSSYKLIDDSEDSRVALLQNENRKI 307 (311) T ss_dssp ------CCCCHHHHHHHHHHHHTSSSEEEEEEEGGGTEEEEEETTSCC T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCC T ss_conf 316300399899999999998754697152477874589985567777 No 10 >>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* (A:1-311) Probab=96.40 E-value=0.057 Score=35.04 Aligned_cols=143 Identities=11% Similarity=-0.008 Sum_probs=110.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 98888235799999999707751898505445345325899999999998533586899815462344689998741070 Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329) Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329) ...+..++-..++++..++|..++-+.+...- ....+.++++-.......+.... .-+...++.+..++. T Consensus 55 ~~~~~~e~k~~i~~~l~~~Gv~~iE~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 124 (311) T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTSPVAS-------EQSRQDCEAICKLGLKCKILTHI---RCHXDDARVAVETGV 124 (311) T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECCTTSC-------HHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHHCCCCCEEEEC---CCCHHHHHHHHHCCC T ss_conf 99899999999999999809798999778478-------36799999998716831223102---058066999997057 Q ss_pred HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC Q ss_conf 2332013830002756389---70358999999999970891670140488764206889999999996699399750 Q gi|254780676|r 190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329) .+...=....+.....+|- ....+.-++.++++|+.|..+. -++|-...=+.+++.+.++.+.+.|+|+|.|- T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~d~i~l~ 200 (311) T 3ivs_A 125 DGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVR--FSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200 (311) T ss_dssp SEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEE--EEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE T ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCC--CCCCHHCCCCCCHHHHHHHHHCCCCCCCEECC T ss_conf 74238862315553320111110023300112100112321323--33320013432101332334301342212102 No 11 >>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=95.69 E-value=0.11 Score=32.92 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=94.6 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 99999998533586899815462344689998741070233201383000275638970358999999999970891670 Q gi|254780676|r 152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT 231 (329) Q Consensus 152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T 231 (329) .+.++.+++..-. +-+.+.-+ ..+.....+.++++.+.=-+.....-...-+...+|++.++.++.+++.+..+.. T Consensus 22 ~~i~~~~~~~g~~--~~l~Tng~--~~~~~~~~~~~~~~~i~isld~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i 97 (182) T 3can_A 22 IDILKRCGQQGIH--RAVDTTLL--ARKETVDEVXRNCELLLIDLKSXDSTVHQTFCDVPNELILKNIRRVAEADFPYYI 97 (182) T ss_dssp HHHHHHHHHTTCC--EEEECTTC--CCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHCCCC--EEEEECCC--HHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 9999999877992--99972521--1077777665200000243220038888878730257888666667663023124 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH-HCCCCCC----------C--CCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 1404887642068899999999966993997502-2278610----------0--7800023846999999999974962 Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ-YLQPTRK----------H--HKVESFVTPQDFKSYETIAYSKGFL 298 (329) Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ-YL~Ps~~----------h--~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329) .+=++-|+..+.+|+.+.++-+.+.|+++..+-+ .+.++.. . ..-......++...+.+++.+.||. T Consensus 98 ~~~~~~~~~d~~~ei~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (182) T 3can_A 98 RIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKXQTPSEEVQQQCIQILTDYGLK 177 (182) T ss_dssp EEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CCBCCCHHHHHHHHHHHHHTTCC T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 43022797599999999999998669984798665565676106877086245445777999999999999999970981 Q ss_pred EEECC Q ss_conf 43404 Q gi|254780676|r 299 MVSAS 303 (329) Q Consensus 299 ~V~Sg 303 (329) ...-| T Consensus 178 ~~i~g 182 (182) T 3can_A 178 ATIGG 182 (182) T ss_dssp EEECC T ss_pred EEECC T ss_conf 68596 No 12 >>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112) Probab=95.42 E-value=0.28 Score=30.20 Aligned_cols=99 Identities=15% Similarity=0.303 Sum_probs=64.4 Q ss_pred CCEEEEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH----HHHHHHHHH Q ss_conf 72699986652235352234467--899888823579999999970775189850544534532589----999999999 Q gi|254780676|r 85 NHATFMILGAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQ----HFAEVISAI 158 (329) Q Consensus 85 gtATFMilG~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~----hfa~~I~~I 158 (329) +....+-..--|..+|.||++.. |+....+++.-..=.+...+.|.+++.++..+ ....+.-. .|++.++++ T Consensus 3 ~~~~~i~tsRGCp~~C~FC~~~~~~g~~r~r~~~~v~~ei~~l~~~g~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 80 (112) T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQD--TTSYGIDLYRKQALPDLLRRL 80 (112) T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTT--GGGTTHHHHSSCCHHHHHHHH T ss_pred CCEEEEEECCCCCCCCEECEEEEEECCEEEECHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCCCCCCCCHHHHHHHH T ss_conf 850998986798997755734212297287099999999999998799689998503--664554233443278887655 Q ss_pred HHHCCCCEEEE--ECCCCCCCHHHHHHHHH Q ss_conf 85335868998--15462344689998741 Q gi|254780676|r 159 RESAPSTTIEV--LTPDFLRKPHALEKVVS 186 (329) Q Consensus 159 r~~~P~~~IEv--LiPDf~G~~~al~~v~~ 186 (329) .+.++...+-. +-||.. +.+.|+.+.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~ell~~l~~ 109 (112) T 2qgq_A 81 NSLNGEFWIRVXYLHPDHL-TEEIISAXLE 109 (112) T ss_dssp HTSSSSCEEEECCCCGGGC-CHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCCC-CCCCCCCCCC T ss_conf 3034411012123466333-2110000023 No 13 >>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} (X:) Probab=95.31 E-value=0.3 Score=29.95 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=108.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHH Q ss_conf 7899888823579999999970775189850544534532589999999999853358689981546234-468999874 Q gi|254780676|r 107 TGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR-KPHALEKVV 185 (329) Q Consensus 107 ~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G-~~~al~~v~ 185 (329) .........++-..++++..++|..++=+.+.... .--.+-++.+....|++.+..+.---.+ +...++.+. T Consensus 18 Q~~~~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (293) T 3ewb_X 18 QTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISS-------PGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALK 90 (293) T ss_dssp -----CCCHHHHHHHHHHHHHHTCSEEEEECGGGC-------HHHHHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 88999989999999999999839699999668788-------67788999998651213101200035364799999987 Q ss_pred HCCCHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE Q ss_conf 10702332013830002756389---703589999999999708916701404887642068899999999966993997 Q gi|254780676|r 186 SAKPDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 186 ~A~pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329) .++.+.+.+-+-+.+.....++- ....+...+.++.+++.+..+. =++|-...=+.+++.+.++.+.+.|+|+|. T Consensus 91 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 168 (293) T 3ewb_X 91 DAVSPQIHIFLATSDVHXEYKLKXSRAEVLASIKHHISYARQKFDVVQ--FSPEDATRSDRAFLIEAVQTAIDAGATVIN 168 (293) T ss_dssp TCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETGGGSCHHHHHHHHHHHHHTTCCEEE T ss_pred HCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE--EECCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 559977999973079988887516599999999999988750776799--811336676345689999999986997998 Q ss_pred CC Q ss_conf 50 Q gi|254780676|r 263 MG 264 (329) Q Consensus 263 iG 264 (329) |. T Consensus 169 l~ 170 (293) T 3ewb_X 169 IP 170 (293) T ss_dssp EE T ss_pred EC T ss_conf 33 No 14 >>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A (A:) Probab=95.21 E-value=0.32 Score=29.74 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=106.6 Q ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC Q ss_conf 998-8882357999999997077518985054453453258999999999985335868998154623446899987410 Q gi|254780676|r 109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA 187 (329) Q Consensus 109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A 187 (329) +|. |+-|+|-..-|.+..+-|-.-+=+--=+.|..+-.-+..|+++|.+||+.+|++.|.+-+..-.+..+....+.+. T Consensus 26 ~P~lP~TpeEia~~a~~c~~AGAaivHlH~R~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~ttgg~~~~~e~~~~~~~~ 105 (284) T 3chv_A 26 NPAVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGXIVQFSTGGRSGAGQARGGXLPL 105 (284) T ss_dssp CTTCCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTGGG T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC T ss_conf 99998998999999999998188689987328994977788999999999998668207974588777738887420334 Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-------CE Q ss_conf 70233201383000275638970358999999999970891670140488764206889999999996699-------39 Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV-------DF 260 (329) Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv-------di 260 (329) +||...=|+-+.-- +...|..+-+.+++.-+ ...+.|+..-++=-+-.-+..+..|.+-|. .+ T Consensus 106 ~Pd~asl~~gs~n~------~~~~~~n~~~~~~~~~~----~~~e~gi~pe~ei~d~g~l~~~~~l~~~Gll~~p~~~~~ 175 (284) T 3chv_A 106 KPDXASLSVGSNNF------PSRVYENPPDLVDWLAA----QXRSYRVTPEIEAFDLSHILRAIDXHGRGLLYGKLYVQF 175 (284) T ss_dssp CCSEEEECCSCEEC------SSSEECCCHHHHHHHHH----HHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEE T ss_pred CCCCCCCCCCCCCC------CCHHHHCCHHHHHHHHH----HHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 34555432223454------32334167999999999----999856665058874999999999998288678852799 Q ss_pred EECCHHCCC Q ss_conf 975022278 Q gi|254780676|r 261 LTMGQYLQP 269 (329) Q Consensus 261 lTiGQYL~P 269 (329) +-.+++-.| T Consensus 176 vlg~~~g~p 184 (284) T 3chv_A 176 VXGVKNAXP 184 (284) T ss_dssp EECCTTSCC T ss_pred EECCCCCCC T ss_conf 954566788 No 15 >>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:1-273) Probab=95.10 E-value=0.13 Score=32.57 Aligned_cols=157 Identities=11% Similarity=0.025 Sum_probs=112.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH Q ss_conf 9888823579999999970775189850544534----532589999999999853358689981546234468999874 Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDL----DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV 185 (329) Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL----~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~ 185 (329) ....+.++-..++++..++|..++-+++....+. .+.-+......+...........++.+.+ T Consensus 24 ~~~~~~~~~~~i~~~L~~~Gv~~iE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 90 (273) T 1nvm_A 24 RHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLL------------- 90 (273) T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEEC------------- T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC------------- T ss_conf 9998999999999999982949899688867655200012357876999999998615672454424------------- Q ss_pred HCCCHHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE Q ss_conf 1070233201383000275638---9703589999999999708916701404887642068899999999966993997 Q gi|254780676|r 186 SAKPDVFNHNLETVASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 186 ~A~pdV~nHNiETV~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329) ++.+++.-.+...+.....+| .....+..++.++++|+.|..+. -++|-..+-+.+++.+.++.+.+.|+|++. T Consensus 91 -~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~i~~ak~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 167 (273) T 1nvm_A 91 -PGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTV--GFLMMSHMIPAEKLAEQGKLMESYGATCIY 167 (273) T ss_dssp -BTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEE--EEEESTTSSCHHHHHHHHHHHHHHTCSEEE T ss_pred -CCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf -56205889999997299879996114376768899999997274302--344024566523445788888860863110 Q ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 502227861007800023846999999999 Q gi|254780676|r 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 (329) Q Consensus 263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329) |.-= .-..+|+++.++=..- T Consensus 168 l~Dt----------~G~~~P~~~~~li~~l 187 (273) T 1nvm_A 168 MADS----------GGAMSMNDIRDRMRAF 187 (273) T ss_dssp EECT----------TCCCCHHHHHHHHHHH T ss_pred CCCC----------CCCCCHHHHHHHHHHH T ss_conf 2542----------0246879999999999 No 16 >>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} (A:) Probab=94.67 E-value=0.4 Score=29.11 Aligned_cols=147 Identities=7% Similarity=-0.029 Sum_probs=103.2 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 98888235799999999707751898505445345325899999999998533586899815462344689998741070 Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329) Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329) ......++-.++++...++|..++=+.+...-+..-. +.+.+.......+...+..+.. .-+...++.+.+++. T Consensus 20 ~~~~~~~~k~~i~~~L~~~Gv~~iE~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (295) T 1ydn_A 20 KRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ----LADSREVXAGIRRADGVRYSVL--VPNXKGYEAAAAAHA 93 (295) T ss_dssp SSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG----GTTHHHHHHHSCCCSSSEEEEE--CSSHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH----HHHHHHHHHHCCCCCCCHHHHH--HHCCCCHHHHCCCCC T ss_conf 9998999999999999982989899807757754688----8878887742156675228876--531320111013564 Q ss_pred HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEE------EECHHHHHHHHHHHHHCCCCE Q ss_conf 2332013830002756389---7035899999999997089167014048876------420688999999999669939 Q gi|254780676|r 190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGL------GETRNEILQLMDDLRTADVDF 260 (329) Q Consensus 190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL------GEt~eEi~e~l~DLr~~gvdi 260 (329) +.+.--+-+.+..-..+|. ...-++-++.++++|+.|..+. -.++-.- +-+.+.+.+..+.+.+.|+|+ T Consensus 94 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 171 (295) T 1ydn_A 94 DEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR--GYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHE 171 (295) T ss_dssp SEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECSSEETTTEECCHHHHHHHHHHHHHHTCSE T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 08875201468999888510576656665477888764023443--1133102564200133446799988777448538 Q ss_pred EECC Q ss_conf 9750 Q gi|254780676|r 261 LTMG 264 (329) Q Consensus 261 lTiG 264 (329) +.|- T Consensus 172 i~l~ 175 (295) T 1ydn_A 172 VSLG 175 (295) T ss_dssp EEEE T ss_pred EECC T ss_conf 9616 No 17 >>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1} (A:) Probab=94.22 E-value=0.36 Score=29.45 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=103.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 98888235799999999707751898505445345325899999999998533586899815462344689998741070 Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329) Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329) ...++.++-..++++..++|..++-+++...-+-.-.- ..+..........+....-.+.+ ...+++....++. T Consensus 24 ~~~~~~~~k~~i~~~l~~~Gv~~iE~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 97 (302) T 2ftp_A 24 KQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQM--AGSAEVFAGIRQRPGVTYAALAP----NLKGFEAALESGV 97 (302) T ss_dssp SSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGG--TTHHHHHHHSCCCTTSEEEEECC----SHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH--HHHHHHHHCCCCCHHHHHHHHHH----CCHHHHHHHHCCC T ss_conf 99889999999999999729999998887586623777--65999996267420567778864----0069999984599 Q ss_pred HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-----EEC-HHHHHHHHHHHHHCCCCE Q ss_conf 2332013830002756389---7035899999999997089167014048876-----420-688999999999669939 Q gi|254780676|r 190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGL-----GET-RNEILQLMDDLRTADVDF 260 (329) Q Consensus 190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-----GEt-~eEi~e~l~DLr~~gvdi 260 (329) ++.+.-+.+.+.....+|- ....+.-.+.++++|+.|..+. ..++... +.+ .+.+.+.++.+.+.|+|. T Consensus 98 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~d~ 175 (302) T 2ftp_A 98 KEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR--GYISCVLGCPYDGDVDPRQVAWVARELQQMGCYE 175 (302) T ss_dssp CEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSE T ss_pred CEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE T ss_conf 88999863249999987533699998767899999986201000--1013135566555210999999999998605704 Q ss_pred EECC Q ss_conf 9750 Q gi|254780676|r 261 LTMG 264 (329) Q Consensus 261 lTiG 264 (329) |+|. T Consensus 176 i~l~ 179 (302) T 2ftp_A 176 VSLG 179 (302) T ss_dssp EEEE T ss_pred EECC T ss_conf 3147 No 18 >>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} (A:) Probab=93.50 E-value=0.24 Score=30.68 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=102.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHH Q ss_conf 234467899888823579999999970775189850544534532589999999-9998533586899815462344689 Q gi|254780676|r 102 FCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVI-SAIRESAPSTTIEVLTPDFLRKPHA 180 (329) Q Consensus 102 FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I-~~Ir~~~P~~~IEvLiPDf~G~~~a 180 (329) +-+-........+.++-..++++..++|..++-+.+..+-+..-......+... +......+.+.. +-.... T Consensus 14 lRDG~Q~~~~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 86 (307) T 1ydo_A 14 PRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAAL-------VPNQRG 86 (307) T ss_dssp HHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEE-------CCSHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEHH-------HCCCHH T ss_conf 8863659899989999999999999819898994787584527777889999974774545321001-------102327 Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCEEEECCCEEEE------EEECHHHHHHHHH Q ss_conf 99874107023320138300027563897---03589999999999708916701404887------6420688999999 Q gi|254780676|r 181 LEKVVSAKPDVFNHNLETVASNYLMVRPG---ARYFHSLRLLQRVKELDPLIFTKSGIMLG------LGETRNEILQLMD 251 (329) Q Consensus 181 l~~v~~A~pdV~nHNiETV~rLy~~VRp~---a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG------LGEt~eEi~e~l~ 251 (329) +.....++.+.+.=-+.+.+.....++.. ...++-+..++.+++.|..+. ..+|.- ---+.+.+.+.++ T Consensus 87 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~G~~v~--~~l~~~~~~~d~~~~~~~~l~~~~~ 164 (307) T 1ydo_A 87 LENALEGGINEACVFXSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTR--AYLSTVFGCPYEKDVPIEQVIRLSE 164 (307) T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCBTTTBCCCHHHHHHHHH T ss_pred HHHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE--EEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 99863044435888730126554543105489877667777765403210001--2332204665232210678899999 Q ss_pred HHHHCCCCEEECC Q ss_conf 9996699399750 Q gi|254780676|r 252 DLRTADVDFLTMG 264 (329) Q Consensus 252 DLr~~gvdilTiG 264 (329) .+.+.|+|.+.|- T Consensus 165 ~~~~~g~~~i~l~ 177 (307) T 1ydo_A 165 ALFEFGISELSLG 177 (307) T ss_dssp HHHHHTCSCEEEE T ss_pred HHHHCCCEEEECC T ss_conf 9986398078514 No 19 >>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=92.96 E-value=0.89 Score=26.64 Aligned_cols=159 Identities=10% Similarity=0.002 Sum_probs=116.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCC Q ss_conf 8888235799999999707751898505445345325899999999998533586899815462344-689998741070 Q gi|254780676|r 111 QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-PHALEKVVSAKP 189 (329) Q Consensus 111 ~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-~~al~~v~~A~p 189 (329) .....++-.++|+...++|..++=+.+..- + .--.+-++.+....++..+..+.-.-.+. ...++.+..++. T Consensus 23 ~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 95 (325) T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGFPVS------S-PGDFNSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKR 95 (325) T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEECTTS------C-HHHHHHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSS T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCC------C-HHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHCCC T ss_conf 999999999999999976969999977979------9-799999999874124430310211220025656999985588 Q ss_pred HHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH Q ss_conf 233201383000275638---97035899999999997089167014048876420688999999999669939975022 Q gi|254780676|r 190 DVFNHNLETVASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329) Q Consensus 190 dV~nHNiETV~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329) +.++..+.+.+.+-..++ ....-+..+++++++|+.|..+. -++|-.--=+.+++.+.++.+.+.|+|+|.|--- T Consensus 96 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt 173 (325) T 3eeg_A 96 SRIHTGIGSSDIHIEHKLRSTRENILEXAVAAVKQAKKVVHEVE--FFCEDAGRADQAFLARXVEAVIEAGADVVNIPDT 173 (325) T ss_dssp EEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE--EEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBS T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE--ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 57998514549999988766688899999999998876053244--2356544306999999999999849989995155 Q ss_pred CCCCCCCCCCCCCCCHHHHHHH Q ss_conf 2786100780002384699999 Q gi|254780676|r 267 LQPTRKHHKVESFVTPQDFKSY 288 (329) Q Consensus 267 L~Ps~~h~pV~ryv~P~eF~~~ 288 (329) .-+-+|+++.++ T Consensus 174 ----------~G~~~P~~~~~l 185 (325) T 3eeg_A 174 ----------TGYXLPWQYGER 185 (325) T ss_dssp ----------SSCCCHHHHHHH T ss_pred ----------CCCEECHHHHHH T ss_conf ----------665531167889 No 20 >>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* (A:) Probab=92.48 E-value=1 Score=26.21 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=88.3 Q ss_pred CCCCCHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC Q ss_conf 98888235799999-99970775189850544534532589999999999853358689981546234468999874107 Q gi|254780676|r 110 PQPLDPQEPENISW-AVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK 188 (329) Q Consensus 110 P~~~D~~EP~rvA~-av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~ 188 (329) ....+.++-.+++. ++..+|..++-+.+.... ..-..-+......++............ ...+...++.+..++ T Consensus 35 ~~~~~~~~ki~~~~~~l~~~Gv~~iE~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 109 (337) T 3ble_A 35 GVSFSTSEKLNIAKFLLQKLNVDRVEIASARVS---KGELETVQKIMEWAATEQLTERIEILG--FVDGNKTVDWIKDSG 109 (337) T ss_dssp TCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSC---TTHHHHHHHHHHHHHHTTCGGGEEEEE--ESSTTHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC---HHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHHHHHHCC T ss_conf 999899999999999999769898996897668---778888899999853111011033555--654338899998659 Q ss_pred CHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC Q ss_conf 02332013830002756389---7035899999999997089167-0140488764206889999999996699399750 Q gi|254780676|r 189 PDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 189 pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329) .++++--+.+.+.....+|- ....+..++.++.+|+.|..+. +-++++=.-..+.+.+.+..+-+.++|+|.+.|- T Consensus 110 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 189 (337) T 3ble_A 110 AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLP 189 (337) T ss_dssp CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEE T ss_pred CCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 98452034532233112101208889888889999997549759986313444433453024566677876312332036 No 21 >>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid biosynthesis, cytoplasm, lysine biosynthesis; HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A* (A:1-277) Probab=92.37 E-value=1.1 Score=26.12 Aligned_cols=154 Identities=8% Similarity=-0.007 Sum_probs=104.5 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH Q ss_conf 35223446789988882357999999997077518985054453453258999999999985335868998154623446 Q gi|254780676|r 99 ACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP 178 (329) Q Consensus 99 ~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~ 178 (329) .|.+-+-..........++-.++++...++|+.++=+++.... ......++...+......+- .-++.+. T Consensus 8 D~TlRDG~Q~~~~~~~~~~~~~i~~~l~~~Gv~~iE~g~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 77 (277) T 2ztj_A 8 DSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVAS-------PQSRKDAEVLASLGLKAKVV---THIQCRL 77 (277) T ss_dssp EEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTSC-------HHHHHHHHHHHTSCCSSEEE---EEEESCH T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHCCCCCCCE---EEHEECC T ss_conf 7997875789998989999999999999829898999787478-------77899999998628863220---1000265 Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHH Q ss_conf 899987410702332013830002756389--70358999999999970891670140488764-206889999999996 Q gi|254780676|r 179 HALEKVVSAKPDVFNHNLETVASNYLMVRP--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRT 255 (329) Q Consensus 179 ~al~~v~~A~pdV~nHNiETV~rLy~~VRp--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~ 255 (329) ..++.+..++.+.+..-+-+....-...+- ....+...+.++++|+.|..+. -.++-.-+ .+++.+.+.+..+.+ T Consensus 78 ~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~v~~a~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~ 155 (277) T 2ztj_A 78 DAAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVE--VRFSAEDTFRSEEQDLLAVYEAVA 155 (277) T ss_dssp HHHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSE--EEEEETTTTTSCHHHHHHHHHHHG T ss_pred CHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCCCCCCCHHHHHHCC T ss_conf 145667752750589971364898887664699999999999999997277505--775012244454211013321012 Q ss_pred CCCCEEECC Q ss_conf 699399750 Q gi|254780676|r 256 ADVDFLTMG 264 (329) Q Consensus 256 ~gvdilTiG 264 (329) .|+|++.|. T Consensus 156 ~g~~~i~l~ 164 (277) T 2ztj_A 156 PYVDRVGLA 164 (277) T ss_dssp GGCSEEEEE T ss_pred CCCEEEEEC T ss_conf 431146751 No 22 >>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472) Probab=91.48 E-value=0.45 Score=28.71 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=54.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH Q ss_conf 3579999999970775189850544534--53258999999999985335868998154623446899987410702332 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDL--DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN 193 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL--~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n 193 (329) ++-..++++..++|..++-+.+...-|. ..-+.. -.+-++.++...|++.+..|.-+ ..+.......-++.. T Consensus 47 e~~~~i~~~Ld~~G~~~iEvg~~a~~~~~~~~~~~~-~~e~l~~~~~~~~~t~~~~l~r~-----~~~~~~~~~~~~vv~ 120 (359) T 1rqb_A 47 EDXVGACADIDAAGYWSVECWGGATYDSCIRFLNED-PWERLRTFRKLXPNSRLQXLLRG-----QNLLGYRHYNDEVVD 120 (359) T ss_dssp GGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCC-HHHHHHHHHHHCTTSCEEEEECG-----GGTTSSSCCCHHHHH T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCC-HHHHHHHHHHHCCCCCCHHHHCH-----HHCCCCCCCCHHHHH T ss_conf 999999999998299989888884768899862788-79999999985899824363221-----220100258778999 Q ss_pred HCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC Q ss_conf 013830----00275638970358999999999970891670140488764206889999999996699399750 Q gi|254780676|r 194 HNLETV----ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 194 HNiETV----~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329) .-+++. -+.++........+.....++.+|+.|..+..-=+.+-+-.-+.+.+++.++.+.+.|+|+|.|. T Consensus 121 ~f~~~s~~~~~~~~ri~~~~n~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G~d~I~i~ 195 (359) T 1rqb_A 121 RFVDKSAENGXDVFRVFDAXNDPRNXAHAXAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDXGADSIALX 195 (359) T ss_dssp HHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999985138873476788999988889999956987999996167878799999999767773697679871 No 23 >>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} (A:1-267) Probab=88.59 E-value=0.64 Score=27.65 Aligned_cols=141 Identities=6% Similarity=-0.057 Sum_probs=91.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHH--HHHCC---CCEEEEECCCCCCCHHHHHHH Q ss_conf 9888823579999999970775189850544534532589999999999--85335---868998154623446899987 Q gi|254780676|r 110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAI--RESAP---STTIEVLTPDFLRKPHALEKV 184 (329) Q Consensus 110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~I--r~~~P---~~~IEvLiPDf~G~~~al~~v 184 (329) ......++-.+++++..++|..++-+++....+-..............- ..... ...++.+.| .....+... T Consensus 18 ~~~~~~e~k~~i~~~l~~~Gv~~iE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 94 (267) T 3dxi_A 18 NWDFNSKIVDAYILAXNELPIDYLEVGYRNKPSKEYXGKFGYTPVSVLKHLRNISTKKIAIXLNEKNT---TPEDLNHLL 94 (267) T ss_dssp TTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGC---CGGGHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH T ss_conf 99999999999999999819598998088897566777760782899999886545456665413445---589999887 Q ss_pred HHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC Q ss_conf 41070233201383000275638970358999999999970891670140488764206889999999996699399750 Q gi|254780676|r 185 VSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 185 ~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329) ....+-+.-+ +.-......++-++.++++++.|..+. -+++-.-.=+.+++.+.++.+.+.|+|++.|. T Consensus 95 ~~~s~~~~~~---------r~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~d~I~l~ 163 (267) T 3dxi_A 95 LPIIGLVDXI---------RIAIDPQNIDRAIVLAKAIKTXGFEVG--FNVXYXSKWAEXNGFLSKLKAIDKIADLFCXV 163 (267) T ss_dssp GGGTTTCSEE---------EEEECGGGHHHHHHHHHHHHTTTCEEE--EEECCTTTGGGSTTSGGGGGGGTTTCSEEEEE T ss_pred HCCCCCEEEE---------EECCCHHHHHHHHHHHHHHHHCCCEEE--EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEC T ss_conf 6158864356---------530518899999999999997398587--75410233211677889999998189999944 No 24 >>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:1-370) Probab=87.36 E-value=1.4 Score=25.32 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=107.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH Q ss_conf 35223446789988882357999999997077518985054453453258999999999985335868998154623446 Q gi|254780676|r 99 ACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP 178 (329) Q Consensus 99 ~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~ 178 (329) .|.|-+-..........++-.++|++..++|..++=+.+-..- .....+.+.+.+.+...|++.+-.|+.-..... T Consensus 76 DtTlRDG~Q~~~~~~~~~~k~~i~~~L~~~G~~~iEvg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (370) T 1sr9_A 76 AVDLRDGNQALIDPXSPARKRRXFDLLVRXGYKEIEVGFPSAS----QTDFDFVREIIEQGAIPDDVTIQVLTQCRPELI 151 (370) T ss_dssp ECTTTHHHHTCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTC----HHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----HHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH T ss_conf 6999874779899989999999999999869999996177679----589999999997077877847999970575768 Q ss_pred -HHHHHHHHCCCHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEE----ECCCEEEEEEE-------CH Q ss_conf -899987410702332013830002756389---7035899999999997089167----01404887642-------06 Q gi|254780676|r 179 -HALEKVVSAKPDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIF----TKSGIMLGLGE-------TR 243 (329) Q Consensus 179 -~al~~v~~A~pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~----TKSGlMvGLGE-------t~ 243 (329) ..++.+..++.+++..=+.+.+..-..+.. .-+..+-+++...+++.+..+. ..++-+.--.. +. T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 231 (370) T 1sr9_A 152 ERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQV 231 (370) T ss_dssp HHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHH T ss_pred HHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH T ss_conf 99999966899867999978369988887249999999999999999999999737844789877401676778999999 Q ss_pred HHHHHHHHHHHHCCCCEEECC Q ss_conf 889999999996699399750 Q gi|254780676|r 244 NEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 244 eEi~e~l~DLr~~gvdilTiG 264 (329) +++++....+.+.|+|+|.|. T Consensus 232 ~~~~~~a~~~~~~g~~~i~i~ 252 (370) T 1sr9_A 232 CDAVGEVIAPTPERPIIFNLP 252 (370) T ss_dssp HHHHHHHHCCBTTBCEEEEEE T ss_pred HHHHHHHCCCCCCCCEEEECC T ss_conf 999999563322694699815 No 25 >>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464) Probab=84.32 E-value=3.6 Score=22.34 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=81.3 Q ss_pred CCHHHHHHHHHHHHHHCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHH-------HH Q ss_conf 88235799999999707751-898505445345325899999999998533586899815462344--689-------99 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSH-VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK--PHA-------LE 182 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~-vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~--~~a-------l~ 182 (329) -|...-+...+.++..|..- +.|...+. +..--..|++.++++.+..++. +-++|.-|- ... |+ T Consensus 124 ~~~~~~~~~i~~ak~~G~~~~~~i~~~~s---~~~~~~~~~~~~~~l~~~gad~---I~i~Dt~G~~~P~~~~~lv~~lk 197 (353) T 2nx9_A 124 NDVRNMQQALQAVKKMGAHAQGTLCYTTS---PVHNLQTWVDVAQQLAELGVDS---IALKDMAGILTPYAAEELVSTLK 197 (353) T ss_dssp CCTHHHHHHHHHHHHTTCEEEEEEECCCC---TTCCHHHHHHHHHHHHHTTCSE---EEEEETTSCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCHHHHHHHHHHHHCCCCCE---EEECCCCCCCCHHHHHHHHHHHH T ss_conf 78999999999999817710233321568---8878999999999874269857---88426766562799999999998 Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCEEEECCCEEEEEEE-----CHHHHHHHHHHH-HH Q ss_conf 8741070233201383000275638970358999-9999999708916701404887642-----068899999999-96 Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSL-RLLQRVKELDPLIFTKSGIMLGLGE-----TRNEILQLMDDL-RT 255 (329) Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL-~vL~~aK~~~~~i~TKSGlMvGLGE-----t~eEi~e~l~DL-r~ 255 (329) .-.+...++-.|| ++.-.+ +.|. |=++|-++. .+=+.|||| .-|.++..|..+ .+ T Consensus 198 ~~~~i~i~~H~Hn---------------t~Gla~an~l~-Ai~aGad~I--Dtsi~glG~~tGn~~tE~lv~~L~~~g~~ 259 (353) T 2nx9_A 198 KQVDVELHLHCHS---------------TAGLADMTLLK-AIEAGVDRV--DTAISSMSGTYGHPATESLVATLQGTGYD 259 (353) T ss_dssp HHCCSCEEEEECC---------------TTSCHHHHHHH-HHHTTCSEE--EEBCGGGCSTTSCCBHHHHHHHHTTSTTC T ss_pred HHCCCEEEEEECC---------------HHHHHHHHHHH-HHHCCCCEE--ECCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 6357617898477---------------17789999999-998399899--83787889983168799999998614989 Q ss_pred CCCC---EEECCHHCCCCCCC-CCC--------CCCCCHHHHHHHH----HHHHHCCCCE Q ss_conf 6993---99750222786100-780--------0023846999999----9999749624 Q gi|254780676|r 256 ADVD---FLTMGQYLQPTRKH-HKV--------ESFVTPQDFKSYE----TIAYSKGFLM 299 (329) Q Consensus 256 ~gvd---ilTiGQYL~Ps~~h-~pV--------~ryv~P~eF~~~~----~~a~~~Gf~~ 299 (329) .|+| +..|..|+++-... .+- .--..| ||+..+ .+|.+.|+.. T Consensus 260 t~idl~~L~~i~~~~~~i~~~~~~~~~~i~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 318 (353) T 2nx9_A 260 TGLDIAKLEQIAAYFRDVRKKYHAFEGMMKGSPADLIAA-EMPTLQDRVLQQAKEQHITL 318 (353) T ss_dssp CCCCHHHHHHHHHHHHHHHHHTGGGCCSCCSCGGGSSCC-CHHHHHHHHHHHHHHTTCCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC-CHHHHHHHHHHHHHHCCCCC T ss_conf 998989999999999999998526675556780342573-15899999999998515676 No 26 >>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:66-396,A:510-576) Probab=81.93 E-value=4.1 Score=21.98 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHHHCCCCEEEC Q ss_conf 0688999999999669939975 Q gi|254780676|r 242 TRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 242 t~eEi~e~l~DLr~~gvdilTi 263 (329) +.+.+.+..+.|.+.|+|+|.| T Consensus 194 ~~~~~~~~a~~l~~~Gad~I~i 215 (398) T 3bg3_A 194 SLQYYMGLAEELVRAGTHILCI 215 (398) T ss_dssp CHHHHHHHHHHHHHHTCSEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEE T ss_conf 8999999999998639978986 No 27 >>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} (A:248-421) Probab=81.18 E-value=1.5 Score=25.13 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=76.6 Q ss_pred CCCCHHHHHCCCCEEEEEECC-CCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHC-CCEEEEEC--CCCCCCCCCHH Q ss_conf 887876750897269998665-223535223446789988-88235799999999707-75189850--54453453258 Q gi|254780676|r 74 GCPNIGECWNKNHATFMILGA-ICTRACTFCNVATGKPQP-LDPQEPENISWAVRSMK-LSHVVITS--VDRDDLDDGGA 148 (329) Q Consensus 74 ~CPNi~ECw~~gtATFMilG~-~CTR~C~FC~V~~G~P~~-~D~~EP~rvA~av~~l~-Lk~vViTS--V~RDDL~DgGA 148 (329) .-+-.+.-|....-||+=||| ..| .|||.| +||.- |+..-.+... =.-.||-- |--=--..-=| T Consensus 32 ~~~~~g~~l~s~gH~iiDlGDD~fT---------~GrPHPMIDPs~--R~e~l~~~a~Dp~~~VILlD~VLGyGah~Dpa 100 (174) T 3dmy_A 32 DTHQHGXXLDADSHQIIDLGDDFYT---------VGRPHPXIDPTL--RNQLIADLGAKPQVRVLLLDVVIGFGATADPA 100 (174) T ss_dssp -CCGGGEEEEETTEEEEETTSHHHH---------TTSCCTTTCCHH--HHHHHHHGGGCTTEEEEEEEEECSTTSCSCHH T ss_pred CCHHHHHHHHCCCCHHHHCCCCHHC---------CCCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHH T ss_conf 7476898652334214322895001---------569756569899--99999999529898879997412675666727 Q ss_pred HHHHHHHHHHHHHCCC----CEEEE---ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC Q ss_conf 9999999999853358----68998---15462344689998741070233201383000275638 Q gi|254780676|r 149 QHFAEVISAIRESAPS----TTIEV---LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVR 207 (329) Q Consensus 149 ~hfa~~I~~Ir~~~P~----~~IEv---LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR 207 (329) .-.+..|+++++..++ ..|-. ---|-++..++.+++.+||.-|+.-|-+.|+--..-|+ T Consensus 101 g~l~paI~~a~~a~~~gr~l~vva~V~GT~~DPQ~~~~Q~~~L~~AGv~v~~Sn~qA~~~A~~li~ 166 (174) T 3dmy_A 101 ASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIH 166 (174) T ss_dssp HHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEECSSHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH T ss_conf 777999999999753479946999965777775248999999995898236998999999999860 No 28 >>3fdg_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, MCSG, PSI-2, protein structure initiative; 1.80A {Rhodobacter sphaeroides 2} (A:) Probab=80.92 E-value=4.8 Score=21.46 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=93.5 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCC--------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH Q ss_conf 999999970775189850544534532--------------589999999999853358689981546234468999874 Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDG--------------GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV 185 (329) Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~Dg--------------GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~ 185 (329) ..-+.+..+|++++.+|--.+-.+.|+ -..+..+.|+++-++ ++.|.+-=. ++....+.+- T Consensus 147 ~~l~~~~~~GvR~i~lt~~~~n~~~~~~~~~~~~~~~~~~GLt~~G~~~v~~mn~l--GiivD~sH~---s~~~~~d~l~ 221 (355) T 3fdg_A 147 DALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAGRRLVAECNRL--KIMLDLSHL---NEKGFDDVAR 221 (355) T ss_dssp HHHHHHHHHTEEEEESCSSSCCSSCCBCCCEESCCSCCSCCCCHHHHHHHHHHHHH--TCEECCTTB---CHHHHHHHHH T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCEEECCCC---CHHHHHHHHH T ss_conf 88999997095799743676777666787456775425899898899999999863--917753768---5889999987 Q ss_pred -HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE---------------EECHHHHHHH Q ss_conf -107023320138300027563897035899999999997089167014048876---------------4206889999 Q gi|254780676|r 186 -SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL---------------GETRNEILQL 249 (329) Q Consensus 186 -~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL---------------GEt~eEi~e~ 249 (329) ...|-+.+|.- ++.+.+.-|--. + +.|+.+.+ +|.++|+ ..|.+.+.+. T Consensus 222 ~s~~Pvi~SHs~--~~~~~~~~Rnl~--D---~~lr~ia~--------~GGvigi~~~~~~l~~~~~~~~~~~~~~~~~h 286 (355) T 3fdg_A 222 LSDAPLVATHSN--AHAVTPSTRNLT--D---RQLAMIRE--------SRGMVGLNFATSFLREDGRRSAEMGWEPVLRH 286 (355) T ss_dssp HCSSCCEESSCC--BTTTSCCTTSBC--H---HHHHHHHH--------TTCEEEECCCHHHHSTTCCCCCCCCSHHHHHH T ss_pred HCCCCEEEECCC--HHHCCCCCCCCC--H---HHHHHHHH--------CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 268998995578--464088877799--9---99999998--------59979984350303787767656899999999 Q ss_pred HHHHHH-CCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 999996-6993997502227861007800023846999999999974962 Q gi|254780676|r 250 MDDLRT-ADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329) Q Consensus 250 l~DLr~-~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329) +..+.+ +|+|.|-||-=.--.. -+.-.-.|..|..+.+.-.+.||. T Consensus 287 i~~i~~l~G~dhV~~GSDfdg~~---~~~gl~d~~~~~~l~~~L~~rG~s 333 (355) T 3fdg_A 287 LDHLIDRLGEDHVGMGSDFDGAT---IPQGIADVTGLPALQAAMRAHGYD 333 (355) T ss_dssp HHHHHHHHCTTSEEECCCBTTSC---CCTTTCSGGGHHHHHHHHHHHTCC T ss_pred HHHHHHHHCCCCEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99999972988189821689998---978777877899999999986999 No 29 >>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} (A:159-277) Probab=79.86 E-value=5.2 Score=21.23 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=41.9 Q ss_pred EECHHHHHHHHHHHHHCCCCEEEC---CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 420688999999999669939975---02227861007800023846999999999974962434048300 Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTM---GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTR 307 (329) Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTi---GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVR 307 (329) -.+.+|+.+.++++.+.|+|.+-| |-|+.++.. +-..+++|++|...-+.|.+.|++.+.-..-.+ T Consensus 14 v~~~~e~~~~v~~~~~~g~d~IKi~~~g~~~~~~~~--~~~~~~~~e~l~a~v~~Ah~~G~~v~~Ha~~~~ 82 (119) T 2qs8_A 14 VNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKS--GQNPQFTQEEVDAVVSAAKDYGXWVAVHAHGAE 82 (119) T ss_dssp ECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSC--SSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 167899998888765314320000002322223334--443010156779999999983996211246606 No 30 >>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} (A:) Probab=78.01 E-value=5.9 Score=20.85 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=63.5 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCC----------CCCC----------------CCCH---HHHHHHHHHHHHHHCC Q ss_conf 882357999999997077518985054----------4534----------------5325---8999999999985335 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVD----------RDDL----------------DDGG---AQHFAEVISAIRESAP 163 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~----------RDDL----------------~DgG---A~hfa~~I~~Ir~~~P 163 (329) ...++-.++-+.....+++...+---| -..| +++| .+.+.+.|+.-+++.= T Consensus 30 ~s~~~l~~~i~~ma~~K~N~l~lhl~D~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~yT~~ei~~l~~ya~~~gI 109 (367) T 1yht_A 30 YSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGI 109 (367) T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 68999999999999829978999877478853022787625553025778776787678886489999999999998699 Q ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHCCCEEEECC-CEEE Q ss_conf 8689981546234468999874107023320138300027---56--3897035899999999997089167014-0488 Q gi|254780676|r 164 STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNY---LM--VRPGARYFHSLRLLQRVKELDPLIFTKS-GIML 237 (329) Q Consensus 164 ~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy---~~--VRp~a~Y~rSL~vL~~aK~~~~~i~TKS-GlMv 237 (329) ++.-|+=+| |...+ ++.+.|+....+.+...... .. +.....|+---++++.+.+.-+. +| -+=+ T Consensus 110 ~vIPeid~P---gH~~~---~~~~~p~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~l~~e~~~~f~~---~~~~~hi 180 (367) T 1yht_A 110 ELIPELDSP---NHMTA---IFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGD---TSQHFHI 180 (367) T ss_dssp EEEEEEEES---SSCHH---HHHHHHHHHCHHHHHHHBCSSCTTSBCTTCHHHHHHHHHHHHHHHHHHGG---GCSEEEE T ss_pred EEEECCCCC---HHHHH---HHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---CCCEEEE T ss_conf 897556621---58999---99846154078766467788878752588823788999999999986378---5434775 Q ss_pred EEEECH------HH----HHHHHHHHHHCCCCEEECCHHCC Q ss_conf 764206------88----99999999966993997502227 Q gi|254780676|r 238 GLGETR------NE----ILQLMDDLRTADVDFLTMGQYLQ 268 (329) Q Consensus 238 GLGEt~------eE----i~e~l~DLr~~gvdilTiGQYL~ 268 (329) |.=|.. +. +.++.+-+++.|...+--+.-+- T Consensus 181 G~DE~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~W~d~~~ 221 (367) T 1yht_A 181 GGDEFGYSVESNHEFITYANKLSYFLEKKGLKTRMWNDGLI 221 (367) T ss_dssp ECCSCCTTSCCHHHHHHHHHHHHHHHHHTTCEEEEESTTCB T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHC T ss_conf 03200244343178899999999999977998999713414 No 31 >>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} (A:) Probab=77.96 E-value=5.9 Score=20.84 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=91.1 Q ss_pred CC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECC--------------- Q ss_conf 98-8882357999999997077518985054453-453258999999999985335868998154--------------- Q gi|254780676|r 110 PQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD-LDDGGAQHFAEVISAIRESAPSTTIEVLTP--------------- 172 (329) Q Consensus 110 P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD-L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiP--------------- 172 (329) |. |+.++|-..-|.+..+-|-.-+=|--=|-|| -+..-+..|+++|.+||+.+|++.|-+-+. T Consensus 41 P~lP~TpeEIa~~A~~c~~AGAaivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~pd~ii~~TTg~~g~~~~~~~~~~~~ 120 (316) T 3c6c_A 41 PSXPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKA 120 (316) T ss_dssp TTCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHC T ss_conf 99989989999999999981873899875588889967899999999999998738807984687565667770111102 Q ss_pred ----CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHH Q ss_conf ----6234468999874107023320138300027563--8970358999999999970891670140488764206889 Q gi|254780676|r 173 ----DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMV--RPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEI 246 (329) Q Consensus 173 ----Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~V--Rp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi 246 (329) +.....+.+..+-...||+-.=|+-+.--....- --..++..--.+++..++.| +..-+.--+..- T Consensus 121 ~~~~~~~~~~~r~~~~~~~~Pd~asl~~g~~n~~~~~~~~v~~n~~~~~~~~~~~~~e~g--------i~pe~evfd~g~ 192 (316) T 3c6c_A 121 LPESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVYLNTTRTLRAXARRFQELG--------IKPELEVFSPGD 192 (316) T ss_dssp CTTCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEECCCHHHHHHHHHHHHHHT--------CEEEEEESSHHH T ss_pred CCCCCCCCHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCC--------CEEEEEEECHHH T ss_conf 477677889998615120586600246665542235544034288788789999999739--------846999966499 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999996699 Q gi|254780676|r 247 LQLMDDLRTADV 258 (329) Q Consensus 247 ~e~l~DLr~~gv 258 (329) +..+..|.+.|+ T Consensus 193 l~~~~~l~~~Gl 204 (316) T 3c6c_A 193 ILFGKQLIEEGL 204 (316) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHCCC T ss_conf 999999986588 No 32 >>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* (B:) Probab=77.48 E-value=2.8 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=16.4 Q ss_pred EECHHHHHHHHHHHHHCCCCEEEC--CHHCCCCCCC Q ss_conf 420688999999999669939975--0222786100 Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTM--GQYLQPTRKH 273 (329) Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTi--GQYL~Ps~~h 273 (329) |.+.+|-++.++.|.+.|+|++.+ |.|-.+...+ T Consensus 262 G~~~ee~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~ 297 (402) T 2hsa_B 262 GLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTE 297 (402) T ss_dssp HHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSS T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC T ss_conf 888999987888740366541885256555556655 No 33 >>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} (D:) Probab=76.61 E-value=0.56 Score=28.07 Aligned_cols=186 Identities=8% Similarity=0.037 Sum_probs=105.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329) +-+..-|...++.++..|...++++.... ...+-..+...++++... ..+.+...+.-...+..+.+.+++.|. T Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~g~d~ 99 (253) T 1thf_D 26 LRDSGDPVELGKFYSEIGIDELVFLDITA---SVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADK 99 (253) T ss_dssp SSCTTCHHHHHHHHHHTTCCEEEEEESSC---SSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSE T ss_pred EEECCCHHHHHHHHHHCCCCEEEEEEECC---CCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHCCCCE T ss_conf 37898999999999986998899986314---324532079999999851---574225751311313467888638989 Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCC Q ss_conf 3201383000275638970358999999999970-891670140488764206889999999996699399750222786 Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPT 270 (329) Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps 270 (329) ++=|+.+...---..--.+.......++...+.. ...+. --+..|..+..+........+.+.+++.++.+.-.+.. T Consensus 100 i~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (253) T 1thf_D 100 VSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFM--VFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG 177 (253) T ss_dssp EEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE--EEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT T ss_pred EEECHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCCCEE--EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 9987688629598999999819810798777530378146--65430135432238899999975559879999753357 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH Q ss_conf 10078000238469999999999749624340483001031899 Q gi|254780676|r 271 RKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD 314 (329) Q Consensus 271 ~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e 314 (329) +..+...+.++.++.......+++|= |||.-.+.+ T Consensus 178 --------~~~~~~~~~i~~ia~~~~~pvi~~GG-I~s~~di~~ 212 (253) T 1thf_D 178 --------TKSGYDTEMIRFVRPLTTLPIIASGG-AGKMEHFLE 212 (253) T ss_dssp --------SCSCCCHHHHHHHGGGCCSCEEEESC-CCSHHHHHH T ss_pred --------CCCCCCCCCCCCCCCCCCCCEEEECC-CCCHHHHHH T ss_conf --------66775411110102454671898448-899999999 No 34 >>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} (A:165-339) Probab=75.95 E-value=6.6 Score=20.47 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=48.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEC--CCCCC-------CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH Q ss_conf 23579999999970775189850--54453-------4532589999999999853358689981546234468999874 Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITS--VDRDD-------LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV 185 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTS--V~RDD-------L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~ 185 (329) ++|-.+.-....+.|..++-|.+ ..+.. .+-.....+...|++.++..-.+.+-+-. ..+++..+ T Consensus 20 ~~e~~~~v~~~~~~g~d~IKi~~dG~~~~~~~~~~~g~~~~s~e~l~~~v~~A~~~G~~v~~Ha~g------~~a~~~al 93 (175) T 2p9b_A 20 PEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQXSVEQXRAICDEAHQYGVIVGAHAQS------PEGVRRSL 93 (175) T ss_dssp HHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECS------HHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC------HHHHHHHH T ss_conf 256666666665432211001013554322233332111111899998887654124302210244------15569999 Q ss_pred HCCCHHHHHCCCCCCC Q ss_conf 1070233201383000 Q gi|254780676|r 186 SAKPDVFNHNLETVAS 201 (329) Q Consensus 186 ~A~pdV~nHNiETV~r 201 (329) +++.+.+-|+----+. T Consensus 94 ~ag~~~IeH~~~~~~~ 109 (175) T 2p9b_A 94 LAGVDTIEHGSVLDDE 109 (175) T ss_dssp HHTCSEEEECCCCCHH T ss_pred HHCCCEEECCCCCCHH T ss_conf 8265534113332203 No 35 >>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221) Probab=74.51 E-value=7.2 Score=20.22 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=56.5 Q ss_pred CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEE-ECHHHHHHHHHHH Q ss_conf 44689998741070233201383000275638970358999999999970-891670140488764-2068899999999 Q gi|254780676|r 176 RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLG-ETRNEILQLMDDL 253 (329) Q Consensus 176 G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLG-Et~eEi~e~l~DL 253 (329) +-...++.++++|.+-+-=+--|-|-.+ -+-+...++++.+.+. +.++ -+++|.| .+-+|.++..++. T Consensus 38 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~------Ls~~Er~~l~~~~~~~~~~~~----~ii~gv~~~~t~~~i~~a~~a 107 (221) T 3cpr_A 38 AGREVAAYLVDKGLDSLVLAGTTGESPT------TTAAEKLELLKAVREEVGDRA----KLIAGVGTNNTRTSVELAEAA 107 (221) T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTTTT------SCHHHHHHHHHHHHHHHTTTS----EEEEECCCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEECEECHHHHH------CCHHHHHHHHHHHHHHHCCCC----CEEECCCCCHHHHHHHHHHHH T ss_conf 9999999999779998997844200324------899999999999999836887----677426752199999999999 Q ss_pred HHCCCCEEECCH--HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 966993997502--22786100780002384699999999997496 Q gi|254780676|r 254 RTADVDFLTMGQ--YLQPTRKHHKVESFVTPQDFKSYETIAYSKGF 297 (329) Q Consensus 254 r~~gvdilTiGQ--YL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf 297 (329) .++|+|-+-+.. |.++|.. +-++.|++++...+. T Consensus 108 ~~~Gad~vll~~P~~~~~~~~----------~~~~~~~~v~~~~~~ 143 (221) T 3cpr_A 108 ASAGADGLLVVTPYYSKPSQE----------GLLAHFGAIAAATEV 143 (221) T ss_dssp HHTTCSEEEEECCCSSCCCHH----------HHHHHHHHHHHHCCS T ss_pred HHCCCCEEEECCCCCCCCCHH----------HHHHHHHHHHHHCCC T ss_conf 974989999778757898999----------999999999866389 No 36 >>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} (A:) Probab=73.58 E-value=7.6 Score=20.07 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=16.1 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCC Q ss_conf 899999999749823652578878767508972699986652235352234 Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCN 104 (329) Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~ 104 (329) ...+-+.+.+.+...+ ..+|...+..+-+.++++. T Consensus 29 k~~i~~~L~~~Gv~~i----------------E~g~~~~~~~~~~~~~~~~ 63 (298) T 2cw6_A 29 KIKLIDMLSEAGLSVI----------------ETTSFVSPKWVPQMGDHTE 63 (298) T ss_dssp HHHHHHHHHHTTCSEE----------------CCEECCCTTTCGGGTTHHH T ss_pred HHHHHHHHHHHCCCEE----------------EECCCCCCCCHHHHHHHHH T ss_conf 9999999998695989----------------9368758450787756999 No 37 >>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:) Probab=72.42 E-value=8 Score=19.88 Aligned_cols=195 Identities=11% Similarity=-0.049 Sum_probs=105.9 Q ss_pred HHHHHHHHHHH---HCCCCEEECCCCCCCHH-HHHCC---CCEEEEEECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHH Q ss_conf 66899999999---74982365257887876-75089---7269998665223535223446789-98888235799999 Q gi|254780676|r 52 SGYKETYNILR---SRNLTTVCEEAGCPNIG-ECWNK---NHATFMILGAICTRACTFCNVATGK-PQPLDPQEPENISW 123 (329) Q Consensus 52 ~~~~~~~~~l~---~~~L~TVCeeA~CPNi~-ECw~~---gtATFMilG~~CTR~C~FC~V~~G~-P~~~D~~EP~rvA~ 123 (329) +...+++++++ +.+...||--...--.. +-... ..+.. +. ...|..-....|. +.....-| ++ T Consensus 45 ~~~~~~~~~~~~a~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~--i~---~~~~~~~~~~~g~~~~~~~~~~----ve 115 (304) T 1to3_A 45 SVLTDFKVNAAKILSPYASAVLLDQQFCYRQAVEQNAVAKSCAXI--VA---ADDFIPGNGIPVDNVVLDKKIN----AQ 115 (304) T ss_dssp HHHHHHHHHHHHHHGGGCSEEEECTTTTHHHHHHTTCSCTTSEEE--EE---CEEEEEETTEEEEEEEECSSCC----HH T ss_pred HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEE--EE---ECCCCCCCCCCCCCCCCCCCCC----HH T ss_conf 168999999998620558556775677688887400347880699--98---4576468887644324445568----99 Q ss_pred HHHHHCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---------HHHHHHHHHCCCHHHH Q ss_conf 99970775189850-5445345325899999999998533586899815462344---------6899987410702332 Q gi|254780676|r 124 AVRSMKLSHVVITS-VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK---------PHALEKVVSAKPDVFN 193 (329) Q Consensus 124 av~~l~Lk~vViTS-V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~---------~~al~~v~~A~pdV~n 193 (329) -+.++|..-|-+.. +..||-.+.--..+.+.+.+.++..-...+|++..+.... ..+.+...++|+|++. T Consensus 116 ~a~~~GAd~v~~~~~~g~~~~~~~~~~~i~~v~~~~~~~g~~vile~i~~~~~~~d~~~~~~~i~~a~~~a~e~GaD~iK 195 (304) T 1to3_A 116 AVKRDGAKALKLLVLWRSDEDAQQRLNXVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYK 195 (304) T ss_dssp HHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEE T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 99863888899986248765699999999999999987399738987314777676554088999999987643976999 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 01383000275638970358999999999970891670140488764206889999999996699399750222 Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) - -| ...++......++.++.+-+..+. --+++|-|-+.++..+.+.+..+.|+..+.+|-=+ T Consensus 196 t-------~~-~~~~~~~~~~~v~~~~~~~~~~~~----pv~vaGG~~~~~~~~~~i~~a~~~Ga~G~~~GR~i 257 (304) T 1to3_A 196 V-------EX-PLYGKGARSDLLTASQRLNGHINX----PWVILSSGVDEKLFPRAVRVAXEAGASGFLAGRAV 257 (304) T ss_dssp E-------CC-GGGGCSCHHHHHHHHHHHHHTCCS----CEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHH T ss_pred E-------EC-CCCCHHHHHHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHH T ss_conf 4-------07-876045667899999998725899----68999289898999999999996799399856364 No 38 >>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A (X:84-401) Probab=71.52 E-value=8.4 Score=19.74 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=71.4 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCC---CCCC----CCH---HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH Q ss_conf 823579999999970775189850544---5345----325---899999999998533586899815462344689998 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDR---DDLD----DGG---AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEK 183 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~R---DDL~----DgG---A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~ 183 (329) -.++-.|+-++...+++++..+--.|. ..+| .+| .+.+.+.|+--+++.=.+.-|+=+| |...++ T Consensus 17 ~~~~lk~~id~ma~~k~N~lhlhl~D~~~~~~~p~l~~~~~~yT~~ei~~iv~yA~~~gI~viPeid~P---GH~~~~-- 91 (318) T 2epl_X 17 NLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVPCIQTL---AHLSAF-- 91 (318) T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEEEECCSS---SCCHHH-- T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCH---HHHHHH-- T ss_conf 999999999999980994799999846668895331147899799999999999997699998547873---778999-- Q ss_pred HHHCCCHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHH----------------- Q ss_conf 741070233201383000275638--9703589999999999708916701404887642068----------------- Q gi|254780676|r 184 VVSAKPDVFNHNLETVASNYLMVR--PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRN----------------- 244 (329) Q Consensus 184 v~~A~pdV~nHNiETV~rLy~~VR--p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~e----------------- 244 (329) +.+.|.....+ .-....+. .-+.|+=-.++++.+.++-. .-+=+|.-|... T Consensus 92 -~~~~~~~~~~~----~~~~~~l~~~~~~t~~~i~~i~~e~~~f~~-----~~iHiGgDE~~~~~~~~~~~~~~~~~~~~ 161 (318) T 2epl_X 92 -VKWGIKEVQEL----RDVEDILLIGEEKVYDLIEGMFQTMAHLHT-----RKINIGMDEAHLVGLGRYLIKHGFQNRSL 161 (318) T ss_dssp -HTCCSHHHHTT----EEETTEECTTCHHHHHHHHHHHHHHTTSSC-----CEEECCCCCCTTTTSSHHHHHHCCCCHHH T ss_pred -HHHCHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-----CEEEECCCCCHHHCCCHHHHHHCCCCHHH T ss_conf -97373853566----888851589986799999999999971899-----85896488852214313356616899899 Q ss_pred ----HHHHHHHHHHHCCCCEEECCHHC Q ss_conf ----89999999996699399750222 Q gi|254780676|r 245 ----EILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 245 ----Ei~e~l~DLr~~gvdilTiGQYL 267 (329) -+.++.+-|++.|..++-=+.=+ T Consensus 162 l~~~f~~~l~~~l~~~G~~~~~W~D~~ 188 (318) T 2epl_X 162 LMCQHLERVLDIADKYGFNCQMWSDMF 188 (318) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEESGGG T ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHH T ss_conf 999999999999997899899962672 No 39 >>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus} (A:) Probab=69.09 E-value=9.4 Score=19.39 Aligned_cols=188 Identities=12% Similarity=0.043 Sum_probs=100.2 Q ss_pred HHHHHHHHHCCCEEEEEC--C-----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCC Q ss_conf 999999970775189850--5-----4453453258999999999985335868998154623446----8999874107 Q gi|254780676|r 120 NISWAVRSMKLSHVVITS--V-----DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAK 188 (329) Q Consensus 120 rvA~av~~l~Lk~vViTS--V-----~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~ 188 (329) --|..+.+.|...+-++| + -.+|...-.-..+...+++|....+..-|=+=.+.--|+. ..++.++.|| T Consensus 50 ~sA~~~~~aG~~~i~~sg~~~a~~~~G~pD~~~~~~~e~~~~~~~i~~~~~~~pviaD~d~G~g~~~~v~~~v~~~~~aG 129 (318) T 1zlp_A 50 LSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAG 129 (318) T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHCC T ss_conf 99999998399999610599996567999888787799999999998640277710421567883206999999998531 Q ss_pred CHHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE-----EEECHHHHHHHHHHHHHCCC Q ss_conf 02332-----013830002756389703589999999999708916701404887-----64206889999999996699 Q gi|254780676|r 189 PDVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG-----LGETRNEILQLMDDLRTADV 258 (329) Q Consensus 189 pdV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG-----LGEt~eEi~e~l~DLr~~gv 258 (329) .+-++ +.-.+...+.+.+.|...+-..+..-..+.. ++++. ++. ..+..+|+++-.+-+.++|+ T Consensus 130 a~gv~IED~~~~k~~~~~~~~~~i~~~~~~~~i~aa~~a~~-~~d~~-----i~ARtd~~~~~~~~eai~Ra~a~~~AGA 203 (318) T 1zlp_A 130 AKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIG-DSDFF-----LVARTDARAPHGLEEGIRRANLYKEAGA 203 (318) T ss_dssp CCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHT-TSCCE-----EEEEECTHHHHHHHHHHHHHHHHHHTTC T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEE-----EEECCHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 12022101002444664321003468899999998875147-86225-----6764101003786999999988788626 Q ss_pred CEEECCHHCCC-----C--CCCCCCCCCCCH------HHHHHHHHHHHHCCCCEEECCCC-CCCCHHHHHHHH Q ss_conf 39975022278-----6--100780002384------69999999999749624340483-001031899999 Q gi|254780676|r 259 DFLTMGQYLQP-----T--RKHHKVESFVTP------QDFKSYETIAYSKGFLMVSASPL-TRSSYHAGDDFL 317 (329) Q Consensus 259 dilTiGQYL~P-----s--~~h~pV~ryv~P------~eF~~~~~~a~~~Gf~~V~SgPl-VRSSY~A~e~~~ 317 (329) |.+-+--.--+ - .-+.|+.-...+ -.|+++ .++|+..|.-++. .|+.|.+-.... T Consensus 204 d~i~i~~~~~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~el----~~lG~~~v~~~~~~~~~~~~~~~~a~ 272 (318) T 1zlp_A 204 DATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEF----KEMGFHLIAHSLTAVYATARALVNIM 272 (318) T ss_dssp SEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHH----HHHTCCEEEECSHHHHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHH----HHCCCEEEEECHHHHHHHHHHHHHHH T ss_conf 7677313688889999999853655540014885011239999----86797299964299999999999999 No 40 >>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} (A:) Probab=68.18 E-value=4.8 Score=21.46 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=85.3 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEE-------------ECCCCC--C Q ss_conf 882357999999997077518985054453453258-999999999985335868998-------------154623--4 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-QHFAEVISAIRESAPSTTIEV-------------LTPDFL--R 176 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-~hfa~~I~~Ir~~~P~~~IEv-------------LiPDf~--G 176 (329) +|..-..++++++.+-|..++-| |.+||-. ..+.+.++++++..+...+.. +.+|.. . T Consensus 17 pd~~~~~~~l~~l~~~g~d~ihi------gi~Dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 90 (234) T 2f6u_A 17 PDRTNTDEIIKAVADSGTDAVMI------SGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSA 90 (234) T ss_dssp TTSCCCHHHHHHHHTTTCSEEEE------CCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCCCCCCCSSEEEEEEETTBS T ss_pred CCCCCHHHHHHHHHHCCCCEEEE------CCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCEEEEECCC T ss_conf 89985899999999759999998------588644576699999999973997686516688876334765204776367 Q ss_pred CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC----------CCCH---------HH---H-------------------- Q ss_conf 4689998741070233201383000275638----------9703---------58---9-------------------- Q gi|254780676|r 177 KPHALEKVVSAKPDVFNHNLETVASNYLMVR----------PGAR---------YF---H-------------------- 214 (329) Q Consensus 177 ~~~al~~v~~A~pdV~nHNiETV~rLy~~VR----------p~a~---------Y~---r-------------------- 214 (329) ..+-++....++++.+-=..||.+.+.+.++ +... +. . T Consensus 91 ~~~~~~~~~~~g~~~i~~~~e~~~~~~~~i~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 170 (234) T 2f6u_A 91 DGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIE 170 (234) T ss_dssp BGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEE T ss_pred CCHHCCCHHHHHHHHHHHCCCCEEEECCCCHHCCCHHHHHCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 91120337999999998368845786897043234466626006943885169989899999999863301279999986 Q ss_pred ------HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf ------99999999970891670140488764206889999999996699399750222 Q gi|254780676|r 215 ------SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 215 ------SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) ..+.+...++.++ .-=+++|-|=+.+++.+ +.++|+|.+.+|-++ T Consensus 171 ~~~~~~~~~~~~~~~~~~~----~~~I~vgGGI~~~~~~~----~~~aGAD~vVvGSai 221 (234) T 2f6u_A 171 YSGTYGNPELVAEVKKVLD----KARLFYGGGIDSREKAR----EMLRYADTIIVGNVI 221 (234) T ss_dssp CTTSCCCHHHHHHHHHHCS----SSEEEEESCCCSHHHHH----HHHHHSSEEEECHHH T ss_pred CCCCCCCHHHHHHHHHHCC----CCCEEEECCCCCHHHHH----HHHHHCCEEEECHHH T ss_conf 4666542126999998636----99789986859999999----999609999989599 No 41 >>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* (A:) Probab=67.62 E-value=5.9 Score=20.85 Aligned_cols=170 Identities=14% Similarity=-0.015 Sum_probs=94.2 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCC-------CCCCCCHHHHHHHHHHHHHHHCC--CCE--EEEECCC---CCCCHHHHH Q ss_conf 579999999970775189850544-------53453258999999999985335--868--9981546---234468999 Q gi|254780676|r 117 EPENISWAVRSMKLSHVVITSVDR-------DDLDDGGAQHFAEVISAIRESAP--STT--IEVLTPD---FLRKPHALE 182 (329) Q Consensus 117 EP~rvA~av~~l~Lk~vViTSV~R-------DDL~DgGA~hfa~~I~~Ir~~~P--~~~--IEvLiPD---f~G~~~al~ 182 (329) .-.+..+..+.||.+++++.+-.+ +...+..-..+++.++++-+... ++. +|-..+. +....+.+. T Consensus 108 ~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~ 187 (309) T 2hk0_A 108 FFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCIEVLNRFENHVLNTAAEGV 187 (309) T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHH T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 99999999998389989854523668767888789999999999999999877640443002567765555669899998 Q ss_pred HHHH-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE- Q ss_conf 8741-07023320138300027563897035899999999997089167014048876420688999999999669939- Q gi|254780676|r 183 KVVS-AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF- 260 (329) Q Consensus 183 ~v~~-A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi- 260 (329) .+++ .+.+.+.-++.+--.. +.+ ....+.++.....-..+..|-...+-+||.+.+..+++..|++.|.+- T Consensus 188 ~l~~~~~~~~~~~~~D~~h~~----~~~---~~~~~~i~~~~~~i~~vHikD~~~~~~G~G~~d~~~~l~~L~~~gy~g~ 260 (309) T 2hk0_A 188 AFVKDVGKNNVKVXLDTFHXN----IEE---DSFGDAIRTAGPLLGHFHTGESNRRVPGKGRXPWHEIGLALRDINYTGA 260 (309) T ss_dssp HHHHHHTCTTEEEEEEHHHHH----HHC---SCHHHHHHHHGGGEEEEEECCTTSCCTTSSCCCHHHHHHHHHHTTCCSE T ss_pred HHHHHHCCCCCCCCCCCHHHH----HCC---CCHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCE T ss_conf 888862487532124405788----749---9999999872183889998479899999976499999999998599816 Q ss_pred EECCHHCCCCCCC-------CCCCCCCCHHHHHHHHHHHH Q ss_conf 9750222786100-------78000238469999999999 Q gi|254780676|r 261 LTMGQYLQPTRKH-------HKVESFVTPQDFKSYETIAY 293 (329) Q Consensus 261 lTiGQYL~Ps~~h-------~pV~ryv~P~eF~~~~~~a~ 293 (329) +++=.+-++-... -...+.+..+..+....-+. T Consensus 261 i~~E~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (309) T 2hk0_A 261 VIXEPFVKTGGTIGSDIKVWRDLSGGADIAKXDEDARNAL 300 (309) T ss_dssp EEECCCCCCSHHHHHHTTCCSCCSCSCCHHHHHHHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 9999687888256777777641454521123799999999 No 42 >>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural genomics, protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} (A:137-268) Probab=66.90 E-value=10 Score=19.09 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=29.8 Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC Q ss_conf 2068899999999966993997502227-8610078000238469999999999749624340 Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329) Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329) ++.+|+.+.++++...|+|.+-|=.-=- .+....+-.-|++|+++..+-+.|.+.|+....- T Consensus 27 ~~~~~~~~~v~~~~~~g~d~IKi~~dg~~~~~~~~~~~~~~~~e~l~~iv~~A~~~G~~v~~H 89 (132) T 3be7_A 27 DSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAH 89 (132) T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 679999999887665432110001245533234543111145777778888876543221110 No 43 >>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} (A:) Probab=66.77 E-value=10 Score=19.07 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=41.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCC Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234---468999874107 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAK 188 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~ 188 (329) .....|-...|..++++|...+++...---.+.+.+.-.| .++|-+..+--.+=--.|..-| ..+.+..+.+.. T Consensus 90 ~~~~~~~~~~a~~a~~~Gad~v~v~pP~~~~~s~~~i~~~---~~~i~~a~~~pi~iY~~P~~~g~~~~~~~l~~l~~~~ 166 (306) T 1o5k_A 90 TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQH---YKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADL 166 (306) T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHH---HHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCC T ss_conf 7439999999999996699999987999999799999999---9999970799789997863047886177899999705 Q ss_pred CHHHHH Q ss_conf 023320 Q gi|254780676|r 189 PDVFNH 194 (329) Q Consensus 189 pdV~nH 194 (329) |.|... T Consensus 167 ~~i~~~ 172 (306) T 1o5k_A 167 KNVVGI 172 (306) T ss_dssp TTEEEE T ss_pred CCEEEE T ss_conf 826999 No 44 >>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:523-742,A:762-821) Probab=65.78 E-value=11 Score=18.94 Aligned_cols=168 Identities=11% Similarity=0.025 Sum_probs=97.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHH-- Q ss_conf 4534532589999999999853358---68998154623446899987410702332013830002756389703589-- Q gi|254780676|r 140 RDDLDDGGAQHFAEVISAIRESAPS---TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFH-- 214 (329) Q Consensus 140 RDDL~DgGA~hfa~~I~~Ir~~~P~---~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~r-- 214 (329) +.-+.-.+..|+......-....+. ..++....+-..-.++.+.+.+++.|.+.=|+-..--+...-...+...| T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aa~~~~~~g~d~Iein~~~~~~~~~~~~g~~~~~~~~ 167 (280) T 1gte_A 88 IELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPE 167 (280) T ss_dssp CCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHH T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH T ss_conf 54524554999999777642126877345775688999999999997453588889997678999874333431101689 Q ss_pred -HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf -99999999970891670140488764206889999999996699399750--222786100780002384699999999 Q gi|254780676|r 215 -SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETI 291 (329) Q Consensus 215 -SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~ 291 (329) .++.++.+++.- ..-+.+++-=+.+|..+.+..|.++|+|.|+|- .+=|-...| .-..+.+..+..+.+. T Consensus 168 ~~~e~i~~v~~~~-----~~pv~vk~r~~~~d~~e~a~~l~e~Gvd~I~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 240 (280) T 1gte_A 168 LVRNICRWVRQAV-----QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMYGGV--SGTAIRPIALRAVTTI 240 (280) T ss_dssp HHHHHHHHHHHHC-----SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCEEE--ESGGGHHHHHHHHHHH T ss_pred HHHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE--CCHHHHHHHHHHHHHH T ss_conf 9999999986178-----99879997998278999999999859969999567776556700--2788899999999999 Q ss_pred HHHC-CCCEEECCCCCCCCHHHHHH Q ss_conf 9974-96243404830010318999 Q gi|254780676|r 292 AYSK-GFLMVSASPLTRSSYHAGDD 315 (329) Q Consensus 292 a~~~-Gf~~V~SgPlVRSSY~A~e~ 315 (329) .... ++.-+++|= +|+..++-+. T Consensus 241 ~~~~~~~~ii~~gg-i~~~~~~~~~ 264 (280) T 1gte_A 241 ARALPGFPILATGG-IDSAESGLQF 264 (280) T ss_dssp HHHSTTCCEEEESS-CCSHHHHHHH T ss_pred HHHCCCCCEEEECC-CCCHHHHHHH T ss_conf 98769987999899-8999999999 No 45 >>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A (A:1-117,A:285-340) Probab=64.96 E-value=9 Score=19.53 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH--CCCHHHHHCCCCCCCCCC Q ss_conf 5899999999998533586899815462344689998741--070233201383000275 Q gi|254780676|r 147 GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS--AKPDVFNHNLETVASNYL 204 (329) Q Consensus 147 GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~--A~pdV~nHNiETV~rLy~ 204 (329) ....+-+.|++-.+.+|+++|++-.-++.+-.+.|.+.+. ..|||+.-+-.-+..+.. T Consensus 18 ~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~kl~~~~a~g~~pDi~~~~~~~~~~~~~ 77 (173) T 2uvj_A 18 RHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSK 77 (173) T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECSTTHHHHHHHHHHHTCCCSEEEECGGGHHHHCT T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH T ss_conf 999999999999998849489999789379999999999779988699989578999998 No 46 >>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:475-637) Probab=63.69 E-value=12 Score=18.68 Aligned_cols=72 Identities=13% Similarity=-0.112 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC Q ss_conf 35799999999707751898505445345325899999999998533586899815462344689998741070233201 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN 195 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN 195 (329) +-|..+.++++.-+-..++|+|.+ .+....+.+.|+++|+..|++.|=+=-.=|..+ .+.+.++|.|.+-++ T Consensus 73 ~~p~~~~~a~~~~~~d~i~ls~~~-----~~~~~~~~~~i~~lr~~~~~~~vi~GG~~~~~~---~~~~~~~G~D~~~~~ 144 (163) T 1req_B 73 GTTAEIVEAFKKSGAQVADLCSSA-----KVYAQQGLEVAKALKAAGAKALYLSGAFKEFGD---DAAEAEKLIDGRLFM 144 (163) T ss_dssp CCHHHHHHHHHHHTCSEEEEECCH-----HHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGG---GHHHHHHHCCCEECT T ss_pred CCHHHHHHHHHHCCCCEEEEECCC-----CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---HHHHHHCCCCEEECC T ss_conf 998999999986599889995786-----106888999999999669985999727887423---568997087605018 No 47 >>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} (A:1-351) Probab=62.76 E-value=12 Score=18.57 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=10.8 Q ss_pred HHHHHHCCCCEEECCHHCCC Q ss_conf 99999669939975022278 Q gi|254780676|r 250 MDDLRTADVDFLTMGQYLQP 269 (329) Q Consensus 250 l~DLr~~gvdilTiGQYL~P 269 (329) ..-+-.-|+-+|--||-.-= T Consensus 297 ~~~~~~~G~P~i~~G~E~g~ 316 (351) T 3dhu_A 297 TWIFMQRGIPLIYNGQEFLA 316 (351) T ss_dssp HHHHHSSSEEEEETTGGGTC T ss_pred HHHHCCCCCCEECCCEEECC T ss_conf 67750898763048835233 No 48 >>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:152-269) Probab=62.65 E-value=12 Score=18.55 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=39.0 Q ss_pred EECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC Q ss_conf 420688999999999669939975---022278-610078000238469999999999749624340 Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTM---GQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329) Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329) -.+.+|++..++.+.+-|.|.+++ +-|+.+ .....+ +++++|+..+-+.|.+.|+....- T Consensus 12 v~~~~~~~~~vk~~~~~g~d~ik~~~~~~~~~~~~~~~~~---~~~~eel~~~v~~A~~~G~~v~~H 75 (118) T 3gnh_A 12 SDSPDEARKAVRTLKKYGAQVIXICATGGVFSRGNEPGQQ---QLTYEEMKAVVDEAHMAGIKVAAH 75 (118) T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCB---CSCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 3309999999998775221033332024444333466555---578999999999999709907885 No 49 >>1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} (A:) Probab=62.22 E-value=8.3 Score=19.79 Aligned_cols=107 Identities=11% Similarity=0.123 Sum_probs=75.9 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHCCCHHH------------HHCCCCCCCCCCCCCCC Q ss_conf 453258999999999985335868998-15462344689998741070233------------20138300027563897 Q gi|254780676|r 143 LDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRKPHALEKVVSAKPDVF------------NHNLETVASNYLMVRPG 209 (329) Q Consensus 143 L~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~~A~pdV~------------nHNiETV~rLy~~VRp~ 209 (329) |.+|--.+..+.+..+|+.+-.+-|-+ |+..+..++.+++-+.+-+||-+ ..++-|+-|+| +-+. T Consensus 37 ll~g~I~~L~~~v~~lk~~gK~vfVHiDli~GL~~D~~ai~fLk~~~~dGIISTk~~~i~~Ak~~gl~tIqRiF--liDS 114 (188) T 1vkf_A 37 LLKSDILNLKFHLKILKDRGKTVFVDXDFVNGLGEGEEAILFVKKAGADGIITIKPKNYVVAKKNGIPAVLRFF--ALDS 114 (188) T ss_dssp ECCEETTTHHHHHHHHHHTTCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEESCHHHHHHHHHTTCCEEEEEE--CCSH T ss_pred EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEEEE--EEEH T ss_conf 95684888999999999869989998651677788879999999759999997889999999977992898765--4527 Q ss_pred CHHHHHHHHHHHHHHCCCEEE-------------ECCCEEEEEEECHHHHHHHHH Q ss_conf 035899999999997089167-------------014048876420688999999 Q gi|254780676|r 210 ARYFHSLRLLQRVKELDPLIF-------------TKSGIMLGLGETRNEILQLMD 251 (329) Q Consensus 210 a~Y~rSL~vL~~aK~~~~~i~-------------TKSGlMvGLGEt~eEi~e~l~ 251 (329) ..|+++++.++..+--.-.+. .+.=+-=||=+|.|||.+++. T Consensus 115 ~al~~~~~~i~~~~PD~IEilPG~~~~~ii~~~~~~PiIAGGLI~~~edv~~al~ 169 (188) T 1vkf_A 115 KAVERGIEQIETLGVDVVEVLPGAVAPKVARKIPGRTVIAAGLVETEEEAREILK 169 (188) T ss_dssp HHHHHHHHHHHHHTCSEEEEESGGGHHHHHTTSTTSEEEEESCCCSHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH T ss_conf 7899999998536999999865341799998625992996367188999999996 No 50 >>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:1-333) Probab=61.64 E-value=13 Score=18.43 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=45.5 Q ss_pred HHHHHHHHHHHHHHCCC-CEEEEECCCCC---------CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 89999999999853358-68998154623---------446899987410702332013830002756389703589999 Q gi|254780676|r 148 AQHFAEVISAIRESAPS-TTIEVLTPDFL---------RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLR 217 (329) Q Consensus 148 A~hfa~~I~~Ir~~~P~-~~IEvLiPDf~---------G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~ 217 (329) +....++|++||+..+. ..|-+-+.... ...+-++.+.+++.|.+.--.-+....++.......-..-++ T Consensus 191 ~r~~~eii~air~~~g~~~~v~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~g~d~l~v~~~~~~~~~~~~~~~~~~~~~~~ 270 (333) T 1ps9_A 191 MRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSW 270 (333) T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 89999999989866299735888436511256899889999999999982873030223543456765567765116699 Q ss_pred HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 99999970891670140488764206889999999996699399750222 Q gi|254780676|r 218 LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 218 vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) +++.+|+... +-=++.|-.-|.++..++ |.+-+||++-||.-+ T Consensus 271 ~~~~~~~~~~----~pvi~~G~i~~~~~a~~~---l~~g~~D~V~igR~~ 313 (333) T 1ps9_A 271 VTRKLKGHVS----LPLVTTNRINDPQVADDI---LSRGDADMVSMARPF 313 (333) T ss_dssp HHHHHTTSCS----SCEEECSSCCSHHHHHHH---HHTTSCSEEEESTHH T ss_pred HHHHHHHHCC----CCEEEECCCCCHHHHHHH---HHCCCCCEEHHHHHH T ss_conf 9999974157----778983797779999999---987998764113598 No 51 >>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245) Probab=60.30 E-value=14 Score=18.27 Aligned_cols=92 Identities=8% Similarity=-0.018 Sum_probs=56.2 Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHH Q ss_conf 4623446899987410702332013830002756389703589999999999708916701404887642-068899999 Q gi|254780676|r 172 PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLM 250 (329) Q Consensus 172 PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l 250 (329) .|+.+-...++.++++|.+.+-=+--|-|-.+ -+-+..+++++.+.+... .+--+|+|.|. +-+|.++.. T Consensus 22 iD~~~~~~~i~~l~~~Gv~gi~~~G~tgE~~~------Lt~~Er~~l~~~~~~~~~---~~~~v~~g~~~~~~~~~ie~a 92 (245) T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGSTGEFAY------LGTAQREAVVRATIEAAQ---RRVPVVAGVASTSVADAVAQA 92 (245) T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGG------CCHHHHHHHHHHHHHHHT---TSSCBEEEEEESSHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCHHHH------CCHHHHHHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHH T ss_conf 69999999999999769998998564321655------989999988765430354---432047403455568787754 Q ss_pred HHHHHCCCCEEECC--HHCCCCCC Q ss_conf 99996699399750--22278610 Q gi|254780676|r 251 DDLRTADVDFLTMG--QYLQPTRK 272 (329) Q Consensus 251 ~DLr~~gvdilTiG--QYL~Ps~~ 272 (329) +...++|+|.+-+. .|..||.. T Consensus 93 ~~a~~~G~d~il~~pP~~~~~~~~ 116 (245) T 3eb2_A 93 KLYEKLGADGILAILEAYFPLKDA 116 (245) T ss_dssp HHHHHHTCSEEEEEECCSSCCCHH T ss_pred HCCCCCCCEEEECCCCCCCCCCHH T ss_conf 202357950785046653565478 No 52 >>2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} (A:) Probab=59.63 E-value=14 Score=18.20 Aligned_cols=85 Identities=9% Similarity=0.082 Sum_probs=35.2 Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEE--ECCC-EEEE---EEECHHHHHHHH Q ss_conf 68999874107023320138300027563897035899999999997-089167--0140-4887---642068899999 Q gi|254780676|r 178 PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKE-LDPLIF--TKSG-IMLG---LGETRNEILQLM 250 (329) Q Consensus 178 ~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~-~~~~i~--TKSG-lMvG---LGEt~eEi~e~l 250 (329) .+.++.++++|.+-++=+=.++..-- .+.+.+.+-.++..+..+.. .++++. -.+- ...| .+++.+|.++-+ T Consensus 96 ~~~v~~~~~aGa~~v~ied~~~~~~~-~~~~~~~~~~~i~a~~~~~~~~~~~~~i~art~~~~~~~~~~~~~~~e~i~r~ 174 (255) T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGK-RVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPXVEAIKRI 174 (255) T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTT-EECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99999999833643675035366675-32339999999999998665148706874127778606774223558999999 Q ss_pred HHHHHCCCCEEEC Q ss_conf 9999669939975 Q gi|254780676|r 251 DDLRTADVDFLTM 263 (329) Q Consensus 251 ~DLr~~gvdilTi 263 (329) +...++|.|.+-+ T Consensus 175 ~~~~~aGA~~i~~ 187 (255) T 2qiw_A 175 KLXEQAGARSVYP 187 (255) T ss_dssp HHHHHHTCSEEEE T ss_pred HHHHHCCCCEEEE T ss_conf 9999728983650 No 53 >>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} (A:) Probab=59.19 E-value=11 Score=18.85 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=29.9 Q ss_pred HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC Q ss_conf 999999999708916701404887642068899999999966993997502227 Q gi|254780676|r 215 SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ 268 (329) Q Consensus 215 SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~ 268 (329) ..+-++.++.......+..+...|.+-...+-..+..++.+.|+|++.+|..+- T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Ga~~ivvGR~I~ 225 (245) T 1eix_A 172 EAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVT 225 (245) T ss_dssp GHHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHH T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHHC T ss_conf 899999872545558804757545454887774799999985999999895661 No 54 >>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:495-825,A:946-1003) Probab=58.95 E-value=14 Score=18.12 Aligned_cols=72 Identities=13% Similarity=0.258 Sum_probs=38.6 Q ss_pred HHHCCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCC---EEECCHHCCCCCCC-CC--------CCCCCCHH Q ss_conf 997089167014048876420-----68899999999-966993---99750222786100-78--------00023846 Q gi|254780676|r 222 VKELDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVD---FLTMGQYLQPTRKH-HK--------VESFVTPQ 283 (329) Q Consensus 222 aK~~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvd---ilTiGQYL~Ps~~h-~p--------V~ryv~P~ 283 (329) |-++|-++. .+=+.||||. -|.++..++.+ ++.|+| +..|.+|+++-... .| -..-..|+ T Consensus 262 Ai~aGvd~V--D~si~gmg~~tGn~~le~lv~~L~~~g~~~~idl~~l~~i~~~~~~~~~~~~~~~~~~~G~p~~~l~~~ 339 (389) T 3hbl_A 262 AIDAGVDII--DTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPPGEYLEPV 339 (389) T ss_dssp HHHTTCSEE--EEBCGGGCSBTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGGGGCCSCCSCGGGGSCCC T ss_pred HHHCCCCEE--EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC T ss_conf 997499889--841133557768976899999984588665562989999999999999997522466666656747984 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999974 Q gi|254780676|r 284 DFKSYETIAYSK 295 (329) Q Consensus 284 eF~~~~~~a~~~ 295 (329) .|+..++...++ T Consensus 340 d~~~~~~~~~~~ 351 (389) T 3hbl_A 340 DFEKVRELLEEE 351 (389) T ss_dssp CHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 799999999985 No 55 >>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} (A:) Probab=57.55 E-value=15 Score=17.96 Aligned_cols=125 Identities=7% Similarity=0.001 Sum_probs=72.6 Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHHH-CCCEEEECCCEEEEEEECHHHHHHHHHHH Q ss_conf 87410702332013830002756389703--------5899999999997-08916701404887642068899999999 Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGAR--------YFHSLRLLQRVKE-LDPLIFTKSGIMLGLGETRNEILQLMDDL 253 (329) Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~--------Y~rSL~vL~~aK~-~~~~i~TKSGlMvGLGEt~eEi~e~l~DL 253 (329) .+...+.+.+.=|+-+.+.. ++.+.. .+..+++++.+++ .+..+. -.+-++.+++.+|..+.+.-| T Consensus 160 ~~~~~ga~~~~l~~~~~~~~---~~~~~~~g~~l~~~~~~~~~ii~~vr~~~~~~~~--vk~~~~~~~~~~~~~~~a~~l 234 (336) T 1f76_A 160 EKIYAYAGYIAINISSPNTP---GLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVP--IAVKIAPDLSEEELIQVADSL 234 (336) T ss_dssp HHHGGGCSEEEEECCCSSST---TGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCC--EEEECCSCCCHHHHHHHHHHH T ss_pred HHHCCCCCEEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHH T ss_conf 85332578545447898875---6567742577776589999999999975287631--899954899989999999999 Q ss_pred HHCCCCEEECCH----HCCCCCC------CCCCCCCCCHHHHHHHHHHHHHC--CCCEEECCCCCCCCHHHH Q ss_conf 966993997502----2278610------07800023846999999999974--962434048300103189 Q gi|254780676|r 254 RTADVDFLTMGQ----YLQPTRK------HHKVESFVTPQDFKSYETIAYSK--GFLMVSASPLTRSSYHAG 313 (329) Q Consensus 254 r~~gvdilTiGQ----YL~Ps~~------h~pV~ryv~P~eF~~~~~~a~~~--Gf~~V~SgPlVRSSY~A~ 313 (329) .++|+|.+++.. .+.-... ...-.....|..+..+..+.... ++.-+.+|= ++|.-.|. T Consensus 235 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ipvi~~GG-I~~~~da~ 305 (336) T 1f76_A 235 VRHNIDGVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGG-IDSVIAAR 305 (336) T ss_dssp HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESS-CCSHHHHH T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHH T ss_conf 966998899992675211334642123457656632369999999999998289957999899-99999999 No 56 >>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} (A:) Probab=56.66 E-value=16 Score=17.86 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=108.0 Q ss_pred CHHHCCCCCCC--HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 82450017998--6689999999974982365257887876750897269998665223535223446789988882357 Q gi|254780676|r 41 PDWIRVRAPVS--SGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEP 118 (329) Q Consensus 41 P~Wlk~~~p~~--~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP 118 (329) |..+-...-.| ..+..+-.+++++++ .|||-+-|+.+-.+ ....++++- T Consensus 41 ~~~v~lTFDDG~~~~~~~~~~iL~k~~~-------------------~aTfFv~~~~~~~~----------~~~~~~~~~ 91 (254) T 2iw0_A 41 PGLVALTYDDGPFTFTPQLLDILKQNDV-------------------RATFFVNGNNWANI----------EAGSNPDTI 91 (254) T ss_dssp SSEEEEEEESCSCTTHHHHHHHHHHHTC-------------------CCEEEECSBSSSBT----------TSTTHHHHH T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC-------------------CEEEEEECCCCCCC----------HHHHCHHHH T ss_conf 9979999818980539999999998798-------------------19999978865644----------355699999 Q ss_pred HHHHHHHHHH---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC Q ss_conf 9999999970---7751898505445345325899999999998533586899815462344689998741070233201 Q gi|254780676|r 119 ENISWAVRSM---KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN 195 (329) Q Consensus 119 ~rvA~av~~l---~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN 195 (329) ...+.+-..+ +..|.-++.++ ++.-...+....+.+++.......-..-|-..-+...++.+.+.+-.+..++ T Consensus 92 ~~~~~~g~ei~~Ht~~H~~~~~~~----~~~~~~ei~~~~~~l~~~~g~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~ 167 (254) T 2iw0_A 92 RRMRADGHLVGSHTYAHPDLNTLS----SADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTN 167 (254) T ss_dssp HHHHHTTCEEEECCSSCCCGGGSC----HHHHHHHHHHHHHHHHHHHSCEESEECCGGGCCCHHHHHHHHHTTCEEECCS T ss_pred HHHHHCCCEEECCCCCCCCHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC T ss_conf 999855878841641115453317----6888899999999999861988732567067887899999997599898077 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE-EEEEECHH----HHHHHHHHHHHCCCCEEECCHHCCC Q ss_conf 38300027563897035899999999997089167014048-87642068----8999999999669939975022278 Q gi|254780676|r 196 LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM-LGLGETRN----EILQLMDDLRTADVDFLTMGQYLQP 269 (329) Q Consensus 196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM-vGLGEt~e----Ei~e~l~DLr~~gvdilTiGQYL~P 269 (329) ..+..-.+.. .....++ ..+.+.... ....+.|.. +...-..+ -+-+.++-|++.|-.++|+.+++-- T Consensus 168 ~~~~~~~~~~---~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~G~~~~~~~~~~~~ 240 (254) T 2iw0_A 168 LDTKDYENNK---PETTHLS--AEKFNNELS-ADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGD 240 (254) T ss_dssp EECCTTTSCS---TTTHHHH--HHHHHHHSC-SCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTC T ss_pred CCCCCCCCCC---CCHHHHH--HHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCC T ss_conf 4563145789---7416899--999999997-34479998999469976589999999999999879989887995264 No 57 >>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} (A:117-328,A:386-528) Probab=55.92 E-value=16 Score=17.78 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHCCCCE Q ss_conf 9999999985335868 Q gi|254780676|r 151 FAEVISAIRESAPSTT 166 (329) Q Consensus 151 fa~~I~~Ir~~~P~~~ 166 (329) +.+..+++++.+|+.. T Consensus 173 l~el~~~~~~~~~~~~ 188 (355) T 2bhu_A 173 LTELAQEIHELGGTHL 188 (355) T ss_dssp HHHHHHHHHTTCSCCE T ss_pred HHHHHHHHHHHCCCCE T ss_conf 4677888876478705 No 58 >>3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} (A:1-65,A:123-313) Probab=55.80 E-value=16 Score=17.77 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=67.9 Q ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH Q ss_conf 3579999999970775-189850544534532589999999999853358689981546234468999874107023320 Q gi|254780676|r 116 QEPENISWAVRSMKLS-HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk-~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329) +-+..|++.+++.+.. .|++.|-+ ...++.+++.+|++.+-.|+.....................+= T Consensus 108 ~~~~~v~~~l~~~~~~~rv~vsSf~------------~~~l~~i~~~~p~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 175 (256) T 3l12_A 108 EXVAAVLADVRRYRXEPRTVXHSFD------------WALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDR 175 (256) T ss_dssp HHHHHHHHHHHHTTCGGGEEEEESC------------HHHHHHHHHHCTTSCEEEEECCCC-------------CCCTTT T ss_pred HHHHHHHHHHHHCCCCCCEEEEECC------------HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHH T ss_conf 8999999999862887747999599------------9999999986999868998732422120445443221521555 Q ss_pred CCCCCCCCCCCCCC---CCHHH-HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC Q ss_conf 13830002756389---70358-999999999970891670140488764206889999999996699399750 Q gi|254780676|r 195 NLETVASNYLMVRP---GARYF-HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG 264 (329) Q Consensus 195 NiETV~rLy~~VRp---~a~Y~-rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG 264 (329) +...........+. .-.|. -+-++++.+++.|..+.+= --++. +.|..+.+.|||.++-. T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~W------Tvn~~----~~~~~~~~~GVdgIiTD 239 (256) T 3l12_A 176 XTESLPQAVASAGGQLWCPYFLDVTPELVAEAHDLGLIVLTW------TVNEP----EDIRRXATTGVDGIVTD 239 (256) T ss_dssp CCSCHHHHHHHHTCSEEEEBGGGCCHHHHHHHHHTTCEEEEB------CCCSH----HHHHHHHHHTCSEEEES T ss_pred HHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHCCCEEEEE------CCCCH----HHHHHHHHCCCCEEEEC T ss_conf 356778899851883114424108999999999879989997------99989----99999986599999978 No 59 >>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} (A:) Probab=55.33 E-value=16 Score=17.71 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=20.4 Q ss_pred EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC Q ss_conf 76420688999999999669939975022278610 Q gi|254780676|r 238 GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329) Q Consensus 238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329) .-|.+.+|.++.+..|.+.|+|.+++...-.++.. T Consensus 223 ~~~~~~~e~~~~~~~l~~~g~~~i~~~~~~~~~~~ 257 (338) T 1z41_A 223 DKGLDIADHIGFAKWXKEQGVDLIDCSSGALVHAD 257 (338) T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 78720043699999999849863112212334555 No 60 >>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} (A:134-273) Probab=54.90 E-value=17 Score=17.67 Aligned_cols=69 Identities=3% Similarity=-0.008 Sum_probs=34.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCEEEC-CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC Q ss_conf 048876420688999999999669939975-022278610078000238469999999999749624340 Q gi|254780676|r 234 GIMLGLGETRNEILQLMDDLRTADVDFLTM-GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329) Q Consensus 234 GlMvGLGEt~eEi~e~l~DLr~~gvdilTi-GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329) +.+-..-++.+|......+....++|.+-+ ..-.-.+.....-.-|++||+|..+-+.|.+.|+....- T Consensus 29 ~~~~~~~~~~~e~~~~~~~~~~~~~d~iKi~~dg~~~~~~~~~~~~~~~~e~l~~~v~~a~~~G~~v~~H 98 (140) T 3feq_A 29 GAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAH 98 (140) T ss_dssp TCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2211245789999999999765022022211145533234553210001566666677776420012221 No 61 >>1zy9_A Alpha-galactosidase; TM1192, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} (A:193-388) Probab=54.32 E-value=17 Score=17.60 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=40.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CC-CHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 88823579999999970775189850544534----53-25899999999998533586899 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDL----DD-GGAQHFAEVISAIRESAPSTTIE 168 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL----~D-gGA~hfa~~I~~Ir~~~P~~~IE 168 (329) ..|.++-...+..++.||..+++|..+--+|. +| +.-..+.+.|++++++.-.+.+- T Consensus 16 ~~~~~~v~~~l~~~k~lG~~~i~ld~~~~~~~~~~~~~~~~~~d~~~~v~~~h~~g~~v~~~ 77 (196) T 1zy9_A 16 DLTWEETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEXAKVIAENGFIPGIW 77 (196) T ss_dssp GCCHHHHHHHHHHGGGTTCSEEEECTTSEEETTEEEEECTTCCCHHHHHHHHHHTTCEEEEE T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 78999999999998718971998377867478854588654689999999998679808999 No 62 >>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* (A:1-165) Probab=54.01 E-value=17 Score=17.57 Aligned_cols=79 Identities=6% Similarity=-0.000 Sum_probs=47.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 25899999999998533586899815462344689998741070233201383000275638970358999999999970 Q gi|254780676|r 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL 225 (329) Q Consensus 146 gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~ 225 (329) |-.-...-.++++|+..|++.|.+++.. ..+-++...|.|-..-.-...+............+.+..++..+.. T Consensus 12 GD~i~~~p~l~~Lk~~~P~a~I~~l~~~------~~~~l~~~~p~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 85 (165) T 2gt1_A 12 GDVLHTLPALTDAQQAIPGIKFDWVVEE------GFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAK 85 (165) T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEEG------GGTHHHHTSTTEEEEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECH------HHHHHHHHCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 8999999999999987899989999896------4899985199855899945500013554005789999999997116 Q ss_pred CCEEE Q ss_conf 89167 Q gi|254780676|r 226 DPLIF 230 (329) Q Consensus 226 ~~~i~ 230 (329) +.++. T Consensus 86 ~~Dlv 90 (165) T 2gt1_A 86 NYDAV 90 (165) T ss_dssp BCSEE T ss_pred CCCEE T ss_conf 88889 No 63 >>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020) Probab=53.81 E-value=17 Score=17.55 Aligned_cols=169 Identities=9% Similarity=0.045 Sum_probs=74.3 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHHHHHHHHHC Q ss_conf 82357999999997077518985054----4534532589999999999853358689981546234--46899987410 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVD----RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR--KPHALEKVVSA 187 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~----RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G--~~~al~~v~~A 187 (329) |...-+...++++..|....+--+.+ -.|-.-.-...+.+.++++.+..... +-++|.-| ..+++..++.+ T Consensus 158 ~~~~~~~~i~~v~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~~~~a~~l~~~G~~~---i~i~Dt~G~~~P~~~~~Lv~~ 234 (388) T 2qf7_A 158 WVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHI---IAVXDMAGLLKPAAAKVLFKA 234 (388) T ss_dssp CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSE---EEEEETTCCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE---EEECCCCCCCCCHHHHHHHHH T ss_conf 78877889999997278035788864125778888678899999999999759988---986177666561669999999 Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCC-- Q ss_conf 7023320138300027563897035899999999997089167014048876420-----68899999999-966993-- Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVD-- 259 (329) Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvd-- 259 (329) =-+..+= -=.+-...++.-.+...-.|-++|-++. .+=|.||||- -|+++..|... ++.|+| T Consensus 235 lk~~~~i--------~i~~H~Hnd~Gla~An~laAi~aGad~V--D~si~GmG~~tGn~~le~lv~~L~~~~~~~~idl~ 304 (388) T 2qf7_A 235 LREATGL--------PIHFHTHDTSGIAAATVLAAVEAGVDAV--DAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPA 304 (388) T ss_dssp HHHHCSS--------CEEEEECBTTSCHHHHHHHHHHTTCSEE--EEBCGGGCSBTSCCBHHHHHHHHTTSTTCCCCCHH T ss_pred HHHCCCC--------EEEEEECCCCCHHHHHHHHHHHCCCCEE--EECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH T ss_conf 9845497--------2899625653026689999997698666--51344445788887579999997557978898989 Q ss_pred -EEECCHHCCCC-CCCCCC--------CCCCCHHHHHHHHHHHHHC Q ss_conf -99750222786-100780--------0023846999999999974 Q gi|254780676|r 260 -FLTMGQYLQPT-RKHHKV--------ESFVTPQDFKSYETIAYSK 295 (329) Q Consensus 260 -ilTiGQYL~Ps-~~h~pV--------~ryv~P~eF~~~~~~a~~~ 295 (329) +.-|.+|+++- ....|. -....|..|+..++...++ T Consensus 305 ~l~~i~~~~~~~~~~~~~~~~~i~G~p~~~l~p~d~~~~~~~l~~~ 350 (388) T 2qf7_A 305 WIRRISFYWEAVRNQYAAFESDLKGPPGSLLKEADLDAERKVIEKK 350 (388) T ss_dssp HHHHHHHHHHHHHGGGGGGCCCCCSCGGGGSCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 9887666799999987553145557721148855779999999975 No 64 >>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} (A:) Probab=52.95 E-value=15 Score=18.01 Aligned_cols=136 Identities=8% Similarity=-0.043 Sum_probs=69.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH---HHHHHHCCCHHH Q ss_conf 35799999999707751898505445345325899999999998533586899815462344689---998741070233 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA---LEKVVSAKPDVF 192 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~a---l~~v~~A~pdV~ 192 (329) +.-.+..+..+.||.+++++-+..... ...+.+..+..++..-...+|...+.+...... +..+.+... T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~~~~~~-----~~~l~~l~~~a~~~Gv~l~iE~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (264) T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPE-----QPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQ--- 155 (264) T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCS-----SCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTT--- T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC-----CCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--- T ss_conf 999999999997498989986697410-----132899999998539889998489837688889999999853689--- Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCC-CE-EEECCCEEEEEEECHHHHHHHHHHHHHCCCCE Q ss_conf 20138300027563897035899999999-99708-91-67014048876420688999999999669939 Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQR-VKELD-PL-IFTKSGIMLGLGETRNEILQLMDDLRTADVDF 260 (329) Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~-~~-i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi 260 (329) -|+--.-......+.+.+....++.+.- ++... .+ .....+-.+.+|+-.-+..+.+.-|++.|.+. T Consensus 156 -~~lg~~~D~~H~~~~~~~~~~~~~~~~~~i~~vh~~d~~~~~~~~~~~~g~G~id~~~~~~~L~~~g~~g 225 (264) T 1yx1_A 156 -LDLAXTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGV 225 (264) T ss_dssp -CSEEEEEETTGGGGGTCCHHHHHHHHGGGEEEEEECEEEECTTSCEEEECCCHHHHHHHHHHHTTSCTTC T ss_pred -CCEEEEECCHHHHHCCCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf -8469994452254359999999998532088877403676777750378899889899999999579996 No 65 >>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A (A:) Probab=52.79 E-value=18 Score=17.44 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=14.1 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 82357999999997077518985054 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVD 139 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~ 139 (329) ...|-...|+.++++|...++++... T Consensus 81 s~~~~ie~a~~a~~~Gad~vlv~~P~ 106 (292) T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTVTPY 106 (292) T ss_dssp SHHHHHHHHHHTTTSSCSEEEEECCC T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 06889998766886399641760787 No 66 >>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* (A:) Probab=52.21 E-value=18 Score=17.38 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=53.9 Q ss_pred CCHHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 8823579999999970775--189850544534532589999999999853358689981546 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD 173 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD 173 (329) .....-+|+|+.+.++.++ .-.+|+|+....-......|..+.+++.+..|++.+|....| T Consensus 163 ~t~~~~~ria~~Af~~A~~~~rk~vt~v~Kanv~~~~~g~f~~~~~~~a~~yp~i~~~~~~vD 225 (364) T 3flk_A 163 FTRRGVDRILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHID 225 (364) T ss_dssp EEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHH T ss_pred EEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 559999999999999999868996788753764100053788888876213785312020288 No 67 >>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} (A:) Probab=51.79 E-value=18 Score=17.33 Aligned_cols=62 Identities=10% Similarity=0.159 Sum_probs=53.0 Q ss_pred CCCHHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 88823579999999970775--189850544534532589999999999853358689981546 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD 173 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD 173 (329) .....+-+|+++.+-++..+ .-.+|+|+....-...-..|.++.+++.+..|++.+|-+..| T Consensus 140 ~~t~~~~~ri~~~Af~~A~~~~rk~Vt~v~K~ni~~~~~g~~~~~~~~~a~~yp~I~~~~~~vD 203 (333) T 1x0l_A 140 VISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVD 203 (333) T ss_dssp EEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHH T ss_pred CCCCCEEEHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHH T ss_conf 5651114445779999999769987510673761321236898788887613464799864187 No 68 >>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* (A:34-337) Probab=51.54 E-value=19 Score=17.31 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=96.2 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH-H------HHHHHHHHHHHHHCCCCEEEE---ECC------------ Q ss_conf 235799999999707751898505445345325-8------999999999985335868998---154------------ Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGG-A------QHFAEVISAIRESAPSTTIEV---LTP------------ 172 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG-A------~hfa~~I~~Ir~~~P~~~IEv---LiP------------ 172 (329) .++-.+..+-+..+|++.|.+-.|-.+.++|.- + +...+.|++||+..|+..|=+ |.| T Consensus 32 id~l~~~v~~~~~lGI~~v~lFgv~~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p~l~ii~Dvclc~YT~hGHcGil~~ 111 (304) T 1w5q_A 32 IDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDD 111 (304) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCT T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCC T ss_conf 99999999999987983899874531555677664346861188999999999736169985012323245404674346 Q ss_pred C-CCCCHHHHHHH-------HHCCCHHHH------------------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 6-23446899987-------410702332------------------013830002756389703589999999999708 Q gi|254780676|r 173 D-FLRKPHALEKV-------VSAKPDVFN------------------HNLETVASNYLMVRPGARYFHSLRLLQRVKELD 226 (329) Q Consensus 173 D-f~G~~~al~~v-------~~A~pdV~n------------------HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~ 226 (329) | ---|...|+.+ .+||.|+++ |+.+-|.=+.-.+.-.+.|-- -.|.+-... T Consensus 112 ~g~vdNd~Tl~~l~~~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKyaS~fYG---PFRdAa~Sa 188 (304) T 1w5q_A 112 DGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYG---PFRDAVGSA 188 (304) T ss_dssp TSCBCHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGH---HHHHC---- T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH---HHHHHHHCH T ss_conf 65657399999999999999972688674046541589999999996688685032156552334314---589986251 Q ss_pred CEE--EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 916--7014048876420688999999999669939975---022278-----610078000238469999999999749 Q gi|254780676|r 227 PLI--FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYSKG 296 (329) Q Consensus 227 ~~i--~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~~G 296 (329) |.. --|+.--+--+-..|-+.++..|+.+ |.|+|-+ .-||-= ..-.+||.-|---.||..++.-|..-- T Consensus 189 p~f~~gDrksYQmdp~n~~eAlre~~~Di~E-GAD~iMVKPal~YLDii~~~k~~~~~Pv~aY~VSGEYaMikaAa~~G~ 267 (304) T 1w5q_A 189 SNLGKGNRATYQMDPANSDEALHEVAADLAE-GADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGW 267 (304) T ss_dssp ------CGGGTSBCTTCSHHHHHHHHHHHHT-TCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTS T ss_pred HCCCCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC T ss_conf 2048998104652789989999999998865-887688502046779999999756998899978159999999998699 Q ss_pred CC----------EEECCCCCCCCHHHHHHHHHHHHH Q ss_conf 62----------434048300103189999999999 Q gi|254780676|r 297 FL----------MVSASPLTRSSYHAGDDFLRLKNN 322 (329) Q Consensus 297 f~----------~V~SgPlVRSSY~A~e~~~~~~~~ 322 (329) +. .-.+|-=.=-+|+|.+....+.++ T Consensus 268 ~de~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L~~~ 303 (304) T 1w5q_A 268 LAESVILESLTAFKRAGADGILTYFAKQAAEQLRRG 303 (304) T ss_dssp SCTTHHHHHHHHHHHHTCSEEEETTHHHHHHHHHC- T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCC T ss_conf 626189999999986499999870499999998567 No 69 >>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} (A:1-120,A:179-348) Probab=51.24 E-value=19 Score=17.28 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=29.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCC--------------------C--CCCCCHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 823579999999970775189850544--------------------5--345325899999999998533586899 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDR--------------------D--DLDDGGAQHFAEVISAIRESAPSTTIE 168 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~R--------------------D--DL~DgGA~hfa~~I~~Ir~~~P~~~IE 168 (329) |-..-..-...++.||..+|-|+.+-. . |=.=|..+.|.+-|++.++..=.+.+. T Consensus 41 ~~~~~~~~l~~l~~lG~~~i~l~P~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~G~~~~~~~lv~~~h~~Gi~vi~D 117 (290) T 2aaa_A 41 SWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVD 117 (290) T ss_dssp CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 89999985899997699889949864177656788988888675567774855599999999999864344589984 No 70 >>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A (A:1-241) Probab=51.24 E-value=19 Score=17.28 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=88.1 Q ss_pred HHHHHHHHHCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCC Q ss_conf 999999970775189850-------54453453258999999999985335868998154623446----8999874107 Q gi|254780676|r 120 NISWAVRSMKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAK 188 (329) Q Consensus 120 rvA~av~~l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~ 188 (329) --|..+.+.|.+.+-++| --.||...-.-.-+...+++|.+..+..-|=+=.++--|+. ..++.++.+| T Consensus 29 ~sA~i~e~~G~~ai~~sg~~~a~~~~g~pd~~~~~~~e~~~~~~~i~~~~~~~PviaD~d~G~G~~~~v~~~v~~l~~aG 108 (241) T 3fa4_A 29 LSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSG 108 (241) T ss_dssp HHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC T ss_conf 99999998699999935899984566999866344899999999876035688657635666887899999999999819 Q ss_pred CHHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCEEEECCCEEEEE-----EECHHHHHHHHHHHHHCC Q ss_conf 02332-----01383000275638970358999999999-97089167014048876-----420688999999999669 Q gi|254780676|r 189 PDVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRV-KELDPLIFTKSGIMLGL-----GETRNEILQLMDDLRTAD 257 (329) Q Consensus 189 pdV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvGL-----GEt~eEi~e~l~DLr~~g 257 (329) .+-+| +.-.++...-+.+.|....-..+..-+.+ +..++++. +++= .+..+|.++-.+-..++| T Consensus 109 aagi~IED~~~~k~~~~~~~~~li~~~~~~~~i~aa~~a~~~~~~d~~-----i~ARTda~~~~~~~eai~Ra~ay~~AG 183 (241) T 3fa4_A 109 VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIV-----VIARTDSLQTHGYEESVARLRAARDAG 183 (241) T ss_dssp CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCE-----EEEEECCHHHHCHHHHHHHHHHHHTTT T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-----EEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 728862356687556666655567899999999999998862599769-----996455333378999999999855458 Q ss_pred CCEEEC Q ss_conf 939975 Q gi|254780676|r 258 VDFLTM 263 (329) Q Consensus 258 vdilTi 263 (329) .|.+-+ T Consensus 184 Ad~i~~ 189 (241) T 3fa4_A 184 ADVGFL 189 (241) T ss_dssp CSEEEE T ss_pred CCCEEE T ss_conf 981674 No 71 >>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} (A:) Probab=49.56 E-value=20 Score=17.10 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=12.2 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 82357999999997077518985054 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVD 139 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~ 139 (329) +..+-...|+.++++|...+.+.... T Consensus 80 s~~~~i~~a~~A~~~Gad~vl~~pP~ 105 (294) T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPY 105 (294) T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCC T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 79999999999997699999988887 No 72 >>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* (A:) Probab=48.93 E-value=7.2 Score=20.24 Aligned_cols=206 Identities=9% Similarity=-0.007 Sum_probs=105.1 Q ss_pred CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHH Q ss_conf 98668999999997498236525788787675089726999866522353522344678998888235-------79999 Q gi|254780676|r 50 VSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQE-------PENIS 122 (329) Q Consensus 50 ~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~E-------P~rvA 122 (329) ..+...++++.+++++|...+-.+ ..+.+. +...++.+ -++.. T Consensus 45 ~~~~~~~i~~~~~~~gl~~~~~~~----------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~i 94 (290) T 2qul_A 45 SDAKKRELKAVADDLGLTVMCCIG----------------------LKSEYD--------FASPDKSVRDAGTEYVKRLL 94 (290) T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEE----------------------ECGGGC--------TTCSCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCEECCC----------------------CCCCCC--------CCCCCHHHHHHHHHHHHHHH T ss_conf 989999999999985997011214----------------------444679--------89989999999999999999 Q ss_pred HHHHHHCCCEEEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCC-------CCEEEEECCCC---CCCHHHHHHHHH- Q ss_conf 9999707751898505445345-----3258999999999985335-------86899815462---344689998741- Q gi|254780676|r 123 WAVRSMKLSHVVITSVDRDDLD-----DGGAQHFAEVISAIRESAP-------STTIEVLTPDF---LRKPHALEKVVS- 186 (329) Q Consensus 123 ~av~~l~Lk~vViTSV~RDDL~-----DgGA~hfa~~I~~Ir~~~P-------~~~IEvLiPDf---~G~~~al~~v~~- 186 (329) +..+.||.+++|+.+....+.. ..-...+.+.++.+++..+ ...+|...+.+ .+..+.+..+++ T Consensus 95 ~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gi~~~iE~~~~~~~~~~~~~~~~~~l~~~ 174 (290) T 2qul_A 95 DDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADA 174 (290) T ss_dssp HHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHHH T ss_pred HHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999589568631443223578887435799999999999998766776253143113576556555878998665542 Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH Q ss_conf 07023320138300027563897035899999999997089167014048876420688999999999669939975022 Q gi|254780676|r 187 AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329) Q Consensus 187 A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329) .+++.+.= .-..+.....+.+. .+.++.....-..+-.|-.-++-+|+-.-+.-+.+..|++.|.+..-+-.| T Consensus 175 ~~~~~~~i----~~D~~h~~~~~~~~---~~~l~~~~~~i~~iHi~D~~~~~~G~G~id~~~i~~~L~~~g~~g~~~lE~ 247 (290) T 2qul_A 175 VDSPACKV----QLDTFHMNIEETSF---RDAILACKGKMGHFHLGEANRLPPGEGRLPWDEIFGALKEIGYDGTIVMEP 247 (290) T ss_dssp HCCTTEEE----EEEHHHHHHHCSCH---HHHHHHTTTTEEEEEECCTTSCCTTSSCSCHHHHHHHHHHTTCCSCEEECC T ss_pred CCCCCCCC----CCCCHHHHHCCCCH---HHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE T ss_conf 16864222----34426888739998---998764157089999624888999997619999999999849974899986 Q ss_pred CCCC-----CCCC---CCCCCCCHHHHHHHHHHH Q ss_conf 2786-----1007---800023846999999999 Q gi|254780676|r 267 LQPT-----RKHH---KVESFVTPQDFKSYETIA 292 (329) Q Consensus 267 L~Ps-----~~h~---pV~ryv~P~eF~~~~~~a 292 (329) -.+. .... .+.+-..+++......-+ T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (290) T 2qul_A 248 FMRKGGSVSRAVGVWRDMSNGATDEEMDERARRS 281 (290) T ss_dssp CCCCSSHHHHHTTCCSCCSTTCCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 8888737778888876402133433799999999 No 73 >>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reaction intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} (A:26-330) Probab=48.33 E-value=21 Score=16.97 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=100.5 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHHHHHCCCCEEEE---ECCCC----C---- Q ss_conf 82357999999997077518985054453453258-------999999999985335868998---15462----3---- Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-------QHFAEVISAIRESAPSTTIEV---LTPDF----L---- 175 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-------~hfa~~I~~Ir~~~P~~~IEv---LiPDf----~---- 175 (329) -.++-.+.++-+..+|++.+.+-.|-.+.++|.-+ +...++|+.||+..|+..|=. |.|=- . T Consensus 32 sid~l~~~~~~~~~~Gi~~v~lFgv~~~~~Kd~~gs~a~~~~g~v~rair~iK~~~p~l~vi~Dvclc~YT~hGHcGil~ 111 (305) T 1pv8_A 32 GVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLS 111 (305) T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC------------ T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC T ss_conf 99999999999998899999997888730358877412472229999999999648981899760457677888635212 Q ss_pred --C---CHHHHHHH-------HHCCCHHHH------------------HCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf --4---46899987-------410702332------------------0138-300027563897035899999999997 Q gi|254780676|r 176 --R---KPHALEKV-------VSAKPDVFN------------------HNLE-TVASNYLMVRPGARYFHSLRLLQRVKE 224 (329) Q Consensus 176 --G---~~~al~~v-------~~A~pdV~n------------------HNiE-TV~rLy~~VRp~a~Y~rSL~vL~~aK~ 224 (329) | |...++.+ .+||.|+++ ++.+ .|+=+.-.+.-.+.|-- =.|.+-. T Consensus 112 ~~g~idND~Tl~~L~~~Als~A~AGADivAPSdMMDGrV~aIR~~Ld~~g~~~~v~ImSYsaKyaS~fYG---PFRdA~~ 188 (305) T 1pv8_A 112 ENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYG---PFRDAAK 188 (305) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGH---HHHHCC- T ss_pred CCEEECCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---HHHHHHC T ss_conf 5212372899999999999999718884421045678999999999977995520232166654056541---4688724 Q ss_pred CCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCC---CCC---CCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 089167014048876420688999999999669939975---02227---861---007800023846999999999974 Q gi|254780676|r 225 LDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQ---PTR---KHHKVESFVTPQDFKSYETIAYSK 295 (329) Q Consensus 225 ~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~---Ps~---~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329) ..|..--|+.--+--+-..|-+.++..|+.+ |.|+|-+ .-||- --+ .++||.-|---.||..++.-|..- T Consensus 189 Sap~~gDrktYQmdpan~~eAlre~~~D~~E-GAD~iMVKPal~YLDIi~~~k~~~~~~Pv~aYqVSGEYaMikaAa~~G 267 (305) T 1pv8_A 189 SSPAFGDRRCYQLPPGARGLALRAVDRDVRE-GADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAG 267 (305) T ss_dssp ------------CCTTCHHHHHHHHHHHHHT-TCSBEEEESCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTT T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC T ss_conf 6766788304435997789999999863754-997788535407899999999747899879997608999999999879 Q ss_pred CCC--E---------EECCCCCCCCHHHHHHHHHH Q ss_conf 962--4---------34048300103189999999 Q gi|254780676|r 296 GFL--M---------VSASPLTRSSYHAGDDFLRL 319 (329) Q Consensus 296 Gf~--~---------V~SgPlVRSSY~A~e~~~~~ 319 (329) -+. . -.+|-=.=-+|+|.+...-+ T Consensus 268 ~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L 302 (305) T 1pv8_A 268 AFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWL 302 (305) T ss_dssp SSCHHHHHHHHHHHHHHHTCSEEEETTHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH T ss_conf 97577799999999986299999870199999987 No 74 >>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} (A:1-40,A:267-370) Probab=48.09 E-value=9.3 Score=19.44 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=39.0 Q ss_pred HHHHHCCCHHHHHCCCCCC--CCCC-CCCC-CCHHHHHHHHHHHH-HHCCCEEEECCCEEEE---EEECHHHHHHHHHHH Q ss_conf 9874107023320138300--0275-6389-70358999999999-9708916701404887---642068899999999 Q gi|254780676|r 182 EKVVSAKPDVFNHNLETVA--SNYL-MVRP-GARYFHSLRLLQRV-KELDPLIFTKSGIMLG---LGETRNEILQLMDDL 253 (329) Q Consensus 182 ~~v~~A~pdV~nHNiETV~--rLy~-~VRp-~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvG---LGEt~eEi~e~l~DL 253 (329) ..+..+|-||+.-|+--.+ ..+. -++. ...|.+..+.+..+ ++.+-.+..=.|.+.- +...+++ .+..-| T Consensus 22 ~~~~~~g~~~~~~~~g~~~aL~~~~~~l~~~~~~~~~rr~~l~~~L~~~gi~~~~p~Gg~flw~~~~~~~~~--~~~~ll 99 (144) T 2z61_A 22 QKLESEGKKVIHLEIGEPDFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGEDGRE--FAYKLL 99 (144) T ss_dssp HHHHHTTCCCEECCCCSCSGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSSCHHH--HHHHHH T ss_pred HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCCHHH--HHHHHH T ss_conf 999966997489999889933331357899999987510245667886594762788038999868999999--999999 Q ss_pred HHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHH Q ss_conf 9669939975022278610078000238469999 Q gi|254780676|r 254 RTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKS 287 (329) Q Consensus 254 r~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~ 287 (329) .+.||-++.=.-|-.+...++-+.=-.+++++++ T Consensus 100 ~e~gV~v~PGs~F~~~~~~~iRl~fa~~~e~i~e 133 (144) T 2z61_A 100 KEKFVALTPGIGFGSKGKNYIRISYANSYENIKE 133 (144) T ss_dssp HHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHH T ss_pred HHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHH T ss_conf 8699999805331889999899997298999999 No 75 >>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} (A:) Probab=48.07 E-value=11 Score=18.95 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=59.0 Q ss_pred CCCCCCHHHHHHH-------HHHHHHHCCCEEEEEC-------------C-CCCCCCCCHH-----HHHHHHHHHHHHHC Q ss_conf 9988882357999-------9999970775189850-------------5-4453453258-----99999999998533 Q gi|254780676|r 109 KPQPLDPQEPENI-------SWAVRSMKLSHVVITS-------------V-DRDDLDDGGA-----QHFAEVISAIRESA 162 (329) Q Consensus 109 ~P~~~D~~EP~rv-------A~av~~l~Lk~vViTS-------------V-~RDDL~DgGA-----~hfa~~I~~Ir~~~ 162 (329) .|.++..+|-..+ |+-.++.|..-|-|-. . .|+|-- ||+ ..-.++|++||+.. T Consensus 147 ~p~~mt~~~I~~i~~~f~~AA~~A~~AGfDgVeih~ahG~Ll~qFlsp~~N~RtDeY-GGs~enR~Rf~~Eii~air~a~ 225 (361) T 3gka_A 147 TPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAY-GGSIENRARLLLEVVDAAIDVW 225 (361) T ss_dssp CCEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTT-SSSHHHHSHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHC T ss_conf 753345656989987556888889862954022311332123302220236644557-8756553467788888777633 Q ss_pred CCCEEEE--ECCCCC----C---CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC Q ss_conf 5868998--154623----4---468999874107023320138300027563897035899999999997089167014 Q gi|254780676|r 163 PSTTIEV--LTPDFL----R---KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKS 233 (329) Q Consensus 163 P~~~IEv--LiPDf~----G---~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKS 233 (329) ++-.|-+ -..|+. . ..+.+..+.+++.|.+.- ...-++.-. .. .....|+... - T Consensus 226 gd~~v~~R~~~~~~~~~g~~~~e~~~~a~~l~~~g~d~i~~----~~~~~~~~~-----~~---~~~~~k~~~~-----~ 288 (361) T 3gka_A 226 SAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAF----LFARESFGG-----DA---IGQQLKAAFG-----G 288 (361) T ss_dssp CGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSE----EEEECCCST-----TC---CHHHHHHHHC-----S T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE----EEEECCCCC-----CC---CHHHHHHCCC-----C T ss_conf 66634554034655234565662999999999857687208----987556676-----53---0011100259-----7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 0488764206889999999996699399750222 Q gi|254780676|r 234 GIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 234 GlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) -+++|-.=+.++.. ..|.+-++|++.+|-.+ T Consensus 289 ~i~~g~~~~~~~a~---~~l~~g~~D~v~~~R~~ 319 (361) T 3gka_A 289 PFIVNENFTLDSAQ---AALDAGQADAVAWGKLF 319 (361) T ss_dssp CEEEESSCCHHHHH---HHHHTTSCSEEEESHHH T ss_pred CEEEECCCCHHHHH---HHHHCCCCCEEHHHHHH T ss_conf 78998998999999---99987997560466999 No 76 >>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300) Probab=47.59 E-value=21 Score=16.89 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=86.4 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC--C----C------------------HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8235799999999707751898505445345--3----2------------------58999999999985335868998 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLD--D----G------------------GAQHFAEVISAIRESAPSTTIEV 169 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~--D----g------------------GA~hfa~~I~~Ir~~~P~~~IEv 169 (329) |.+--.++++++++.|.+.|-.-.-+-|.+. + . +...|....+..++ ..|.+ T Consensus 42 ~~~~a~~~i~~a~~aGadavKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~----~Gi~~ 117 (300) T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQXFQADRXYQKDPGLYKTAAGKDVSIFSLVQSXEXPAEWILPLLDYCRE----KQVIF 117 (300) T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHH----TTCEE T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC----CCCEE T ss_conf 29999999999998098999911506787078863424567788864310222102103455555444321----34301 Q ss_pred ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH Q ss_conf 15462344689998741070233201383000275638970358999999999970891670140488764206889999 Q gi|254780676|r 170 LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL 249 (329) Q Consensus 170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~ 249 (329) ++.=| +.++++.+.+.++++|- |- +.=-..+.+|+.+.+.+.-+.-++|+ =|.+|+..+ T Consensus 118 ~st~f--d~~~vd~l~~~~v~~~K------------I~--S~~~~n~~LL~~~A~tgkPvilstG~-----~t~~ei~~A 176 (300) T 1vli_A 118 LSTVC--DEGSADLLQSTSPSAFK------------IA--SYEINHLPLLKYVARLNRPXIFSTAG-----AEISDVHEA 176 (300) T ss_dssp ECBCC--SHHHHHHHHTTCCSCEE------------EC--GGGTTCHHHHHHHHTTCSCEEEECTT-----CCHHHHHHH T ss_pred EECCC--CHHHHHHHCCCCCCCEE------------CC--CCCCCCHHHHHHHHHCCCCCEEECCH-----HHHHHHHHH T ss_conf 10122--02444310121221112------------03--32334469999998608961021103-----345667889 Q ss_pred HHHHHHCCCCEEECCHHCC Q ss_conf 9999966993997502227 Q gi|254780676|r 250 MDDLRTADVDFLTMGQYLQ 268 (329) Q Consensus 250 l~DLr~~gvdilTiGQYL~ 268 (329) +.-+++.|.+-|.|-+=-. T Consensus 177 v~~~~~~Gn~~l~Llhc~s 195 (300) T 1vli_A 177 WRTIRAEGNNQIAIXHCVA 195 (300) T ss_dssp HHHHHTTTCCCEEEEEECS T ss_pred HHHHHHHCCCCEEEEEECC T ss_conf 9888763156579986025 No 77 >>2h8z_A Xenobiotic reductase A; beta-alpha barrel, oxidoreductase; HET: FMN 8CM; 1.42A {Pseudomonas putida} PDB: 2h90_A* 2h8x_A* (A:1-104,A:149-359) Probab=47.16 E-value=22 Score=16.85 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=83.4 Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECC----CCC----CCHHHHHHHHHCCCHHHHHCCCC------CCCCCCCCCC-- Q ss_conf 3258999999999985335868998154----623----44689998741070233201383------0002756389-- Q gi|254780676|r 145 DGGAQHFAEVISAIRESAPSTTIEVLTP----DFL----RKPHALEKVVSAKPDVFNHNLET------VASNYLMVRP-- 208 (329) Q Consensus 145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiP----Df~----G~~~al~~v~~A~pdV~nHNiET------V~rLy~~VRp-- 208 (329) |.-+..|.+++.+|++..--+-+.+--+ ++. .-.++.+.+.++|.|.+.=|.-- --.=+..+|. T Consensus 75 ~~~~~~~~~~~~~vh~~g~~~~~Ql~h~Gr~~eI~~~~~~f~~aA~~a~~aGfDgIein~a~gyl~~qf~cP~~n~r~~~ 154 (315) T 2h8z_A 75 DAHAQAFVPVVQAIKAAGSVPGIQIAHAGRLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDA 154 (315) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECCGGHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCST T ss_pred HHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 23415788999998762240021012077699999999999999889998296702313455520024430247655554 Q ss_pred -CCHHHHH----HHHHHHHHHC-CCEEEECCCEEEE-----EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCC Q ss_conf -7035899----9999999970-8916701404887-----642068899999999966993997502227861007800 Q gi|254780676|r 209 -GARYFHS----LRLLQRVKEL-DPLIFTKSGIMLG-----LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVE 277 (329) Q Consensus 209 -~a~Y~rS----L~vL~~aK~~-~~~i~TKSGlMvG-----LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ 277 (329) +++..+. +++++.+++. ++.+..|..+-+. -+.+.|+..+.+.-|.+.|+|.|++..-..-.... T Consensus 155 ~G~~l~~r~~~~~eii~~ir~~~g~~~~v~~R~~~~d~~~~~~~~~e~~~~~a~~l~~~G~d~i~v~~~~~~~~~~---- 230 (315) T 2h8z_A 155 YGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTN---- 230 (315) T ss_dssp TSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCCSSCCC---- T ss_pred CCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC---- T ss_conf 5677432114566666632430321255543467322355567744678888899986597547753013116744---- Q ss_pred CCCCHH-HHHHHHHHHHHCCCCEEECCCCCCCCHHH Q ss_conf 023846-99999999997496243404830010318 Q gi|254780676|r 278 SFVTPQ-DFKSYETIAYSKGFLMVSASPLTRSSYHA 312 (329) Q Consensus 278 ryv~P~-eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A 312 (329) .+..+. ..+..+.+....+...+..|= ++|--.| T Consensus 231 ~~~~~~~~~~~~~~ir~~~~ipvi~~Gg-I~s~e~a 265 (315) T 2h8z_A 231 IPWGPAFMGPIAERVRREAKLPVTSAWG-FGTPQLA 265 (315) T ss_dssp CCCCTTTTHHHHHHHHHHHTCCEEECSS-TTSHHHH T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCHHHH T ss_conf 3347431068999999874960899768-6999999 No 78 >>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* (A:) Probab=46.85 E-value=13 Score=18.38 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=35.1 Q ss_pred CCCCCHHHHH----HHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHHHCCCC Q ss_conf 3453258999----999999985335868998154623-44689998741070233201383 Q gi|254780676|r 142 DLDDGGAQHF----AEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFNHNLET 198 (329) Q Consensus 142 DL~DgGA~hf----a~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~nHNiET 198 (329) |.-|+|...+ .+.|+.+|+.++.+.+-.=+-|+- .....++...++|.|.+.=|.+. T Consensus 31 d~~k~g~~~~~~~G~~~i~~l~~~~~~i~~d~k~~di~~t~~~~~~~~~~~gaD~vtvh~~~ 92 (246) T 2yyu_A 31 LFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAG 92 (246) T ss_dssp CEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGG T ss_pred EEEEECHHHHHHHCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 19998989985109899999986288565211003657689999987622675078872355 No 79 >>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351) Probab=46.73 E-value=20 Score=17.10 Aligned_cols=215 Identities=13% Similarity=-0.022 Sum_probs=99.3 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf 89999999974982365257887876750897269998665223535223446789988882357999999997077518 Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHV 133 (329) Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~v 133 (329) -.+.-+++++.+...|+--|+|=+-.-.|...+. .++.+.+ +...|=-..+++|+++-|||.. T Consensus 80 ~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~~-------------~~~~~~~----~~~rDiv~el~~A~rk~Glk~g 142 (351) T 2wvv_A 80 AKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-------------KYTVANT----PYKRDILGELVKAYNDEGIDVH 142 (351) T ss_dssp HHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTC-------------SCBGGGS----TTCSCHHHHHHHHHHHTTCEEE T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC-------------CCCCCCC----CCCCCHHHHHHHHHHHCCCCCC T ss_conf 9999999998499679976662378534478999-------------9855467----8876648999999986598652 Q ss_pred EEECCCCCCCCCCH-----------HHHH-HHHHHHHHHHCCCC-EEEEECCCCCCC----------HHHHHHHHHCCCH Q ss_conf 98505445345325-----------8999-99999998533586-899815462344----------6899987410702 Q gi|254780676|r 134 VITSVDRDDLDDGG-----------AQHF-AEVISAIRESAPST-TIEVLTPDFLRK----------PHALEKVVSAKPD 190 (329) Q Consensus 134 ViTSV~RDDL~DgG-----------A~hf-a~~I~~Ir~~~P~~-~IEvLiPDf~G~----------~~al~~v~~A~pd 190 (329) +=.|.--=--||.+ -.-| .-...+|++..-.- .|..+--|.... ....+.+..-.|+ T Consensus 143 ~Y~S~~dw~~p~~~~~~~~~~~~~~~~~y~~~~~~ql~El~~~Yg~id~~W~Dg~~~~~~~~~~~~~~~~~~~i~~~~p~ 222 (351) T 2wvv_A 143 FYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPG 222 (351) T ss_dssp EEEESCCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCSHHHHHTHHHHHHHHHHHHHHSTT T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 89834322475556676776666321666655577777886438950301126766766553114567899988976898 Q ss_pred HHHHCCCCC-CCCC----------CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCE-EEEEE----E------CHHHHHH Q ss_conf 332013830-0027----------56389703589999999999708916701404-88764----2------0688999 Q gi|254780676|r 191 VFNHNLETV-ASNY----------LMVRPGARYFHSLRLLQRVKELDPLIFTKSGI-MLGLG----E------TRNEILQ 248 (329) Q Consensus 191 V~nHNiETV-~rLy----------~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGl-MvGLG----E------t~eEi~e 248 (329) +...|-... ++-. ....+..++.. .+.....+.....--+...+ +-|=| + |.+||+. T Consensus 223 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~we~~~ti~~~~Wgy~~~~~~~~~ks~~~li~ 301 (351) T 2wvv_A 223 VAINSRLRADDKGKRHFDSNGRLMGDYESGYERRL-PDPVKDLKVTQWDWEACMTIPENQWGYHKDWSLSYVKTPIEVID 301 (351) T ss_dssp CEEBGGGCBCTTSCBSBCTTSCBCSSBBCCCBSCC-CCTTTCGGGGGSCBEEEECSBSSCCSCCSCGGGSCBCCHHHHHH T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 69940021156674234677764577777644456-66566676678886023462689754476888334689999999 Q ss_pred HHHHHHHCCCCE-EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 999999669939-97502227861007800023846999999999974 Q gi|254780676|r 249 LMDDLRTADVDF-LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSK 295 (329) Q Consensus 249 ~l~DLr~~gvdi-lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~ 295 (329) .+-+....|..+ |.|| |.+.- =+++.+-+.++++|.-| T Consensus 302 ~l~~~v~~~gnlLLNvg----P~~dG-----~i~~~~~~~L~~~g~wl 340 (351) T 2wvv_A 302 RIVHAVSMGGNMVVNFG----PQADG-----DFRPEEKAMATAIGKWM 340 (351) T ss_dssp HHHHHHHTTCEEEEEEC----CCTTS-----SCCHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEECC----CCCCC-----CCCHHHHHHHHHHHHHH T ss_conf 99997368945999628----78688-----68889999999999999 No 80 >>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} (A:) Probab=46.19 E-value=22 Score=16.75 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=10.3 Q ss_pred CCHHHHHHHHHHHHHCCCCE Q ss_conf 38469999999999749624 Q gi|254780676|r 280 VTPQDFKSYETIAYSKGFLM 299 (329) Q Consensus 280 v~P~eF~~~~~~a~~~Gf~~ 299 (329) -+|++|.++-..-.+.|... T Consensus 276 ~~p~~~a~~~~~~~~~Gv~i 295 (406) T 1lt8_A 276 ATRWDIQKYAREAYNLGVRY 295 (406) T ss_dssp CCHHHHHHHHHHHHHHTEEE T ss_pred CCHHHHHHHHHHHHHCCCCE T ss_conf 58899999999999809998 No 81 >>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375) Probab=45.99 E-value=22 Score=16.73 Aligned_cols=119 Identities=14% Similarity=0.030 Sum_probs=80.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHH Q ss_conf 2357999999997077518985054453453258999999999985335868998154623-446899987410702332 Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFN 193 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~n 193 (329) ..+-.-+|+.+.+.|.+-+.|-..| -+.|.+.....-+.+++..-.+.-++..|--. --...+..+.+++||++- T Consensus 3 ~~qa~~~a~~l~~~g~k~Vaii~~D----~ayG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~tDfss~l~~i~~s~advVi 78 (191) T 3i09_A 3 XALAKGTGSAVVKQGGKTWFFLTAD----YAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILG 78 (191) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEE T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC----CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEE T ss_conf 9999999999875137789995168----718789999999988744964888896067565413799887625998899 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHH Q ss_conf 0138300027563897035899999999997089167014048876420688999999999 Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLR 254 (329) Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr 254 (329) . .........+++.+++.|. +...++.+.+=+.+++.....+.. T Consensus 79 l--------------~~~g~d~~~~ikqa~e~Gl---~~~~~~~~~~~~~~~v~~~g~~aa 122 (191) T 3i09_A 79 L--------------ANAGGDTVNAIKAAKEFGI---TKTXKLAALLXFINDVHALGLETT 122 (191) T ss_dssp E--------------ECCHHHHHHHHHHHHHTTG---GGTCEEEESSCCHHHHHHHCHHHH T ss_pred E--------------ECCCCHHHHHHHHHHHCCC---CCCEEEEEECCCHHHHHHHHHHHH T ss_conf 9--------------0577068999999998098---876599970365588886413531 No 82 >>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:1-115,A:211-383) Probab=45.73 E-value=23 Score=16.70 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=19.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCC Q ss_conf 5445345325899999999998533---58689981546234 Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESA---PSTTIEVLTPDFLR 176 (329) Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~---P~~~IEvLiPDf~G 176 (329) |.|=++..|...-+.++|+.||+.+ .+..|-++. |.+| T Consensus 74 v~R~N~sh~~~~~~~~~i~~ir~~~~~~~~~~i~i~~-D~~G 114 (288) T 3khd_A 74 ICRFNFSHGSHEDHKEMFNNVLKAQELRPNCLLGMLL-DTKG 114 (288) T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHHHHCSSCCCEEEE-ECCC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCC T ss_conf 9999899999999999999999998745899348999-7889 No 83 >>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} (A:1-64) Probab=45.73 E-value=5.7 Score=20.92 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.8 Q ss_pred CCCCCCHHHHHHHHHHHHH---CC-------CCEEECCCCCCCCHHHHHHHHH Q ss_conf 0002384699999999997---49-------6243404830010318999999 Q gi|254780676|r 276 VESFVTPQDFKSYETIAYS---KG-------FLMVSASPLTRSSYHAGDDFLR 318 (329) Q Consensus 276 V~ryv~P~eF~~~~~~a~~---~G-------f~~V~SgPlVRSSY~A~e~~~~ 318 (329) +..+++|+++..+++.=.+ .| |.+..+ ||||+|.++...-- T Consensus 5 l~~~v~~eeL~~le~qY~~E~~~g~vs~qTqFnYAw~--LIkS~~~~d~~~Gi 55 (64) T 1pc2_A 5 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC--LVRSKYNDDIRKGI 55 (64) T ss_dssp CSCSCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--HHTCSSHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--HHHCCCHHHHHHHH T ss_conf 8724589999999999999871099999999999999--98758777899999 No 84 >>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287) Probab=44.62 E-value=24 Score=16.58 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 99999999853358689981546234 Q gi|254780676|r 151 FAEVISAIRESAPSTTIEVLTPDFLR 176 (329) Q Consensus 151 fa~~I~~Ir~~~P~~~IEvLiPDf~G 176 (329) ..++|+..|+. +..|-+|+.|... T Consensus 46 a~e~I~~Lr~~--Gi~v~ilTGD~~~ 69 (165) T 3a1c_A 46 AKPAVQELKRM--GIKVGMITGDNWR 69 (165) T ss_dssp HHHHHHHHHHT--TCEEEEECSSCHH T ss_pred HHHHHHHHHHC--CCCEEEECCCCHH T ss_conf 99999999876--9978997589779 No 85 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=44.19 E-value=24 Score=16.54 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=56.3 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHCC--CHHHHHCCCCCCCC---CCCCCCC Q ss_conf 50544534532589999999999853358689981-546234468999874107--02332013830002---7563897 Q gi|254780676|r 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVL-TPDFLRKPHALEKVVSAK--PDVFNHNLETVASN---YLMVRPG 209 (329) Q Consensus 136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvL-iPDf~G~~~al~~v~~A~--pdV~nHNiETV~rL---y~~VRp~ 209 (329) +...-++-.......|.+.|.+..+.+|+++|++- +|+...-.+.+...+.++ ||||-=+-..+... -..+.|- T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~f~ke~p~IkV~~~~~~~~~~~~~kl~~~~asG~~PDIi~~~~~~~~~~~~~~G~l~dL 123 (185) T 2w7y_A 44 HGYHHSEDEWPVAKTXRDLYDKFAEEHKDSGVEFKPTPVNGDLKDIXNNKVASGEFPDVIDLAGNAVSLAAIEQKLVLDL 123 (185) T ss_dssp ESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEEEECSSCHHHHHHHHHTTTCCCSEEECTTCCCCHHHHHTTCBCCC T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCH T ss_conf 94368776316899999999999998869379999815806999999999977999829996873899999978984424 Q ss_pred CHHHHH----HHHHHHHHHCCCEE Q ss_conf 035899----99999999708916 Q gi|254780676|r 210 ARYFHS----LRLLQRVKELDPLI 229 (329) Q Consensus 210 a~Y~rS----L~vL~~aK~~~~~i 229 (329) .+|-.. =.++...+-.|..| T Consensus 124 ~d~id~d~~~~~~~~~~~~d~~~~ 147 (185) T 2w7y_A 124 KPYIDSNKLEKNVGLNYKQNGGGI 147 (185) T ss_dssp HHHHHHTTCHHHHTTHHHHTCCCE T ss_pred HHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 765433233343588997356415 No 86 >>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} (A:1-87,A:148-337) Probab=43.74 E-value=24 Score=16.49 Aligned_cols=115 Identities=13% Similarity=0.204 Sum_probs=59.4 Q ss_pred CCCCEEEEECCCCCCCH-HHHHHHHHCCCHH------HHHCCCC------CCCCCCCCCC-CCHHHHHHHHHHHHHHCCC Q ss_conf 35868998154623446-8999874107023------3201383------0002756389-7035899999999997089 Q gi|254780676|r 162 APSTTIEVLTPDFLRKP-HALEKVVSAKPDV------FNHNLET------VASNYLMVRP-GARYFHSLRLLQRVKELDP 227 (329) Q Consensus 162 ~P~~~IEvLiPDf~G~~-~al~~v~~A~pdV------~nHNiET------V~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~ 227 (329) .|++.+|.-.-||+|-. +.|+-+.+.|.+. +.+.-.. +..+| .|-| -.+-+.=.++++.+++.|- T Consensus 1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~i~~~p~~~~~~~~~~~gy~~~~~~-~~~~~~g~~~~~~~l~~~~h~~gi 79 (277) T 1g94_A 1 TPTTFVHLFEWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGV 79 (277) T ss_dssp CCCCEEEETTCCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTC T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC-EECCCCCCHHHHHHHHHHHHHCCC T ss_conf 9876998777847999999999999809988995988458999988678878787-658889999999999999998899 Q ss_pred EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 167014048876420688999999999669939975022278610078000238469999999 Q gi|254780676|r 228 LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYET 290 (329) Q Consensus 228 ~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~ 290 (329) ++. .-+..-=-+..+++++.++.+.+.|||=+-+ .+.+++.++.+..+.. T Consensus 80 ~v~--~D~v~~Np~Vr~~l~~~~r~Wld~GVDGfR~-----------Daa~~~~~~~~~~~~~ 129 (277) T 1g94_A 80 DIY--VDTLIASNYVQNTIAAYINDLQAIGVKGFRF-----------DASKHVAASDIQSLMA 129 (277) T ss_dssp EEE--EEEECTSHHHHHHHHHHHHHHHHHTCCEEEE-----------ETGGGSCHHHHHHHHH T ss_pred EEE--EEECCCCHHHHHHHHHHHHHHHHHCCCEEEC-----------CCCCCCCHHHHHHHHH T ss_conf 999--9981599899999999999999829982521-----------4401179999999997 No 87 >>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:1-88,D:187-359) Probab=43.61 E-value=24 Score=16.48 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=28.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCC--------HHHHHHHHHCCCHHHH Q ss_conf 54453453258999999999985335868998-15462344--------6899987410702332 Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRK--------PHALEKVVSAKPDVFN 193 (329) Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~--------~~al~~v~~A~pdV~n 193 (329) |.|=++..|...-+.++|+.||+........+ +.-|.+|- .+.+...+..|.|-+. T Consensus 48 ~~r~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~i~~d~~Gplp~it~~D~~~i~~a~~~G~dgi~ 112 (261) T 3hqn_D 48 VARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPLPAVSAKDRVDLQFGVEQGVDMIF 112 (261) T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCCSSCHHHHHHHHHHHHTTCSEEE T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 99998899999999999999999999859986999979998899998999999999865999999 No 88 >>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Probab=43.30 E-value=25 Score=16.45 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=11.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 8235799999999707751898505 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSV 138 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV 138 (329) +..|-...|+.++.+|..-++|... T Consensus 81 ~~~~~i~~a~~a~~~Ga~~vli~~P 105 (291) T 3bi8_A 81 NTAASIAMSKWAESIGVDGLLVITP 105 (291) T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC T ss_pred HHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 7899999999999718997999498 No 89 >>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:) Probab=42.85 E-value=5.9 Score=20.81 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=51.9 Q ss_pred EEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHCCC----CEEECCCCCCC Q ss_conf 88764206889999999996699399750222786100780---002384699999999997496----24340483001 Q gi|254780676|r 236 MLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV---ESFVTPQDFKSYETIAYSKGF----LMVSASPLTRS 308 (329) Q Consensus 236 MvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV---~ryv~P~eF~~~~~~a~~~Gf----~~V~SgPlVRS 308 (329) +.=++++.+++-++..+|+..+ ||.||.|+...+.| ..|++|.+|..-.--+.-.|- +++.-=|++|| T Consensus 76 ~w~~~~~~~~lq~~~~~l~~t~-----lg~~l~~~~s~~svt~~s~Y~~~~e~~~~~~~~~l~~~~p~~~y~~~YPm~Ks 150 (249) T 1vdh_A 76 FLNLRPGLDPLLEAEARLSRSA-----FARYLGRSYSFYSVVELGSQEKPLDPESPYVKPRLTPRVPKSGYVCFYPMNKR 150 (249) T ss_dssp EEEEESSHHHHHHHHHHHHHSS-----GGGGEEEEEEEEEEEEEEESSSCCCTTCTTTGGGGSCCCCSSSEEEEEEEEEC T ss_pred EEEECCCHHHHHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEECC T ss_conf 9987899999999999998523-----42324444235764003344688654433225551787889877999853205 No 90 >>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217) Probab=42.30 E-value=25 Score=16.34 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=59.5 Q ss_pred CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHH Q ss_conf 23446899987410702332013830002756389703589999999999708916701404887642068899999999 Q gi|254780676|r 174 FLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDL 253 (329) Q Consensus 174 f~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DL 253 (329) +.+....++.++++|.+-+-=+--|-|-.+ -+-+...++++.+.+...+ +.-++-+.+.+-++.++..+.. T Consensus 32 ~~~~~~~i~~~~~~Gv~gi~v~G~tGE~~~------Lt~~Er~~~i~~~~~~~~~---~~~i~g~~~~~t~~~i~~a~~a 102 (217) T 3e96_A 32 WHHYKETVDRIVDNGIDVIVPCGNTSEFYA------LSLEEAKEEVRRTVEYVHG---RALVVAGIGYATSTAIELGNAA 102 (217) T ss_dssp HHHHHHHHHHHHTTTCCEECTTSGGGTGGG------SCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHH------CCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHH T ss_conf 999999999999769999996845666213------7999999999999998299---7327414433124677777777 Q ss_pred HHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 96699399750--222786100780002384699999999997496 Q gi|254780676|r 254 RTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETIAYSKGF 297 (329) Q Consensus 254 r~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf 297 (329) .++|+|-+-+. .|..|+.. +-++.|++++...+. T Consensus 103 ~~~Ga~~~lv~~P~~~~~~~~----------~i~~~~~~i~~~~~~ 138 (217) T 3e96_A 103 KAAGADAVMIHMPIHPYVTAG----------GVYAYFRDIIEALDF 138 (217) T ss_dssp HHHTCSEEEECCCCCSCCCHH----------HHHHHHHHHHHHHTS T ss_pred HHCCCCCCCCCCCCCCCCCHH----------HHHHHHHHHHHHHCC T ss_conf 641443123568742321067----------778899988765224 No 91 >>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} (A:) Probab=42.26 E-value=24 Score=16.46 Aligned_cols=179 Identities=8% Similarity=-0.058 Sum_probs=72.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC Q ss_conf 35799999999707751898505445345325899999999998533586899815462344689998741070233201 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN 195 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN 195 (329) ..|..+++++++.|+..++||--+.-+-.+--..+... .-.+..++..|.++...-...... ...+........++ T Consensus 18 ~~~e~~~~~A~~~G~~~i~iTDH~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~G~e~~~~~~-~~~~~~~~~~~~~~ 93 (245) T 1m65_A 18 STLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFIN---MRIWPRVVDGVGILRGIEANIKNV-DGEIDCSGKMFDSL 93 (245) T ss_dssp CCHHHHHHHHHHHTCCEEEEEEECTTSTTCCCTHHHHG---GGGSCSEETTEEEEEEEEEEBCST-TCCBSCCHHHHHHC T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHHHHHCCEEEEECCCCCCCCC-HHHHHHHHHHCCCC T ss_conf 87999999999879999999389876450268999999---888899747848985564443543-03455566540455 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC Q ss_conf 3830002756389703589999999999708-916701404887642068899999999966993997502227861007 Q gi|254780676|r 196 LETVASNYLMVRPGARYFHSLRLLQRVKELD-PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHH 274 (329) Q Consensus 196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~-~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~ 274 (329) ....-.+....+....+.+-...+......+ ..+................ .-.........++...+.+-.... T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (245) T 1m65_A 94 DLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAV--AEAAAKHQVALEINNSSFLHSRKG--- 168 (245) T ss_dssp SEEEEECCTTTSCCCCHHHHHHHHHHHHHTSCCSEECCTTCTTSCCCHHHH--HHHHHHHTCEEEEETTC---------- T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH--HHHHHHHCCEEEEECCCCCCCCCC--- T ss_conf 517886401224665499999999999977998685253520134557999--999997285467622433456677--- Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC Q ss_conf 80002384699999999997496243404830010 Q gi|254780676|r 275 KVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS 309 (329) Q Consensus 275 pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS 309 (329) ......++.+.+.+.|...|.+.|.-... T Consensus 169 ------~~~~~~~~~~~~~~~g~~~v~~sD~H~~~ 197 (245) T 1m65_A 169 ------SEDNCREVAAAVRDAGGWVALGSDSHTAF 197 (245) T ss_dssp ---------CHHHHHHHHHHHTCCEEEECCBSSGG T ss_pred ------CCCHHHHHHHHHHHCCCCEEEECCCCCHH T ss_conf ------76569999999998699599989989955 No 92 >>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:1-71,A:168-339) Probab=42.16 E-value=26 Score=16.33 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=86.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCCC--------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCC Q ss_conf 05445345325899999999998533586--89981546234--------468999874107023320138300027563 Q gi|254780676|r 137 SVDRDDLDDGGAQHFAEVISAIRESAPST--TIEVLTPDFLR--------KPHALEKVVSAKPDVFNHNLETVASNYLMV 206 (329) Q Consensus 137 SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~--~IEvLiPDf~G--------~~~al~~v~~A~pdV~nHNiETV~rLy~~V 206 (329) .|.|=++..|...-+.++|+.||+..... .|-++ -|.+| +.+.++.-++.+.|.+.. +-| T Consensus 30 ~v~RlN~SHg~~e~h~~~i~~iR~~~~~~~~~i~Il-~Dl~GPlp~LTekD~~di~~a~~~~vD~ial---------SfV 99 (243) T 2e28_A 30 NVARLNFSHGDHEEHGRRIANIREAAKRTGRTVAIL-LDTKGPLPGITEKDRADILFGIRQGIDFIAA---------SFV 99 (243) T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHHHHTTCCCEEE-EECCCCCCSCCHHHHHHHHHHHHHTCSEEEE---------SSC T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCCCCCHHHHHHHHHHHHCCCCEEEE---------CCC T ss_conf 999997999999999999999999999719980799-9689986222156799988776508886751---------354 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEC-----------------CCEEEEEEEC-----HHHH----HHHHHHHHHCCCCE Q ss_conf 89703589999999999708916701-----------------4048876420-----6889----99999999669939 Q gi|254780676|r 207 RPGARYFHSLRLLQRVKELDPLIFTK-----------------SGIMLGLGET-----RNEI----LQLMDDLRTADVDF 260 (329) Q Consensus 207 Rp~a~Y~rSL~vL~~aK~~~~~i~TK-----------------SGlMvGLGEt-----~eEi----~e~l~DLr~~gvdi 260 (329) |...+-..=-++|+.....++.+..| -|+|++=|.= .+++ ...+.--+..|.-+ T Consensus 100 r~a~di~~vr~~l~~~~~~~~~IiaKIE~~~ai~nl~eIi~~sDgimIaRGDLgve~~~e~v~~~Qk~ii~~c~~~~kpv 179 (243) T 2e28_A 100 RRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGLMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPV 179 (243) T ss_dssp CSHHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCE T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 87335788987655411445561023404566651477876464799965651210698899999999999988529839 Q ss_pred EECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEEC Q ss_conf 975022278-61007800023846999999999--9749624340 Q gi|254780676|r 261 LTMGQYLQP-TRKHHKVESFVTPQDFKSYETIA--YSKGFLMVSA 302 (329) Q Consensus 261 lTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a--~~~Gf~~V~S 302 (329) ++-+|+|-- .....| ...+.-.+| ..-|+..+.= T Consensus 180 I~ATq~LeSM~~~~~P--------TRAEv~Dvanav~dGaD~imL 216 (243) T 2e28_A 180 ITATQMLDSMQRNPRP--------TRAEASDVANAIFDGTDAVML 216 (243) T ss_dssp EEESSSSGGGGTCSSC--------CHHHHHHHHHHHHHTCSEEEE T ss_pred EEEHHHHHHHHHCCCC--------CCHHHHHHHHHHHHCCCEEEE T ss_conf 9858976667508999--------744468999999727825887 No 93 >>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236) Probab=42.09 E-value=26 Score=16.32 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=12.9 Q ss_pred EEEEEEE-CHHHHHHHHHHHHHCCCCEEEC Q ss_conf 4887642-0688999999999669939975 Q gi|254780676|r 235 IMLGLGE-TRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 235 lMvGLGE-t~eEi~e~l~DLr~~gvdilTi 263 (329) +|+|.|. +-+|.++..+...++|+|.+-+ T Consensus 72 ii~gv~~~s~~~~i~~a~~a~~~G~d~v~v 101 (236) T 2vc6_A 72 VIAGAGSNSTAEAIAFVRHAQNAGADGVLI 101 (236) T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 897468740689999999999769999998 No 94 >>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} (A:) Probab=41.97 E-value=2.2 Score=23.89 Aligned_cols=136 Identities=14% Similarity=0.169 Sum_probs=82.6 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH Q ss_conf 88235799999999707751898505445345325899999999998533586899815462344689998741070233 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~ 192 (329) .+...|..+|+++...|..+++++.- .-...|.......++.+.... .+.++..+.....+....+.+++.+.+ T Consensus 30 ~~~~~~~~~a~~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~i 103 (253) T 1h5y_A 30 REVGDPVEMAVRYEEEGADEIAILDI---TAAPEGRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKV 103 (253) T ss_dssp HEEECHHHHHHHHHHTTCSCEEEEEC---CCCTTTHHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEE T ss_pred EECCCHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHCC---CCCEEEECCEEECCCCHHHHHCCCCEE T ss_conf 88889999999999879998999826---562125750489999997315---987698343466010013444376510 Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE----------CCCEEEEEEECHHHHHHHHHHHHHCCCCEEE Q ss_conf 201383000275638970358999999999970891670----------1404887642068899999999966993997 Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT----------KSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T----------KSGlMvGLGEt~eEi~e~l~DLr~~gvdilT 262 (329) +=|..+.....-. ..+..+....+.+.. +--...|.........+....+.+.|++.++ T Consensus 104 ~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~i~ 172 (253) T 1h5y_A 104 SVNTAAVRNPQLV-----------ALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEIL 172 (253) T ss_dssp EESHHHHHCTHHH-----------HHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEE T ss_pred ECCCEEEECCHHH-----------HHHHHCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 1433257560465-----------66764359841999999998189459999688434797799999999847998899 Q ss_pred CCH Q ss_conf 502 Q gi|254780676|r 263 MGQ 265 (329) Q Consensus 263 iGQ 265 (329) ++. T Consensus 173 ~~~ 175 (253) T 1h5y_A 173 LTS 175 (253) T ss_dssp EEE T ss_pred EEE T ss_conf 986 No 95 >>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A (A:) Probab=41.79 E-value=26 Score=16.29 Aligned_cols=142 Identities=9% Similarity=0.028 Sum_probs=56.6 Q ss_pred HHHHHHHHCCCEEEEEC----CC---CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCCC Q ss_conf 99999970775189850----54---453453258999999999985335868998154623446----89998741070 Q gi|254780676|r 121 ISWAVRSMKLSHVVITS----VD---RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAKP 189 (329) Q Consensus 121 vA~av~~l~Lk~vViTS----V~---RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~p 189 (329) -|..+.+.|.+-+.++| .. .||..--.-......++.|....+--.|==+--.|-|+. ..++.+.++|. T Consensus 29 sAri~~~aG~~ai~~sg~~~a~~~~g~pd~~~~~~~e~~~~~~~i~~a~~~PiiaD~d~G~~g~~~~v~~~v~~l~~aGa 108 (295) T 1xg4_A 29 HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGA 108 (295) T ss_dssp HHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTC T ss_pred HHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 99999983999996508999987379998775762466788887753046770133112234312389999999996799 Q ss_pred HHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC Q ss_conf 2332-----0138300027563897035899999999997089167014048876420688999999999669939975 Q gi|254780676|r 190 DVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 190 dV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329) +-++ +.-.++..+.+.+.|....-..+..-..++ .++++..+.=-=.-.++..+|.++-..-+.++|+|.+-| T Consensus 109 ~gv~iED~~~~k~~~~~~~~~~i~~~~~~~ki~aa~~a~-~~~~~~i~ARtda~~~~~~~eai~Ra~ay~~AGAd~i~i 186 (295) T 1xg4_A 109 AGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAK-TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFP 186 (295) T ss_dssp SEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHC-SSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEE T ss_pred CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 688731653544445566533217999999999999715-898723476345533068899999999887569968984 No 96 >>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} (A:) Probab=41.52 E-value=26 Score=16.26 Aligned_cols=167 Identities=15% Similarity=0.064 Sum_probs=105.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234468999874107023 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV 191 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV 191 (329) ..|+++..+.++++...|++++.|.--+ + +|.+.++.+++..|.+.+-. ++.-..+.+....+++.+. T Consensus 21 ~~~~~~~~~~~~~~~~~G~~~i~l~~~~------~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 88 (217) T 3lab_A 21 IDDLVHAIPXAKALVAGGVHLLEVTLRT------E---AGLAAISAIKKAVPEAIVGA---GTVCTADDFQKAIDAGAQF 88 (217) T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEETTS------T---THHHHHHHHHHHCTTSEEEE---ECCCSHHHHHHHHHHTCSE T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC------C---HHHHHHHHHHHHCCCCEEEE---EECCCHHHHHHHHHHCCCE T ss_conf 8999999999999998799889996899------0---49999999998689973989---9724368999999748999 Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC Q ss_conf 32013830002756389703589999999999708916701404887642068899999999966993997502227861 Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR 271 (329) Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~ 271 (329) +-|--++ ...++..+..+..+ . ..++.+.---|.+|+... ...|++.+-+|+.-..+. T Consensus 89 i~~~~~~--------------~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~e~~~a----~~~g~~~~~~~~~~~~~~ 146 (217) T 3lab_A 89 IVSPGLT--------------PELIEKAKQVKLDG--Q--WQGVFLPGVATASEVXIA----AQAGITQLKCFPASAIGG 146 (217) T ss_dssp EEESSCC--------------HHHHHHHHHHHHHC--S--CCCEEEEEECSHHHHHHH----HHTTCCEEEETTTTTTTH T ss_pred EECCCCC--------------HHHHHHHHHCCCCC--C--CCCCCCCCCCCHHHHHHH----HHCCCCEEEECCHHHCCC T ss_conf 9989999--------------99999999839984--3--355453785988999999----987999799650431378 Q ss_pred C-----------CCC--CCCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCCHHHHHHH Q ss_conf 0-----------078--0002384699999999997496243404-8300103189999 Q gi|254780676|r 272 K-----------HHK--VESFVTPQDFKSYETIAYSKGFLMVSAS-PLTRSSYHAGDDF 316 (329) Q Consensus 272 ~-----------h~p--V~ryv~P~eF~~~~~~a~~~Gf~~V~Sg-PlVRSSY~A~e~~ 316 (329) . +.| +.--++|+...++. +.|...|..| -++++.+-++..+ T Consensus 147 ~~~~~~~~~~~~~ipi~a~GGI~~~~v~~~~----~~Gad~v~vGsai~~~~~~~~~~~ 201 (217) T 3lab_A 147 AKLLKAWSGPFPDIQFCPTGGISKDNYKEYL----GLPNVICAGGSWLTESKLLIEGDW 201 (217) T ss_dssp HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHH----HSTTBCCEEESGGGCHHHHHHTCH T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHH----HCCCEEEEECCHHCCHHHHHCCCH T ss_conf 9999997457999838853799989999999----689829998831069666523899 No 97 >>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235) Probab=41.47 E-value=26 Score=16.26 Aligned_cols=128 Identities=9% Similarity=-0.008 Sum_probs=69.3 Q ss_pred CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHHH Q ss_conf 623446899987410702332013830002756389703589999999999708916701404887642-0688999999 Q gi|254780676|r 173 DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLMD 251 (329) Q Consensus 173 Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l~ 251 (329) |+.+....++.++++|.+-+-=+--|-|-.+ -+.+...++++.+.+.. -.+|+|.|. +.+|.++..+ T Consensus 45 D~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~------Lt~eEr~~~v~~~~~~~------~pvi~gv~~~~t~~~i~~a~ 112 (235) T 2hmc_A 45 DFDALVRKGKELIADGXSAVVYCGSXGDWPL------LTDEQRXEGVERLVKAG------IPVIVGTGAVNTASAVAHAV 112 (235) T ss_dssp CHHHHHHHHHHHHHTTCCCEEESSGGGTGGG------SCHHHHHHHHHHHHHTT------CCEEEECCCSSHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEECEECCCCCC------CCHHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999999779999997833757230------89999999999874157------75100442013778888887 Q ss_pred HHHHCCCCEEECC-HHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHC-CCC-EEECCCCCCCCHHHHHHHHHHHH Q ss_conf 9996699399750-2227861007800023846-999999999974-962-43404830010318999999999 Q gi|254780676|r 252 DLRTADVDFLTMG-QYLQPTRKHHKVESFVTPQ-DFKSYETIAYSK-GFL-MVSASPLTRSSYHAGDDFLRLKN 321 (329) Q Consensus 252 DLr~~gvdilTiG-QYL~Ps~~h~pV~ryv~P~-eF~~~~~~a~~~-Gf~-~V~SgPlVRSSY~A~e~~~~~~~ 321 (329) +..++|+|-+-+. .|. .++..++ -++.|++++... ++. .+..-|-.--....-+.+.++.+ T Consensus 113 ~A~~~Gadavlv~~P~~---------~~~~~~~~i~~~~~~ia~~~~~~pi~iyn~P~~~g~~~~~~~l~~La~ 177 (235) T 2hmc_A 113 HAQKVGAKGLXVIPRVL---------SRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAE 177 (235) T ss_dssp HHHHHTCSEEEECCCCS---------SSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHH T ss_pred HHHHHCCCEEEEECCCC---------CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCC T ss_conf 89982885022200112---------333541568999986631587744888703446454442134433013 No 98 >>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243) Probab=41.11 E-value=27 Score=16.22 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHHCCCCEE Q ss_conf 8999999999970891670140488764-206889999999996699399 Q gi|254780676|r 213 FHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRTADVDFL 261 (329) Q Consensus 213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~~gvdil 261 (329) +.+.++++.+.+... -+.-+|+|.| .+-+|.++.++...++|+|-+ T Consensus 53 ~Er~~l~~~~~~~~~---~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~i 99 (243) T 2rfg_A 53 EEHKRVVALVAEQAQ---GRVPVIAGAGSNNPVEAVRYAQHAQQAGADAV 99 (243) T ss_dssp HHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHHHHHHHHHHHHTCSEE T ss_pred HHHHHHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 999999999999918---98409973454469999999999998499976 No 99 >>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} (A:1-234) Probab=40.85 E-value=27 Score=16.19 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCC-----CEEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHH Q ss_conf 689999999974982365257887876750897-----26999866522353522344678998--88823579999999 Q gi|254780676|r 53 GYKETYNILRSRNLTTVCEEAGCPNIGECWNKN-----HATFMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAV 125 (329) Q Consensus 53 ~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~g-----tATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av 125 (329) ....+++++++.+.-+. ||.+.+++.+ -.-.+.+|+-. .+...|.|. .+..+|-...++.| T Consensus 22 ~~~~lr~~~~~~~~i~~------~~~~D~~sA~i~~~~g~~ai~~s~~~------~a~~~G~~D~~~l~~~e~~~~~~~i 89 (234) T 1oy0_A 22 RTHHLQRWKADGHKWAM------LTAYDYSTARIFDEAGIPVLLVGDSA------ANVVYGYDTTVPISIDELIPLVRGV 89 (234) T ss_dssp CHHHHHHHHHHTCCEEE------EECCSHHHHHHHHTTTCCEEEECTTH------HHHTTCCSSSSSCCGGGTHHHHHHH T ss_pred CHHHHHHHHHCCCCEEE------EECCCHHHHHHHHHCCCCEEEECCCH------HHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 69999999867994899------95689999999997599889976744------8640577677767889999999999 Q ss_pred HHH-CCCEEEEECCCCCCCCCC-----HHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH Q ss_conf 970-775189850544534532-----5899999999998533-58689981546234468999874107023320 Q gi|254780676|r 126 RSM-KLSHVVITSVDRDDLDDG-----GAQHFAEVISAIRESA-PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH 194 (329) Q Consensus 126 ~~l-~Lk~vViTSV~RDDL~Dg-----GA~hfa~~I~~Ir~~~-P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH 194 (329) .+. .+-+++. |+++| ++.+..++|+.+.+.- -++.|| |-.+..........+...+..| T Consensus 90 ~~~~~~~~iia------D~~~G~~~~~~~~~v~~~v~~l~~aGa~gi~iE----D~~~~~~~~~~~~~~~i~~~~~ 155 (234) T 1oy0_A 90 VRGAPHALVVA------DLPFGSYEAGPTAALAAATRFLKDGGAHAVKLE----GGERVAEQIACLTAAGIPVMAH 155 (234) T ss_dssp HHHCTTSEEEE------ECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEE----BSGGGHHHHHHHHHHTCCEEEE T ss_pred HCCCCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC----CCHHHHHHHHHHHHCCCCEEEE T ss_conf 73787653784------366534477999999999999997434545546----7475999999999879966752 No 100 >>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} (A:1-280) Probab=40.31 E-value=27 Score=16.14 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=5.6 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 882357999999997 Q gi|254780676|r 113 LDPQEPENISWAVRS 127 (329) Q Consensus 113 ~D~~EP~rvA~av~~ 127 (329) +..+|=.++.+.+.+ T Consensus 84 Ls~eEr~~l~~~~~~ 98 (280) T 2r8w_A 84 LTREERRRAIEAAAT 98 (280) T ss_dssp SCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 899999999999999 No 101 >>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* (A:) Probab=39.89 E-value=28 Score=16.09 Aligned_cols=146 Identities=19% Similarity=0.185 Sum_probs=71.9 Q ss_pred CCCCHHHHHHH-------HHHHHHHCCCEEEEE-------------C-CCCCCCCCCH-----HHHHHHHHHHHHHHCC- Q ss_conf 88882357999-------999997077518985-------------0-5445345325-----8999999999985335- Q gi|254780676|r 111 QPLDPQEPENI-------SWAVRSMKLSHVVIT-------------S-VDRDDLDDGG-----AQHFAEVISAIRESAP- 163 (329) Q Consensus 111 ~~~D~~EP~rv-------A~av~~l~Lk~vViT-------------S-V~RDDL~DgG-----A~hfa~~I~~Ir~~~P- 163 (329) .++..+|...+ |.-+++.|..-|-|. . -.|+|-- || +....++|++||+..+ T Consensus 140 ~~lt~~~i~~~~~~~~~AA~~a~~aGfDgVeih~a~gyL~~qf~sp~~N~R~d~y-Ggsl~nR~r~~~eii~air~~~~~ 218 (349) T 3hgj_A 140 EPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAY-GGSLENRMRFPLQVAQAVREVVPR 218 (349) T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHSCT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 6489999999999999999999983999578522504699984598779887776-868777679999999999997289 Q ss_pred CCEEEEECC--CCCC-------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 868998154--6234-------4689998741070233201383000275638970358999999999970891670140 Q gi|254780676|r 164 STTIEVLTP--DFLR-------KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSG 234 (329) Q Consensus 164 ~~~IEvLiP--Df~G-------~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSG 234 (329) +.+|-+.++ |+.. -.+.++.+.+++.|.++--.-+...-+ ...+.+...+...+.+|.....-+ T Consensus 219 ~~~v~iRi~~~~~~~~~~~~ee~~~la~~l~~~gvd~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~~pv---- 291 (349) T 3hgj_A 219 ELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRV---RIPLAPGFQVPFADAVRKRVGLRT---- 291 (349) T ss_dssp TSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSS---CCCCCTTTTHHHHHHHHHHHCCEE---- T ss_pred CCEEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCE---- T ss_conf 8728996761005689988899999999999739886874146431333---456675433689999998769868---- Q ss_pred EEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 488764206889999999996699399750222 Q gi|254780676|r 235 IMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 235 lMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) ++.|=.-+.++..+ -|.+-+||++.||..+ T Consensus 292 i~~G~i~~~~~a~~---~l~~~~~D~V~igR~~ 321 (349) T 3hgj_A 292 GAVGLITTPEQAET---LLQAGSADLVLLGRVL 321 (349) T ss_dssp EECSSCCCHHHHHH---HHHTTSCSEEEESTHH T ss_pred EEECCCCCHHHHHH---HHHCCCCCHHHHHHHH T ss_conf 99889399999999---9987993014988999 No 102 >>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219) Probab=39.81 E-value=28 Score=16.09 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=13.0 Q ss_pred EEEEEEE-CHHHHHHHHHHHHHCCCCEEEC Q ss_conf 4887642-0688999999999669939975 Q gi|254780676|r 235 IMLGLGE-TRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 235 lMvGLGE-t~eEi~e~l~DLr~~gvdilTi 263 (329) +|+|.|. +-+|.++.+++..++|+|-+-+ T Consensus 84 vi~gv~~~st~~~i~~a~~a~~~Gad~i~v 113 (219) T 1xky_A 84 VIAGTGSNNTHASIDLTKKATEVGVDAVML 113 (219) T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 675356422899999999999749999997 No 103 >>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:) Probab=39.76 E-value=22 Score=16.80 Aligned_cols=143 Identities=7% Similarity=-0.040 Sum_probs=67.5 Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEECCCCC Q ss_conf 6789988-88235799999999707751898505445345325899999999998---------5335868998154623 Q gi|254780676|r 106 ATGKPQP-LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIR---------ESAPSTTIEVLTPDFL 175 (329) Q Consensus 106 ~~G~P~~-~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir---------~~~P~~~IEvLiPDf~ 175 (329) ..|.+.+ +.+.+-.++-+++.++|+.-- .|-.--+...++.|.+.- ..++.-+|-||+-- T Consensus 72 ~~~~~~~~~t~~q~~~ie~~~~~~Gls~~--------~LmE~Ag~~~a~~i~~~~~~~~~~~~~~~~~~~~V~vl~G~-- 141 (306) T 3d3j_A 72 DSGLVVPSISYELHKKLLSVAEKHGLTLE--------RRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGP-- 141 (306) T ss_dssp TTCCEEECCCHHHHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHHHHHHHC-----------CCCEEEEEECS-- T ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCCHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC-- T ss_conf 99827225889999999999998099889--------99999999999999998287632464546889979999899-- Q ss_pred CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC--------CCE----EEEEEEC- Q ss_conf 446899987410702332013830002756389703589999999999708916701--------404----8876420- Q gi|254780676|r 176 RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK--------SGI----MLGLGET- 242 (329) Q Consensus 176 G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK--------SGl----MvGLGEt- 242 (329) |+.-. +-+. ++-...+|+.+.+=-+.. +....+....-+...+..+..+... ..+ |+|.|.+ T Consensus 142 gnnGg-dgl~-~AR~L~~~G~~V~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIDal~G~g~~r 216 (306) T 3d3j_A 142 HVKGA-QGIS-CGRHLANHDVQVILFLPN---FVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVF 216 (306) T ss_dssp SHHHH-HHHH-HHHHHHHTTCEEEEECCC---CSSCCHHHHHHHHHHHTSSCEEESCSTTSCSSCCSEEEEECCCTTCGG T ss_pred CCCCH-HHHH-HHHHHHHCCCEEEEEEEC---CCCCCHHHHHHHHHHHHCCCCEECCHHHHCCCCCCEEEECCCCCCCCC T ss_conf 98729-9999-999999779838999727---866798999999999863896534235534577758998424366677 Q ss_pred ---HHHHHHHHHHHHHCCCCEEEC Q ss_conf ---688999999999669939975 Q gi|254780676|r 243 ---RNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 243 ---~eEi~e~l~DLr~~gvdilTi 263 (329) .+.+.+++.-+...+..+|-| T Consensus 217 ~~~~~~~~~li~~~N~~~~~vlsi 240 (306) T 3d3j_A 217 LRDQPWYKAAVAWANQNRAPVLSI 240 (306) T ss_dssp GGGCHHHHHHHHHHHHSCCCEEEE T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 765199999999998569977998 No 104 >>3ler_A DHDPS, dihydrodipicolinate synthase; TIM barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MCL MSE; 1.84A {Campylobacter jejuni subsp} (A:) Probab=39.14 E-value=28 Score=16.02 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=12.6 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 823579999999970775189850544 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDR 140 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~R 140 (329) +..|-.+.|+.++++|...+.+...-- T Consensus 88 ~t~~~i~~a~~A~~~Gad~ilv~~P~~ 114 (301) T 3ler_A 88 ATHEAVGLAKFAKEHGADGILSVAPYY 114 (301) T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCS T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 099999999999975999887358888 No 105 >>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229) Probab=38.95 E-value=29 Score=16.00 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=38.0 Q ss_pred CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEEE-CHHHHHHHH Q ss_conf 62344689998741070233201383000275638970358999999999970-8916701404887642-068899999 Q gi|254780676|r 173 DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLGE-TRNEILQLM 250 (329) Q Consensus 173 Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLGE-t~eEi~e~l 250 (329) |+.+-...++.++++|.+-+-=|--|-+-.+ -+-+...++++.+.+. +.+ --+|+|.|. +-+|.++.. T Consensus 21 D~~~l~~~i~~~~~~Gv~gl~~~G~tGE~~~------Lt~~Er~~~~~~~~~~~~~~----~~ii~gv~~~s~~~~i~~a 90 (229) T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPT------LTTDEKELILKTVIDLVDKR----VPVIAGTGTNDTEKSIQAS 90 (229) T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGG------SCHHHHHHHHHHHHHHHTTS----SCEEEECCCSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCHHHHHHHHHHHHHHHCCC----CCEEECCCCHHHHHHHHHH T ss_conf 9999999999999769999997805644002------78999999975567750244----7501112111378888999 Q ss_pred HHHHHCCCCEEEC--CHHCCCCC Q ss_conf 9999669939975--02227861 Q gi|254780676|r 251 DDLRTADVDFLTM--GQYLQPTR 271 (329) Q Consensus 251 ~DLr~~gvdilTi--GQYL~Ps~ 271 (329) +...++|+|-+-+ -.|..||. T Consensus 91 ~~a~~~G~d~i~v~pP~~~~~~~ 113 (229) T 3daq_A 91 IQAKALGADAIMLITPYYNKTNQ 113 (229) T ss_dssp HHHHHHTCSEEEEECCCSSCCCH T ss_pred HHHHHCCCCEEEEECCCCCCCCH T ss_conf 99996299828862021557999 No 106 >>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} (A:1-235) Probab=38.81 E-value=15 Score=17.88 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=70.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHCCCEEEECCCEEEEEEE Q ss_conf 899815462344689998741070233201383000275638970358----9999999999708916701404887642 Q gi|254780676|r 166 TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYF----HSLRLLQRVKELDPLIFTKSGIMLGLGE 241 (329) Q Consensus 166 ~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGLGE 241 (329) .|+-.++|| ..+....++++-|-+.=|.=.--..-..-..+++.. .-++++..+++... ...-..+..|. T Consensus 64 qI~~~~~~~---~~aa~~a~~agfDgVeih~~~p~~n~~~~~~G~s~~~r~~~~~~i~~a~~~~~~---~~~~~~~~~~~ 137 (235) T 1vhn_A 64 QIFGSEPNE---LSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS---GKFSVKTRLGW 137 (235) T ss_dssp EEECSCHHH---HHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS---SEEEEEEESCS T ss_pred EEECCCHHH---HHHHHHHHHCCCEEEEEEEEECCHHHHCCCCCEEEECCHHHHHHHHHHHHHHCC---CCCCCCCCCCC T ss_conf 885378788---888999875375276466530520431233231330483889999888775023---33344432475 Q ss_pred CHHHHHHHHHHHHHCCCCEEECC-----HHCCCCCCC---------CCC---CCCCCHHHHHHHHHHHHHCCCCEEECC Q ss_conf 06889999999996699399750-----222786100---------780---002384699999999997496243404 Q gi|254780676|r 242 TRNEILQLMDDLRTADVDFLTMG-----QYLQPTRKH---------HKV---ESFVTPQDFKSYETIAYSKGFLMVSAS 303 (329) Q Consensus 242 t~eEi~e~l~DLr~~gvdilTiG-----QYL~Ps~~h---------~pV---~ryv~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329) ..++..+.+..|.+.|+|.|++. |+-++.... .|| -...++++.+++-+.+ |...|+-| T Consensus 138 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~G~i~s~~~a~~~l~~~---~~D~V~ig 213 (235) T 1vhn_A 138 EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEES---GCDGLLVA 213 (235) T ss_dssp SSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCCSSCEEEESSCCSHHHHHHHHHHH---CCSEEEES T ss_pred CCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---CCCEEEEH T ss_conf 42024578899997395389850023440468851245677764433001366669999999999711---99968534 No 107 >>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} (A:) Probab=38.67 E-value=29 Score=15.97 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=13.9 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 999999970775189850544534 Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDL 143 (329) Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL 143 (329) .-.+.|+++.-...|++-|.+-|- T Consensus 140 ~~~~~I~~~~~~f~v~sEvG~Kd~ 163 (276) T 1u83_A 140 EKAAYIADFSDEFLVLSEVGSKDA 163 (276) T ss_dssp HHHHHHHHHTTTSEEEEECSCCC- T ss_pred HHHHHHHHHHHCCEECCCCCCCCC T ss_conf 999999999967920454577676 No 108 >>1oya_A OLD yellow enzyme; oxidoreductase (flavoprotein); HET: FMN; 2.00A {Saccharomyces pastorianus} (A:1-120,A:164-351) Probab=38.40 E-value=29 Score=15.94 Aligned_cols=159 Identities=10% Similarity=0.017 Sum_probs=83.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCC---CC----CCHHHHHHHHHCCCHHHHHCCCCC----C--CCCCCCCC--- Q ss_conf 32589999999999853358689981546---23----446899987410702332013830----0--02756389--- Q gi|254780676|r 145 DGGAQHFAEVISAIRESAPSTTIEVLTPD---FL----RKPHALEKVVSAKPDVFNHNLETV----A--SNYLMVRP--- 208 (329) Q Consensus 145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD---f~----G~~~al~~v~~A~pdV~nHNiETV----~--rLy~~VRp--- 208 (329) |.-...|.+.+.+|++..--+.+.+--+. +. .-.++.+.+.++|-|.+.=|.--- . .-+..+|. T Consensus 92 ~~~~~~~~~i~~~vh~~g~~~~~Ql~h~G~~~i~~~i~~~~~aA~~a~eaG~DgIein~~~~~L~~qf~~p~~n~r~d~~ 171 (308) T 1oya_A 92 EEQMVEWTKIFNAIHEKKSFVWVQLWVLGKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEY 171 (308) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTT T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCCC T ss_conf 89987767999999617754414344146788999999999999999973988789840021149873376258987767 Q ss_pred CCHHH----HHHHHHHHHHHCCCEEEECCCEEEEE------------EECHHHHHHHHHHHHHCCCCEEECCH--HCCCC Q ss_conf 70358----99999999997089167014048876------------42068899999999966993997502--22786 Q gi|254780676|r 209 GARYF----HSLRLLQRVKELDPLIFTKSGIMLGL------------GETRNEILQLMDDLRTADVDFLTMGQ--YLQPT 270 (329) Q Consensus 209 ~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGL------------GEt~eEi~e~l~DLr~~gvdilTiGQ--YL~Ps 270 (329) ++... --.++++.+++..++++ =++-+.. +++-++.++.+.-|.++|||.+++.. +-+.. T Consensus 172 G~~l~~r~r~~~eii~~vr~a~~~~p--V~vKi~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~g~d~i~i~~~~~~~~~ 249 (308) T 1oya_A 172 GGSIENRARFTLEVVDALVEAIGHEK--VGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPR 249 (308) T ss_dssp SSSHHHHTHHHHHHHHHHHHHHCGGG--EEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTT T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC T ss_conf 98788876899999999999718775--7999772004567777410015789999999999744346443411230466 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 10078000238469999999999749624340483 Q gi|254780676|r 271 RKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPL 305 (329) Q Consensus 271 ~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl 305 (329) ....+-..+..+...+..+++........+.+|-. T Consensus 250 ~~~~~~~~~~~~~~l~~~~~i~~~~~iPvi~~GgI 284 (308) T 1oya_A 250 VTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNF 284 (308) T ss_dssp CSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSC T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC T ss_conf 77754455531000578999999838988997898 No 109 >>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} (A:) Probab=38.24 E-value=29 Score=15.92 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=87.2 Q ss_pred HHH-HHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--- Q ss_conf 689-9999999749823652578878767508972699986652235352234467899888823579999999970--- Q gi|254780676|r 53 GYK-ETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM--- 128 (329) Q Consensus 53 ~~~-~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l--- 128 (329) ++. .+-.+|++++. .|||.+.|+.= ...|..+-+.+++. T Consensus 68 ~~~~~~l~~L~~~~i-------------------~aTffv~g~~~------------------~~~~~~~~~~~~~Ghei 110 (247) T 2j13_A 68 GYTGKILDVLKEKKV-------------------PATFFVTGHYI------------------KTQKDLLLRMKDEGHII 110 (247) T ss_dssp SCHHHHHHHHHHHTC-------------------CEEEEECHHHH------------------HHCHHHHHHHHHTTCEE T ss_pred CCHHHHHHHHHHCCC-------------------CEEEEEECHHH------------------HHCHHHHHHCCCCCCEE T ss_conf 765999999998799-------------------68999967313------------------32917776410689589 Q ss_pred ---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC-CHHHHHCCCCCCCCCC Q ss_conf ---775189850544534532589999999999853358689981546234468999874107-0233201383000275 Q gi|254780676|r 129 ---KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK-PDVFNHNLETVASNYL 204 (329) Q Consensus 129 ---~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~-pdV~nHNiETV~rLy~ 204 (329) +..|.-++.++.+.+ ...+.++.+.+++..+....-.-.|-+....+.+..+...+ .-+..-... T Consensus 111 g~Ht~~H~~l~~l~~e~~----~~ei~~~~~~l~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------- 179 (247) T 2j13_A 111 GNHSWSHPDFTAVNDEKL----REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVFWSLA------- 179 (247) T ss_dssp EECCSSCCCGGGSCHHHH----HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEECCSEE------- T ss_pred EEECCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCC------- T ss_conf 740256787111138999----999999999999986378865456870333123469999809857723455------- Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE----ECHHHHHHHHHHHHHCCCCEEECCHHCCC Q ss_conf 638970358999999999970891670140488764----20688999999999669939975022278 Q gi|254780676|r 205 MVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG----ETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329) Q Consensus 205 ~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG----Et~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329) .......+...+.+....... ..+.+.++=+. .+.+.+-+.++.|++.|-.++|++|||.. T Consensus 180 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~G~~~vtl~~~~~~ 244 (247) T 2j13_A 180 ---FLDWKVDEQRGWQYAHNNVMT-MIHPGSILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKS 244 (247) T ss_dssp ---CCCC-------------------CCTTBEEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHT T ss_pred ---CCCCCCCCHHHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCC T ss_conf ---677642101589999999995-27999689953999779999999999999789999886996357 No 110 >>3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei} (A:) Probab=38.15 E-value=9 Score=19.54 Aligned_cols=226 Identities=10% Similarity=0.011 Sum_probs=100.7 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCC-----EEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH Q ss_conf 899999999749823652578878767508972-----6999866522353522344678998--888235799999999 Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNH-----ATFMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAVR 126 (329) Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gt-----ATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av~ 126 (329) ...+++++++...-.. ||...|++... .-.+.+|+-. .+...|.|. .++.+|-...+..|. T Consensus 12 ~~~lr~l~~~~~~i~~------~~~~D~~sA~~~e~~g~~ai~~s~~~------~a~~~G~pD~~~~~~~e~~~~~~~I~ 79 (269) T 3ez4_A 12 VPKLQAMREAGEKIAM------LTSYDASFAALLDRANVDVQLIGDSL------GNVLQGQATTLPVTLDDIAYHTACVA 79 (269) T ss_dssp HHHHHHHHHHTCCEEE------EECCSHHHHHHHHHTTCSEEEECTTH------HHHTTCCSSSTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEE------EECCCHHHHHHHHHCCCCEEEEECCH------HHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999999848994899------98989999999987699999995778------97317886722454555778889998 Q ss_pred HHCCCEEEEECCCCCCCCCCH---HHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH------CC Q ss_conf 707751898505445345325---89999999999853-358689981546234468999874107023320------13 Q gi|254780676|r 127 SMKLSHVVITSVDRDDLDDGG---AQHFAEVISAIRES-APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH------NL 196 (329) Q Consensus 127 ~l~Lk~vViTSV~RDDL~DgG---A~hfa~~I~~Ir~~-~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH------Ni 196 (329) +.--...|+ +|+++|+ ....+++|+++-+. .-++.|| |-.+..........+...+..| -+ T Consensus 80 ~~~~~~pii-----~D~~~G~~g~~~~v~~~v~~~~~aGa~gi~iE----D~~~~~~~~~~~~~~~i~~~~~~~~i~a~~ 150 (269) T 3ez4_A 80 RAQPRGLVV-----ADLPFGTYGTPADAFASAVKLMRAGAQMVKLE----GGEWLAETVRFLVERAVPVCAHVGLTPQSV 150 (269) T ss_dssp HTCCSSEEE-----EECCTTSCSSHHHHHHHHHHHHHHTCSEEEEE----CSGGGHHHHHHHHHTTCCEEEEEC------ T ss_pred HHCCCCEEE-----ECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEC----CCHHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 527771266-----13542113563899999999996598776304----535788999999982974772520050156 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC Q ss_conf 83000275638970358999999999970891670140488764206889999999996699399750222786100780 Q gi|254780676|r 197 ETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV 276 (329) Q Consensus 197 ETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV 276 (329) .....++-.-|+-+..+..++-.+...++|.+.. ++-|+- .++..... .....-.+.++.=.-..... T Consensus 151 ~a~~d~~i~aRtda~~~e~i~Ra~ay~eaGAd~i----~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 218 (269) T 3ez4_A 151 HAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLI----VLEAVP--TLVAAEVT---RELSIPTIGIGAGAECSGQV--- 218 (269) T ss_dssp --------------CHHHHHHHHHHHHHHTCSEE----EEESCC--HHHHHHHH---HHCSSCEEEESSCSCSSEEE--- T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEE----ECCCCC--HHHHHHHH---HHCCCEEEEECCCCCCCEEE--- T ss_conf 5538860316448889999999999985201453----013546--68999998---41895089713677786038--- Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCC-CCCCHHH-HHHHHHHHHH Q ss_conf 00238469999999999749624340483-0010318-9999999999 Q gi|254780676|r 277 ESFVTPQDFKSYETIAYSKGFLMVSASPL-TRSSYHA-GDDFLRLKNN 322 (329) Q Consensus 277 ~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl-VRSSY~A-~e~~~~~~~~ 322 (329) .+.++ + .++|+..+.-|+. .|+++.+ .+.+..+.+. T Consensus 219 ---l~~~~---l----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (269) T 3ez4_A 219 ---LVLHD---M----LGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRA 256 (269) T ss_dssp ---ECHHH---H----TTCSCSSCCTTCCCTTTTCSSHHHHHHHHHHH T ss_pred ---EEHHH---H----HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---85777---5----47899999826988761579999999999999 No 111 >>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} (A:164-276) Probab=37.23 E-value=30 Score=15.81 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=54.5 Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf 99999999853-35868998154623446899987410702332013830002756389703589999999999708916 Q gi|254780676|r 151 FAEVISAIRES-APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329) Q Consensus 151 fa~~I~~Ir~~-~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329) +-..++++|+. .|+..|++-+- +.+.+....++++|++-= -+ ..=......++..++..+++ T Consensus 20 ~~~~~~~~~~~~~~~~~ig~~~~----~~~e~~~a~~~gaD~i~~------------~~-~~~~~~~~~v~~~~~~~~~i 82 (113) T 2jbm_A 20 VEKAVRAARQAADFALKVEVECS----SLQEAVQAAEAGADLVLL------------DN-FKPEELHPTATVLKAQFPSV 82 (113) T ss_dssp HHHHHHHHHHHHTTTSCEEEEES----SHHHHHHHHHTTCSEEEE------------ES-CCHHHHHHHHHHHHHHCTTS T ss_pred HHHHHHHHHHHCCCCEEEEECCC----CHHHHHHHHHCCCCEEEE------------CC-CCHHHHHHHHHHHHCCCCCE T ss_conf 57510034330254058896358----889999999759989997------------58-99999999999984648966 Q ss_pred EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH Q ss_conf 701404887642068899999999966993997502 Q gi|254780676|r 230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ 265 (329) Q Consensus 230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329) . ++..=|=|.+ .+.++.++|+|.+-+|- T Consensus 83 p----i~a~GGIt~~----~i~~~~~aGad~i~vga 110 (113) T 2jbm_A 83 A----VEASGGITLD----NLPQFCGPHIDVISMGM 110 (113) T ss_dssp E----EEEESSCCTT----THHHHCCTTCCEEECTH T ss_pred E----EEEECCCCHH----HHHHHHHCCCCEEECCH T ss_conf 9----9998999899----99999973999998596 No 112 >>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} (A:) Probab=37.04 E-value=30 Score=15.79 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=24.7 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 999999707751898505445345325899999999998533 Q gi|254780676|r 121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESA 162 (329) Q Consensus 121 vA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~ 162 (329) -|...+.+|.+||.|----|-.+-+.-....++.++...+.. T Consensus 80 S~~~Lkd~G~~~vliGHSERR~~f~Et~~~i~~Kv~~a~~~g 121 (257) T 2dp3_A 80 SVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG 121 (257) T ss_dssp CHHHHHHTTCCEEEECCHHHHHTSCCCHHHHHHHHHHHHHTT T ss_pred CHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 177776316524664245443344200889999999999759 No 113 >>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392) Probab=37.03 E-value=30 Score=15.79 Aligned_cols=148 Identities=14% Similarity=0.011 Sum_probs=92.0 Q ss_pred CHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHCCCHH Q ss_conf 8235799999-99970775189850544534532589999999999853358689981546234-468999874107023 Q gi|254780676|r 114 DPQEPENISW-AVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR-KPHALEKVVSAKPDV 191 (329) Q Consensus 114 D~~EP~rvA~-av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G-~~~al~~v~~A~pdV 191 (329) |..+-.-+|+ .++.++.|.|.|-..| .+.|-+......+..++..-.+.-+.-+|.-.. ....+..+.+++||+ T Consensus 2 d~~q~~ala~~i~~~~g~k~Vaii~~d----~~~G~~~~~~f~~~l~~~G~evv~~~~~~~~~~d~s~~i~~ik~a~pdv 77 (172) T 3lkb_A 2 YSEQVVALLEYIAREKKGAKVALVVHP----SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEY 77 (172) T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEECS----SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECC----CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCE T ss_conf 688888899999876289779999335----6303899999999998749879999814899723557888765369989 Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC Q ss_conf 32013830002756389703589999999999708916701404887642068899999999966993997502227861 Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR 271 (329) Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~ 271 (329) +-. .........+++.+++.|.+. -++.+-+=..+.+.+. +-+..-.++...+|-.+.. T Consensus 78 Vv~--------------~~~~~~~~~ilk~a~~~G~~~----~~i~~~~~~~~~~~~~---~g~~~eGv~~~~~~~~~~~ 136 (172) T 3lkb_A 78 VVH--------------QNVAGPVANILKDAKRLGLKM----RHLGAHYTGGPDLIAL---AGDAAEGFLWATSFYMAGL 136 (172) T ss_dssp EEE--------------ESCHHHHHHHHHHHHHTTCCC----EEEECGGGCSHHHHHH---HGGGGTTCEEEESBCCTCB T ss_pred EEE--------------ECCCHHHHHHHHHHHHCCCCC----EEEEECCCCCHHHHHH---HHHHHCCEEEEEECCCCCE T ss_conf 999--------------366267999999999839996----4999556788889988---7887587799995277748 Q ss_pred CC--------CCCCCCCCHHHHH Q ss_conf 00--------7800023846999 Q gi|254780676|r 272 KH--------HKVESFVTPQDFK 286 (329) Q Consensus 272 ~h--------~pV~ryv~P~eF~ 286 (329) +- .||-+-.+-.-|. T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (172) T 3lkb_A 137 RILEAKGGRFVPVTEPFTSALFR 159 (172) T ss_dssp EEEEEETTEEEECSCCBCCHHHH T ss_pred EEEEEECCEEEEECCCCCCCEEE T ss_conf 99999999799925753412564 No 114 >>3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} (B:1-129) Probab=37.03 E-value=28 Score=16.02 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=34.8 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 86652235352234467899888823579999999970775189850 Q gi|254780676|r 91 ILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137 (329) Q Consensus 91 ilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTS 137 (329) .+|....+.=.|+.|.-..|..++++.-..+|+.+++.|..++=+|+ T Consensus 40 ~~~~~~~~~~~~~~vRi~~pG~it~~ql~~la~iA~kyg~g~i~~Tt 86 (129) T 3c7b_B 40 VIKRVAESGDVIYVVRFGTPRLLSIYTVRELCDIADKYSDGYLRWTS 86 (129) T ss_dssp EEEEEETTSCEEEEEEECCCSEEEHHHHHHHHHHHHHHSTTEEEECT T ss_pred EEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECC T ss_conf 69997787986899967987724899999999999986898045516 No 115 >>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* (A:1-130,A:281-345) Probab=36.75 E-value=31 Score=15.76 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=45.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEE-CC-CCCCCHHHHHHHHHCC--CHHHHHCCCCCCCCCC--CCCCCCHHHH Q ss_conf 9999999999853358689981-54-6234468999874107--0233201383000275--6389703589 Q gi|254780676|r 149 QHFAEVISAIRESAPSTTIEVL-TP-DFLRKPHALEKVVSAK--PDVFNHNLETVASNYL--MVRPGARYFH 214 (329) Q Consensus 149 ~hfa~~I~~Ir~~~P~~~IEvL-iP-Df~G~~~al~~v~~A~--pdV~nHNiETV~rLy~--~VRp~a~Y~r 214 (329) ..+.+.|.+..+.+|+++|++- +| +.....+.|.+-+.++ |||+.=+...++.+.. .+.+-.+|-. T Consensus 31 ~~~~~~~~~f~k~~p~i~V~~~~~~~~~~~~~~kl~~~~~ag~~pDi~~~~~~~~~~~~~~g~l~dL~~~~~ 102 (195) T 2z8f_A 31 TLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSGEAPDLAQVGYAELPEVFTKGLLQDVTQYAE 102 (195) T ss_dssp CCHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCBCCCHHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHH T ss_conf 999999999998883939999980797899999999999779998699989088999998699665853444 No 116 >>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A (A:1-278) Probab=36.62 E-value=31 Score=15.75 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=18.3 Q ss_pred CCCCHHHHHHHHHHHHH-HCCCEEEEECCCCCCC Q ss_conf 88882357999999997-0775189850544534 Q gi|254780676|r 111 QPLDPQEPENISWAVRS-MKLSHVVITSVDRDDL 143 (329) Q Consensus 111 ~~~D~~EP~rvA~av~~-l~Lk~vViTSV~RDDL 143 (329) ..+..+|=.++.+.+.+ .+=+-.||-+|...+. T Consensus 79 ~~Lt~~Er~~l~~~~~~~~~~~~~vi~g~~~~st 112 (278) T 2v9d_A 79 SQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNA 112 (278) T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCH T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC T ss_conf 7684999999999999872665524422455662 No 117 >>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} (A:) Probab=36.35 E-value=31 Score=15.72 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=99.8 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCHHH---HHCCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHHH------ Q ss_conf 6899999999749823652578878767---50897269998665223535--223446789988882357999------ Q gi|254780676|r 53 GYKETYNILRSRNLTTVCEEAGCPNIGE---CWNKNHATFMILGAICTRAC--TFCNVATGKPQPLDPQEPENI------ 121 (329) Q Consensus 53 ~~~~~~~~l~~~~L~TVCeeA~CPNi~E---Cw~~gtATFMilG~~CTR~C--~FC~V~~G~P~~~D~~EP~rv------ 121 (329) .+.++...++.++-.-++|=..++..+- +|..+-....-....++-.- .........|.+++.+|...+ T Consensus 92 ~~~~~~~~vh~~g~~i~~Ql~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~i~~ii~~f~~ 171 (376) T 1icp_A 92 AWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRV 171 (376) T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHH T ss_pred HHHHHHHHHEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 87789877523586478876415631234566678887545444567633346655568887843305559999999999 Q ss_pred -HHHHHHHCCCEEEEE--------------CCCCCCCCCCH-----HHHHHHHHHHHHHHCCCCEEEE--ECCCCC---- Q ss_conf -999997077518985--------------05445345325-----8999999999985335868998--154623---- Q gi|254780676|r 122 -SWAVRSMKLSHVVIT--------------SVDRDDLDDGG-----AQHFAEVISAIRESAPSTTIEV--LTPDFL---- 175 (329) Q Consensus 122 -A~av~~l~Lk~vViT--------------SV~RDDL~DgG-----A~hfa~~I~~Ir~~~P~~~IEv--LiPDf~---- 175 (329) |.-++..|...|-|- +=.|+|-- || +....++|++||+..+...|-+ -.-|+. T Consensus 172 aA~~a~~AGfDgVeih~a~gyLl~qflsp~~N~R~D~y-GGslenR~r~~~eii~~ir~~~g~~~v~vr~~~~~~~~~~~ 250 (376) T 1icp_A 172 AARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKY-GGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAG 250 (376) T ss_dssp HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCC T ss_conf 99999972988677300353104315378778646868-99566658999999999998659872689960222136788 Q ss_pred C-CH---HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH Q ss_conf 4-46---8999874107023320138300027563897035899999999997089167014048876420688999999 Q gi|254780676|r 176 R-KP---HALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMD 251 (329) Q Consensus 176 G-~~---~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~ 251 (329) . .. ...+.+.+++.|.+.--..+-. .+...+.. ..++..+.+++... --+++|-.-|.++..++ T Consensus 251 ~~~e~~~~~~~~~e~~g~d~l~v~~~~~~--~~~~~~~~---~~~~~~~~i~~~~~-----~~v~~g~i~t~e~a~~~-- 318 (376) T 1icp_A 251 DTNPTALGLYMVESLNKYDLAYCHVVEPR--MKTAWEKI---ECTESLVPMRKAYK-----GTFIVAGGYDREDGNRA-- 318 (376) T ss_dssp CSCHHHHHHHHHHHHGGGCCSEEEEECCS--CCC---------CCCCSHHHHHHCC-----SCEEEESSCCHHHHHHH-- T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCC---CCHHHHHHHHHHCC-----CCEEEECCCCHHHHHHH-- T ss_conf 86289999999875457744678874487--66677754---32789999986358-----88899799898999999-- Q ss_pred HHHHCCCCEEECCHHCC Q ss_conf 99966993997502227 Q gi|254780676|r 252 DLRTADVDFLTMGQYLQ 268 (329) Q Consensus 252 DLr~~gvdilTiGQYL~ 268 (329) |.+-+||.+-+|-.+- T Consensus 319 -l~~g~~D~V~~gR~~l 334 (376) T 1icp_A 319 -LIEDRADLVAYGRLFI 334 (376) T ss_dssp -HHTTSCSEEEESHHHH T ss_pred -HHCCCCCCHHHHHHHH T ss_conf -9869966416529988 No 118 >>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, duplication of the alpha-beta sandwichs. bacillus subtilis; 2.00A {Bacillus subtilis} (A:74-139) Probab=36.30 E-value=31 Score=15.72 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=28.2 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC Q ss_conf 786100780002384699999999997496243404 Q gi|254780676|r 268 QPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSAS 303 (329) Q Consensus 268 ~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~Sg 303 (329) .||..||-|-=+-...++...-+--.++||..|.|- T Consensus 1 APt~d~LLVfY~~~~~~~~~~~~rl~~aG~~~V~s~ 36 (66) T 1twu_A 1 VPHPDSLLVFYVPNAVELAAITSKLKHMGYQEVESE 36 (66) T ss_dssp CCCTTCEEEEECCCHHHHHHHHHHHHHTTCCEECCS T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCC T ss_conf 013674588885767899999999987498775687 No 119 >>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} (A:) Probab=36.06 E-value=32 Score=15.69 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=61.0 Q ss_pred EEEEEECCCCCCC------------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH Q ss_conf 6999866522353------------------5223446789988882357999999997077518985054453453258 Q gi|254780676|r 87 ATFMILGAICTRA------------------CTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA 148 (329) Q Consensus 87 ATFMilG~~CTR~------------------C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA 148 (329) -+++++||--|.+ =.++-+..|.+..--.+...++...+...+-++|||..=.-|...+... T Consensus 2 ~~i~~iGDSi~~g~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~d~vii~~G~Nd~~~~~~~ 81 (190) T 1ivn_A 2 DTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQP 81 (190) T ss_dssp EEEEEEECHHHHCSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCTTTTSSSCCH T ss_pred CEEEEEECHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCH T ss_conf 98999966564287999667889999999648947995689988489999999987423799889883356640025447 Q ss_pred H----HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH Q ss_conf 9----99999999985335868998154623446899987 Q gi|254780676|r 149 Q----HFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKV 184 (329) Q Consensus 149 ~----hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v 184 (329) . .+.+.|+.+|+..|.+.+=...|-..-....++.+ T Consensus 82 ~~~~~~~~~~i~~~~~~~~~~vl~~~~~~~~~~~~~~~~~ 121 (190) T 1ivn_A 82 QQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAF 121 (190) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH T ss_conf 8999999999999997799089985147875116665579 No 120 >>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} (A:1-101,A:173-259,A:359-376) Probab=35.99 E-value=32 Score=15.68 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCC---------------CCCCCHHHHHHHHHHHHHHHC Q ss_conf 235799999999707751898505445---------------345325899999999998533 Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRD---------------DLDDGGAQHFAEVISAIRESA 162 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RD---------------DL~DgGA~hfa~~I~~Ir~~~ 162 (329) ...-.....-++.||..++-|+.+-.- |-.=|+-.-|.+.|++.+++. T Consensus 30 ~~gi~~~ldyl~~lGv~~i~L~Pi~~s~~~~~gY~~~d~~~i~~~~Gt~~df~~li~~ah~~G 92 (206) T 1uok_A 30 LRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERN 92 (206) T ss_dssp HHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 999998269999759988997988579999989585467875713399999999999999888 No 121 >>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A (A:1-329) Probab=35.97 E-value=32 Score=15.68 Aligned_cols=17 Identities=0% Similarity=0.137 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 23579999999970775 Q gi|254780676|r 115 PQEPENISWAVRSMKLS 131 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk 131 (329) .++=+++-++..+.|++ T Consensus 81 ~~~lk~LV~~aH~~Gi~ 97 (329) T 2dh2_A 81 KEDFDSLLQSAKKKSIR 97 (329) T ss_dssp HHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999850673 No 122 >>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} (A:124-242,A:299-500) Probab=35.61 E-value=32 Score=15.64 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=29.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECC---------------------C--C-CCCCCCHHHHHHHHHHHHHHHCCCCEE Q ss_conf 888235799999999707751898505---------------------4--4-534532589999999999853358689 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSV---------------------D--R-DDLDDGGAQHFAEVISAIRESAPSTTI 167 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV---------------------~--R-DDL~DgGA~hfa~~I~~Ir~~~P~~~I 167 (329) -=..+|-+...+++.+.|++-++=--+ | | |-.+......+....+++++..|+..+ T Consensus 93 ~G~~~~~~~li~~~h~~gi~vi~D~v~~np~V~~~l~~~l~~Wie~GIDGFR~Da~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (321) T 1wzl_A 93 FGDLPTFRRLVDEAHRRGIKIILDAVFENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALI 172 (321) T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEEECCTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEE T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEE T ss_conf 69989999999999868998999774250999999999742210148775310256510011110367888742874144 No 123 >>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263) Probab=35.28 E-value=15 Score=18.07 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=37.0 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 99999998533586899815462344689998741070233201383000275638970358999999999970891670 Q gi|254780676|r 152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT 231 (329) Q Consensus 152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T 231 (329) .++|+.+++. +..+-+++.|...-...+..-+ + +...|..+. =++.+.+++..+..+..+ T Consensus 43 ~e~I~~L~~~--Gi~v~IiTGD~~~~a~~ia~~l--g----------I~~v~a~v~----p~~K~~iv~~L~~~g~~V-- 102 (164) T 2iye_A 43 KDYLEKLKNE--GLKIIILSGDKEDKVKELSKEL--N----------IQEYYSNLS----PEDKVRIIEKLKQNGNKV-- 102 (164) T ss_dssp HHHHHHHHGG--GCEEEEECSSCHHHHHHHHHHH--T----------CSEEECSCC----HHHHHHHHHHHHHTTCCE-- T ss_pred HHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHH--C----------HHHHHHCCC----HHHHHHHHHHHHCCCCEE-- T ss_conf 9999999975--9927982387421101479985--3----------025340235----788988884552256058-- Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCCEE Q ss_conf 140488764206889999999996699399 Q gi|254780676|r 232 KSGIMLGLGETRNEILQLMDDLRTADVDFL 261 (329) Q Consensus 232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdil 261 (329) +|+|-|-.|-.. |+.++|-|- T Consensus 103 ---a~VGDg~ND~~a------L~~AdVGIa 123 (164) T 2iye_A 103 ---LMIGDGVNDAAA------LALADVSVA 123 (164) T ss_dssp ---EEEECSTTTHHH------HHHSSEEEE T ss_pred ---EEEECCCCHHHH------HHHCCEEEE T ss_conf ---999423104668------864879998 No 124 >>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} (A:) Probab=35.17 E-value=33 Score=15.59 Aligned_cols=212 Identities=15% Similarity=0.079 Sum_probs=113.6 Q ss_pred HHHHHHHHHHC-CCCEEECCCCCCCHHHHHCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 89999999974-9823652578878767508972-699986652235352234467899888823579999999970775 Q gi|254780676|r 54 YKETYNILRSR-NLTTVCEEAGCPNIGECWNKNH-ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS 131 (329) Q Consensus 54 ~~~~~~~l~~~-~L~TVCeeA~CPNi~ECw~~gt-ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk 131 (329) +..+++++..+ ..-.+|.++. .+-+++..|. |-+|-+ .-+.|..-|++ .-+....||++ T Consensus 99 i~~~~~~~~~~~~~~~~~~s~~--di~~~~~~gk~av~l~i-------------Ega~~l~~dl~----~L~~~~~lGvR 159 (417) T 3b40_A 99 YKILTGMVRDFPNQVGIAYSPE--DFRRLAMEGKFAIVMSM-------------LNAYPLGDDLS----QLDKWAARGVR 159 (417) T ss_dssp HHHHHHHHHHCTTTEEECSSHH--HHHHHHHTTCEEEEEEE-------------ECSGGGTTCTH----HHHHHHHTTCC T ss_pred HHHHHHHHHHCCCCEEECCCHH--HHHHHHHCCCCEEEEEE-------------CCCCCCCCCHH----HHHHHHHHHCE T ss_conf 9999999996854378528799--99998754564467851-------------04311366367----79999985013 Q ss_pred EEEEECCCCCCCCCC---------------HHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-CCCHHHHH Q ss_conf 189850544534532---------------58999-99999998533586899815462344689998741-07023320 Q gi|254780676|r 132 HVVITSVDRDDLDDG---------------GAQHF-AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS-AKPDVFNH 194 (329) Q Consensus 132 ~vViTSV~RDDL~Dg---------------GA~hf-a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~-A~pdV~nH 194 (329) |+-+|--.+-.+.|| |=..| .+.|+++-++ ++.|++-=- +..-.++.+-- ..|-|++| T Consensus 160 ~i~lthn~~N~~a~g~~~~~~~~~~~~~~~GLT~~G~~~V~~mn~l--GiiIDiSH~---s~~t~~dvl~~s~~Pvi~SH 234 (417) T 3b40_A 160 MFGFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDL--GVIIDVSQM---STKALEQVAALSRAPIVASH 234 (417) T ss_dssp EEECCSSSCCSSBCBSSCCGGGTCCTTTTSSBCHHHHHHHHHHHHH--TCEEECTTB---CHHHHHHHHHHCSSCEEEEE T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CEEECCCCC---CHHHHHHHHHCCCCCEEECC T ss_conf 7865753788126777776557876424577540219999986506--823216766---28899998750466632214 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-------E------CHHHHHHHHHHHHH-CCCCE Q ss_conf 1383000275638970358999999999970891670140488764-------2------06889999999996-69939 Q gi|254780676|r 195 NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-------E------TRNEILQLMDDLRT-ADVDF 260 (329) Q Consensus 195 NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-------E------t~eEi~e~l~DLr~-~gvdi 260 (329) - .++.+++.-|--.+ +.|+.+.+ +|.++|+- + |.+++++.+..+.+ .|.|. T Consensus 235 s--~~ral~~h~RNl~D-----e~ir~ia~--------~GGvIgi~~~~~fl~~~~~~~~t~~~~~~hi~~~~~~~G~dh 299 (417) T 3b40_A 235 S--APRALVDIKRNLSD-----HEMQLIKD--------SGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLPPLEGLDY 299 (417) T ss_dssp E--CBTTTSCCTTSBCH-----HHHHHHHH--------TTCEEEEECCHHHHSCCCHHHHHHHHHHHHHTTCCCCCSSTT T ss_pred C--CHHHHCCCCCCCCH-----HHHHHHHH--------CCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH T ss_conf 0--45652774346789-----99999997--------498899953467526776442346888887630132000012 Q ss_pred EECCHHCCCCC---------------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 97502227861---------------007800023846999999999974962434048 Q gi|254780676|r 261 LTMGQYLQPTR---------------KHHKVESFVTPQDFKSYETIAYSKGFLMVSASP 304 (329) Q Consensus 261 lTiGQYL~Ps~---------------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP 304 (329) +-||-=.-... ......+.++.++++.+--...-.|+.++..++ T Consensus 300 vgiGsD~dg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~~~n~l~~~~~~g~~s 358 (417) T 3b40_A 300 ALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGIDHVGISS 358 (417) T ss_dssp TSSCCCGGGGGSCHHHHHHHHHHHHHHHHTSCCCBHHHHHHHHHHHHHHHCGGGEEEEC T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEECC T ss_conf 10244420000056677787776543202478999999999999999963898436476 No 125 >>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} (A:) Probab=34.79 E-value=33 Score=15.55 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=59.3 Q ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCC--C-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHH Q ss_conf 998-888235799999999707751898505445--3-45325899999999998533586899815462--34468999 Q gi|254780676|r 109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRD--D-LDDGGAQHFAEVISAIRESAPSTTIEVLTPDF--LRKPHALE 182 (329) Q Consensus 109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RD--D-L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf--~G~~~al~ 182 (329) +|. |+-|+|-..-|.+..+-|-.-+=+- .|| | -+..-+..|+++|.+||+.+|. .|-+-+.-- ....+.+. T Consensus 24 ~P~lP~TpeEia~~a~~c~~AGAsivHlH--~Rd~~dG~~s~d~~~y~eii~~IR~~~d~-ii~~TTgg~~~~~~e~r~~ 100 (311) T 3e49_A 24 SPYLPVTPDEVAQASIGAAEAGAAVIHLH--ARDPRDGRPTQDPAAFAEFLPRIKSNTDA-VINLTTGGSPHXTVEERLR 100 (311) T ss_dssp CTTSCCSHHHHHHHHHHHHHHTCSEEEEC--EECTTTCCEECCHHHHTTHHHHHHHHCCC-EEEECSCSCTTSCHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCCCCCCHHHHHH T ss_conf 99998998999999999998187389977--35777799078999999999999860896-3540357888886677778 Q ss_pred HHHHCCCHHHHHCCCCC Q ss_conf 87410702332013830 Q gi|254780676|r 183 KVVSAKPDVFNHNLETV 199 (329) Q Consensus 183 ~v~~A~pdV~nHNiETV 199 (329) .+.+.+||.-.=|+-++ T Consensus 101 ~v~~~~Pd~aS~~~gs~ 117 (311) T 3e49_A 101 PATHYXPELASLNXGSX 117 (311) T ss_dssp HHHHHCCSEEEEECSCE T ss_pred HHHHHCCCEEECCCCCC T ss_conf 89874202331233566 No 126 >>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} (A:85-308,A:364-491) Probab=34.59 E-value=33 Score=15.53 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=11.9 Q ss_pred ECCCCC-CCCHHHHHHHHHHHHHHHHH Q ss_conf 404830-01031899999999998541 Q gi|254780676|r 301 SASPLT-RSSYHAGDDFLRLKNNRRQH 326 (329) Q Consensus 301 ~SgPlV-RSSY~A~e~~~~~~~~~~~~ 326 (329) ++.|+. =+|++-.|.-..+++.|++. T Consensus 282 ~~~p~~~f~~~~~~~l~~~~~~~r~~~ 308 (352) T 1eh9_A 282 EENPFYFFSDFSDSKLIQGVREGRKKE 308 (352) T ss_dssp CCCCCCCCCCCCSTTHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 998886510017787765435530566 No 127 >>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer, alpha-beta barrel; 2.50A {Thermoanaerobacter thermosulfurogenes} (A:) Probab=34.43 E-value=33 Score=15.55 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=99.6 Q ss_pred HHHHHHHHHHCCCCEEECCCC-------------------CCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 899999999749823652578-------------------8787675089726999866522353522344678998888 Q gi|254780676|r 54 YKETYNILRSRNLTTVCEEAG-------------------CPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLD 114 (329) Q Consensus 54 ~~~~~~~l~~~~L~TVCeeA~-------------------CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D 114 (329) ....-..+.+.+.+.|+=... ...+-+.-...--+...++..+.-.-.+. .+....+| T Consensus 82 ~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~i~~~~~~~~~~~~~~---~~~~~~~d 158 (438) T 1a0c_A 82 VEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFV---HGASTSCN 158 (438) T ss_dssp HHHHHHHHHHHTCSEEEEEHHHHSCCCSSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGT---TCSTTCSC T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCEE---CCCCCCCC T ss_conf 999999998718845760343348887747888999999999999988742970001126623211000---47666969 Q ss_pred HH-------HHHHHHHHHHHHCCCEEEEECCCCCCCCCC------HHHHHHHHHHHH----HHHCCCCEEEEECCCC--- Q ss_conf 23-------579999999970775189850544534532------589999999999----8533586899815462--- Q gi|254780676|r 115 PQ-------EPENISWAVRSMKLSHVVITSVDRDDLDDG------GAQHFAEVISAI----RESAPSTTIEVLTPDF--- 174 (329) Q Consensus 115 ~~-------EP~rvA~av~~l~Lk~vViTSV~RDDL~Dg------GA~hfa~~I~~I----r~~~P~~~IEvLiPDf--- 174 (329) +. .-.+..+..+.||.+++++-+-..+...+. +-..+++.++++ .+....+.+|.....+ T Consensus 159 ~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~~~i~~e~~~~~~~ 238 (438) T 1a0c_A 159 ADVFAYSAAQVKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPT 238 (438) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCCSCSSS T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC T ss_conf 89999999999999999998299889977887655676658999999999999999999877438770598724899876 Q ss_pred ----CCCH-HHHHHHHH-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-------CCCEEEEEEE Q ss_conf ----3446-89998741-070233201383000275638970358999999999970891670-------1404887642 Q gi|254780676|r 175 ----LRKP-HALEKVVS-AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT-------KSGIMLGLGE 241 (329) Q Consensus 175 ----~G~~-~al~~v~~-A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T-------KSGlMvGLGE 241 (329) .+.. +.++.+.+ ..+..+.=|++| ......+.+....++.+....... .+.. -...+++.|+ T Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~gl~lD~----gH~~~~g~d~~~~~~~l~~~~ri~-~vHl~D~~~~~~~~~~~~~g~ 313 (438) T 1a0c_A 239 KHQYDFDVANVLAFLRKYDLDKYFKVNIEA----NHATLAFHDFQHELRYARINGVLG-SIDANTGDMLLGWDTDQFPTD 313 (438) T ss_dssp SEESSCSHHHHHHHHHHTTCTTTEEEEEEH----HHHHHTTCCHHHHHHHHHHTTCEE-EEECCBCCTTSBSCCCBCCCC T ss_pred CCEECCCHHHHHHHHHHHCCHHHEEECCCC----CCCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCCCCCCCCCCCC T ss_conf 546548789999999983880435333323----401127899799999999779968-786589886778887838885 Q ss_pred CHHHHHHHHHHHHHCCCCE Q ss_conf 0688999999999669939 Q gi|254780676|r 242 TRNEILQLMDDLRTADVDF 260 (329) Q Consensus 242 t~eEi~e~l~DLr~~gvdi 260 (329) -..+....+.-|++.|-+- T Consensus 314 G~id~~~~~~~l~~~gy~g 332 (438) T 1a0c_A 314 IRMTTLAMYEVIKMGGFDK 332 (438) T ss_dssp HHHHHHHHHHHHHTTSCSS T ss_pred HHHHHHHHHHHHHHCCCCC T ss_conf 2999999999999569787 No 128 >>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} (A:1-337) Probab=34.35 E-value=33 Score=15.51 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=13.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 53258999999999985335868998 Q gi|254780676|r 144 DDGGAQHFAEVISAIRESAPSTTIEV 169 (329) Q Consensus 144 ~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329) .-|+-.-|.+-|++.+++.-.+.+.+ T Consensus 88 ~~Gt~~d~~~lv~~~H~~Gi~vi~D~ 113 (337) T 1gcy_A 88 RYGSDAQLRQAASALGGAGVKVLYDV 113 (337) T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 78999999999999988799899987 No 129 >>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} (A:) Probab=34.06 E-value=34 Score=15.47 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=60.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEC--CCCCCC-CCCHHHHHHHHH----HHHHHHCCCCEEEEECCCCCC------CHHHHH Q ss_conf 3579999999970775189850--544534-532589999999----999853358689981546234------468999 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITS--VDRDDL-DDGGAQHFAEVI----SAIRESAPSTTIEVLTPDFLR------KPHALE 182 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTS--V~RDDL-~DgGA~hfa~~I----~~Ir~~~P~~~IEvLiPDf~G------~~~al~ 182 (329) +.-.+..+.++.||.+++++.. ...... .+..-..+++.+ +..++..-...+|..-+.+.. ...++. T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gi~l~iE~~~~~~~~~~~~~~~~~~~~ 163 (284) T 3ju2_A 84 DDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQAL 163 (284) T ss_dssp HHHHHHHHHHHHHTBSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCCCHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 99999989999968984213331024678999999999999999999998750400110356564668721201699999 Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC---------CEEEEEEECHHHHHHHHHHH Q ss_conf 874107023320138300027563897035899999999997089167014---------04887642068899999999 Q gi|254780676|r 183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKS---------GIMLGLGETRNEILQLMDDL 253 (329) Q Consensus 183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKS---------GlMvGLGEt~eEi~e~l~DL 253 (329) .+.+.+.+-+.-++.+ +...+-+.+....+ ++..+..-..+.-|- +-.+-+|+-.-+....++.| T Consensus 164 ~~~~~~~~~vg~~~D~----~h~~~~g~~~~~~~--~~~~~~~i~~vHi~D~~~~~~~~~~~~~~~G~G~id~~~~~~~L 237 (284) T 3ju2_A 164 DICETLGPGVGVAIDV----YHVWWDPDLANQIA--RAGKMKAILAHHICDWLVPTKDMLTDRGMMGDGVIDLKGIRRRI 237 (284) T ss_dssp HHHHHHCTTEEEEEEH----HHHTTCTTHHHHHH--HHHHTTCEEEEEECBCCSSCCCSSSBCBCTTSSSCCHHHHHHHH T ss_pred HHHHHCCCCEEEEECC----HHHHHCCCCHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 8887427600355320----25541799689999--86413558999963566655334567778988314899999999 Q ss_pred HHCCCCE Q ss_conf 9669939 Q gi|254780676|r 254 RTADVDF 260 (329) Q Consensus 254 r~~gvdi 260 (329) ++.|.+. T Consensus 238 ~~~gy~g 244 (284) T 3ju2_A 238 EAAGFHG 244 (284) T ss_dssp HHTTCCC T ss_pred HHHCCCE T ss_conf 9819964 No 130 >>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:1-29,A:321-389) Probab=34.02 E-value=13 Score=18.33 Aligned_cols=38 Identities=24% Similarity=0.607 Sum_probs=32.9 Q ss_pred CCHHHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCC Q ss_conf 787675089726999--86652235352234467899888 Q gi|254780676|r 76 PNIGECWNKNHATFM--ILGAICTRACTFCNVATGKPQPL 113 (329) Q Consensus 76 PNi~ECw~~gtATFM--ilG~~CTR~C~FC~V~~G~P~~~ 113 (329) --|||=||+-...|+ +-|.-|.|.|=+--.-.|+|+.- T Consensus 25 ~r~genWSGYSGsFv~~~~g~~Ci~pCFyVELIRGrPkE~ 64 (98) T 1v0z_A 25 IRIGENWSGYSGAFIDYWANKECFNPCFYVELIRGRPKES 64 (98) T ss_dssp HHHHTEECCCEEEEECTTSSSSSBCEEEEEEEEEETTTCT T ss_pred EEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCC T ss_conf 6862888754137156761787642017999961788656 No 131 >>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} (A:1-130,A:202-404) Probab=33.80 E-value=34 Score=15.45 Aligned_cols=19 Identities=0% Similarity=-0.121 Sum_probs=10.5 Q ss_pred CHHHHHHHHHHHHHHCCCE Q ss_conf 8235799999999707751 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSH 132 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~ 132 (329) +.+|-+.+.++..+.|++- T Consensus 106 ~~~~~~~lv~~~h~~gi~v 124 (333) T 1qho_A 106 NWTTFDTLVNDAHQNGIKV 124 (333) T ss_dssp CHHHHHHHHHHHHHTTCEE T ss_pred CHHHHHHHHHHHHHCCCEE T ss_conf 9999999999999879999 No 132 >>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} (A:1-13,A:253-347) Probab=33.71 E-value=34 Score=15.44 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=41.2 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH---HCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 404887642068899999999966993997502---2278610078000238469999999 Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ---YLQPTRKHHKVESFVTPQDFKSYET 290 (329) Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ---YL~Ps~~h~pV~ryv~P~eF~~~~~ 290 (329) .|+|+|+....+.-......+++.|+-+...|. ++.|...+ +.++.++.=+ T Consensus 45 ~Gl~~~ie~~~~~a~~i~~~l~~~Gi~v~~~g~~~iRl~Ppl~i-------t~eeid~~l~ 98 (108) T 1jg8_A 45 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDV-------SRNDIEEALN 98 (108) T ss_dssp SEEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTS-------CHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CHHHHHHHHH T ss_conf 59999817975319999999997899895179898999889999-------9999999999 No 133 >>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} (A:36-342) Probab=33.63 E-value=34 Score=15.43 Aligned_cols=193 Identities=15% Similarity=0.077 Sum_probs=97.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCCCH-------HHHHHHHHHHHHHHCCCCEEEE---ECCCC-------- Q ss_conf 823579999999970775189850544-5345325-------8999999999985335868998---15462-------- Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDR-DDLDDGG-------AQHFAEVISAIRESAPSTTIEV---LTPDF-------- 174 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~R-DDL~DgG-------A~hfa~~I~~Ir~~~P~~~IEv---LiPDf-------- 174 (329) -.++-.+.++-...+|++.|.+-.|.- .+++|.- -+...+.|++||+..|+..|=+ |.|=- T Consensus 32 sid~l~~~~~~~~~~Gi~~v~lFgv~~~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~ii~Dvclc~YT~hGHcGil 111 (307) T 1h7n_A 32 GVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVL 111 (307) T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCB T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 89999999999998699979966878874334778835428766899999999813887089964356867788871235 Q ss_pred --CC---CHHHHHHH-------HHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH-------------------- Q ss_conf --34---46899987-------41070233201383000275638970358999999999-------------------- Q gi|254780676|r 175 --LR---KPHALEKV-------VSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRV-------------------- 222 (329) Q Consensus 175 --~G---~~~al~~v-------~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~a-------------------- 222 (329) .| |...|+.+ .+||.|+++ |..--+-+...+|.+ T Consensus 112 ~~~g~idNd~Tl~~la~~Al~~A~AGaDiVA--------------PSdMMDGrV~aIR~aLd~~g~~~~v~ImSYsaKya 177 (307) T 1h7n_A 112 YDDGTINRERSVSRLAAVAVNYAKAGAHCVA--------------PSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFS 177 (307) T ss_dssp CTTSSBCHHHHHHHHHHHHHHHHHHTCSEEE--------------ECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEC--------------CCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHC T ss_conf 5987547099999999999999981898650--------------00466888999999999837986651210234330 Q ss_pred ----------HHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCC---CC-CC--CCCCCCCCCHH Q ss_conf ----------97089167014048876420688999999999669939975---02227---86-10--07800023846 Q gi|254780676|r 223 ----------KELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQ---PT-RK--HHKVESFVTPQ 283 (329) Q Consensus 223 ----------K~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~---Ps-~~--h~pV~ryv~P~ 283 (329) -...|..--|++--+--+-..|-+.++..|+.+ |.|+|-+ .-||- -- .+ .+||.-|---. T Consensus 178 S~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~E-GAD~iMVKPal~YLDii~~~k~~~~~~Pv~aYqVSG 256 (307) T 1h7n_A 178 GNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSE-GADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSG 256 (307) T ss_dssp SSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHHHHHHHT-TCSEEEEESSGGGHHHHHHHHHHTTTSCEEEEECHH T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 1245558999750325788761127999879999999961764-997698547723899999999856799869997207 Q ss_pred HHHHHHHHHHH--CCCCEE---------ECCCCCCCCHHHHHHHHHHHH Q ss_conf 99999999997--496243---------404830010318999999999 Q gi|254780676|r 284 DFKSYETIAYS--KGFLMV---------SASPLTRSSYHAGDDFLRLKN 321 (329) Q Consensus 284 eF~~~~~~a~~--~Gf~~V---------~SgPlVRSSY~A~e~~~~~~~ 321 (329) ||..++.-|.. +-.+.+ .+|-=.=-+|+|.+...-+.+ T Consensus 257 EYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L~~ 305 (307) T 1h7n_A 257 EYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE 305 (307) T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETTHHHHHHHTTC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH T ss_conf 8999999998699758889999999998608988986039999998754 No 134 >>2ka6_B Signal transducer and activator of transcription 1-alpha/beta; CBP/P300, TAZ2, STAT1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens} (B:) Probab=33.01 E-value=26 Score=16.29 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=21.6 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC Q ss_conf 278610078000238469999999999749624340 Q gi|254780676|r 267 LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA 302 (329) Q Consensus 267 L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S 302 (329) ||-+.+-+|. +|++|++++++--..-|..|.| T Consensus 12 LQ~~dNllPM----SPdef~e~~r~Vgp~e~d~vm~ 43 (45) T 2ka6_B 12 LQTTDNLLPM----SPEEFDEVSRIVGSVEFDSMMN 43 (45) T ss_dssp CCSTTSCCCS----CHHHHHHHHHHHTTTTGGGTTT T ss_pred HCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHH T ss_conf 2563346778----8889999998707398998985 No 135 >>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} (A:) Probab=32.68 E-value=36 Score=15.32 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=20.5 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH Q ss_conf 882357999999997077518985054453453258 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA 148 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA 148 (329) ....|-...|+.++.+|...++++...-=.+.+.+. T Consensus 86 ~s~~~~i~~a~~a~~~Gad~v~v~pP~~~~~~~~~i 121 (297) T 3flu_A 86 NNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGI 121 (297) T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH T ss_conf 329999999999998098854733787889899999 No 136 >>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} (A:) Probab=32.67 E-value=36 Score=15.32 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=27.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 5445345325899999999998533586899815 Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT 171 (329) Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi 171 (329) -+|||+-..-+..+.+.+++|++.+|+..+=+.+ T Consensus 91 ~~r~d~~~~n~~i~~~i~~~i~~~~p~~~~ivvs 124 (319) T 1lld_A 91 QSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 8867876666999999999886428873999738 No 137 >>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:1-70,A:167-346) Probab=32.58 E-value=36 Score=15.31 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=91.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCC--------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC Q ss_conf 54453453258999999999985335868998-1546234--------46899987410702332013830002756389 Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLR--------KPHALEKVVSAKPDVFNHNLETVASNYLMVRP 208 (329) Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G--------~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp 208 (329) |.|=++..|...-+.+.++.||+........+ +.-|.+| +.+.|+.++..++|.+.- +.|+. T Consensus 30 ~~R~N~sh~~~~~~~~~~~~~r~~~~~~~~~~~i~~dl~Gpl~~lT~~d~~Dl~~~~~~~vD~I~l---------pkV~s 100 (250) T 1e0t_A 30 VMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPLPALAEKDKQDLIFGCEQGVDFVAA---------SFIRK 100 (250) T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCCSSCHHHHHHHHHHHHHTCSEEEE---------SSCCS T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE---------CCCCC T ss_conf 999988999999999999999999997099769999688988899988999999998749999998---------78799 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEE-----------------CCCEEEEEEECHHH--------HHHHH-HHHHHCCCCEEE Q ss_conf 70358999999999970891670-----------------14048876420688--------99999-999966993997 Q gi|254780676|r 209 GARYFHSLRLLQRVKELDPLIFT-----------------KSGIMLGLGETRNE--------ILQLM-DDLRTADVDFLT 262 (329) Q Consensus 209 ~a~Y~rSL~vL~~aK~~~~~i~T-----------------KSGlMvGLGEt~eE--------i~e~l-~DLr~~gvdilT 262 (329) ..+-+.=-++|+.....+..|.. --|+|+|-|.---| +.+.+ .--+.++.-.++ T Consensus 101 a~dI~~v~~~l~~~g~~~~~IiakIEt~~gv~nl~eI~~~sdgi~igrgDL~~~l~~e~~~~~q~~ii~~~~~~~~~~~~ 180 (250) T 1e0t_A 101 RSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT 180 (250) T ss_dssp HHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 99999999999870799871899865987876799999756789997687545579888599999999999984998899 Q ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-CCCCCCCCHHHHH Q ss_conf 502227861007800023846999999999974962434-0483001031899 Q gi|254780676|r 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS-ASPLTRSSYHAGD 314 (329) Q Consensus 263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~-SgPlVRSSY~A~e 314 (329) -.|.|.- +...+.+.+-|...-..|..+||..+. ++|=--..|-.++ T Consensus 181 ~t~~lds-----m~~~~~~t~ae~~dv~~a~~~G~dg~~lihptqig~~p~e~ 228 (250) T 1e0t_A 181 ATMMLDS-----MIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEA 228 (250) T ss_dssp ECC--------------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHH T ss_pred ECCCHHH-----HHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH T ss_conf 6810776-----62189996188888999987279789977874587588999 No 138 >>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} (A:1-344) Probab=32.10 E-value=36 Score=15.26 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=12.5 Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 3258999999999985335868998 Q gi|254780676|r 145 DGGAQHFAEVISAIRESAPSTTIEV 169 (329) Q Consensus 145 DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329) =|+.+-|.+-|++.++..=.+.+.+ T Consensus 71 ~Gt~~~fk~Lv~~~H~~Gi~VilD~ 95 (344) T 1ua7_A 71 LGTEQEFKEMCAAAEEYGIKVIVDA 95 (344) T ss_dssp TEEHHHHHHHHHHHHTTTCEEEEEE T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 8999999999999865688799985 No 139 >>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} (A:1-343) Probab=32.01 E-value=36 Score=15.25 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=69.9 Q ss_pred CCCCCHHHHH-------HHHHHHHHHCCCEEEEE--------------CCCCCCCCCCH-----HHHHHHHHHHHHHHCC Q ss_conf 9888823579-------99999997077518985--------------05445345325-----8999999999985335 Q gi|254780676|r 110 PQPLDPQEPE-------NISWAVRSMKLSHVVIT--------------SVDRDDLDDGG-----AQHFAEVISAIRESAP 163 (329) Q Consensus 110 P~~~D~~EP~-------rvA~av~~l~Lk~vViT--------------SV~RDDL~DgG-----A~hfa~~I~~Ir~~~P 163 (329) |.++...|-. +-|..+++.|..-|-|- +-.|.|-- || +....++|++||+..+ T Consensus 136 ~~~l~~~~i~~i~~~f~~aA~~a~~aG~DgVei~~~~g~L~~qFlsp~~n~r~d~y-Ggsl~nr~r~~~eii~air~~~~ 214 (343) T 1o94_A 136 CKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKY-GGSLENRARFWLETLEKVKHAVG 214 (343) T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTT-SSSHHHHTHHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 86699999999999999999999970978899731756568864076378996435-78856651789999998885508 Q ss_pred -CCEEEEEC--CCCC--C------CHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHCCCEEE Q ss_conf -86899815--4623--4------468999874107023320138300-02756389-7035899999999997089167 Q gi|254780676|r 164 -STTIEVLT--PDFL--R------KPHALEKVVSAKPDVFNHNLETVA-SNYLMVRP-GARYFHSLRLLQRVKELDPLIF 230 (329) Q Consensus 164 -~~~IEvLi--PDf~--G------~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~ 230 (329) ...|-+-+ .|.. | -.+..+.+.+++.|.+.--.-+.. +-.....+ ......-+++.+.+|.....-+ T Consensus 215 ~~~~V~iR~~~~d~~~~g~~~~e~~~~~~~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pv 294 (343) T 1o94_A 215 SDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPV 294 (343) T ss_dssp TTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCE T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 98658999743005589977566778999999984444424134652232335566545664444047999876417852 Q ss_pred ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 0140488764206889999999996699399750222 Q gi|254780676|r 231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) ++.|---+.++..++ |.+-+||++-+|.-+ T Consensus 295 ----i~~G~i~s~~~~~~~---l~~g~~D~V~~gR~~ 324 (343) T 1o94_A 295 ----LGVGRYTDPEKMIEI---VTKGYADIIGCARPS 324 (343) T ss_dssp ----ECCSCCCCHHHHHHH---HHTTSCSBEEESHHH T ss_pred ----CCCCCCCCHHHHHHH---HHCCCCCEEECCHHH T ss_conf ----145896899999999---987998746305698 No 140 >>1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e} (A:) Probab=31.97 E-value=36 Score=15.24 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=29.3 Q ss_pred CCEEEEEE---------ECHHHHHHHHHHHH-HCCCCEEECCHHCCCC--CCCCCCCCCCCHHH-HHHHHHH Q ss_conf 40488764---------20688999999999-6699399750222786--10078000238469-9999999 Q gi|254780676|r 233 SGIMLGLG---------ETRNEILQLMDDLR-TADVDFLTMGQYLQPT--RKHHKVESFVTPQD-FKSYETI 291 (329) Q Consensus 233 SGlMvGLG---------Et~eEi~e~l~DLr-~~gvdilTiGQYL~Ps--~~h~pV~ryv~P~e-F~~~~~~ 291 (329) ++-.+++| |+.|++.+.++.+. .++.+.+- +.|+ -.|.|...+.+++. ++.++.. T Consensus 290 ~~k~l~~GvVd~r~~~~e~~e~~~~~i~~~~~~~~~~~~~----vsp~Cgl~~~p~~~~l~~~~a~~KL~~~ 357 (375) T 1ypx_A 290 PDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLR----LSPQCGFASTEEGNILTEEEQWDKLRYV 357 (375) T ss_dssp TTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEE----EEESSCCC--------CHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHEE----EECCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 8829997688689897699999999999999838887799----8278898877667889999999999999 No 141 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387) Probab=31.63 E-value=37 Score=15.20 Aligned_cols=129 Identities=10% Similarity=0.066 Sum_probs=79.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--EE-CCCCCCCHHHHHHHHHCCCHHH Q ss_conf 35799999999707751898505445345325899999999998533586899--81-5462344689998741070233 Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE--VL-TPDFLRKPHALEKVVSAKPDVF 192 (329) Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE--vL-iPDf~G~~~al~~v~~A~pdV~ 192 (329) ....-+++.++.++.+.|+|-..| .+.|-+......+.+.+....+.+. +- -+...--...+.++.+++||++ T Consensus 4 ~qa~ala~~l~~~g~kkVaII~~d----~~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~~~~~d~~~~i~kik~a~pdvV 79 (200) T 3i45_A 4 MQAAMLAAEAAKLPITRWATIAPN----YEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGL 79 (200) T ss_dssp HHHHHHHHHHTTSSCCEEEEECCS----SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEE T ss_pred HHHHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEE T ss_conf 899999999886287178544789----6788999998887775236613688766402665116789888886098389 Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 201383000275638970358999999999970891670140488764206889999999996699399750222 Q gi|254780676|r 193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) =. .........+++.+++.|. .-+.-++.+.+=..+++.....+ ..-.++.+..|. T Consensus 80 i~--------------~~~~~~a~~~ikqa~~~Gl--~~~~~ii~~~~~~~~~l~~~~g~---a~eGvi~~~~~~ 135 (200) T 3i45_A 80 FN--------------VLFGADLPKFVREGRVRGL--FAGRQVVSMLTGEPEYLNPLKDE---APEGWIVTGYPW 135 (200) T ss_dssp EE--------------CCCTTHHHHHHHHHHHHTS--STTCEEEEEEEESHHHHGGGGGG---CCSSCEEEECCG T ss_pred EE--------------EECCHHHHHHHHHHHHHCC--CCCCCEEEECCCCHHHHHHHHHH---HCCCCEEEEECC T ss_conf 99--------------9333789999999998188--76760343024570443321112---126857973156 No 142 >>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:1-110,A:153-365) Probab=31.62 E-value=37 Score=15.20 Aligned_cols=85 Identities=9% Similarity=-0.054 Sum_probs=41.4 Q ss_pred HHHHHHHHCCCHHHHHCCCC--------CCCCCCCCCC---CCHHHHH----HHHHHHHHHCCCE----EEECCCEEEEE Q ss_conf 89998741070233201383--------0002756389---7035899----9999999970891----67014048876 Q gi|254780676|r 179 HALEKVVSAKPDVFNHNLET--------VASNYLMVRP---GARYFHS----LRLLQRVKELDPL----IFTKSGIMLGL 239 (329) Q Consensus 179 ~al~~v~~A~pdV~nHNiET--------V~rLy~~VRp---~a~Y~rS----L~vL~~aK~~~~~----i~TKSGlMvGL 239 (329) .+.+...++|-|.+.=|.-- .| ...+|. +++..+. +++++.+++.-+. +.-..-.-++- T Consensus 123 ~AA~~a~~aGfDgVeIn~ghgyL~~qFlcP--~~n~r~d~yGgsl~~r~r~~~eii~avr~~v~~~~v~vris~~~~~~~ 200 (323) T 2gou_A 123 QAALNAMEAGFDGIELHAANGYLINQFIDS--EANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNG 200 (323) T ss_dssp HHHHHHHHTTCSEEEEECCTTSHHHHHHSG--GGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTS T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC T ss_conf 999999982998899814604489998887--647776545640556678999998888864388665405214123479 Q ss_pred EECHHHHHHHHHHHHHCCCCEEECCH Q ss_conf 42068899999999966993997502 Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTMGQ 265 (329) Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTiGQ 265 (329) |.+.+|..+.+.-|.+.|+|.|++.- T Consensus 201 ~~~~~e~~~~~~~l~~~g~d~i~v~~ 226 (323) T 2gou_A 201 TVDADPILTYTAAAALLNKHRIVYLH 226 (323) T ss_dssp CCCSSHHHHHHHHHHHHHHTTCSEEE T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 76553056778999876415840785 No 143 >>3e02_A Uncharacterized protein DUF849; YP_555544.1, protein of unknown function (DUF849), structural genomics; HET: MSE; 1.90A {Burkholderia xenovorans LB400} (A:) Probab=31.43 E-value=37 Score=15.18 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=90.1 Q ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHH Q ss_conf 998-8882357999999997077518985054453---4532589999999999853358689981546234---46899 Q gi|254780676|r 109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD---LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHAL 181 (329) Q Consensus 109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD---L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al 181 (329) +|. |+-|+|-..-|.+..+-|-.-|=+ -.||+ -+..-+..|+++|.+||+.+|.+ |-+ +-...+ -.+.+ T Consensus 24 ~P~lP~TpeEia~~a~~c~~AGAsivHl--H~Rd~~dG~~s~d~~~y~e~i~~IR~~~~~i-i~~-Ttg~~~~~~~~~R~ 99 (311) T 3e02_A 24 SPYLPITPEEIVKEGVAAAEAGAAXLHL--HARDPLNGRPSQDPDLFXRFLPQLKERTDAI-LNI-TTGGGLGXSLDERL 99 (311) T ss_dssp CTTSCCSHHHHHHHHHHHHHHTCSEEEE--CEECTTTCCEECCHHHHTTTHHHHHHHCCCE-EEE-CSSCSTTCCHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEE-ECCCCCCCCCHHHH T ss_conf 9999899899999999999828748998--8558989890689999999999999759935-875-21577887620246 Q ss_pred HHHHHCCCHHHHHCCCCCCCCC-CCCCC-----------------CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECH Q ss_conf 9874107023320138300027-56389-----------------70358999999999970891670140488764206 Q gi|254780676|r 182 EKVVSAKPDVFNHNLETVASNY-LMVRP-----------------GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETR 243 (329) Q Consensus 182 ~~v~~A~pdV~nHNiETV~rLy-~~VRp-----------------~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~ 243 (329) ..|..-+||.-.=|+-++---. ...+. ..-|..+.+.+++.-+ ...+.|+..-+.=-+ T Consensus 100 ~~i~~l~Pd~aS~~~gs~n~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~n~~~~~~~~~~----~~~e~gi~pe~e~~d 175 (311) T 3e02_A 100 APARAARPEVASXNXGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGXT----ELGASGTRFEFECYD 175 (311) T ss_dssp HHHHHHCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHH----HHHTTTCEEEEEECS T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHH----HHHHCCCCCEEEEEC T ss_conf 6665348875640003446663000000112044202333256656153389999999999----998628864389727 Q ss_pred HHHHHHHHHHHHCCC-------CE-EECCHHCCCCCCCC Q ss_conf 889999999996699-------39-97502227861007 Q gi|254780676|r 244 NEILQLMDDLRTADV-------DF-LTMGQYLQPTRKHH 274 (329) Q Consensus 244 eEi~e~l~DLr~~gv-------di-lTiGQYL~Ps~~h~ 274 (329) -..+..+..|.+-|. .+ +....++++++..+ T Consensus 176 ~g~i~~~~~l~~~G~l~~p~~~~~vlG~~~g~~a~p~~l 214 (311) T 3e02_A 176 VGHLYNLAHFVDRKLVEPPFFLQCVFGILGGIGADPENL 214 (311) T ss_dssp HHHHHHHHHHHHTTSSCSCEEEEEEECCBTSCCSCHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH T ss_conf 999999999997178789965499981577778880569 No 144 >>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} (A:1-345) Probab=31.12 E-value=38 Score=15.15 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=48.7 Q ss_pred CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHC Q ss_conf 8668999999997498236525788787675089726999866522353522344678998-888235799999999707 Q gi|254780676|r 51 SSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQ-PLDPQEPENISWAVRSMK 129 (329) Q Consensus 51 ~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~-~~D~~EP~rvA~av~~l~ 129 (329) .-...+.-+.+++.+.++|+=.+++=+-.--|...... ++...+..|. .-|+. ..+++|+++.| T Consensus 58 ~fd~~~~v~~~k~aG~~~vvl~~khh~G~~lypS~~~~-------------~~~~~~~~~~~~~D~l--~~lv~a~~k~G 122 (345) T 3gza_A 58 ELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNP-------------YCLKAVKWRDGKGDIV--RDFVNSCRKYG 122 (345) T ss_dssp TCCHHHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCS-------------SBGGGSSGGGGTCCHH--HHHHHHHHHHT T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCHH--HHHHHHHHHCC T ss_conf 18999999999985997899702006875574899999-------------7755576768875579--99999986559 Q ss_pred CCEEEEECCCCCCCCC Q ss_conf 7518985054453453 Q gi|254780676|r 130 LSHVVITSVDRDDLDD 145 (329) Q Consensus 130 Lk~vViTSV~RDDL~D 145 (329) |+..+=.|+.++-... T Consensus 123 ik~~~y~s~~~~~~~~ 138 (345) T 3gza_A 123 LQPGIYIGIRWNSLLG 138 (345) T ss_dssp CEEEEEECCSCBTTTT T ss_pred CCEEEEEECCCCCCCC T ss_conf 7358998321257554 No 145 >>2vxh_A Chlorite dismutase; heme-based enzyme, azospira oryzae strain GR-1, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.1A {Azospira oryzae} (A:) Probab=30.74 E-value=38 Score=15.10 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=40.3 Q ss_pred CCCEEEE-EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-----CEEEC Q ss_conf 1404887-64206889999999996699399750222786100780---002384699999999997496-----24340 Q gi|254780676|r 232 KSGIMLG-LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV---ESFVTPQDFKSYETIAYSKGF-----LMVSA 302 (329) Q Consensus 232 KSGlMvG-LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV---~ryv~P~eF~~~~~~a~~~Gf-----~~V~S 302 (329) |+.||+= +|++.+++-++..+|+..+ ||+||.|+...+-| .+|+...+-..+..-....++ +++.- T Consensus 75 ~aDlm~w~~~~~~~~lq~~~~~l~~t~-----lg~~l~~~~s~~sv~~~s~Y~~~~~~~~~~~~~~~~~~~~p~~~y~~~ 149 (251) T 2vxh_A 75 NSDFFFRINAYDLAKAQTFMREFRSTT-----IGKNADVFETLVGVTKPLNYISKDKSPGLNAGLSSATYSGPAPRYVIV 149 (251) T ss_dssp SCSEEEEEEESSHHHHHHHHHHHHTST-----TGGGEEEEEEEEEECCCCSSSSTTTCHHHHHHHHHCCCCSSCCCEEEE T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCC-----CCCCCCCEEEEEEEECCHHCCCCCCCHHHHCCCCCCCCCCCCCCEEEE T ss_conf 778899994899999999999998533-----646341024567751222025788982341367656789998777999 Q ss_pred CCCCCCC Q ss_conf 4830010 Q gi|254780676|r 303 SPLTRSS 309 (329) Q Consensus 303 gPlVRSS 309 (329) =|++||- T Consensus 150 YPm~Ks~ 156 (251) T 2vxh_A 150 IPVKKNA 156 (251) T ss_dssp EEECCCH T ss_pred EECCCCH T ss_conf 9678881 No 146 >>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, asymmetric loop, 7S RNA; 3.20A {Sulfolobus solfataricus} (A:) Probab=30.65 E-value=38 Score=15.10 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=23.3 Q ss_pred CCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 6789--9888823579999999970775189850 Q gi|254780676|r 106 ATGK--PQPLDPQEPENISWAVRSMKLSHVVITS 137 (329) Q Consensus 106 ~~G~--P~~~D~~EP~rvA~av~~l~Lk~vViTS 137 (329) ..|+ |..++---...+++|++.|||++++-.+ T Consensus 32 ~eGRrv~kaV~~P~~~EI~~a~~~Lgl~~~~e~~ 65 (109) T 3ktw_A 32 SKGRRLARIPYKIKTEELVSTLRELGLDPIVIEN 65 (109) T ss_dssp GGTCCSSCCSSCCCHHHHHHHHHHTTCCCEEECS T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 3167153212898999999999984998587038 No 147 >>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris CGA009} (A:165-452) Probab=30.51 E-value=22 Score=16.76 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=85.1 Q ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCHHHHHHHH----HHHHHHHCCCC---EE--EEECCCCCC Q ss_conf 998-8882357999999997077518985054453--453258999999----99998533586---89--981546234 Q gi|254780676|r 109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD--LDDGGAQHFAEV----ISAIRESAPST---TI--EVLTPDFLR 176 (329) Q Consensus 109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD--L~DgGA~hfa~~----I~~Ir~~~P~~---~I--EvLiPDf~G 176 (329) ||. .+.++|-.+++.....=|+..+ .|| |.|.--..|.+. .++|++.+-+| ++ =-++-|..- T Consensus 28 KP~~Gls~~~~a~~~y~~~~GG~D~i------KDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~lYa~NiTg~~~e 101 (288) T 2qyg_A 28 KPNIGLPPQPFAELGYQSWTGGLDIA------KDDEMLADVDWCPLAERAALLGDACRRASAETGVPKIYLANITDEVDR 101 (288) T ss_dssp SSCTTCCSHHHHHHHHHHHHHTCSEE------ECCTTCCSCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCCTTH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH T ss_conf 88788998999999999986379810------378566797888699999999999999999859710475026888999 Q ss_pred CHHHHHHHHHCCCHHHHHCCC--------CCCCCCCCC----CCCC-HHHH------HHHHHHHH-HHCCCEEEECCCEE Q ss_conf 468999874107023320138--------300027563----8970-3589------99999999-97089167014048 Q gi|254780676|r 177 KPHALEKVVSAKPDVFNHNLE--------TVASNYLMV----RPGA-RYFH------SLRLLQRV-KELDPLIFTKSGIM 236 (329) Q Consensus 177 ~~~al~~v~~A~pdV~nHNiE--------TV~rLy~~V----Rp~a-~Y~r------SL~vL~~a-K~~~~~i~TKSGlM 236 (329) -.+..+.+.++|...+=+|.- +.++-+... |-.+ .|.| |-.||... +-+|.+..-=.+.= T Consensus 102 m~~ra~~a~~~G~~~vmi~~~~~G~~al~~L~~~~~l~ihaHrA~~ga~~r~~~~Gis~~vl~kl~RLaGaD~i~~~~~~ 181 (288) T 2qyg_A 102 LTELHDVAVANGAGALLINAMPVGLSAVRMLRKHATVPLIAHFPFIAAFSRLANYGIHSRVMTRLQRLAGFDVVIMPGFG 181 (288) T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHCHHHHHHHHTTCCSCEEEECTTHHHHHSCTTSEECHHHHHHHHHHHTCSEEEECCSS T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCC T ss_conf 99999879872994899936553579999998608864576155530113687885719999999998188812416887 Q ss_pred EEEEECHHHHHHHHHHHHH Q ss_conf 8764206889999999996 Q gi|254780676|r 237 LGLGETRNEILQLMDDLRT 255 (329) Q Consensus 237 vGLGEt~eEi~e~l~DLr~ 255 (329) -.++++++++.+.+..++. T Consensus 182 g~~~~~~~~~~~~~~~~~~ 200 (288) T 2qyg_A 182 PRMMTPEHEVLDCIRACLE 200 (288) T ss_dssp GGGCCCHHHHHHHHHHHHS T ss_pred CCCCCCHHHHHHHHHHHHC T ss_conf 7746675777889998726 No 148 >>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} (A:86-350) Probab=30.40 E-value=39 Score=15.07 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=73.0 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHCCCHH Q ss_conf 88235799999999707751898505445345325899999999998533586899815-46234468999874107023 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDV 191 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi-PDf~G~~~al~~v~~A~pdV 191 (329) -|.+--...+++.++.|...|-+..-+-++.+.+=..+-.+..+++++..-+..+.+.+ +-|..+.+.+.... T Consensus 32 ~~~e~~~~~i~~l~~aG~~~vr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~i~~~~~~~~l~~~~------ 105 (265) T 1vr6_A 32 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYA------ 105 (265) T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHC------ T ss_pred CCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCEE------ T ss_conf 98999999999988707000244110412245435685588888888677535972488623134456563122------ Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 32013830002756389703589999999999708916701404887642068899999999966993 Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD 259 (329) Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329) ..+|-.+.=-.....|+.+...+.-+ .+..|++-+.+|....++-+.+.|.+ T Consensus 106 ------------d~ikI~s~~~~n~~ll~~~a~~~~pv----~i~~~~~~~~~~~~~a~~~~~~~g~~ 157 (265) T 1vr6_A 106 ------------DIIQIGARNAQNFRLLSKAGSYNKPV----LLKRGFMNTIEEFLLSAEYIANSGNT 157 (265) T ss_dssp ------------SEEEECGGGTTCHHHHHHHHTTCSCE----EEECCTTCCHHHHHHHHHHHHHTTCC T ss_pred ------------EEEEECHHHCCCHHHHHHHHCCCCCE----EECCCCCCCHHHHHHHHHHHHCCCCC T ss_conf ------------57997512215689999863468748----96175443255544568988705986 No 149 >>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} (A:292-491) Probab=30.00 E-value=39 Score=15.02 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=36.0 Q ss_pred CHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE------EEEECCCCCCCCC Q ss_conf 87675089726999866522353522344678998888235799999999707751------8985054453453 Q gi|254780676|r 77 NIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSH------VVITSVDRDDLDD 145 (329) Q Consensus 77 Ni~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~------vViTSV~RDDL~D 145 (329) +-++|...| ||-|||.. +--|-.-|..=-.-|.+++++|+|.+ +-|++||--.|+. T Consensus 27 ~~~~~~~AG--~F~VLGG~-----------~EMpW~FdRlykydIT~~l~~l~l~~d~f~i~~~i~~vnGt~l~s 88 (200) T 3l6w_A 27 TDSDDEYAG--SFVILGGA-----------KEMPWAYERLYRFDITETVHNLNLTDDHVKFRFDLKKYDHTELDA 88 (200) T ss_pred CCCCCCEEE--EEEEECCC-----------CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCC T ss_conf 888753421--89980487-----------567634474110017999998499976648999999418957865 No 150 >>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* (A:1-391) Probab=29.51 E-value=18 Score=17.47 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=101.3 Q ss_pred CCCCCHHHCC-----------CCCCCHHH----HHHHHHHH---HCCCCEEEC-CCCCCCHHHHHC----C--------- Q ss_conf 8898824500-----------17998668----99999999---749823652-578878767508----9--------- Q gi|254780676|r 37 KMQKPDWIRV-----------RAPVSSGY----KETYNILR---SRNLTTVCE-EAGCPNIGECWN----K--------- 84 (329) Q Consensus 37 ~~~kP~Wlk~-----------~~p~~~~~----~~~~~~l~---~~~L~TVCe-eA~CPNi~ECw~----~--------- 84 (329) ..++|.||+- +++. +.+ .+++..+. +.+|.-|+. |-+.++...=+. + T Consensus 39 S~Prp~~l~el~~a~e~~~~g~~~~-~~l~~~~~ai~~~v~~q~~aGidvitdGe~~~~d~~~~~~~~l~g~~~~~~~~~ 117 (391) T 1t7l_A 39 GFPKIGEKREFKKALEDFWKGKITE-EQFEEEMNKLRMYMVENYRKNVDVIPSNELSYYDFVLDTAVMVGAVPERFGEYR 117 (391) T ss_dssp CCCSSCTTCHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHHHHHHHCSSCEESCCCSSCHHHHHHHHTTCCCGGGCSCC T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 6888898748999999997799999-999999999999999999859985376886207589999998099763247788 Q ss_pred -----------CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-EEEEECC-------------- Q ss_conf -----------72699986652235352234467899888823579999999970775-1898505-------------- Q gi|254780676|r 85 -----------NHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS-HVVITSV-------------- 138 (329) Q Consensus 85 -----------gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk-~vViTSV-------------- 138 (329) .++..| .....|+.....-.-.+.+..++...........+..+.. -++|||. T Consensus 118 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~a~~~~~~vK~~l~GP~tl~~~~~~~~~~~ 196 (391) T 1t7l_A 118 GLSTYFDMARGGKALEM-TKFFNTNYHYLVPEIETEEFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEWI 196 (391) T ss_dssp SHHHHHHHHSSTTCCEE-EECTTSSCEEEECBCCCSCCCCSCCHHHHHHHHHHTTTCCCEEEEECHHHHHHTCEETTEEC T ss_pred CHHHCCHHCCCCCHHHH-CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCC T ss_conf 73230201278640220-01026776712342379863567773199999998679987258857699999864554443 Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----HHHHHHHHHCC------CHHHHHCCCCCCCCC Q ss_conf ----445345325899999999998533586899815462344-----68999874107------023320138300027 Q gi|254780676|r 139 ----DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-----PHALEKVVSAK------PDVFNHNLETVASNY 203 (329) Q Consensus 139 ----~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-----~~al~~v~~A~------pdV~nHNiETV~rLy 203 (329) ++.||-+.-|..+.+-|+++.+.--. .|.+-=|-+... .+++..+.+.- .+++.+|.+-.+.+. T Consensus 197 ~~y~~~~el~~~la~~~~~ei~~L~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~v~vh~c~~~~~~~~~l~ 275 (391) T 1t7l_A 197 RRPNQMEKLLESLVSVYKEVFEKLVENGCK-EILVNEPAFVCDLEKAHWDLILNVYRELSEFPLTVFTYYDSVSDYEACV 275 (391) T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CEEEECGGGGSCCBHHHHHHHHHHHHTTTTSCEEEECCSSCCSCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEECCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH T ss_conf 445699999999999999999999967997-8995786242368999999999999985228889988887677789996 Q ss_pred CCCCC--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE---------ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC Q ss_conf 56389--70358999999999970891670140488764---------20688999999999669939975022278610 Q gi|254780676|r 204 LMVRP--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLG---------ETRNEILQLMDDLRTADVDFLTMGQYLQPTRK 272 (329) Q Consensus 204 ~~VRp--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG---------Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~ 272 (329) ..=-. .-+|.++-.-+....... +. ++-.+|+| |+.|||.+.++.+. --+++=.=.|.+.+. T Consensus 276 ~~~vd~l~le~~~~~~~~~~~~~~~--~~--~~k~i~~GvVd~~~~~~E~~eev~~ri~~~e---~l~vspdCGl~~lp~ 348 (391) T 1t7l_A 276 SLPVKRLHFDFVSNEENLKNLEKHG--FP--EDKKLVAGVINGRQPWKVDLRKVASLVEKLG---ASAISNSCPLFHLPV 348 (391) T ss_dssp TSSCSEEEEECSSCSHHHHHHHHHC--CC--TTSEEEEEEECSSCCBCCCHHHHHHHHHHHT---CSEEEESSCGGGSCS T ss_pred CCCCCEEEEECCCCHHHHHHHHHCC--CC--CCCEEEEEEECCCCHHHCCHHHHHHHHHHHH---CCCCCCCCCCCCCCC T ss_conf 4886569752357877799999626--98--7737887665375030049999999999854---531468876523885 Q ss_pred CCCCCCCCCH Q ss_conf 0780002384 Q gi|254780676|r 273 HHKVESFVTP 282 (329) Q Consensus 273 h~pV~ryv~P 282 (329) .........+ T Consensus 349 ~~~~~~~~~~ 358 (391) T 1t7l_A 349 TLELENNLPG 358 (391) T ss_dssp CSTTCCSSST T ss_pred CCCCCCCCCH T ss_conf 4655668997 No 151 >>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} (A:) Probab=29.37 E-value=40 Score=14.95 Aligned_cols=189 Identities=12% Similarity=-0.010 Sum_probs=81.8 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHHHHHCCC Q ss_conf 88235799999999707751898505445345325899999999998533586899815462344---689998741070 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK---PHALEKVVSAKP 189 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~---~~al~~v~~A~p 189 (329) .+..|-.+.|+.++.+|...++++..--.--.++=..||...+.+...-.|=. =--.|.+.|. .+.+..++...+ T Consensus 86 ~st~~~ie~a~~a~~~Gad~v~v~Ppy~~~~~~~i~~~~~~i~~a~~~~iPi~--iYn~P~~~g~~l~~~~~~~l~~~~~ 163 (313) T 3dz1_A 86 PGFAAXRRLARLSXDAGAAGVXIAPPPSLRTDEQITTYFRQATEAIGDDVPWV--LQDYPLTLSVVXTPKVIRQIVXDSA 163 (313) T ss_dssp SSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEE--EEECHHHHCCCCCHHHHHHHHHHCS T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE--EEECCCCCCCCCCHHHHHHHHHCCC T ss_conf 00466777765344312333334653112443368888998887405778646--7623422234478999998764056 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE---------------ECCCEEEEEEECHHHHHHHHHHHH Q ss_conf 23320138300027563897035899999999997089167---------------014048876420688999999999 Q gi|254780676|r 190 DVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIF---------------TKSGIMLGLGETRNEILQLMDDLR 254 (329) Q Consensus 190 dV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~---------------TKSGlMvGLGEt~eEi~e~l~DLr 254 (329) .++.-=-+ ...+..+-...+...+...++.. --.|.+.|++--.-++...+.++. T Consensus 164 ~~v~~kk~----------s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~g~is~~~~~~p~~~~~~~~~~ 233 (313) T 3dz1_A 164 SCVXLKHE----------DWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEXERGADGAXTGYCFPDXLVDVVKLS 233 (313) T ss_dssp SEEEEEEC----------CSSCHHHHHHHHHHHHHTSSCCCEEEECGGGTTHHHHHHHTCCEEEECCSCHHHHHHHHHHH T ss_pred CCEEEEEC----------CCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCEECCHHHHHHHHHH T ss_conf 53057733----------78508899999986110256774586161789988876407765513501748999988888 Q ss_pred HCCC--CEEECCHHCCCCCCCCCCCCCC-CHHHH-HHHHHHHHHCCC-CE-EECCCCCCCCHHHHHHHHHH Q ss_conf 6699--3997502227861007800023-84699-999999997496-24-34048300103189999999 Q gi|254780676|r 255 TADV--DFLTMGQYLQPTRKHHKVESFV-TPQDF-KSYETIAYSKGF-LM-VSASPLTRSSYHAGDDFLRL 319 (329) Q Consensus 255 ~~gv--dilTiGQYL~Ps~~h~pV~ryv-~P~eF-~~~~~~a~~~Gf-~~-V~SgPlVRSSY~A~e~~~~~ 319 (329) ..|= ....+-+-++ ++.++. ...-+ ..+|.....+|. .. ..=-|+..-+-...+...+. T Consensus 234 ~~gd~~~A~~l~~~l~------~~~~~~~~~~~~i~~~K~~l~~~G~~~~~~~R~P~~~l~~~~~~~i~~~ 298 (313) T 3dz1_A 234 KAGQRDLAHNLFDAHL------PLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYL 298 (313) T ss_dssp HTTCHHHHHHHHHHHH------HHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHH------HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 6230899999999999------9999997158878999999997799999998999899999999999999 No 152 >>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} (A:) Probab=28.98 E-value=41 Score=14.90 Aligned_cols=139 Identities=6% Similarity=-0.030 Sum_probs=51.9 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----------CHHHHH Q ss_conf 8823579999999970775189850544534532589999999999853358689981546234----------468999 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR----------KPHALE 182 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G----------~~~al~ 182 (329) +|+..-....+....+|..-|-|-+-. -+..-+...+.++..+.. +..||.-+--..| -.++.+ T Consensus 82 ldh~~~~~~i~~a~~~Gf~sVmiD~S~----l~~~enit~~~v~~a~~~--g~~vE~ElG~~~g~e~~~~~~t~~~~a~~ 155 (251) T 1qwg_A 82 YSKGKFDEFLNECEKLGFEAVEISDGS----SDISLEERNNAIKRAKDN--GFMVLTEVGKKMPDKDKQLTIDDRIKLIN 155 (251) T ss_dssp HHTTCHHHHHHHHHHHTCCEEEECCSS----SCCCHHHHHHHHHHHHHT--TCEEEEEECCSSHHHHTTCCHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHCCCCEEEECCCC----CCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCCHHHHHHHHH T ss_conf 974969999999998599889975985----678989999999999858--99895145578888665559999999999 Q ss_pred HHHHCCCHHH---HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 8741070233---2013830002756389703589999999999708916701404887642068899999999966993 Q gi|254780676|r 183 KVVSAKPDVF---NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD 259 (329) Q Consensus 183 ~v~~A~pdV~---nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329) -+.++|+|.+ +=.+=|+--+|+.. + .-..++|+..++.-+ + . .|=.|=+.+|.++-+-...-..+. T Consensus 156 f~~~tg~d~l~i~A~~~Gt~HG~y~~~-~----~l~~~~l~~I~~~~~-~---p--lVlHGaSg~~~~~~~i~~g~~KvN 224 (251) T 1qwg_A 156 FDLDAGADYVIIEGRESGKGKGLFDKE-G----KVKENELDVLAKNVD-I---N--KVIFEAPQKSQQVAFILKFGSSVN 224 (251) T ss_dssp HHHHHTCSEEEECCTTTCCSSTTBCTT-S----CBCHHHHHHHHTTSC-G---G--GEEEECCSHHHHHHHHHHHCTTCC T ss_pred HHHHCCCCEEEEEHHHCCCCCCEECCC-C----CHHHHHHHHHHHHCC-C---C--CEEEECCCHHHHHHHHHHHCCCCC T ss_conf 999668858998402117761224688-7----701889999998489-2---0--279978985689999999798965 Q ss_pred EEE--CCHHCC Q ss_conf 997--502227 Q gi|254780676|r 260 FLT--MGQYLQ 268 (329) Q Consensus 260 ilT--iGQYL~ 268 (329) +-| -.||++ T Consensus 225 i~t~~~~~~~~ 235 (251) T 1qwg_A 225 LANIAFDEVIS 235 (251) T ss_dssp EEEEEGGGHHH T ss_pred CCCCCHHHHHH T ss_conf 23679999878 No 153 >>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} (A:) Probab=28.26 E-value=39 Score=15.07 Aligned_cols=168 Identities=10% Similarity=0.090 Sum_probs=89.5 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCC Q ss_conf 57999999997077518985054453453258999999999985335868998154623446899987410702332013 Q gi|254780676|r 117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNL 196 (329) Q Consensus 117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNi 196 (329) -|..+|+.....+.+...+..-++ -.|.+.+...+..+.+.. ...++ +.+.|++ +..|. T Consensus 33 ~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~~---------------id~n~ 91 (244) T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDA----AFGTGDNRALIAEVAQAM-DIKVE-LSGGIRD---------------DDTLA 91 (244) T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHH----HHTSCCCHHHHHHHHHHC-SSEEE-EESSCCS---------------HHHHH T ss_pred CHHHHHHHHHHCCCCEEEEEECCC----CCCCCCHHHHHHHHHHHC-CCCEE-ECCCCCC---------------HHHHH T ss_conf 989999999986998799984014----457650188898877642-77443-2142033---------------02211 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCC----EE--EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC Q ss_conf 83000275638970358999999999-97089----16--7014048876420688999999999669939975022278 Q gi|254780676|r 197 ETVASNYLMVRPGARYFHSLRLLQRV-KELDP----LI--FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329) Q Consensus 197 ETV~rLy~~VRp~a~Y~rSL~vL~~a-K~~~~----~i--~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329) .....-...+--++.--+..+++... ++... .+ .+.-++..|.-++.++.++..+.+.+.|++.+|+-. T Consensus 92 ~cp~~~~~~~~~Gs~ll~~p~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~v~~---- 167 (244) T 1vzw_A 92 AALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTD---- 167 (244) T ss_dssp HHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEE---- T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCEECCCCCCCHHHHHHHCCCCEEEEEE---- T ss_conf 0000265310567888741001122221566135542022115762465320223220023566540550578752---- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH Q ss_conf 610078000238469999999999749624340483001031899 Q gi|254780676|r 270 TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD 314 (329) Q Consensus 270 s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e 314 (329) .....+..+-.++.+++++.......+++|= ++|.=++.+ T Consensus 168 ----~~~~~~~~g~~~~~i~~i~~~~~~pvi~nGg-I~s~~d~~~ 207 (244) T 1vzw_A 168 ----IAKDGTLQGPNLELLKNVCAATDRPVVASGG-VSSLDDLRA 207 (244) T ss_dssp ----C-------CCCHHHHHHHHHTCSSCEEEESC-CCSHHHHHH T ss_pred ----CCCCCCCCCCCHHHHHHHHHCCCCCEEEECC-CCCHHHHHH T ss_conf ----0145522466177788887528988899899-999999999 No 154 >>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} (A:26-323) Probab=28.21 E-value=42 Score=14.81 Aligned_cols=199 Identities=13% Similarity=0.122 Sum_probs=94.3 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHCCCCEEEE---ECC------------CC Q ss_conf 2357999999997077518985054453453258-----999999999985335868998---154------------62 Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRESAPSTTIEV---LTP------------DF 174 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~~P~~~IEv---LiP------------Df 174 (329) .++-.+.++.+..+|++.|.+-.|...-.++|-. +...++|++||+..|+..|=+ |.| |- T Consensus 32 id~l~~~v~~~~~~Gi~~v~lFgv~~~kd~~gs~a~~~~~~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~~~ 111 (298) T 1l6s_A 32 EKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLXEHG 111 (298) T ss_dssp GGGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBCSSS T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECCCC T ss_conf 99999999999977976045435467789974241498658999999998408977387414326676888741201677 Q ss_pred CCCHHHHHHH-------HHCCCHHHH------------------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf 3446899987-------410702332------------------013830002756389703589999999999708916 Q gi|254780676|r 175 LRKPHALEKV-------VSAKPDVFN------------------HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329) Q Consensus 175 ~G~~~al~~v-------~~A~pdV~n------------------HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329) --|.+.++.+ .+||.|+++ |+.+-|.=+.-.+.-.+.|- .-.|.+-...|.- T Consensus 112 idND~Tl~~l~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKfaS~fY---GPFRdA~~Sap~g 188 (298) T 1l6s_A 112 VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFY---GPFREAAGSALKG 188 (298) T ss_dssp BCHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCC---HHHHHHHTCCCSS T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCC---CHHHHHHCCCCCC T ss_conf 5758999999999999998179812513105659999999999769867513210234345134---5277884487889 Q ss_pred EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCCC--CE Q ss_conf 7014048876420688999999999669939975---022278-----6100780002384699999999997496--24 Q gi|254780676|r 230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYSKGF--LM 299 (329) Q Consensus 230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~~Gf--~~ 299 (329) - |+.--+--+-..|-+.++..|+.+ |.|+|-+ .-||-= ..-++||.-|---.||..++.-|..--+ +. T Consensus 189 D-rksYQmdp~n~~eAlre~~~D~~E-GAD~vMVKPal~YLDIi~~~k~~~~~Pv~aYqVSGEYaMikaAa~~G~~d~~~ 266 (298) T 1l6s_A 189 D-RKSYQMNPMNRREAIRESLLDEAQ-GADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEK 266 (298) T ss_dssp C-CTTTSBCTTCHHHHHHHHHHHHHT-TCSBEEEESCTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSCHHH T ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH T ss_conf 9-852105877668999986031442-98658840441378899999982699889997528999999999869975676 Q ss_pred E---------ECCCCCCCCHHHHHHHHH Q ss_conf 3---------404830010318999999 Q gi|254780676|r 300 V---------SASPLTRSSYHAGDDFLR 318 (329) Q Consensus 300 V---------~SgPlVRSSY~A~e~~~~ 318 (329) | -+|-=.=-+|+|.+.... T Consensus 267 ~~~Esl~~~kRAGAd~IiTYfA~~~a~~ 294 (298) T 1l6s_A 267 VVLESLGSIKRAGADLIFSYFALDLAEK 294 (298) T ss_dssp HHHHHHHHHHHTTCSEEEETTHHHHHHT T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHH T ss_conf 9999999998629999987078999998 No 155 >>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B (A:) Probab=28.07 E-value=42 Score=14.80 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 882357999999997077518985 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVIT 136 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViT 136 (329) ++.=-...+++|++.|||++++|- T Consensus 29 V~~P~~~EI~~a~~~lgl~~~~ie 52 (106) T 3dlu_A 29 VESPRVEEIVRAAEELKFKVIRVE 52 (106) T ss_dssp BSSCCHHHHHHHHHHTTCEEEEEE T ss_pred CCCCCHHHHHHHHHHCCCCEEECC T ss_conf 569899999999998499717526 No 156 >>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B (B:) Probab=27.80 E-value=43 Score=14.76 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=72.2 Q ss_pred HHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCC Q ss_conf 99999749823652578878767508972699986652235352234467899-------88882357999999997077 Q gi|254780676|r 58 YNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKP-------QPLDPQEPENISWAVRSMKL 130 (329) Q Consensus 58 ~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P-------~~~D~~EP~rvA~av~~l~L 130 (329) ..+-+.++|.....-.++..--.+-.++..-..|-.++ ..-|....+..+ ......+-+|+|+..-.+.. T Consensus 101 ~~lR~~ldLyanvRp~r~~~g~~~~~~~iD~vivREnt---eg~Y~g~e~~~~~~~a~~~~~~tr~~~~ri~~~AF~~A~ 177 (354) T 3blx_B 101 LTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT---EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYAR 177 (354) T ss_dssp HHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECS---SEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHH T ss_conf 45775528706677641125754435677769983245---754457666531111220113310112023224554244 Q ss_pred C--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 5--189850544534532589999999999853358689981546 Q gi|254780676|r 131 S--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD 173 (329) Q Consensus 131 k--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD 173 (329) + .-.+|+|+.-..--.....|..+.+++.+..|++.+|.+..| T Consensus 178 ~~~rk~vt~v~Kanv~~~~~g~f~~~~~~va~~yp~i~~~~~~vD 222 (354) T 3blx_B 178 AIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELID 222 (354) T ss_dssp HTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHH T ss_pred HHCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHH T ss_conf 440344420440240002046787642006867798600345678 No 157 >>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367) Probab=26.44 E-value=40 Score=14.98 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=24.1 Q ss_pred EEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 764206889999999996699399750222 Q gi|254780676|r 238 GLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) .-|+|.|.+.++++.+++.|+.++.|.-.- T Consensus 73 ~sg~t~e~~~~~~~~~k~~g~~vi~It~~~ 102 (161) T 2poc_A 73 TRDSLFPKVMSAIEQVTARDGRPIVICNEG 102 (161) T ss_dssp CGGGCCHHHHHHHHHHHHTTCCCEEEEETT T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 587103444547999996698189999378 No 158 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=26.37 E-value=45 Score=14.59 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=35.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH---CCCHHHHHCCCCCCC Q ss_conf 325899999999998533586899815462344689998741---070233201383000 Q gi|254780676|r 145 DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS---AKPDVFNHNLETVAS 201 (329) Q Consensus 145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~---A~pdV~nHNiETV~r 201 (329) .++...+.+.|.+-.+.+|+++||+..-........+..... ..|||+.-+-..... T Consensus 41 ~~~~~~~~~~~~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~ 100 (355) T 3c9h_A 41 SLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQV 100 (355) T ss_dssp CSCHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESCHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf 988789999999999878992799996887899999998864478764100145279999 No 159 >>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} (A:1-327) Probab=26.29 E-value=45 Score=14.58 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC-------CCC----------CCHHHHHHHHHHHHHHHCCC Q ss_conf 799999999707751898505445-------345----------32589999999999853358 Q gi|254780676|r 118 PENISWAVRSMKLSHVVITSVDRD-------DLD----------DGGAQHFAEVISAIRESAPS 164 (329) Q Consensus 118 P~rvA~av~~l~Lk~vViTSV~RD-------DL~----------DgGA~hfa~~I~~Ir~~~P~ 164 (329) |...|++++++|.||+|||+--.| ... .++-..+.+.+++.|+..-. T Consensus 56 ~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~t~~~v~~s~~~~~~rDlv~el~~A~r~~Glk 119 (327) T 3eyp_A 56 CRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLK 119 (327) T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCE T ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE T ss_conf 9999999998599689962044673456788998876555766588877899999988634662 No 160 >>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (B:95-262) Probab=26.23 E-value=45 Score=14.58 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=54.1 Q ss_pred HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC----CEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 999999970891670140488764206889999999996699----3997502227861007800023846999999999 Q gi|254780676|r 217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV----DFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 (329) Q Consensus 217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv----dilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a 292 (329) +++..+++.+++++-=|.+|.--+.+.+++.++++.|++.|. -|+-=|+.+.| +++ T Consensus 77 ~lv~~~~~~~~div~lS~~~~~~~~~~~~~~~~i~~lr~~g~~~~v~ii~GG~~~~~--------------------~~~ 136 (168) T 1xrs_B 77 DFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN--------------------EIA 136 (168) T ss_dssp HHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--------------------HHH T ss_pred HHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH--------------------HHH T ss_conf 999999861999999986303630268999999999996699889789998998999--------------------999 Q ss_pred HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9749624340483001031899999999998541 Q gi|254780676|r 293 YSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQH 326 (329) Q Consensus 293 ~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~ 326 (329) .++|+..++. +...|.+....+....++. T Consensus 137 ~~~Gad~~~~-----~~~~~~~~~~~l~~~~~~~ 165 (168) T 1xrs_B 137 KELGYDAGFG-----PGRFADDVATFAVKTLNDR 165 (168) T ss_dssp HTTTCSEEEC-----TTCCHHHHHHHHHHHHHHH T ss_pred HHCCCCEECC-----CCCCHHHHHHHHHHHHHHH T ss_conf 9779988859-----9988999999999999987 No 161 >>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=26.11 E-value=46 Score=14.56 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=40.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCC Q ss_conf 88823579999999970775189850544534532589999999999853358689981546234---468999874107 Q gi|254780676|r 112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAK 188 (329) Q Consensus 112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~ 188 (329) .....|-...|+.++++|...+++....=--+.|.+.-.|.+ +|-+..+--.+=--.|..-| ..+.+..+.... T Consensus 78 ~~s~~~ai~~a~~a~~~G~d~v~i~pP~~~~~s~~~i~~~~~---~ia~a~~~pi~iyn~P~~~g~~l~~~~l~~l~~~~ 154 (289) T 2yxg_A 78 SNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFG---KVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEY 154 (289) T ss_dssp CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHH---HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 401999999999999779999998898788989999999999---99982799889997863115543078899998640 Q ss_pred CHHHHH Q ss_conf 023320 Q gi|254780676|r 189 PDVFNH 194 (329) Q Consensus 189 pdV~nH 194 (329) |.|.+. T Consensus 155 ~~v~g~ 160 (289) T 2yxg_A 155 SNISAV 160 (289) T ss_dssp TTEEEE T ss_pred CCCCCC T ss_conf 223344 No 162 >>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Pseudomonas syringae PV} (A:) Probab=25.87 E-value=10 Score=19.09 Aligned_cols=16 Identities=31% Similarity=0.606 Sum_probs=11.7 Q ss_pred CCCCCCCCCCCCCCCC Q ss_conf 2235352234467899 Q gi|254780676|r 95 ICTRACTFCNVATGKP 110 (329) Q Consensus 95 ~CTR~C~FC~V~~G~P 110 (329) +-.|+|.||+.++|-- T Consensus 36 vlqRACaFvAMDhGll 51 (160) T 3cit_A 36 VLQRACAFVAXDHGLL 51 (160) T ss_dssp HHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHCCCCCEE T ss_conf 9998778860266558 No 163 >>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} (A:1-105,A:209-370) Probab=25.72 E-value=46 Score=14.51 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=9.5 Q ss_pred ECHHHHHHHHHHHHH-CCCCEEE Q ss_conf 206889999999996-6993997 Q gi|254780676|r 241 ETRNEILQLMDDLRT-ADVDFLT 262 (329) Q Consensus 241 Et~eEi~e~l~DLr~-~gvdilT 262 (329) |..+++++.+....+ .|||=+- T Consensus 109 ~V~~~l~~~l~~Wi~~~GVDGfR 131 (267) T 1wpc_A 109 EVVNELRNWGVWYTNTLGLDGFR 131 (267) T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE T ss_pred HHHHHHHHHHHHHHHCCCCCEEE T ss_conf 88877889999887446845586 No 164 >>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} (A:54-443) Probab=25.54 E-value=23 Score=16.65 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=11.2 Q ss_pred EEEEECHHHHHHHHHHHHHCCCCEEEC Q ss_conf 876420688999999999669939975 Q gi|254780676|r 237 LGLGETRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 237 vGLGEt~eEi~e~l~DLr~~gvdilTi 263 (329) ++.|.+..++.+...-+.+.|+|.+++ T Consensus 251 ~~~~~~~~~~~~~a~~~~~~g~~~i~~ 277 (390) T 1tv5_A 251 LAPDLNQEQKKEIADVLLETNIDGMII 277 (390) T ss_dssp ECSCCCHHHHHHHHHHHHHTTCSEEEE T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 699987146799999987506512430 No 165 >>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} (A:32-328) Probab=25.40 E-value=47 Score=14.47 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=96.3 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHCCCCEEEE---ECCCC----CC------ Q ss_conf 2357999999997077518985054453453258-----999999999985335868998---15462----34------ Q gi|254780676|r 115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRESAPSTTIEV---LTPDF----LR------ 176 (329) Q Consensus 115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~~P~~~IEv---LiPDf----~G------ 176 (329) .++-.+.++-+..+|++.|.+-.|--+.-++|.. +...+.|+.||+..|+..|=+ |.|=- .| T Consensus 32 id~l~~~ve~~~~lGI~aV~LFgvp~~Kd~~gs~a~~~~g~v~~air~iK~~~p~l~vi~Dvclc~YT~hGHcGil~~g~ 111 (297) T 1w1z_A 32 IDRAVEECKELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGI 111 (297) T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCSSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEESSSC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEECCCC T ss_conf 99999999999870785899984543445672221254427999999998642161798531433001221500314897 Q ss_pred --CHHHHHHH-------HHCCCHHHHH------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf --46899987-------4107023320------------------13830002756389703589999999999708916 Q gi|254780676|r 177 --KPHALEKV-------VSAKPDVFNH------------------NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI 229 (329) Q Consensus 177 --~~~al~~v-------~~A~pdV~nH------------------NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i 229 (329) |.+.++.+ .+||.|+++- +.+-|+=+.-.+.-.+.|- .=.|.+-...|.. T Consensus 112 idNd~Tl~~l~~~Al~~A~AGadivAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fY---GPFRdA~~S~p~~ 188 (297) T 1w1z_A 112 ILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFY---GPFRDALHSAPQF 188 (297) T ss_dssp EEHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTC---HHHHHHTTCCCCC T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHH---HHHHHHHHCCCCC T ss_conf 3338999999999999996578702144553579999999998447455631018888647765---7799987361126 Q ss_pred EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHH--CCCCE Q ss_conf 7014048876420688999999999669939975---022278-----6100780002384699999999997--49624 Q gi|254780676|r 230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYS--KGFLM 299 (329) Q Consensus 230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~--~Gf~~ 299 (329) --|++--+--+-..|-+.++..|+.+ |.|+|-+ .-||-= ..-.+||.-|---.||..++.-|.. +.++. T Consensus 189 gdrksYQmd~~n~~eAlre~~~D~~E-GAD~iMVKPa~~YLDii~~~k~~~~~Pv~aYqVSGEYaMikaAa~~G~~d~~~ 267 (297) T 1w1z_A 189 GDKSTYQMNPANTEEAMKEVELDIVE-GADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDR 267 (297) T ss_dssp SCSTTTSBCTTCSHHHHHHHHHHHHH-TCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCHHH T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHH T ss_conf 87642206998758999999877871-99849852217789999999970599879997538999999999879975787 Q ss_pred E---------ECCCCCCCCHHHHHHHHHH Q ss_conf 3---------4048300103189999999 Q gi|254780676|r 300 V---------SASPLTRSSYHAGDDFLRL 319 (329) Q Consensus 300 V---------~SgPlVRSSY~A~e~~~~~ 319 (329) + .+|-=.=-||+|.+....+ T Consensus 268 ~~~Esl~~~kRAGAd~IiTY~A~~~a~~L 296 (297) T 1w1z_A 268 VMMESLLCMKRAGADIIFTYYAKEAAKKL 296 (297) T ss_dssp HHHHHHHHHHHHTCSEEEETTHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHHH T ss_conf 99999999997099999770399999862 No 166 >>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} (A:) Probab=25.31 E-value=47 Score=14.46 Aligned_cols=192 Identities=8% Similarity=0.047 Sum_probs=85.9 Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHH Q ss_conf 450017998668999999997498236525788787675089726999866522353522344678998--888235799 Q gi|254780676|r 43 WIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQ--PLDPQEPEN 120 (329) Q Consensus 43 Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~r 120 (329) +.....+......++++.+++++|.-.|-.+ +++.....+. .-..+.-.+ T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 88 (278) T 1i60_A 37 DKLPEYLKDHSLDDLAEYFQTHHIKPLALNA----------------------------LVFFNNRDEKGHNEIITEFKG 88 (278) T ss_dssp THHHHHTTSSCHHHHHHHHHTSSCEEEEEEE----------------------------EECCSSCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC----------------------------CCCCCCCCHHHHHHHHHHHHH T ss_conf 7870114830699999999981993899967----------------------------777789998999999999999 Q ss_pred HHHHHHHHCCCEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHCC----CCEEEEECCCC--CCC-HHHHHHHHHCCCHH Q ss_conf 9999997077518985054453--453258999999999985335----86899815462--344-68999874107023 Q gi|254780676|r 121 ISWAVRSMKLSHVVITSVDRDD--LDDGGAQHFAEVISAIRESAP----STTIEVLTPDF--LRK-PHALEKVVSAKPDV 191 (329) Q Consensus 121 vA~av~~l~Lk~vViTSV~RDD--L~DgGA~hfa~~I~~Ir~~~P----~~~IEvLiPDf--~G~-~~al~~v~~A~pdV 191 (329) ..++++.||.+++++.+-.+.. -.|..-..+++.++++-.... .+.+|-.-+.. .+. .+.++.+...+.+- T Consensus 89 ~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gv~l~~E~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (278) T 1i60_A 89 XXETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDN 168 (278) T ss_dssp HHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTT T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 99999982939899926988777787999999999999999999974998999835777555689999999998511663 Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC-----------CCEEEEEEECHHHHHHHHHHHHHCCCCE Q ss_conf 32013830002756389703589999999999708916701-----------4048876420688999999999669939 Q gi|254780676|r 192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK-----------SGIMLGLGETRNEILQLMDDLRTADVDF 260 (329) Q Consensus 192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK-----------SGlMvGLGEt~eEi~e~l~DLr~~gvdi 260 (329) +.=++.+-- ..+.+-+....+.. .+..-..+..| -...+.+|+-.-+..+.+..|++.|.+. T Consensus 169 ~g~~~D~~h----~~~~g~~~~~~~~~---~~~~i~~~H~~D~~~~~~~~~~~~~~~~~G~G~id~~~i~~~L~~~g~~g 241 (278) T 1i60_A 169 VGLVLDSFH----FHAXGSNIESLKQA---DGKKIFIYHIDDTEDFPIGFLTDEDRVWPGQGAIDLDAHLSALKEIGFSD 241 (278) T ss_dssp EEEEEEHHH----HHHTTCCHHHHHTS---CGGGEEEEEECEECCCCTTTCCGGGEESTTSSSSCHHHHHHHHHHTTCCS T ss_pred EEEEECHHH----HHHCCCCHHHHHHH---HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE T ss_conf 789854178----88649999999986---04516799993367776443456577599782248999999999849971 Q ss_pred EECCHHCCC Q ss_conf 975022278 Q gi|254780676|r 261 LTMGQYLQP 269 (329) Q Consensus 261 lTiGQYL~P 269 (329) .-+=.|-.+ T Consensus 242 ~i~~E~~~~ 250 (278) T 1i60_A 242 VVSVELFRP 250 (278) T ss_dssp EEEECCCCG T ss_pred EEEEECCCC T ss_conf 799960682 No 167 >>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:1-275) Probab=24.94 E-value=48 Score=14.41 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.4 Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 04887642068899999999966993 Q gi|254780676|r 234 GIMLGLGETRNEILQLMDDLRTADVD 259 (329) Q Consensus 234 GlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329) -+++|.|++.+|+.+.+...+..+++ T Consensus 229 ~~~lg~~~s~~ea~~~~~~~~~~~~~ 254 (275) T 1ulv_A 229 SLALGFGADTAEALATAKASLGTGYK 254 (275) T ss_dssp EEEEEEESSHHHHHHHHHHHHHHCHH T ss_pred EEEEEECCCHHHHHHHHHHHHCCCHH T ss_conf 99999589989999999988630899 No 168 >>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242) Probab=24.65 E-value=48 Score=14.38 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=73.9 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHHHC Q ss_conf 57999999997077518985054453453258999999999985335868998154623-44689998741070233201 Q gi|254780676|r 117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFNHN 195 (329) Q Consensus 117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~nHN 195 (329) +-.-+++-+.+.+.+.+.|-..+ .+.|-.......+..++..-.+.-+.-.|.-. --...+.++.+++||++=. T Consensus 3 q~~~~~~~~~~~~~~~v~ii~~d----~~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~- 77 (119) T 3hut_A 3 EGPNNAAWXIGDGFTSVAVIGVT----TDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYL- 77 (119) T ss_dssp HHHHHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEE- T ss_pred HHHHHHHHHHHCCCCEEEEEECC----CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE- T ss_conf 99999988876078169996056----7265899999864454069789999955998731158999998659999999- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH Q ss_conf 38300027563897035899999999997089167014048876420688999999 Q gi|254780676|r 196 LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMD 251 (329) Q Consensus 196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~ 251 (329) ...+.....+++.+++.|.+ .-++.+-+=+.++.++.+. T Consensus 78 -------------~~~~~~~~~i~~~~~~~G~~----~~~~~~~~~~~~~~~~~~g 116 (119) T 3hut_A 78 -------------AXAYEDAAPFLRALRARGSA----LPVYGSSALYSPKFIDLGG 116 (119) T ss_dssp -------------ESCHHHHHHHHHHHHHTTCC----CCEEECGGGCSHHHHHHHG T ss_pred -------------ECCHHHHHHHHHHHHHCCCC----CCEEEECCCCCHHHHHHCC T ss_conf -------------73668899999999981999----8656420567767764022 No 169 >>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:1-218) Probab=24.63 E-value=48 Score=14.37 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=53.2 Q ss_pred CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHH Q ss_conf 2344689998741070233201383000275638970358999999999970891670140488764-206889999999 Q gi|254780676|r 174 FLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDD 252 (329) Q Consensus 174 f~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~D 252 (329) +.+-...++.++++|.+-+-=+--|-|-.+ -+.+...++++.+.+...+ +--+|+|.| .+-+|.++..+. T Consensus 31 ~~~~~~~i~~~~~~G~~gi~~~G~tGE~~~------Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~t~~~i~~a~~ 101 (218) T 2wkj_A 31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFV------QSLSEREQVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAAS 101 (218) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGG------SCHHHHHHHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHH------CCHHHHHHHHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHH T ss_conf 999999999999869998997757754213------8999999999999998632---3311110221102345677899 Q ss_pred HHHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCC Q ss_conf 996699399750--222786100780002384699999999997-4962 Q gi|254780676|r 253 LRTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETIAYS-KGFL 298 (329) Q Consensus 253 Lr~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~-~Gf~ 298 (329) ..++|+|-+-+. .|..|+ ..+-++.|++++.. -++. T Consensus 102 a~~~Gad~vlv~pP~~~~~~----------~~~i~~~~~~i~~a~~~~p 140 (218) T 2wkj_A 102 AKRYGFDAVSAVTPFYYPFS----------FEEHCDHYRAIIDSADGLP 140 (218) T ss_dssp HHHHTCSEEEEECCCSSCCC----------HHHHHHHHHHHHHHHTTCC T ss_pred HHHCCCCCCEECCCCCCCCC----------HHHHHHHHHHHHCCCCCCC T ss_conf 99759961201488646776----------3679999998751477786 No 170 >>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:22-153,A:205-323) Probab=24.46 E-value=22 Score=16.83 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=73.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH------- Q ss_conf 9988882357999999997077518985054453453258999999999985335868998154623446899------- Q gi|254780676|r 109 KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHAL------- 181 (329) Q Consensus 109 ~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al------- 181 (329) +|..++...-..+++.++...-+++|+.. || |+.++.=+|||++....+ T Consensus 1 r~~m~~~~~i~~l~~~i~~~~a~~ivv~~---------GA---------------GiS~~sGiP~fr~~~~~~~~~~~~~ 56 (251) T 1j8f_A 1 KERLLDELTLEGVARYMQSERCRRVICLV---------GA---------------GISTSAGIPDFRSPSTGLYDNLEKY 56 (251) T ss_dssp --CCCSSSSHHHHHHHHHSTTCCCEEEEE---------CG---------------GGTGGGTCCCTTCSCSTTSTTTTTT T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEE---------CC---------------EEEHHHCCCCCCCCCCCCCCCCCCC T ss_conf 55366745899999999747888699993---------87---------------2001008998638999863587556 Q ss_pred ---HHHHHCCCHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCC--EEEE--------CCC---EEEEEEECHH Q ss_conf ---987410702332013830002756389-7035899999999997089--1670--------140---4887642068 Q gi|254780676|r 182 ---EKVVSAKPDVFNHNLETVASNYLMVRP-GARYFHSLRLLQRVKELDP--LIFT--------KSG---IMLGLGETRN 244 (329) Q Consensus 182 ---~~v~~A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~--~i~T--------KSG---lMvGLGEt~e 244 (329) .....+.++.|..|-+.+-.+|...+. .+.-..+-..|+...+.+. .+.| ++| ++-=-|.-.+ T Consensus 57 ~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pt~~H~~L~~L~~~~~~~~iiTqNiD~L~~rAg~~~vielHG~Lp~ 136 (251) T 1j8f_A 57 HLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEASLPA 136 (251) T ss_dssp CCSSGGGGGBHHHHHHCCHHHHHHHHHHSSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETCCCH T ss_pred CCCCHHHHHCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCHHHHHHHCCCH T ss_conf 89999998688999879699999999873474899988999999997298735996467137660598566665537999 Q ss_pred HHHHHH-HHHHHCCCCEEECCHHCC Q ss_conf 899999-999966993997502227 Q gi|254780676|r 245 EILQLM-DDLRTADVDFLTMGQYLQ 268 (329) Q Consensus 245 Ei~e~l-~DLr~~gvdilTiGQYL~ 268 (329) .+.+.+ .|+...++ +|.||-=|+ T Consensus 137 ~~~~~~~~d~~~~Dl-liViGTSl~ 160 (251) T 1j8f_A 137 RFFSCMQSDFLKVDL-LLVMGTSLQ 160 (251) T ss_dssp HHHHHHHHGGGSCSE-EEEESSCSC T ss_pred HHHHHHHHHHHCCCE-EEEECCCCE T ss_conf 999999999966999-999899887 No 171 >>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219) Probab=24.14 E-value=49 Score=14.31 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHHHHHHHCCCCEEEC Q ss_conf 89999999999708916701404887642-0688999999999669939975 Q gi|254780676|r 213 FHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLMDDLRTADVDFLTM 263 (329) Q Consensus 213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l~DLr~~gvdilTi 263 (329) +...++++.+.+... .+--+|+|.|. +-+|.++.++...++|+|-+-+ T Consensus 67 ~Er~~~~~~~~~~~~---~~~~vi~gv~~~st~~ai~~a~~a~~~Gad~v~v 115 (219) T 1xxx_A 67 GEKIELLRAVLEAVG---DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV 115 (219) T ss_dssp HHHHHHHHHHHHHHT---TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE T ss_pred HHHHHHHHHHHHHHC---CCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 999999999999840---4564453354302788999999999825791999 No 172 >>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} (A:) Probab=24.07 E-value=50 Score=14.30 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=7.9 Q ss_pred HHHHHHHCCCEEEEE Q ss_conf 999997077518985 Q gi|254780676|r 122 SWAVRSMKLSHVVIT 136 (329) Q Consensus 122 A~av~~l~Lk~vViT 136 (329) |+.++.+|.+||.|- T Consensus 79 ~~~Lkd~G~~~viiG 93 (252) T 2btm_A 79 PVMLKDLGVTYVILG 93 (252) T ss_dssp HHHHHHHTCCEEEES T ss_pred HHHHHHHCCCEEECC T ss_conf 999987085301013 No 173 >>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60) Probab=23.94 E-value=36 Score=15.30 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=37.1 Q ss_pred HHHHHHH-HCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 9999999-66993997502227861007800023846999999999974962 Q gi|254780676|r 248 QLMDDLR-TADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329) Q Consensus 248 e~l~DLr-~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329) -+|.|+. .+||.+-|+..||.... .+.|+.-+...+.+.++||. T Consensus 10 ~tl~diA~~aGvS~sTVSr~ln~~~-------~vs~~tr~rV~~~a~elgY~ 54 (60) T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNRPE-------QLSAELRQRILDTAEDMGYL 54 (60) T ss_dssp THHHHHHHHHTSCHHHHHHHHHCGG-------GSCHHHHHHHHHHHHHTTC- T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHCCC T ss_conf 6299999998849999999858989-------99999999999999985889 No 174 >>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} (C:105-185,C:404-466) Probab=23.86 E-value=13 Score=18.41 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=48.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH------HC-CCCEEECCCCCCCCHHH Q ss_conf 0688999999999669939975022278610078000238469999999999------74-96243404830010318 Q gi|254780676|r 242 TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAY------SK-GFLMVSASPLTRSSYHA 312 (329) Q Consensus 242 t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~------~~-Gf~~V~SgPlVRSSY~A 312 (329) ++|++++..+-+..+-..-+|...||+|.. .+|++.+++++.-+ .. ++..|..-+|.+.||.. T Consensus 56 ~de~lFqeAR~iv~a~~Q~I~~~e~L~pg~--------Ft~~QL~eIrk~sLariiCdn~d~i~~vq~~~F~~~~~~n 125 (144) T 1d2v_C 56 DGERLYQEARKIVGAMVQIITYRDYLNEGV--------FSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPR 125 (144) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTHSTTT--------SCHHHHHHHTTCCHHHHHHHHSSCCEEECSCTTTCCSTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCEECCCCCC T ss_conf 878999999999999985713998787998--------9999999999668999876079985336766450789999 No 175 >>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* (A:) Probab=23.52 E-value=51 Score=14.23 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=59.7 Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHH-----------HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC Q ss_conf 999999997077518985054453453258999-----------999999985335868998154623446899987410 Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHF-----------AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA 187 (329) Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hf-----------a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A 187 (329) ..+|+....+|.++++|---|.=++.|-|.+.| ....+.+++.||.+.++...-+........ T Consensus 49 ~ei~knL~l~Gv~~i~iiD~d~v~~~nl~rqf~~~~~dig~~k~~~~~~~l~~~n~~v~~~~~~~~~~~~~~~~------ 122 (346) T 1y8q_A 49 AEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESF------ 122 (346) T ss_dssp HHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHH------ T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHH------ T ss_conf 99999999957987999949996574512065356324896117899999997589874123204355167999------ Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 7023320138300027563897035899999999997089167 Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIF 230 (329) Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~ 230 (329) .....-.|-...+..-...+-+..++.+.-+. T Consensus 123 -----------~~~~d~vi~~~d~~~~~~~l~~~~~~~~~~~i 154 (346) T 1y8q_A 123 -----------FTQFDAVCLTCCSRDVIVKVDQICHKNSIKFF 154 (346) T ss_dssp -----------HTTCSEEEEESCCHHHHHHHHHHHHHTTCEEE T ss_pred -----------HHHCCEEEECCCCHHHHHHHHHHHHHCCCCEE T ss_conf -----------96187487416999999999999998199889 No 176 >>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} (A:) Probab=23.43 E-value=51 Score=14.22 Aligned_cols=15 Identities=0% Similarity=0.089 Sum_probs=8.4 Q ss_pred HHHHHHHCCCEEEEE Q ss_conf 999997077518985 Q gi|254780676|r 122 SWAVRSMKLSHVVIT 136 (329) Q Consensus 122 A~av~~l~Lk~vViT 136 (329) |+.++.+|.+||.|- T Consensus 79 ~~~L~d~G~~~vliG 93 (250) T 1yya_A 79 ARMLSDLGCRYAIVG 93 (250) T ss_dssp HHHHHHTTCSEEEES T ss_pred HHHHHHHCCCEEECC T ss_conf 799987354400002 No 177 >>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} (A:) Probab=23.26 E-value=51 Score=14.20 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=15.3 Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 9999970775189850544534532589999999999853 Q gi|254780676|r 122 SWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRES 161 (329) Q Consensus 122 A~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~ 161 (329) ++..+.+|.+||.|----|-.+-+.--...++-++...+. T Consensus 79 ~~mLkd~G~~~viIGHSERR~~f~E~d~~i~~Kv~~a~~~ 118 (247) T 1ney_A 79 VDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQ 118 (247) T ss_dssp HHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 9999981993999655787753599708889999999976 No 178 >>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=23.21 E-value=51 Score=14.19 Aligned_cols=43 Identities=7% Similarity=0.181 Sum_probs=28.8 Q ss_pred CCEEEEEEE----CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCC Q ss_conf 404887642----0688999999999669939975022278610078 Q gi|254780676|r 233 SGIMLGLGE----TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHK 275 (329) Q Consensus 233 SGlMvGLGE----t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~p 275 (329) .|.++.++. +.+-+-+.++-|++-|+.++|+.++++.-..+.| T Consensus 210 ~~~~~~~~~~~~~~~~~l~~li~~lk~~g~~fvt~~e~~~~~~~~~~ 256 (261) T 2qv5_A 210 NGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGEGH 256 (261) T ss_dssp HSEEEEEEECCHHHHHHHHHHHHHGGGGTEEECCHHHHC-------- T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCCCC T ss_conf 39379997899899999999726777588699987996410057876 No 179 >>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (o:56-188) Probab=23.17 E-value=37 Score=15.20 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=51.9 Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 99999966993997502227861007800023846-99999999997496243404830010318999999999985413 Q gi|254780676|r 249 LMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQ-DFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQHL 327 (329) Q Consensus 249 ~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~-eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~~ 327 (329) +..-+.++|..++||-|...-.+.--.+.-.--|. -=+.++.+|..-|-.+-..-|+|||- ++-|++++-.|.... T Consensus 54 Ar~kI~~aGG~~ltfdqLa~~~P~G~n~~llrg~~~~R~a~khfG~apg~p~s~t~P~v~sk---grkfe~arGrr~s~~ 130 (133) T 2zkr_o 54 ARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSK---GRKFERARGRRASRG 130 (133) T ss_dssp HHHHHHHHSSCEEEHHHHHHHCTTCCSEEEEC------------------------------------------------ T ss_pred HHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCHHHHCCCCCCCC T ss_conf 99999975997964999998689999749985685304455236779999988887843055---431244216543345 No 180 >>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri} (A:) Probab=23.11 E-value=52 Score=14.18 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=23.6 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH Q ss_conf 4048876420688999999999669939975022 Q gi|254780676|r 233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY 266 (329) Q Consensus 233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY 266 (329) +-.++| |.+||.+-+.+++++|+|-+.|+.- T Consensus 278 ~~~~vG---tp~~v~e~l~~~~~~G~d~~~l~~~ 308 (327) T 1z69_A 278 AFSICG---TPDDCMKRIKDLEAIGVTQIVAGSP 308 (327) T ss_dssp HHCEEE---SHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred CEEEEE---CHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 108992---8999999999999739998999478 No 181 >>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:1-96,A:321-388) Probab=23.08 E-value=42 Score=14.82 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.5 Q ss_pred HHH--HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 675--08972699986652235352234467899888 Q gi|254780676|r 79 GEC--WNKNHATFMILGAICTRACTFCNVATGKPQPL 113 (329) Q Consensus 79 ~EC--w~~gtATFMilG~~CTR~C~FC~V~~G~P~~~ 113 (329) .|| |++-...|.+-|..|.|.|=+--.-.|+|+.- T Consensus 93 ~~~vnwSGYSGsF~~~~~~C~~pCF~VElIRGrP~e~ 129 (164) T 1ivd_A 93 VCIANRSGYSGIFSVEGKSCINRCFYVELIRGRKQET 129 (164) T ss_dssp CSBCSCCCCEEEEEEECSSSEEEEEEEEEEEETTTST T ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEEEECCCCCC T ss_conf 8998876412579977888521018999960787654 No 182 >>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:1-105,A:202-373) Probab=22.63 E-value=53 Score=14.11 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=19.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCC Q ss_conf 544534532589999999999853---358689981546234 Q gi|254780676|r 138 VDRDDLDDGGAQHFAEVISAIRES---APSTTIEVLTPDFLR 176 (329) Q Consensus 138 V~RDDL~DgGA~hfa~~I~~Ir~~---~P~~~IEvLiPDf~G 176 (329) |.|=++..|.-.-+.++|+.||+. ..+..|-++. |.+| T Consensus 64 ~~R~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~~i~~-d~~G 104 (277) T 3gg8_A 64 VCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILL-DTKG 104 (277) T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHHHHCTTCCCEEEE-ECCC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCC T ss_conf 9999899999999999999999999865899859999-4889 No 183 >>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} (A:) Probab=22.60 E-value=53 Score=14.11 Aligned_cols=180 Identities=6% Similarity=0.003 Sum_probs=81.0 Q ss_pred CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHH Q ss_conf 98668999999997498236525788787675089726999866522353522344678998888235-------79999 Q gi|254780676|r 50 VSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQE-------PENIS 122 (329) Q Consensus 50 ~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~E-------P~rvA 122 (329) ......++++.+++++|.-+.-.+.| ....+...|++. -.+.. T Consensus 56 ~~~~~~~~~~~l~~~gl~i~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 105 (307) T 1xp3_A 56 EELNIEAGRKHMEQNGIEEIIIHAPY------------------------------IINVGNTTKPETFQLGVDFLRMEI 105 (307) T ss_dssp GGGCHHHHHHHHHHTTCCCEEEECCT------------------------------TCCTTCCSCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCEECCCCE------------------------------EECCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999998499751215842------------------------------433444243899999999999999 Q ss_pred HHHHHHCCCEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEE----CCCCCC-CHHHHHHHHH--CCCHHHH Q ss_conf 999970775189850544534532--589999999999853358689981----546234-4689998741--0702332 Q gi|254780676|r 123 WAVRSMKLSHVVITSVDRDDLDDG--GAQHFAEVISAIRESAPSTTIEVL----TPDFLR-KPHALEKVVS--AKPDVFN 193 (329) Q Consensus 123 ~av~~l~Lk~vViTSV~RDDL~Dg--GA~hfa~~I~~Ir~~~P~~~IEvL----iPDf~G-~~~al~~v~~--A~pdV~n 193 (329) +..+.||.+++++-+-...+-.+. +-..+++.++++-.......|.+. -+++.+ ..+.+..+++ ..+..+. T Consensus 106 ~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gi~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g 185 (307) T 1xp3_A 106 ERTSALGVAKQIVLHPGAHVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMAGKGTECGRSFEEIAKIIDGVKYNEKLS 185 (307) T ss_dssp HHHHHSSSCCEEEECCEECTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCCCCTTEECCSHHHHHHHHHHCTTGGGEE T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEE T ss_conf 99998487988998998666689999999999999987400464179987415667876678899999999836777769 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEE---------CCCEEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 0138300027563897035899999999997--0891670---------1404887642068899999999966993 Q gi|254780676|r 194 HNLETVASNYLMVRPGARYFHSLRLLQRVKE--LDPLIFT---------KSGIMLGLGETRNEILQLMDDLRTADVD 259 (329) Q Consensus 194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~--~~~~i~T---------KSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329) =++.+.--.....-+....+...+-+.++.- .-..+.. .-+-++-+||-.-+..+.+..|++.|.+ T Consensus 186 ~~~D~~h~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~h~~d~~~~~~~~~~~~~~~G~G~id~~~i~~~L~~~gy~ 262 (307) T 1xp3_A 186 VCFDTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQVLHINDSKNVRGAGKDRHENIGFGHIGYKALHHIVHHPQLT 262 (307) T ss_dssp EEEEHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCTTCCCCCEECTTSSSSCHHHHHHHHTCGGGT T ss_pred EEECHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 98048889871277777899999999885253352376533676767756515678899976989999998182316 No 184 >>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* (A:131-178,A:224-280,A:346-362) Probab=22.36 E-value=53 Score=14.08 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.2 Q ss_pred EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 4206889999999996699399750222786100780002384699999 Q gi|254780676|r 240 GETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSY 288 (329) Q Consensus 240 GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~ 288 (329) =+|.+|++++.+.|++.|+.-+.++..--=+.. ...++|+-...+ T Consensus 20 P~TWdE~~~~a~klk~~g~~~~~~~~~~~l~~~----~~~wt~ew~aa~ 64 (122) T 2z8f_A 20 PQTADEFIAAAKTAAAAGKYIMSYQPDEAAATT----NPRWDPSFDASI 64 (122) T ss_dssp CCBHHHHHHHHHHHHHTTCBSCBCCGGGTCSBC----CCTTSHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCCHHHHHHHH T ss_conf 310589999999998659706874576659887----753124566665 No 185 >>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} (A:) Probab=22.31 E-value=53 Score=14.07 Aligned_cols=120 Identities=11% Similarity=-0.014 Sum_probs=74.9 Q ss_pred HHHHHHHHHH-HCCCCEEECCCCCCCHHHHHC--CCCEEEEEECCCCCCCCCCCC---CCCCCCC-------CCCHHHHH Q ss_conf 6899999999-749823652578878767508--972699986652235352234---4678998-------88823579 Q gi|254780676|r 53 GYKETYNILR-SRNLTTVCEEAGCPNIGECWN--KNHATFMILGAICTRACTFCN---VATGKPQ-------PLDPQEPE 119 (329) Q Consensus 53 ~~~~~~~~l~-~~~L~TVCeeA~CPNi~ECw~--~gtATFMilG~~CTR~C~FC~---V~~G~P~-------~~D~~EP~ 119 (329) .+....-.+| .++|..-.--.+...-..+-. .+..-|+|..+. |-..=+.. ..++.+. ......-+ T Consensus 79 ~~~s~~~~lR~~ldlya~~Rp~~~~~g~~~~~~~~~~id~vivRen-teg~Y~g~e~~~~~~~~~~~a~~~~~~tr~~~~ 157 (337) T 1w0d_A 79 LERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREG-TEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVR 157 (337) T ss_dssp HHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEEC-SCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHH T ss_pred CCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHH-HCCCCCCCCCCEECCCCCEEEEEEEEECCHHEE T ss_conf 5441478899873466214666522531111145788775519766-167401688714248875477999850320023 Q ss_pred HHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 999999970775-189850544534532589999999999853358689981546 Q gi|254780676|r 120 NISWAVRSMKLS-HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD 173 (329) Q Consensus 120 rvA~av~~l~Lk-~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD 173 (329) |+|+..-++.++ --.+|+|+-...--..-..|.++.+++.+..|++.++-+..| T Consensus 158 ria~~AF~~A~~~~~~vt~v~K~ni~~~~~~~f~~~~~~va~~~p~i~~~~~~vD 212 (337) T 1w0d_A 158 RVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVD 212 (337) T ss_dssp HHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHH T ss_pred EHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 2144565787536873897616147778889999988987415874034456578 No 186 >>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygenase; structural genomics, PSI-2, protein structure initiative; 1.82A {Burkholderia phytofirmans psjn} (A:69-141) Probab=22.23 E-value=54 Score=14.06 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=27.0 Q ss_pred CCCEEEEEE-ECHHHHHHHHHHHHHCCCCEEE Q ss_conf 140488764-2068899999999966993997 Q gi|254780676|r 232 KSGIMLGLG-ETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 232 KSGlMvGLG-Et~eEi~e~l~DLr~~gvdilT 262 (329) -+|.++++. ++.+||-++...++++|+.++. T Consensus 6 ~~~~~laf~v~s~e~Vd~~~~~~~~~G~~i~~ 37 (73) T 2rbb_A 6 GIKFLLNFDVDTKEAVDKLVPVAIAAGATLIK 37 (73) T ss_dssp SCCEEEEEECSCHHHHHHHHHHHHHTTCEEEE T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEC T ss_conf 87048754113331455555542032203402 No 187 >>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} (A:123-169,A:241-286,A:349-360) Probab=22.17 E-value=54 Score=14.05 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.5 Q ss_pred ECHHHHHHHHHHHHHCCCCEEECCH Q ss_conf 2068899999999966993997502 Q gi|254780676|r 241 ETRNEILQLMDDLRTADVDFLTMGQ 265 (329) Q Consensus 241 Et~eEi~e~l~DLr~~gvdilTiGQ 265 (329) .|+||++++.+.|++.|+--+++|- T Consensus 23 tTWDEl~aaAkKLkaaGi~Pia~gg 47 (105) T 3i3v_A 23 TTGDQLIAAARKLRAKGIAPVTVGG 47 (105) T ss_dssp CBHHHHHHHHHHHHHTTCEEEECCT T ss_pred CCHHHHHHHHHHHHHCCCCCEEECC T ss_conf 9889999999999862977334047 No 188 >>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} (A:) Probab=22.14 E-value=54 Score=14.05 Aligned_cols=157 Identities=12% Similarity=0.170 Sum_probs=95.6 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCC-------------H-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH Q ss_conf 999999970775189850544534532-------------5-89999999999853358689981546234468999874 Q gi|254780676|r 120 NISWAVRSMKLSHVVITSVDRDDLDDG-------------G-AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV 185 (329) Q Consensus 120 rvA~av~~l~Lk~vViTSV~RDDL~Dg-------------G-A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~ 185 (329) ..-+....+|++++-+|--.+--|-|| | ..+-.+.|+++-++ ++.|.+-=. ++.-..+.+. T Consensus 135 ~~l~~~~~lGvR~i~lt~~~~N~la~g~~~~~~~~~~~~~GLt~~G~~~V~~mn~l--GiiIDvsH~---s~~~~~d~~~ 209 (369) T 1itu_A 135 GVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRL--GVLIDLAHV---SVATMKATLQ 209 (369) T ss_dssp HHHHHHHHTTEEEEESCSSSCCSSBCBGGGGGTSSCCSSSSBCHHHHHHHHHHHHH--TCEEECTTB---CHHHHHHHHH T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCEEECCCC---CHHHHHHHHH T ss_conf 89999997496499963587887777654346888766789673549999998753--824443778---7899999984 Q ss_pred -HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE----------E-ECHHHHHHHHHHH Q ss_conf -107023320138300027563897035899999999997089167014048876----------4-2068899999999 Q gi|254780676|r 186 -SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL----------G-ETRNEILQLMDDL 253 (329) Q Consensus 186 -~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL----------G-Et~eEi~e~l~DL 253 (329) .-+|-++.|.- ++.+++.-|--.+ ++|+.+.+ +|.++|+ + -|.+++.+.+..+ T Consensus 210 ~s~~Pvi~SHs~--~r~l~~~~RNl~D-----e~ir~ia~--------~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~i 274 (369) T 1itu_A 210 LSRAPVIFSHSS--AYSVCASRRNVPD-----DVLRLVKQ--------TDSLVMVNFYNNYISCTNKANLSQVADHLDHI 274 (369) T ss_dssp HCSSCCEESSCC--BTTTSCCTTSBCH-----HHHHHHHH--------HTCEEEECCCHHHHTSSSCCBHHHHHHHHHHH T ss_pred CCCCCEEEECCC--HHHCCCCCCCCCH-----HHHHHHHH--------CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 158974651426--6640787679988-----99999996--------49957650463303688631489999999999 Q ss_pred HH-CCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 96-6993997502227861007800023846999999999974962 Q gi|254780676|r 254 RT-ADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL 298 (329) Q Consensus 254 r~-~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~ 298 (329) .+ .|+|.|-||-=+--...+ +.-+-+|.+|..+.+.=.+.||. T Consensus 275 ~~~~G~dhVgiGsD~dg~~~~--p~gl~~~~~~p~l~~~L~~rG~s 318 (369) T 1itu_A 275 KEVAGARAVGFGGDFDGVPRV--PEGLEDVSKYPDLIAELLRRNWT 318 (369) T ss_dssp HHHHCGGGEEECCCTTSCSCC--CBTCSSTTCHHHHHHHHHHTTCC T ss_pred HHHCCCCEEEECCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCC T ss_conf 986195227877577899999--88877877889999999986999 No 189 >>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} (A:) Probab=22.12 E-value=54 Score=14.05 Aligned_cols=121 Identities=14% Similarity=0.153 Sum_probs=76.7 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 823579999999970775189850544534532----5899999999998533586899815462344689998741070 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDG----GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP 189 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~Dg----GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p 189 (329) |.+--.+.+++.++.|-+.+..-.-.-+.++.+ |...+.......++.. +.+++-=| +.++++.+.+-- T Consensus 35 ~~~~a~~~i~~a~~~ga~~vkfq~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G----i~~~~t~~--d~~~~~~l~~~~- 107 (262) T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYG----LVTVTEVM--DTRHVELVAKYS- 107 (262) T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHT----CEEEEECC--CGGGHHHHHHHC- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC----EEEEEEEC--CHHHHHHHCCEE- T ss_conf 99999999999998403111464345656644355651178999998775315----11466635--176554324655- Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 2332013830002756389703589999999999708916701404887642068899999999966993 Q gi|254780676|r 190 DVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD 259 (329) Q Consensus 190 dV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd 259 (329) +.+.-++.=-+...+|+.+...+.-+.-|||.| -|.+|+..++.-+++.|.. T Consensus 108 --------------~~~kI~S~~~~n~~lL~~~a~~~kPvil~s~g~----~~~~e~~~a~~~i~~~Gn~ 159 (262) T 1zco_A 108 --------------DILQIGARNSQNFELLKEVGKVENPVLLKRGMG----NTIQELLYSAEYIMAQGNE 159 (262) T ss_dssp --------------SEEEECGGGTTCHHHHHHHTTSSSCEEEECCTT----CCHHHHHHHHHHHHTTTCC T ss_pred --------------EEEEECHHHCCCHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHHHHCCCC T ss_conf --------------899955143022799998751686089855532----0266666455575226974 No 190 >>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A (A:) Probab=22.01 E-value=54 Score=14.03 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=33.1 Q ss_pred CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 775189850-------54453453258999999999985335868998 Q gi|254780676|r 129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV 169 (329) Q Consensus 129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv 169 (329) +-++||||. -+|||+-..-+..+.+..+.|++.+|+..|=+ T Consensus 72 ~aD~Vii~~~~~~~~~~~~~~~l~~n~~i~~~i~~~i~~~~p~a~iiv 119 (317) T 2ewd_A 72 GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119 (317) T ss_dssp TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 450356411345689976777877778899999999997499816999 No 191 >>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} (A:128-502) Probab=21.94 E-value=54 Score=14.02 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.4 Q ss_pred HHHHCCCCEEECCHHCCC Q ss_conf 999669939975022278 Q gi|254780676|r 252 DLRTADVDFLTMGQYLQP 269 (329) Q Consensus 252 DLr~~gvdilTiGQYL~P 269 (329) -+..-|.-+|-.||.+-- T Consensus 319 ~~~~~G~p~i~~G~E~g~ 336 (375) T 1j0h_A 319 QLTFTGSPCIYYGDEIGM 336 (375) T ss_dssp HHHSSSCCEEETTGGGTC T ss_pred HHHCCCCCEEECCHHCCC T ss_conf 982899658866443275 No 192 >>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural genomics, midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} (A:59-113) Probab=21.88 E-value=47 Score=14.44 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=21.1 Q ss_pred EEEEE-ECHHHHHHHHHHHHHCCCCEEE Q ss_conf 88764-2068899999999966993997 Q gi|254780676|r 236 MLGLG-ETRNEILQLMDDLRTADVDFLT 262 (329) Q Consensus 236 MvGLG-Et~eEi~e~l~DLr~~gvdilT 262 (329) =+|+. ++.+||-+...-|++.||.|+. T Consensus 5 HiaF~v~s~~eVd~~~~~l~a~Gv~i~~ 32 (55) T 1xqa_A 5 HVGFPQESEEQVDKINQRLKEDGFLVEP 32 (55) T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCCCC T ss_pred EEEEEECCCCCHHHHHHHHHHCCEEEEC T ss_conf 0344302332013344468767827723 No 193 >>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:1-17,A:202-511) Probab=21.52 E-value=55 Score=13.96 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=25.2 Q ss_pred HHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEECCCCCCC Q ss_conf 999999966993997502227861007800023846999999999--9749624340483001 Q gi|254780676|r 248 QLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA--YSKGFLMVSASPLTRS 308 (329) Q Consensus 248 e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a--~~~Gf~~V~SgPlVRS 308 (329) +..+--++.||+++-=| +.|.|.. +-+.-=+.- +--|+.+-.-||||-- T Consensus 214 eL~~rA~e~gVQvmIEG------PGHvPl~------~I~~nv~l~K~lc~~APfYvLGPLvTD 264 (327) T 3epo_A 214 ELTKVAWKHGVQVMIEG------PGHVAMH------KIKANMDEQLKHCHEAPFYTLGPLTTD 264 (327) T ss_dssp HHHHHHHHTTCCEEEEC------CCBCCHH------HHHHHHHHHHHHTTTCCEEEECCBSCS T ss_pred HHHHHHHHHCCCEEECC------CCCCCHH------HHHHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 99999998099667338------9977889------999999999997179980102861014 No 194 >>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} (A:) Probab=21.42 E-value=41 Score=14.86 Aligned_cols=27 Identities=19% Similarity=0.606 Sum_probs=18.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 522353522344678998888235799999999707 Q gi|254780676|r 94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMK 129 (329) Q Consensus 94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~ 129 (329) ++-++.|+||..... |..|.++|++=| T Consensus 71 ~itq~eC~FCHsE~A---------~~eV~~~I~~~G 97 (109) T 2hfq_A 71 TVTSEECRFCHSEKA---------PDEVIEAIKQNG 97 (109) T ss_dssp CCCTTTBCCCEEEEC---------CHHHHHHHHHHS T ss_pred CCCCCCCCCCCCCCC---------CHHHHHHHHHCC T ss_conf 652220646567659---------989999998598 No 195 >>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} (E:1-62) Probab=21.06 E-value=39 Score=15.08 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCHHH Q ss_conf 699999999997496243404830010318 Q gi|254780676|r 283 QDFKSYETIAYSKGFLMVSASPLTRSSYHA 312 (329) Q Consensus 283 ~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A 312 (329) +-=+...++|.+.|...+.+-||+||=|+- T Consensus 27 ~~A~~I~~~A~~~gIPi~~~~~LAr~L~~~ 56 (62) T 3c01_E 27 QRALAVRAYAEKVGVPVIVDIKLARSLFKT 56 (62) T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEECHHHHHHHHHC T ss_conf 889999999998699499699999999972 No 196 >>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} (A:1-109,A:168-337) Probab=20.86 E-value=57 Score=13.87 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=13.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 5325899999999998533586899815462 Q gi|254780676|r 144 DDGGAQHFAEVISAIRESAPSTTIEVLTPDF 174 (329) Q Consensus 144 ~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf 174 (329) .-|+-+.|.+-|++.++..=.+.+. ++||+ T Consensus 82 ~~G~~~e~~~lv~~~h~~gi~vi~D-~V~DL 111 (279) T 1mxg_A 82 RFGSKEELVRLIQTAHAYGIKVIAD-VVIHK 111 (279) T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEE-ECCTS T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE-ECCCC T ss_conf 8999999999999999879999998-33464 No 197 >>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647) Probab=20.81 E-value=57 Score=13.87 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=39.4 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC Q ss_conf 70358999999999970891670140488764206889999999996699 Q gi|254780676|r 209 GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV 258 (329) Q Consensus 209 ~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv 258 (329) ...-..-|.+++.+++++++.+ ...++-|-|+-.+|++++.=.+++|. T Consensus 221 s~~~~~~l~~~~~i~~~g~~a~--~~yIIsmt~s~sdiL~v~~L~k~~g~ 268 (420) T 1jqn_A 221 SAETREVLDTCQVIAEAPQGSI--AAYVISMAKTPSDVLAVHLLLKEAGI 268 (420) T ss_dssp CHHHHHHHHHHHHHHHSCTTSE--EEEEEETCCSHHHHHHHHHHHHTTTC T ss_pred CHHHHHHHHHHHHHHHHCCCCH--HHEEHHCCCCCCHHHHHHHHHHHHCC T ss_conf 6789999999999998376651--32000135782038999999998398 No 198 >>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (D:85-364) Probab=20.73 E-value=57 Score=13.85 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=7.8 Q ss_pred EEEECCCCCCCHHHHHHHH Q ss_conf 9981546234468999874 Q gi|254780676|r 167 IEVLTPDFLRKPHALEKVV 185 (329) Q Consensus 167 IEvLiPDf~G~~~al~~v~ 185 (329) |=++.-|.----+|+..+. T Consensus 171 VLli~DslTr~a~A~reis 189 (280) T 2ck3_D 171 VLLFIDNIFRFTQAGSEVS 189 (280) T ss_dssp EEEEEECTHHHHHHHHHHH T ss_pred EEEEECCCHHHHHHHHHHH T ss_conf 8999736068999987889 No 199 >>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} (A:25-247) Probab=20.63 E-value=58 Score=13.84 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=68.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC Q ss_conf 89988882357999999997077518985054453453258999999999985335868998154623446899987410 Q gi|254780676|r 108 GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA 187 (329) Q Consensus 108 G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A 187 (329) ..|...++..+...+..+.+.|...+.+..-.. ........|++|++.. .+-+..-++-...+.++....+ T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~------~~~~~~~~i~~i~~~~---~~p~~~~~~i~~~~~~~~~~~~ 100 (223) T 1a53_A 30 KSPSGLDVERDPIEYSKFMERYAVGLSILTEEK------YFNGSYETLRKIASSV---SIPILMKDFIVKESQIDDAYNL 100 (223) T ss_dssp BCTTSCBCCCCHHHHHHHHTTTCSEEEEECCCT------TTCCCHHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC------CCCCCHHHHHHHHHCC---CCCEEECCCCCCHHHHHHHHHC T ss_conf 899988765687999999971985789851665------3113315788885036---7760200100676799999861 Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC Q ss_conf 70233201383000275638970358999999999970891670140488764206889999999996699399750222 Q gi|254780676|r 188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL 267 (329) Q Consensus 188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL 267 (329) +.+.+..+... .......+.++.++..+..+ +++.+ |.+| +..+.+.|.|.+.++..- T Consensus 101 g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~v------~~~~~-~~~~----a~~a~~~g~d~i~~~~~~ 158 (223) T 1a53_A 101 GADTVLLIVKI-----------LTERELESLLEYARSYGMEP------LIEIN-DEND----LDIALRIGARFIGINSRD 158 (223) T ss_dssp TCSEEEEEGGG-----------SCHHHHHHHHHHHHTTTCCC------EEEEC-SHHH----HHHHHHTTCSEEEEESBC T ss_pred CCCHHHHHHHH-----------CCHHHHHHHHHHHHHHHHHH------HHHCC-CHHH----HHHHHHCCCCEEEEECCC T ss_conf 54555676863-----------00788899999999986467------77258-9999----999981685705452467 Q ss_pred C Q ss_conf 7 Q gi|254780676|r 268 Q 268 (329) Q Consensus 268 ~ 268 (329) . T Consensus 159 ~ 159 (223) T 1a53_A 159 L 159 (223) T ss_dssp T T ss_pred H T ss_conf 6 No 200 >>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A (A:61-151) Probab=20.51 E-value=58 Score=13.82 Aligned_cols=30 Identities=10% Similarity=0.424 Sum_probs=23.0 Q ss_pred ECHHHHHHHHHHHHHCC--CCEEECC--HHCCCC Q ss_conf 20688999999999669--9399750--222786 Q gi|254780676|r 241 ETRNEILQLMDDLRTAD--VDFLTMG--QYLQPT 270 (329) Q Consensus 241 Et~eEi~e~l~DLr~~g--vdilTiG--QYL~Ps 270 (329) =|.++|..++.-|+..| ..+++|| +|+|-. T Consensus 55 Is~dDi~rAi~~L~~LG~Gf~vi~ig~k~~v~Sv 88 (91) T 3cuq_A 55 VSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSV 88 (91) T ss_dssp CCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECS T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEC T ss_conf 6999999999999984998799998997899968 No 201 >>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} (A:) Probab=20.44 E-value=58 Score=13.81 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=50.9 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH--HHHHHHHHHHHHHH Q ss_conf 9726999866522353522344678998888235799999999707751898505445345325--89999999999853 Q gi|254780676|r 84 KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG--AQHFAEVISAIRES 161 (329) Q Consensus 84 ~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG--A~hfa~~I~~Ir~~ 161 (329) +.+-+|.++||+ ..+.+.-.++.+.++..+-..+|++. ||-|.| +..+.+.++.+.+. T Consensus 3 ~~~~~i~~isD~----------------H~~~~~~~~~~~~~~~~~~d~vi~~G----Dl~d~~~~~~~~~~~~~~l~~~ 62 (228) T 1uf3_A 3 RTVRYILATSNP----------------XGDLEALEKFVKLAPDTGADAIALIG----NLXPKAAKSRDYAAFFRILSEA 62 (228) T ss_dssp CCCCEEEEEECC----------------TTCHHHHHHHHTHHHHHTCSEEEEES----CSSCTTCCHHHHHHHHHHHGGG T ss_pred CCCCEEEEEECC----------------CCCHHHHHHHHHHHHHHCCCEEEECC----CCCCCCCCCHHHHHHHHHHHCC T ss_conf 754589999568----------------78999999999987770999999899----8898876525888753000011 Q ss_pred CCCCEEEEECCCCCCCHHH Q ss_conf 3586899815462344689 Q gi|254780676|r 162 APSTTIEVLTPDFLRKPHA 180 (329) Q Consensus 162 ~P~~~IEvLiPDf~G~~~a 180 (329) ...+ +.+| ||.|. T Consensus 63 ~~pv---~~i~---GNHD~ 75 (228) T 1uf3_A 63 HLPT---AYVP---GPQDA 75 (228) T ss_dssp CSCE---EEEC---CTTSC T ss_pred CCEE---EEEE---CCCCC T ss_conf 5169---9996---78887 No 202 >>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276) Probab=20.31 E-value=58 Score=13.79 Aligned_cols=178 Identities=12% Similarity=0.063 Sum_probs=107.6 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CCC---------------------HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8823579999999970775189850544534--532---------------------58999999999985335868998 Q gi|254780676|r 113 LDPQEPENISWAVRSMKLSHVVITSVDRDDL--DDG---------------------GAQHFAEVISAIRESAPSTTIEV 169 (329) Q Consensus 113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--~Dg---------------------GA~hfa~~I~~Ir~~~P~~~IEv 169 (329) -|.+.-.+++++++.-|..-|-.-.-.-|.| ++. +...|....+..++. .+.+ T Consensus 32 g~~e~a~~~i~~a~~aGadavKfQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~----Gi~~ 107 (276) T 2wqp_A 32 GSLKTAFEXVDAAYNAGAEVVKHQTHIVEDEXSDEAKQVIPGNADVSIYEIXERCALNEEDEIKLKEYVESK----GXIF 107 (276) T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT----TCEE T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHCHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHC----CCCC T ss_conf 769999999999998599999921747278628666642214553322001110000211567899987512----4433 Q ss_pred ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH Q ss_conf 15462344689998741070233201383000275638970358999999999970891670140488764206889999 Q gi|254780676|r 170 LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL 249 (329) Q Consensus 170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~ 249 (329) ++.=| +.++++.+.+.++|+|- | .+.=-..+.+|+.+.+.+.-+.-++|.. |.+|+.++ T Consensus 108 ~st~~--d~~~v~~~~~~~v~~~K------------I--~S~~~~n~~LL~~~a~tgkPvilstG~~-----t~~ei~~A 166 (276) T 2wqp_A 108 ISTLF--SRAAALRLQRXDIPAYK------------I--GSGECNNYPLIKLVASFGKPIILSTGXN-----SIESIKKS 166 (276) T ss_dssp EEEEC--SHHHHHHHHHHTCSCEE------------E--CGGGTTCHHHHHHHHTTCSCEEEECTTC-----CHHHHHHH T ss_pred CCCCC--CCCHHHHHCCCCCCHHC------------C--CCCCCCCHHHHHHHHHCCCCEEECCCCC-----CCCCCCCE T ss_conf 33456--44132220133656400------------0--3300133388765675067401024432-----21010000 Q ss_pred HHHHHHCCCCEEEC---CHHCCCCC-------------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEE---------CCC Q ss_conf 99999669939975---02227861-------------007800023846999999999974962434---------048 Q gi|254780676|r 250 MDDLRTADVDFLTM---GQYLQPTR-------------KHHKVESFVTPQDFKSYETIAYSKGFLMVS---------ASP 304 (329) Q Consensus 250 l~DLr~~gvdilTi---GQYL~Ps~-------------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~---------SgP 304 (329) +.-+++.|.+++-+ ..|--|-. -++||.-|-+-..-...--.|..+|-..++ .|| T Consensus 167 v~~i~~~g~~~viLhC~s~yp~~~~~~nL~~i~~lk~~~~~pVIG~sdHs~~~~~~~aAva~GA~viekh~tld~~~~g~ 246 (276) T 2wqp_A 167 VEIIREAGVPYALLHCTNIYPTPYEDVRLGGXNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSILERHFTDRXDRPGP 246 (276) T ss_dssp HHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCCEEEEEBCSCTTCCST T ss_pred EEEHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCC T ss_conf 00012026664378850688653211013443455554133513404520011134788844231025434653034888 Q ss_pred CCCCCHHHHHH Q ss_conf 30010318999 Q gi|254780676|r 305 LTRSSYHAGDD 315 (329) Q Consensus 305 lVRSSY~A~e~ 315 (329) =--.|-.-++. T Consensus 247 D~~~sl~p~el 257 (276) T 2wqp_A 247 DIVCSXNPDTF 257 (276) T ss_dssp TGGGCBCHHHH T ss_pred CCCCCCCCHHH T ss_conf 76453331036 No 203 >>1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} (A:) Probab=20.14 E-value=59 Score=13.77 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCEEEEEEEC------HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHH Q ss_conf 5899999999997089167014048876420------6889999999996699399750222786100780002384699 Q gi|254780676|r 212 YFHSLRLLQRVKELDPLIFTKSGIMLGLGET------RNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDF 285 (329) Q Consensus 212 Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt------~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF 285 (329) |..|.++++.++..+.+.. .-...+.+|. .++-++-|..=.++|+|++. .|=.+.++.| T Consensus 124 ~~~s~~Li~~~~~~~~~~~--~igva~~pe~hp~~~~~~~~~~~L~~K~~aGa~~~i-------------TQ~~fd~~~~ 188 (296) T 1v93_A 124 FRYAAELVALIRERYGDRV--SVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAI-------------TQLFFNNAHY 188 (296) T ss_dssp CSSHHHHHHHHHHHHGGGS--EEEEEECTTCCTTCSSHHHHHHHHHHHHHTTCSEEE-------------EEECSSHHHH T ss_pred CCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE-------------EEEECCHHHH T ss_conf 0149999998787449874--436666887686412489999999999973677478-------------7531468999 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999999974962 Q gi|254780676|r 286 KSYETIAYSKGFL 298 (329) Q Consensus 286 ~~~~~~a~~~Gf~ 298 (329) ..|.+...+.|+. T Consensus 189 ~~~~~~~r~~gi~ 201 (296) T 1v93_A 189 FGFLERARRAGIG 201 (296) T ss_dssp HHHHHHHHHTTCC T ss_pred HHHHHHHHHCCCC T ss_conf 9999999974999 No 204 >>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} (A:) Probab=20.13 E-value=59 Score=13.77 Aligned_cols=138 Identities=10% Similarity=0.019 Sum_probs=64.6 Q ss_pred HHHHHHHHHHCCCEEEEECCCCCC---C--CCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCC---CCHH-HHHHHH Q ss_conf 999999997077518985054453---4--532589999999999853358----68998154623---4468-999874 Q gi|254780676|r 119 ENISWAVRSMKLSHVVITSVDRDD---L--DDGGAQHFAEVISAIRESAPS----TTIEVLTPDFL---RKPH-ALEKVV 185 (329) Q Consensus 119 ~rvA~av~~l~Lk~vViTSV~RDD---L--~DgGA~hfa~~I~~Ir~~~P~----~~IEvLiPDf~---G~~~-al~~v~ 185 (329) .+..+..+.||.+++|+-+..... . .+..-..+++.++++-+.... ..+|...+.+. .... .++.+- T Consensus 107 ~~~~~~a~~lga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~e~~~~~~~~~~~~~~~~~~~~~ 186 (287) T 3kws_A 107 KEIIAAAGELGSTGVIIVPAFNGQVPALPHTXETRDFLCEQFNEXGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCR 186 (287) T ss_dssp HHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHH T ss_conf 99999999809984775145557788887889999999999999999999709879999667768801157898888899 Q ss_pred HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC---CCEEEEEEECHHHHHHHHHHHHHCCCCE-E Q ss_conf 10702332013830002756389703589999999999708916701---4048876420688999999999669939-9 Q gi|254780676|r 186 SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK---SGIMLGLGETRNEILQLMDDLRTADVDF-L 261 (329) Q Consensus 186 ~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK---SGlMvGLGEt~eEi~e~l~DLr~~gvdi-l 261 (329) ..+...+.=++.+. .....+- ...+.++.....-..+..| .+--+.+||-.-+..+.+.-|++.|.+. + T Consensus 187 ~~~~~~~gl~~D~~----h~~~~~~---~~~~~~~~~~~~i~~iH~~D~~~~~~~~~G~G~id~~~~~~~L~~~gy~g~~ 259 (287) T 3kws_A 187 DINNPGVRCXGDFW----HXTWEET---SDXGAFISGGEYLQHVHVASRKRRSXPGEDGDADNYINGFKGLKXIGYNNYV 259 (287) T ss_dssp HHCCTTEEEEEEHH----HHHHHCS---CHHHHHHHHGGGEEEEEECCTTTSCSTTTTGGGCCCHHHHHHHHHTTCCSEE T ss_pred HHHCCCCCCEECHH----HHHHHHC---CHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 87403676011147----7778613---4088998506726699987799998899998752299999999985996289 Q ss_pred EC Q ss_conf 75 Q gi|254780676|r 262 TM 263 (329) Q Consensus 262 Ti 263 (329) ++ T Consensus 260 ~~ 261 (287) T 3kws_A 260 SF 261 (287) T ss_dssp EE T ss_pred EE T ss_conf 99 No 205 >>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} (A:1-91,A:153-349) Probab=20.09 E-value=59 Score=13.76 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=32.1 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC--------------C-CCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 82357999999997077518985054--------------4-5345325899999999998533586 Q gi|254780676|r 114 DPQEPENISWAVRSMKLSHVVITSVD--------------R-DDLDDGGAQHFAEVISAIRESAPST 165 (329) Q Consensus 114 D~~EP~rvA~av~~l~Lk~vViTSV~--------------R-DDL~DgGA~hfa~~I~~Ir~~~P~~ 165 (329) |...-..-..-++.||.++|-|+.+- + ++=.=|..+.|.+-|.+.+++.=.+ T Consensus 19 ~~~~~~~~l~~~~~~g~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~~v~~~h~~gi~v 85 (288) T 1ht6_A 19 WYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQA 85 (288) T ss_dssp HHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEE T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 8999999359999749998996988878999897856767778100789999999999999888989 Done!