Query         gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 329
No_of_seqs    137 out of 1373
Neff          3.9 
Searched_HMMs 33803
Date          Wed Jun  1 14:46:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780676.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1r30_A Biotin synthase; SAM r  99.7 3.5E-17   1E-21  142.5   8.7  270   33-309     9-288 (369)
  2 >3iix_A Biotin synthetase, put  99.7 1.5E-16 4.4E-21  138.1   8.8  265   40-313     6-277 (348)
  3 >2a5h_A L-lysine 2,3-aminomuta  99.5 1.7E-13   5E-18  116.4  12.1  212   68-286     3-218 (248)
  4 >1olt_A Oxygen-independent cop  99.5   4E-14 1.2E-18  120.9   7.6  274   37-314     6-299 (364)
  5 >3c8f_A Pyruvate formate-lyase  99.1 9.5E-10 2.8E-14   90.0   9.7  209   89-300    22-244 (245)
  6 >2yx0_A Radical SAM enzyme; pr  98.9 1.7E-08 5.1E-13   81.1  11.0  212   85-300    70-310 (342)
  7 >1tv8_A MOAA, molybdenum cofac  98.8 4.3E-07 1.3E-11   71.2  14.0  197   90-294    18-225 (313)
  8 >2qgq_A Protein TM_1862; alpha  97.8 4.6E-05 1.4E-09   56.9   6.1  104  194-297     7-117 (122)
  9 >2z2u_A UPF0026 protein MJ0257  97.3 0.00099 2.9E-08   47.5   7.3  187  114-312   112-307 (311)
 10 >3ivs_A Homocitrate synthase,   96.4   0.057 1.7E-06   35.0  10.1  143  110-264    55-200 (311)
 11 >3can_A Pyruvate-formate lyase  95.7    0.11 3.4E-06   32.9   8.9  148  152-303    22-182 (182)
 12 >2qgq_A Protein TM_1862; alpha  95.4    0.28 8.2E-06   30.2  11.5   99   85-186     3-109 (112)
 13 >3ewb_X 2-isopropylmalate synt  95.3     0.3 8.9E-06   30.0  10.6  149  107-264    18-170 (293)
 14 >3chv_A Prokaryotic domain of   95.2    0.32 9.5E-06   29.7  12.6  151  109-269    26-184 (284)
 15 >1nvm_A HOA, 4-hydroxy-2-oxova  95.1    0.13 3.8E-06   32.6   7.6  157  110-292    24-187 (273)
 16 >1ydn_A Hydroxymethylglutaryl-  94.7     0.4 1.2E-05   29.1   9.1  147  110-264    20-175 (295)
 17 >2ftp_A Hydroxymethylglutaryl-  94.2    0.36 1.1E-05   29.4   8.1  147  110-264    24-179 (302)
 18 >1ydo_A HMG-COA lyase; TIM-bar  93.5    0.24   7E-06   30.7   6.1  154  102-264    14-177 (307)
 19 >3eeg_A 2-isopropylmalate synt  93.0    0.89 2.6E-05   26.6  11.3  159  111-288    23-185 (325)
 20 >3ble_A Citramalate synthase f  92.5       1   3E-05   26.2   8.5  150  110-264    35-189 (337)
 21 >2ztj_A Homocitrate synthase;   92.4     1.1 3.1E-05   26.1   9.2  154   99-264     8-164 (277)
 22 >1rqb_A Transcarboxylase 5S su  91.5    0.45 1.3E-05   28.7   5.4  143  116-264    47-195 (359)
 23 >3dxi_A Putative aldolase; TIM  88.6    0.64 1.9E-05   27.7   4.2  141  110-264    18-163 (267)
 24 >1sr9_A 2-isopropylmalate synt  87.4     1.4   4E-05   25.3   5.2  162   99-264    76-252 (370)
 25 >2nx9_A Oxaloacetate decarboxy  84.3     3.6 0.00011   22.3   8.8  162  113-299   124-318 (353)
 26 >3bg3_A Pyruvate carboxylase,   81.9     4.1 0.00012   22.0   5.6   22  242-263   194-215 (398)
 27 >3dmy_A Protein FDRA; predicte  81.2     1.5 4.3E-05   25.1   3.2  123   74-207    32-166 (174)
 28 >3fdg_A Dipeptidase AC. metall  80.9     4.8 0.00014   21.5   7.9  156  120-298   147-333 (355)
 29 >2qs8_A XAA-Pro dipeptidase; a  79.9     5.2 0.00015   21.2   7.2   66  240-307    14-82  (119)
 30 >1yht_A DSPB; beta barrel, hyd  78.0     5.9 0.00017   20.8   7.4  147  113-268    30-221 (367)
 31 >3c6c_A 3-keto-5-aminohexanoat  78.0     5.9 0.00017   20.8  12.1  141  110-258    41-204 (316)
 32 >2hsa_B 12-oxophytodienoate re  77.5     2.8 8.4E-05   23.1   3.7   34  240-273   262-297 (402)
 33 >1thf_D HISF protein; thermoph  76.6    0.56 1.6E-05   28.1  -0.1  186  112-314    26-212 (253)
 34 >2p9b_A Possible prolidase; pr  75.9     6.6  0.0002   20.5   6.3   81  115-201    20-109 (175)
 35 >3cpr_A Dihydrodipicolinate sy  74.5     7.2 0.00021   20.2   9.3  102  176-297    38-143 (221)
 36 >2cw6_A Hydroxymethylglutaryl-  73.6     7.6 0.00022   20.1   7.1   35   54-104    29-63  (298)
 37 >1to3_A Putative aldolase YIHT  72.4       8 0.00024   19.9  10.8  195   52-267    45-257 (304)
 38 >2epl_X N-acetyl-beta-D-glucos  71.5     8.4 0.00025   19.7   7.3  139  114-267    17-188 (318)
 39 >1zlp_A PSR132, petal death pr  69.1     9.4 0.00028   19.4  11.6  188  120-317    50-272 (318)
 40 >2f6u_A GGGPS, (S)-3-O-geranyl  68.2     4.8 0.00014   21.5   3.0  141  113-267    17-221 (234)
 41 >2hk0_A D-psicose 3-epimerase;  67.6     5.9 0.00017   20.9   3.4  170  117-293   108-300 (309)
 42 >3be7_A Zn-dependent arginine   66.9      10 0.00031   19.1   7.1   62  241-302    27-89  (132)
 43 >1o5k_A DHDPS, dihydrodipicoli  66.8      10 0.00031   19.1   5.4   80  112-194    90-172 (306)
 44 >1gte_A Dihydropyrimidine dehy  65.8      11 0.00032   18.9   9.9  168  140-315    88-264 (280)
 45 >2uvj_A TOGB, ABC type peripla  65.0       9 0.00027   19.5   3.9   58  147-204    18-77  (173)
 46 >1req_B Methylmalonyl-COA muta  63.7      12 0.00035   18.7   6.5   72  116-195    73-144 (163)
 47 >3dhu_A Alpha-amylase; structu  62.8      12 0.00037   18.6   5.6   20  250-269   297-316 (351)
 48 >3gnh_A L-lysine, L-arginine c  62.7      12 0.00037   18.6   6.8   60  240-302    12-75  (118)
 49 >1vkf_A Glycerol uptake operon  62.2     8.3 0.00025   19.8   3.3  107  143-251    37-169 (188)
 50 >1ps9_A 2,4-dienoyl-COA reduct  61.6      13 0.00038   18.4   7.4  113  148-267   191-313 (333)
 51 >3eb2_A Putative dihydrodipico  60.3      14  0.0004   18.3   8.8   92  172-272    22-116 (245)
 52 >2qiw_A PEP phosphonomutase; N  59.6      14 0.00041   18.2   7.4   85  178-263    96-187 (255)
 53 >1eix_A Orotidine 5'-monophosp  59.2      11 0.00033   18.8   3.6   54  215-268   172-225 (245)
 54 >3hbl_A Pyruvate carboxylase;   59.0      14 0.00042   18.1   8.2   72  222-295   262-351 (389)
 55 >1f76_A Dihydroorotate dehydro  57.6      15 0.00045   18.0   8.3  125  183-313   160-305 (336)
 56 >2iw0_A Chitin deacetylase; hy  56.7      16 0.00046   17.9   8.0  190   41-269    41-240 (254)
 57 >2bhu_A Maltooligosyltrehalose  55.9      16 0.00047   17.8   5.6   16  151-166   173-188 (355)
 58 >3l12_A Putative glycerophosph  55.8      16 0.00047   17.8   6.0  127  116-264   108-239 (256)
 59 >1z41_A YQJM, probable NADH-de  55.3      16 0.00048   17.7   6.4   35  238-272   223-257 (338)
 60 >3feq_A Putative amidohydrolas  54.9      17 0.00049   17.7   6.4   69  234-302    29-98  (140)
 61 >1zy9_A Alpha-galactosidase; T  54.3      17  0.0005   17.6   4.4   57  112-168    16-77  (196)
 62 >2gt1_A Lipopolysaccharide hep  54.0      17 0.00051   17.6   4.7   79  146-230    12-90  (165)
 63 >2qf7_A Pyruvate carboxylase p  53.8      17 0.00051   17.5   8.0  169  114-295   158-350 (388)
 64 >1yx1_A Hypothetical protein P  52.9      15 0.00044   18.0   3.3  136  116-260    84-225 (264)
 65 >2ojp_A DHDPS, dihydrodipicoli  52.8      18 0.00053   17.4   7.2   26  114-139    81-106 (292)
 66 >3flk_A Tartrate dehydrogenase  52.2      18 0.00054   17.4   4.8   61  113-173   163-225 (364)
 67 >1x0l_A Homoisocitrate dehydro  51.8      18 0.00055   17.3   4.5   62  112-173   140-203 (333)
 68 >1w5q_A Delta-aminolevulinic a  51.5      19 0.00055   17.3   4.8  204  115-322    32-303 (304)
 69 >2aaa_A Alpha-amylase; glycosi  51.2      19 0.00056   17.3   4.7   55  114-168    41-117 (290)
 70 >3fa4_A 2,3-dimethylmalate lya  51.2      19 0.00056   17.3  10.4  139  120-263    29-189 (241)
 71 >2ehh_A DHDPS, dihydrodipicoli  49.6      20 0.00059   17.1   8.4   26  114-139    80-105 (294)
 72 >2qul_A D-tagatose 3-epimerase  48.9     7.2 0.00021   20.2   1.2  206   50-292    45-281 (290)
 73 >1pv8_A Delta-aminolevulinic a  48.3      21 0.00061   17.0   6.0  202  114-319    32-302 (305)
 74 >2z61_A Probable aspartate ami  48.1     9.3 0.00028   19.4   1.7  104  182-287    22-133 (144)
 75 >3gka_A N-ethylmaleimide reduc  48.1      11 0.00032   18.9   2.0  138  109-267   147-319 (361)
 76 >1vli_A Spore coat polysacchar  47.6      21 0.00063   16.9   6.5  130  114-268    42-195 (300)
 77 >2h8z_A Xenobiotic reductase A  47.2      22 0.00064   16.8  13.4  163  145-312    75-265 (315)
 78 >2yyu_A Orotidine 5'-phosphate  46.9      13 0.00039   18.4   2.3   57  142-198    31-92  (246)
 79 >2wvv_A Alpha-L-fucosidase; al  46.7      20 0.00059   17.1   3.2  215   54-295    80-340 (351)
 80 >1lt8_A Betaine-homocysteine m  46.2      22 0.00066   16.7   6.9   20  280-299   276-295 (406)
 81 >3i09_A Periplasmic branched-c  46.0      22 0.00067   16.7   9.9  119  115-254     3-122 (191)
 82 >3khd_A Pyruvate kinase; malar  45.7      23 0.00067   16.7   8.0   38  138-176    74-114 (288)
 83 >1pc2_A Mitochondria fission p  45.7     5.7 0.00017   20.9   0.3   41  276-318     5-55  (64)
 84 >3a1c_A Probable copper-export  44.6      24  0.0007   16.6   6.4   24  151-176    46-69  (165)
 85 >2w7y_A FCSSBP, probable sugar  44.2      24 0.00071   16.5   4.7   94  136-229    44-147 (185)
 86 >1g94_A Alpha-amylase; beta-al  43.7      24 0.00072   16.5   6.9  115  162-290     1-129 (277)
 87 >3hqn_D Pyruvate kinase, PK; T  43.6      24 0.00072   16.5   7.6   56  138-193    48-112 (261)
 88 >3bi8_A Dihydrodipicolinate sy  43.3      25 0.00073   16.4   8.1   25  114-138    81-105 (291)
 89 >1vdh_A Muconolactone isomeras  42.9     5.9 0.00018   20.8   0.0   68  236-308    76-150 (249)
 90 >3e96_A Dihydrodipicolinate sy  42.3      25 0.00075   16.3   8.3  105  174-297    32-138 (217)
 91 >1m65_A Hypothetical protein Y  42.3      24 0.00072   16.5   3.1  179  116-309    18-197 (245)
 92 >2e28_A Pyruvate kinase, PK; a  42.2      26 0.00076   16.3   7.0  148  137-302    30-216 (243)
 93 >2vc6_A MOSA, dihydrodipicolin  42.1      26 0.00076   16.3   8.4   29  235-263    72-101 (236)
 94 >1h5y_A HISF; histidine biosyn  42.0     2.2 6.4E-05   23.9  -2.3  136  113-265    30-175 (253)
 95 >1xg4_A Probable methylisocitr  41.8      26 0.00077   16.3  10.8  142  121-263    29-186 (295)
 96 >3lab_A Putative KDPG (2-keto-  41.5      26 0.00077   16.3   6.6  167  112-316    21-201 (217)
 97 >2hmc_A AGR_L_411P, dihydrodip  41.5      26 0.00078   16.3  11.4  128  173-321    45-177 (235)
 98 >2rfg_A Dihydrodipicolinate sy  41.1      27 0.00078   16.2   8.1   46  213-261    53-99  (243)
 99 >1oy0_A Ketopantoate hydroxyme  40.9      27 0.00079   16.2   3.3  120   53-194    22-155 (234)
100 >2r8w_A AGR_C_1641P; APC7498,   40.3      27 0.00081   16.1   9.0   15  113-127    84-98  (280)
101 >3hgj_A Chromate reductase; TI  39.9      28 0.00082   16.1  13.5  146  111-267   140-321 (349)
102 >1xky_A Dihydrodipicolinate sy  39.8      28 0.00082   16.1   8.1   29  235-263    84-113 (219)
103 >3d3j_A Enhancer of mRNA-decap  39.8      22 0.00065   16.8   2.5  143  106-263    72-240 (306)
104 >3ler_A DHDPS, dihydrodipicoli  39.1      28 0.00084   16.0   8.8   27  114-140    88-114 (301)
105 >3daq_A DHDPS, dihydrodipicoli  39.0      29 0.00084   16.0   7.7   89  173-271    21-113 (229)
106 >1vhn_A Putative flavin oxidor  38.8      15 0.00046   17.9   1.6  129  166-303    64-213 (235)
107 >1u83_A Phosphosulfolactate sy  38.7      29 0.00085   16.0   3.4   24  120-143   140-163 (276)
108 >1oya_A OLD yellow enzyme; oxi  38.4      29 0.00086   15.9   6.0  159  145-305    92-284 (308)
109 >2j13_A Polysaccharide deacety  38.2      29 0.00087   15.9   3.0  165   53-269    68-244 (247)
110 >3ez4_A 3-methyl-2-oxobutanoat  38.1       9 0.00027   19.5   0.3  226   54-322    12-256 (269)
111 >2jbm_A Nicotinate-nucleotide   37.2      30  0.0009   15.8   5.8   90  151-265    20-110 (113)
112 >2dp3_A Triosephosphate isomer  37.0      30  0.0009   15.8   6.3   42  121-162    80-121 (257)
113 >3lkb_A Probable branched-chai  37.0      30  0.0009   15.8   9.0  148  114-286     2-159 (172)
114 >3c7b_B Sulfite reductase, dis  37.0      28 0.00084   16.0   2.7   47   91-137    40-86  (129)
115 >2z8f_A Galacto-N-biose/lacto-  36.7      31 0.00091   15.8   3.6   66  149-214    31-102 (195)
116 >2v9d_A YAGE; dihydrodipicolin  36.6      31 0.00092   15.7   7.8   33  111-143    79-112 (278)
117 >1icp_A OPR1, 12-oxophytodieno  36.3      31 0.00092   15.7   3.5  202   53-268    92-334 (376)
118 >1twu_A Hypothetical protein Y  36.3      31 0.00093   15.7   2.9   36  268-303     1-36  (66)
119 >1ivn_A Thioesterase I; hydrol  36.1      32 0.00093   15.7   8.7   98   87-184     2-121 (190)
120 >1uok_A Oligo-1,6-glucosidase;  36.0      32 0.00094   15.7   4.7   48  115-162    30-92  (206)
121 >2dh2_A 4F2 cell-surface antig  36.0      32 0.00094   15.7   5.6   17  115-131    81-97  (329)
122 >1wzl_A Alpha-amylase II; pull  35.6      32 0.00095   15.6   4.8   56  112-167    93-172 (321)
123 >2iye_A Copper-transporting AT  35.3      15 0.00043   18.1   1.0   81  152-261    43-123 (164)
124 >3b40_A PVDM, probable dipepti  35.2      33 0.00096   15.6   7.3  212   54-304    99-358 (417)
125 >3e49_A Uncharacterized protei  34.8      33 0.00098   15.6   7.7   88  109-199    24-117 (311)
126 >1eh9_A Glycosyltrehalose treh  34.6      33 0.00098   15.5   6.0   26  301-326   282-308 (352)
127 >1a0c_A Xylose isomerase; keto  34.4      33 0.00098   15.6   2.7  199   54-260    82-332 (438)
128 >1gcy_A Glucan 1,4-alpha-malto  34.4      33 0.00099   15.5   5.9   26  144-169    88-113 (337)
129 >3ju2_A Uncharacterized protei  34.1      34   0.001   15.5   6.1  139  116-260    84-244 (284)
130 >1v0z_A Neuraminidase; glycosi  34.0      13  0.0004   18.3   0.7   38   76-113    25-64  (98)
131 >1qho_A Alpha-amylase; glycosi  33.8      34   0.001   15.4   4.7   19  114-132   106-124 (333)
132 >1jg8_A L-ALLO-threonine aldol  33.7      34   0.001   15.4   4.2   51  233-290    45-98  (108)
133 >1h7n_A 5-aminolaevulinic acid  33.6      34   0.001   15.4   5.9  193  114-321    32-305 (307)
134 >2ka6_B Signal transducer and   33.0      26 0.00077   16.3   2.0   32  267-302    12-43  (45)
135 >3flu_A DHDPS, dihydrodipicoli  32.7      36  0.0011   15.3   8.4   36  113-148    86-121 (297)
136 >1lld_A L-lactate dehydrogenas  32.7      36  0.0011   15.3   3.1   34  138-171    91-124 (319)
137 >1e0t_A Pyruvate kinase, PK; p  32.6      36  0.0011   15.3   8.2  163  138-314    30-228 (250)
138 >1ua7_A Alpha-amylase; beta-al  32.1      36  0.0011   15.3   4.9   25  145-169    71-95  (344)
139 >1o94_A Tmadh, trimethylamine   32.0      36  0.0011   15.2   6.2  150  110-267   136-324 (343)
140 >1ypx_A Putative vitamin-B12 i  32.0      36  0.0011   15.2   2.8   55  233-291   290-357 (375)
141 >3i45_A Twin-arginine transloc  31.6      37  0.0011   15.2   8.6  129  116-267     4-135 (200)
142 >2gou_A Oxidoreductase, FMN-bi  31.6      37  0.0011   15.2   3.3   85  179-265   123-226 (323)
143 >3e02_A Uncharacterized protei  31.4      37  0.0011   15.2   9.0  158  109-274    24-214 (311)
144 >3gza_A Putative alpha-L-fucos  31.1      38  0.0011   15.1   5.7   80   51-145    58-138 (345)
145 >2vxh_A Chlorite dismutase; he  30.7      38  0.0011   15.1   4.6   73  232-309    75-156 (251)
146 >3ktw_A SRP19, signal recognit  30.7      38  0.0011   15.1   3.2   32  106-137    32-65  (109)
147 >2qyg_A Ribulose bisphosphate   30.5      22 0.00066   16.8   1.3  141  109-255    28-200 (288)
148 >1vr6_A Phospho-2-dehydro-3-de  30.4      39  0.0011   15.1   6.8  125  113-259    32-157 (265)
149 >3l6w_A Hemocyanin 1; cupredox  30.0      39  0.0012   15.0   4.2   56   77-145    27-88  (200)
150 >1t7l_A 5-methyltetrahydropter  29.5      18 0.00052   17.5   0.7  236   37-282    39-358 (391)
151 >3dz1_A Dihydrodipicolinate sy  29.4      40  0.0012   14.9   8.4  189  113-319    86-298 (313)
152 >1qwg_A PSL synthase;, (2R)-ph  29.0      41  0.0012   14.9   6.0  139  113-268    82-235 (251)
153 >1vzw_A Phosphoribosyl isomera  28.3      39  0.0011   15.1   2.2  168  117-314    33-207 (244)
154 >1l6s_A Porphobilinogen syntha  28.2      42  0.0012   14.8   6.3  199  115-318    32-294 (298)
155 >3dlu_A SRP19, signal recognit  28.1      42  0.0012   14.8   4.5   24  113-136    29-52  (106)
156 >3blx_B Isocitrate dehydrogena  27.8      43  0.0013   14.8   4.6  113   58-173   101-222 (354)
157 >2poc_A D-fructose-6-, isomera  26.4      40  0.0012   15.0   2.0   30  238-267    73-102 (161)
158 >3c9h_A ABC transporter, subst  26.4      45  0.0013   14.6   4.0   57  145-201    41-100 (355)
159 >3eyp_A Putative alpha-L-fucos  26.3      45  0.0013   14.6   9.1   47  118-164    56-119 (327)
160 >1xrs_B D-lysine 5,6-aminomuta  26.2      45  0.0013   14.6   7.1   85  217-326    77-165 (168)
161 >2yxg_A DHDPS, dihydrodipicoli  26.1      46  0.0013   14.6   6.5   80  112-194    78-160 (289)
162 >3cit_A Sensor histidine kinas  25.9      10 0.00031   19.1  -1.0   16   95-110    36-51  (160)
163 >1wpc_A Glucan 1,4-alpha-malto  25.7      46  0.0014   14.5   5.3   22  241-262   109-131 (267)
164 >1tv5_A Dhodehase, dihydroorot  25.5      23 0.00068   16.6   0.7   27  237-263   251-277 (390)
165 >1w1z_A Delta-aminolevulinic a  25.4      47  0.0014   14.5   6.5  201  115-319    32-296 (297)
166 >1i60_A IOLI protein; beta bar  25.3      47  0.0014   14.5   6.8  192   43-269    37-250 (278)
167 >1ulv_A Glucodextranase; GH fa  24.9      48  0.0014   14.4   2.5   26  234-259   229-254 (275)
168 >3hut_A Putative branched-chai  24.7      48  0.0014   14.4   9.8  113  117-251     3-116 (119)
169 >2wkj_A N-acetylneuraminate ly  24.6      48  0.0014   14.4   5.3  106  174-298    31-140 (218)
170 >1j8f_A SIRT2, sirtuin 2, isof  24.5      22 0.00064   16.8   0.4  135  109-268     1-160 (251)
171 >1xxx_A DHDPS, dihydrodipicoli  24.1      49  0.0015   14.3   5.4   48  213-263    67-115 (219)
172 >2btm_A TIM, protein (trioseph  24.1      50  0.0015   14.3   5.5   15  122-136    79-93  (252)
173 >3h5t_A Transcriptional regula  23.9      36  0.0011   15.3   1.4   44  248-298    10-54  (60)
174 >1d2v_C Myeloperoxidase; heme-  23.9      13 0.00038   18.4  -0.9   63  242-312    56-125 (144)
175 >1y8q_A Ubiquitin-like 1 activ  23.5      51  0.0015   14.2   4.6   95  119-230    49-154 (346)
176 >1yya_A Triosephosphate isomer  23.4      51  0.0015   14.2   7.6   15  122-136    79-93  (250)
177 >1ney_A TIM, triosephosphate i  23.3      51  0.0015   14.2   7.1   40  122-161    79-118 (247)
178 >2qv5_A AGR_C_5032P, uncharact  23.2      51  0.0015   14.2   2.8   43  233-275   210-256 (261)
179 >2zkr_o 60S ribosomal protein   23.2      37  0.0011   15.2   1.4   76  249-327    54-130 (133)
180 >1z69_A COG2141, coenzyme F420  23.1      52  0.0015   14.2   3.0   31  233-266   278-308 (327)
181 >1ivd_A Influenza A subtype N2  23.1      42  0.0012   14.8   1.6   35   79-113    93-129 (164)
182 >3gg8_A Pyruvate kinase; malar  22.6      53  0.0016   14.1   6.7   38  138-176    64-104 (277)
183 >1xp3_A Endonuclease IV; NFO,   22.6      53  0.0016   14.1   7.3  180   50-259    56-262 (307)
184 >2z8f_A Galacto-N-biose/lacto-  22.4      53  0.0016   14.1   2.2   45  240-288    20-64  (122)
185 >1w0d_A 3-isopropylmalate dehy  22.3      53  0.0016   14.1   5.5  120   53-173    79-212 (337)
186 >2rbb_A Glyoxalase/bleomycin r  22.2      54  0.0016   14.1   4.3   31  232-262     6-37  (73)
187 >3i3v_A Probable secreted solu  22.2      54  0.0016   14.1   3.4   25  241-265    23-47  (105)
188 >1itu_A Renal dipeptidase; gly  22.1      54  0.0016   14.0  11.3  157  120-298   135-318 (369)
189 >1zco_A 2-dehydro-3-deoxyphosp  22.1      54  0.0016   14.0   6.3  121  114-259    35-159 (262)
190 >2ewd_A Lactate dehydrogenase,  22.0      54  0.0016   14.0   4.2   41  129-169    72-119 (317)
191 >1j0h_A Neopullulanase; beta-a  21.9      54  0.0016   14.0   6.0   18  252-269   319-336 (375)
192 >1xqa_A Glyoxalase/bleomycin r  21.9      47  0.0014   14.4   1.7   27  236-262     5-32  (55)
193 >3epo_A Thiamine biosynthesis   21.5      55  0.0016   14.0   2.8   49  248-308   214-264 (327)
194 >2hfq_A Hypothetical protein;   21.4      41  0.0012   14.9   1.3   27   94-129    71-97  (109)
195 >3c01_E Surface presentation o  21.1      39  0.0011   15.1   1.1   30  283-312    27-56  (62)
196 >1mxg_A Alpha amylase; hyperth  20.9      57  0.0017   13.9   5.6   30  144-174    82-111 (279)
197 >1jqn_A Pepcase, PEPC, phospho  20.8      57  0.0017   13.9   7.5   48  209-258   221-268 (420)
198 >2ck3_D ATP synthase beta chai  20.7      57  0.0017   13.9   3.9   19  167-185   171-189 (280)
199 >1a53_A IGPS, indole-3-glycero  20.6      58  0.0017   13.8   3.9  130  108-268    30-159 (223)
200 >3cuq_A Vacuolar-sorting prote  20.5      58  0.0017   13.8   2.2   30  241-270    55-88  (91)
201 >1uf3_A Hypothetical protein T  20.4      58  0.0017   13.8   3.6   71   84-180     3-75  (228)
202 >2wqp_A Polysialic acid capsul  20.3      58  0.0017   13.8   6.0  178  113-315    32-257 (276)
203 >1v93_A 5,10-methylenetetrahyd  20.1      59  0.0017   13.8  14.1   72  212-298   124-201 (296)
204 >3kws_A Putative sugar isomera  20.1      59  0.0017   13.8   9.1  138  119-263   107-261 (287)
205 >1ht6_A AMY1, alpha-amylase is  20.1      59  0.0017   13.8   5.7   52  114-165    19-85  (288)

No 1  
>>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:)
Probab=99.71  E-value=3.5e-17  Score=142.46  Aligned_cols=270  Identities=13%  Similarity=0.151  Sum_probs=204.2

Q ss_pred             CCCCCCCCCHHHCCCCCCCH--HHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCC
Q ss_conf             88888898824500179986--6899999999749823652578878767508972--6999866522353522344678
Q gi|254780676|r   33 PDTEKMQKPDWIRVRAPVSS--GYKETYNILRSRNLTTVCEEAGCPNIGECWNKNH--ATFMILGAICTRACTFCNVATG  108 (329)
Q Consensus        33 p~~~~~~kP~Wlk~~~p~~~--~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gt--ATFMilG~~CTR~C~FC~V~~G  108 (329)
                      ++.....+.+|+.-+...+.  ...+++.++....++.+.+.+.+++...++....  +.+++...-|..+|.||.+..+
T Consensus         9 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~C~~~C~fC~~~~~   88 (369)
T 1r30_A            9 HDYDIPTTENLYFQGSAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSR   88 (369)
T ss_dssp             ------------------CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTT
T ss_pred             CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             45678747777640146668999999999985999999999999999866989799986877448999987922998341


Q ss_pred             ------CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf             ------99888823579999999970775189850544534532589999999999853358689981546234468999
Q gi|254780676|r  109 ------KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALE  182 (329)
Q Consensus       109 ------~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~  182 (329)
                            ++..++++|-.+.++.++.+|.+++.+++-.= .+.......+.+.++..+.....+.+-...    -..+.++
T Consensus        89 ~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~i~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  163 (369)
T 1r30_A           89 YKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK-NPHERDMPYLEQMVQGVKAMGLEACMTLGT----LSESQAQ  163 (369)
T ss_dssp             SCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS-SCCTTTHHHHHHHHHHHHHTTSEEEEECSS----CCHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCC----CCHHHHH
T ss_conf             89998754557878999999999973997999987358-865269999999999865238445305577----8999999


Q ss_pred             HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             87410702332013830002756389703589999999999708916701404887642068899999999966993997
Q gi|254780676|r  183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT  262 (329)
                      .+.+++.+.+..++++.++.+..++.+.+|++.++.++.+++.|.  .+...+|+|.||+.+|+.++++.+++.|++..+
T Consensus       164 ~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~  241 (369)
T 1r30_A          164 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI--KVCSGGIVGLGETVKDRAGLLLQLANLPTPPES  241 (369)
T ss_dssp             HHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHC--EEECCEEECSSCCHHHHHHHHHHHHSSSSCCSE
T ss_pred             HHHHCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf             998478608975302020122046777889999999999998699--165214836999999999999999865889888


Q ss_pred             CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf             50222786100780002384699999999997496243404830010
Q gi|254780676|r  263 MGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS  309 (329)
Q Consensus       263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS  309 (329)
                      |..+.-.-....+..++..+..++..+.++....+......++.+++
T Consensus       242 i~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (369)
T 1r30_A          242 VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGR  288 (369)
T ss_dssp             EEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSG
T ss_pred             EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECH
T ss_conf             76051068999864446799999999999999997888762686125


No 2  
>>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:)
Probab=99.68  E-value=1.5e-16  Score=138.05  Aligned_cols=265  Identities=15%  Similarity=0.146  Sum_probs=209.2

Q ss_pred             CCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEE-EEECCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf             88245001799866899999999749823652578878767508972699-9866522353522344678998----888
Q gi|254780676|r   40 KPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATF-MILGAICTRACTFCNVATGKPQ----PLD  114 (329)
Q Consensus        40 kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATF-MilG~~CTR~C~FC~V~~G~P~----~~D  114 (329)
                      .++++....+..+.+..+........+.++++.+.|++...++....... +-...-|..+|.||++..+.+.    ...
T Consensus         6 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~gC~~~C~fC~~~~~~~~~~~~~~~   85 (348)
T 3iix_A            6 ILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMT   85 (348)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCC
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             99998658999999999962368557999999999999986799769999998778869989579986668986523145


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             23579999999970775189850544534532589999999999853358689981546234468999874107023320
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH  194 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH  194 (329)
                      ++|-.+.++..+..|...+.++.=+   -...+...+...++.++.....+.+....    -..+.++.+.++|.+.++.
T Consensus        86 ~e~i~~~i~~~~~~g~~~~~~~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~~v~i  158 (348)
T 3iix_A           86 PEEIVERARLAVQFGAKTIVLQSGE---DPYXMPDVISDIVKEIKKMGVAVTLSLGE----WPREYYEKWKEAGADRYLL  158 (348)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEESC---CGGGTTHHHHHHHHHHHTTSCEEEEECCC----CCHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCC---CCCCCHHHHHHHHHHHHCCCHHCCCCCCC----HHHHHHHHHHHHHCEEEEE
T ss_conf             7889999999997188256540265---23452788889988640120100234441----1689999998742627884


Q ss_pred             CCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf             13830-0027563897035899999999997089167014048876-420688999999999669939975022278610
Q gi|254780676|r  195 NLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQPTRK  272 (329)
Q Consensus       195 NiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~  272 (329)
                      ++|+. ++++..++++.++++.++.++.+++.|..  ...++|+|+ ||+.+++.++++-+++.|++.+.+-+|..--..
T Consensus       159 ~les~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~--~~~~~i~g~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  236 (348)
T 3iix_A          159 RHETANPVLHRKLRPDTSFENRLNXLLTLKELGYE--TGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDT  236 (348)
T ss_dssp             CCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCE--EEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTS
T ss_pred             CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHHCEECCCEEEECCCC
T ss_conf             44423345521000033201567777787876531--2410576277656688888899998755334055101235999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH
Q ss_conf             07800023846999999999974962434048300103189
Q gi|254780676|r  273 HHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAG  313 (329)
Q Consensus       273 h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~  313 (329)
                      .+.-..+..|+++..+.............+....+..++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (348)
T 3iix_A          237 PLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPG  277 (348)
T ss_dssp             TTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHCCHH
T ss_conf             75568998989999999999987898672552056451989


No 3  
>>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342)
Probab=99.53  E-value=1.7e-13  Score=116.43  Aligned_cols=212  Identities=14%  Similarity=0.149  Sum_probs=163.9

Q ss_pred             EEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCEEEEECCCCCCC
Q ss_conf             3652578878767508972699986652235352234467899888823579999999970----775189850544534
Q gi|254780676|r   68 TVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM----KLSHVVITSVDRDDL  143 (329)
Q Consensus        68 TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l----~Lk~vViTSV~RDDL  143 (329)
                      .+||.+.||-.+.++......++....-|..+|.||....+.....+..-+..+++.+..+    +.+-+++|.   ++-
T Consensus         3 ~l~e~~~~~~~~~~~~~~~~~~i~~T~~Cn~~C~~C~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~g---gep   79 (248)
T 2a5h_A            3 PLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQSDDSXPXERIDKAIDYIRNTPQVRDVLLSG---GDA   79 (248)
T ss_dssp             TTCTTTSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE---SCT
T ss_pred             CCCCCCCCCCCCCEEECCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC---CCC
T ss_conf             65311135688731333754799841430100451254233576334214999999999998389836999856---985


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             53258999999999985335868998154623446899987410702332013830002756389703589999999999
Q gi|254780676|r  144 DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVK  223 (329)
Q Consensus       144 ~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK  223 (329)
                      .-.+..++++.++++++..+...+-+.+....-..+.+..+..++...++    ....-......+..|.+.++.++.++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~i~~l~  155 (248)
T 2a5h_A           80 LLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNXLKKYH----PVWLNTHFNHPNEITEESTRACQLLA  155 (248)
T ss_dssp             TSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGC----SEEEEECCCSGGGCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             62688999999999970899754888705542461656899998530266----48997214765443034899999999


Q ss_pred             HCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             708916701404887642068899999999966993997502227861007800023846999
Q gi|254780676|r  224 ELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFK  286 (329)
Q Consensus       224 ~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~  286 (329)
                      +.++.+...+.+|.|+||+.+|+.++++.+++.|++.+.+.+|.......+.-.....++++.
T Consensus       156 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~t~~~~~~~~~~~e~~  218 (248)
T 2a5h_A          156 DAGVPLGNQSVLLRGVNDCVHVXKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEII  218 (248)
T ss_dssp             HTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHH
T ss_pred             HCCCEEEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCHHHHHHHH
T ss_conf             779869874616786158778999999999848838999761267752320378899999999


No 4  
>>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364)
Probab=99.51  E-value=4e-14  Score=120.91  Aligned_cols=274  Identities=9%  Similarity=0.082  Sum_probs=188.3

Q ss_pred             CCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-
Q ss_conf             8898824500179986689999999974982365257887876750897269998665223535223446789988882-
Q gi|254780676|r   37 KMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDP-  115 (329)
Q Consensus        37 ~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~-  115 (329)
                      ..+.|+|++.-...++.+..+..   ...++..+....+++...+|..++..+++...-|..+|.||++.......... 
T Consensus         6 ~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGC~~~C~fC~~~~~~~~~~~~~   82 (364)
T 1olt_A            6 IDWDLALIQKYNYSGPRYTSYPT---ALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKA   82 (364)
T ss_dssp             CCCCTTTC-CC------CCSSSC---GGGCBTTCCHHHHHHHHTTCTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHH
T ss_pred             CCCCHHHHHHHCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCHH
T ss_conf             14279999973899998778999---200577899999999996099995399997189898889998825658885519


Q ss_pred             --------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             --------357999999997077518985054453453258999999999985335868998154623446899987410
Q gi|254780676|r  116 --------QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA  187 (329)
Q Consensus       116 --------~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A  187 (329)
                              .|-.+.+......|..++.++.-+--.+++.-..-+.+.|+++....+.....+.+....-+.+.++.+.++
T Consensus        83 ~~~~~~~~~ei~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  162 (364)
T 1olt_A           83 DQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAE  162 (364)
T ss_dssp             HHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             99999999999997766389974699974875165999999999999998657776621479834998727789999737


Q ss_pred             CCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf             702332013830-002756389703589999999999708916701404887-642068899999999966993997502
Q gi|254780676|r  188 KPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG-LGETRNEILQLMDDLRTADVDFLTMGQ  265 (329)
Q Consensus       188 ~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG-LGEt~eEi~e~l~DLr~~gvdilTiGQ  265 (329)
                      |.+.+.-.+||. ++....++.+.+|++-++.++.+++.|... ....+|+| -|||.+++.++++.+++++++.+.|..
T Consensus       163 G~~~i~ig~es~~~~~~~~~~k~~~~~~~~~~i~~~~~~g~~~-v~~~~i~g~p~et~~~~~~~l~~~~~~~~~~~~i~~  241 (364)
T 1olt_A          163 GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTS-TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFN  241 (364)
T ss_dssp             TCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCS-CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9987998368686788866406687899999999999842553-403404779984267789999999840898334431


Q ss_pred             HCC-C-CCCCCC---CCCCCC----HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf             227-8-610078---000238----469999999999749624340483001031899
Q gi|254780676|r  266 YLQ-P-TRKHHK---VESFVT----PQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD  314 (329)
Q Consensus       266 YL~-P-s~~h~p---V~ryv~----P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e  314 (329)
                      |.. | |..+..   ......    ...+....+...+.|+..+.....++...-...
T Consensus       242 ~~p~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (364)
T 1olt_A          242 YAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAV  299 (364)
T ss_dssp             CCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETTEEECTTSHHHH
T ss_pred             CEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
T ss_conf             1007842776623322235205899999999999999769311234431367713455


No 5  
>>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:)
Probab=99.08  E-value=9.5e-10  Score=89.99  Aligned_cols=209  Identities=9%  Similarity=0.037  Sum_probs=161.3

Q ss_pred             EEEECCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             9986652235352234467----899888823579999999970775189850544534532589999999999853358
Q gi|254780676|r   89 FMILGAICTRACTFCNVAT----GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS  164 (329)
Q Consensus        89 FMilG~~CTR~C~FC~V~~----G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~  164 (329)
                      ++....-|.-+|.||....    +....++.++.....+.+.+.+...+++.+..- .-|--....+...++.+++.  +
T Consensus        22 ~i~~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-Gep~l~~~~~~~l~~~~~~~--~   98 (245)
T 3c8f_A           22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRACKKE--G   98 (245)
T ss_dssp             EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGGGHHHHHHHHHHHHTT--T
T ss_pred             EEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHH--C
T ss_conf             99986896887989998033186799178899999999999998515886687156-77442678999999998863--5


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHH
Q ss_conf             68998154623446899987410702332013830002756389703589999999999708916701404887642068
Q gi|254780676|r  165 TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRN  244 (329)
Q Consensus       165 ~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~e  244 (329)
                      ..+.+++--..-+.+.++.+..++.+.+...+++...-....+.+.++++.++.|+..++.+..+...+-++.|.+++.+
T Consensus        99 ~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~  178 (245)
T 3c8f_A           99 IHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDD  178 (245)
T ss_dssp             CCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH
T ss_conf             71466137731144555654213321011450010067888762733266676654542255513776632389889999


Q ss_pred             HHHHHHHHHHHCCCCEEECCHHCCCCC----------CCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             899999999966993997502227861----------00780002384699999999997496243
Q gi|254780676|r  245 EILQLMDDLRTADVDFLTMGQYLQPTR----------KHHKVESFVTPQDFKSYETIAYSKGFLMV  300 (329)
Q Consensus       245 Ei~e~l~DLr~~gvdilTiGQYL~Ps~----------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V  300 (329)
                      ++.++++-+++.|.+...--+.+.|..          .+++..+-...+.++.+.+++.+.||..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~v~  244 (245)
T 3c8f_A          179 SAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM  244 (245)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             999999999857997558871476256424766285454348998999999999999998599277


No 6  
>>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:)
Probab=98.93  E-value=1.7e-08  Score=81.12  Aligned_cols=212  Identities=14%  Similarity=0.097  Sum_probs=150.8

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCC----CCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH----------
Q ss_conf             7269998665223535223446789----9888---8235799999999707751898505445345325----------
Q gi|254780676|r   85 NHATFMILGAICTRACTFCNVATGK----PQPL---DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG----------  147 (329)
Q Consensus        85 gtATFMilG~~CTR~C~FC~V~~G~----P~~~---D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG----------  147 (329)
                      +..-++....-|.-+|.||.+..+.    ....   ++++-..-+..+...+.+..++++....++..+|          
T Consensus        70 ~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
T 2yx0_A           70 RCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISL  149 (342)
T ss_dssp             GEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECS
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             44887684125277798899988777775554555798999999999999987653267530267777514875799946


Q ss_pred             ------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCC---CCCCCHHHHHHH
Q ss_conf             ------899999999998533586899815462344689998741070233201383-0002756---389703589999
Q gi|254780676|r  148 ------AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLM---VRPGARYFHSLR  217 (329)
Q Consensus       148 ------A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~---VRp~a~Y~rSL~  217 (329)
                            ..++.+.++.+++...  .+-+.++.+.-..+....+..++.+.++=-++. .+..+..   ......|++-++
T Consensus       150 ~gep~~~~~~~~~~~~~~~~~~--~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~~~~~~~~~~~~~~~~~~~~~~  227 (342)
T 2yx0_A          150 SGEPMLYPYMGDLVEEFHKRGF--TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILR  227 (342)
T ss_dssp             SSCGGGSTTHHHHHHHHHHTTC--EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             8775454409999999986397--28995488772589998864257757996278999899998718777778999999


Q ss_pred             HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999999708916701404887642068899999999966993997502227-8-61007800023846999999999974
Q gi|254780676|r  218 LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVESFVTPQDFKSYETIAYSK  295 (329)
Q Consensus       218 vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~ryv~P~eF~~~~~~a~~~  295 (329)
                      .++.+++.+.  .+...+++.-||+++|+.++++-+.+.|++.+++-||.. | ++...--..+.+++++.++.+...+.
T Consensus       228 ~i~~l~~~g~--~v~~~~~~~~g~n~~~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (342)
T 2yx0_A          228 FLELMRDLPT--RTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKH  305 (342)
T ss_dssp             HHHHHTTCSS--EEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCC--CEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999996699--88999998689887889999999987499889986525568860112401499889999999999987


Q ss_pred             CCCEE
Q ss_conf             96243
Q gi|254780676|r  296 GFLMV  300 (329)
Q Consensus       296 Gf~~V  300 (329)
                      +....
T Consensus       306 ~~~~~  310 (342)
T 2yx0_A          306 LPGYH  310 (342)
T ss_dssp             CTTEE
T ss_pred             CCCCE
T ss_conf             26966


No 7  
>>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313)
Probab=98.78  E-value=4.3e-07  Score=71.24  Aligned_cols=197  Identities=11%  Similarity=0.149  Sum_probs=152.7

Q ss_pred             EEECCCCCCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             98665223535223446789---------988882357999999997077518985054453453258999999999985
Q gi|254780676|r   90 MILGAICTRACTFCNVATGK---------PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRE  160 (329)
Q Consensus        90 MilG~~CTR~C~FC~V~~G~---------P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~  160 (329)
                      ....+.|.-+|.||......         +..++.+|-.+.++..+..+...++++.=.--     -...|.+-|+.+++
T Consensus        18 i~~t~~Cn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GGEP~-----l~~~~~~~i~~~~~   92 (313)
T 1tv8_A           18 LSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPL-----MRRDLDVLIAKLNQ   92 (313)
T ss_dssp             EECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGG-----GSTTHHHHHHHHTT
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-----CCCHHHHHHHHHHH
T ss_conf             9842401787968897500677776576103589999999999999769819974798400-----26106999998640


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf             335868998154623446899987410702332013830-002756389-703589999999999708916701404887
Q gi|254780676|r  161 SAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRP-GARYFHSLRLLQRVKELDPLIFTKSGIMLG  238 (329)
Q Consensus       161 ~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG  238 (329)
                      ..+...+-+.+... -..+.+..+++++.+.+...+++. +..+..++. ...|++.++.++.+++.|..  ....+++.
T Consensus        93 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~isi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~--~~~~~~~~  169 (313)
T 1tv8_A           93 IDGIEDIGLTTNGL-LLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN--VKVNVVIQ  169 (313)
T ss_dssp             CTTCCEEEEEECST-THHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCE--EEEEEEEC
T ss_pred             CCCCCCEECCCCCC-CCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHCCCC--EEEEEEEC
T ss_conf             25443100133312-3406899999839998872255788888756200477521012689999985998--33636861


Q ss_pred             EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             64206889999999996699399750222786100780002384699999999997
Q gi|254780676|r  239 LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYS  294 (329)
Q Consensus       239 LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~  294 (329)
                      .|++.+++.++++-+.+.|++.+.+..+.........-.....++.+.........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (313)
T 1tv8_A          170 KGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE  225 (313)
T ss_dssp             TTTTGGGHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             67550012899999985274302325520554555332246778999888887435


No 8  
>>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:113-234)
Probab=97.82  E-value=4.6e-05  Score=56.89  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             HCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-
Q ss_conf             01383-00027563897035899999999997089167014048876-42068899999999966993997502227-8-
Q gi|254780676|r  194 HNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-  269 (329)
Q Consensus       194 HNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-  269 (329)
                      =.+|| .++..+.+..+++.++.++.++.++++|+.+...+.+|+|+ |||+|++.++++.+.+.+.|.+++.+|.. | 
T Consensus         7 iGieS~~~~vl~~~~r~~~~~~~~~~~~~l~~~g~~~~i~~~~i~GlPget~e~~~~t~~~l~~l~~d~i~~~~~~~~~g   86 (122)
T 2qgq_A            7 VPVQHGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEG   86 (122)
T ss_dssp             CCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC---
T ss_pred             CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHCCEEEEHHH
T ss_conf             23344667777776437634432357767877489963887787617988737899989998764988100210232222


Q ss_pred             CCCCCCCCCCCCHHH---HHHHHHHHHHCCC
Q ss_conf             610078000238469---9999999997496
Q gi|254780676|r  270 TRKHHKVESFVTPQD---FKSYETIAYSKGF  297 (329)
Q Consensus       270 s~~h~pV~ryv~P~e---F~~~~~~a~~~Gf  297 (329)
                      |+-+-...++..+..   ++.+.....++|+
T Consensus        87 T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (122)
T 2qgq_A           87 TVAFNLKEKVDPEXAKRRQEELLLLQAEISN  117 (122)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             0120000124502346677776776530112


No 9  
>>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:)
Probab=97.32  E-value=0.00099  Score=47.50  Aligned_cols=187  Identities=13%  Similarity=0.162  Sum_probs=111.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             82357999999997077518985054453453258999999999985335868998154623446899987410702332
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN  193 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n  193 (329)
                      ...+...........+.+++|+++----=+    ..+|.+.++.+++....+.|  .+-...-.......+.....++..
T Consensus       112 ~~~~~i~~~~~~~~~~~~~~~~~~GGepll----~~~~~~~~~~~~~~~~~~~i--~TNG~~~~~~~~~~l~~~~is~~~  185 (311)
T 2z2u_A          112 GVLDRVGEKKFKEALEPKHVAISLSGEPTL----YPYLDELIKIFHKNGFTTFV--VSNGILTDVIEKIEPTQLYISLDA  185 (311)
T ss_dssp             GGHHHHCHHHHHHHTSCCEEEECSSSCGGG----STTHHHHHHHHHHTTCEEEE--EECSCCHHHHHHCCCSEEEEECCC
T ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCC----CCCHHHHHHHHHHHCCHHEE--ECCCCCHHHHHHCCCCEEEEEECC
T ss_conf             666541056677642775799815887410----02799999998630302100--005542367762366168987357


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC--CC
Q ss_conf             0138300027563897035899999999997089167014048876420688999999999669939975022278--61
Q gi|254780676|r  194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP--TR  271 (329)
Q Consensus       194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P--s~  271 (329)
                      ..-|+-.++++  +....|++-++.++.+++..+ +...+-++   -+..+|+.+.++-+.+.|++.+.+.+|..-  ..
T Consensus       186 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-v~i~~~i~---~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 2z2u_A          186 YDLDSYRRICG--GKKEYWESILNTLDILKEKKR-TCIRTTLI---RGYNDDILKFVELYERADVHFIELKSYMHVGYSQ  259 (311)
T ss_dssp             SSTTTC----C--CCHHHHHHHHHHHHHHTTSSS-EEEEEEEC---TTTTCCGGGTHHHHHHHTCSEEEEEECC------
T ss_pred             CCHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCC-EEEEEEEE---CCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf             99999999868--765639999999999986698-59999726---6865289999999874598889996007414663


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCC-CCEE------ECCCCCCCCHHH
Q ss_conf             0078000238469999999999749-6243------404830010318
Q gi|254780676|r  272 KHHKVESFVTPQDFKSYETIAYSKG-FLMV------SASPLTRSSYHA  312 (329)
Q Consensus       272 ~h~pV~ryv~P~eF~~~~~~a~~~G-f~~V------~SgPlVRSSY~A  312 (329)
                      .+....+..+++++.++.+...+.| +..+      ++|.+.|..+.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  307 (311)
T 2z2u_A          260 KRLKKEDMLQHDEILKLAKMLDENSSYKLIDDSEDSRVALLQNENRKI  307 (311)
T ss_dssp             ------CCCCHHHHHHHHHHHHTSSSEEEEEEEGGGTEEEEEETTSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             316300399899999999998754697152477874589985567777


No 10 
>>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* (A:1-311)
Probab=96.40  E-value=0.057  Score=35.04  Aligned_cols=143  Identities=11%  Similarity=-0.008  Sum_probs=110.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             98888235799999999707751898505445345325899999999998533586899815462344689998741070
Q gi|254780676|r  110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP  189 (329)
Q Consensus       110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p  189 (329)
                      ...+..++-..++++..++|..++-+.+...-       ....+.++++-.......+....   .-+...++.+..++.
T Consensus        55 ~~~~~~e~k~~i~~~l~~~Gv~~iE~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  124 (311)
T 3ivs_A           55 NAFFDTEKKIQIAKALDNFGVDYIELTSPVAS-------EQSRQDCEAICKLGLKCKILTHI---RCHXDDARVAVETGV  124 (311)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTCSEEEECCTTSC-------HHHHHHHHHHHTSCCSSEEEEEE---ESCHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHHCCCCCEEEEC---CCCHHHHHHHHHCCC
T ss_conf             99899999999999999809798999778478-------36799999998716831223102---058066999997057


Q ss_pred             HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             2332013830002756389---70358999999999970891670140488764206889999999996699399750
Q gi|254780676|r  190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG  264 (329)
                      .+...=....+.....+|-   ....+.-++.++++|+.|..+.  -++|-...=+.+++.+.++.+.+.|+|+|.|-
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~d~i~l~  200 (311)
T 3ivs_A          125 DGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVR--FSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA  200 (311)
T ss_dssp             SEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEE--EEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCC--CCCCHHCCCCCCHHHHHHHHHCCCCCCCEECC
T ss_conf             74238862315553320111110023300112100112321323--33320013432101332334301342212102


No 11 
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=95.69  E-value=0.11  Score=32.92  Aligned_cols=148  Identities=11%  Similarity=0.015  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999998533586899815462344689998741070233201383000275638970358999999999970891670
Q gi|254780676|r  152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT  231 (329)
Q Consensus       152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T  231 (329)
                      .+.++.+++..-.  +-+.+.-+  ..+.....+.++++.+.=-+.....-...-+...+|++.++.++.+++.+..+..
T Consensus        22 ~~i~~~~~~~g~~--~~l~Tng~--~~~~~~~~~~~~~~~i~isld~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i   97 (182)
T 3can_A           22 IDILKRCGQQGIH--RAVDTTLL--ARKETVDEVXRNCELLLIDLKSXDSTVHQTFCDVPNELILKNIRRVAEADFPYYI   97 (182)
T ss_dssp             HHHHHHHHHTTCC--EEEECTTC--CCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHCCCC--EEEEECCC--HHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             9999999877992--99972521--1077777665200000243220038888878730257888666667663023124


Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH-HCCCCCC----------C--CCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             1404887642068899999999966993997502-2278610----------0--7800023846999999999974962
Q gi|254780676|r  232 KSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ-YLQPTRK----------H--HKVESFVTPQDFKSYETIAYSKGFL  298 (329)
Q Consensus       232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ-YL~Ps~~----------h--~pV~ryv~P~eF~~~~~~a~~~Gf~  298 (329)
                      .+=++-|+..+.+|+.+.++-+.+.|+++..+-+ .+.++..          .  ..-......++...+.+++.+.||.
T Consensus        98 ~~~~~~~~~d~~~ei~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  177 (182)
T 3can_A           98 RIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKXQTPSEEVQQQCIQILTDYGLK  177 (182)
T ss_dssp             EEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CCBCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             43022797599999999999998669984798665565676106877086245445777999999999999999970981


Q ss_pred             EEECC
Q ss_conf             43404
Q gi|254780676|r  299 MVSAS  303 (329)
Q Consensus       299 ~V~Sg  303 (329)
                      ...-|
T Consensus       178 ~~i~g  182 (182)
T 3can_A          178 ATIGG  182 (182)
T ss_dssp             EEECC
T ss_pred             EEECC
T ss_conf             68596


No 12 
>>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112)
Probab=95.42  E-value=0.28  Score=30.20  Aligned_cols=99  Identities=15%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH----HHHHHHHHH
Q ss_conf             72699986652235352234467--899888823579999999970775189850544534532589----999999999
Q gi|254780676|r   85 NHATFMILGAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQ----HFAEVISAI  158 (329)
Q Consensus        85 gtATFMilG~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~----hfa~~I~~I  158 (329)
                      +....+-..--|..+|.||++..  |+....+++.-..=.+...+.|.+++.++..+  ....+.-.    .|++.++++
T Consensus         3 ~~~~~i~tsRGCp~~C~FC~~~~~~g~~r~r~~~~v~~ei~~l~~~g~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~   80 (112)
T 2qgq_A            3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQD--TTSYGIDLYRKQALPDLLRRL   80 (112)
T ss_dssp             CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTT--GGGTTHHHHSSCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCCEECEEEEEECCEEEECHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCCCCCCCCHHHHHHHH
T ss_conf             850998986798997755734212297287099999999999998799689998503--664554233443278887655


Q ss_pred             HHHCCCCEEEE--ECCCCCCCHHHHHHHHH
Q ss_conf             85335868998--15462344689998741
Q gi|254780676|r  159 RESAPSTTIEV--LTPDFLRKPHALEKVVS  186 (329)
Q Consensus       159 r~~~P~~~IEv--LiPDf~G~~~al~~v~~  186 (329)
                      .+.++...+-.  +-||.. +.+.|+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~i-~~ell~~l~~  109 (112)
T 2qgq_A           81 NSLNGEFWIRVXYLHPDHL-TEEIISAXLE  109 (112)
T ss_dssp             HTSSSSCEEEECCCCGGGC-CHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
T ss_conf             3034411012123466333-2110000023


No 13 
>>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} (X:)
Probab=95.31  E-value=0.3  Score=29.95  Aligned_cols=149  Identities=9%  Similarity=-0.018  Sum_probs=108.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             7899888823579999999970775189850544534532589999999999853358689981546234-468999874
Q gi|254780676|r  107 TGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR-KPHALEKVV  185 (329)
Q Consensus       107 ~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G-~~~al~~v~  185 (329)
                      .........++-..++++..++|..++=+.+....       .--.+-++.+....|++.+..+.---.+ +...++.+.
T Consensus        18 Q~~~~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (293)
T 3ewb_X           18 QTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISS-------PGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALK   90 (293)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTCSEEEEECGGGC-------HHHHHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             88999989999999999999839699999668788-------67788999998651213101200035364799999987


Q ss_pred             HCCCHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             10702332013830002756389---703589999999999708916701404887642068899999999966993997
Q gi|254780676|r  186 SAKPDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       186 ~A~pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT  262 (329)
                      .++.+.+.+-+-+.+.....++-   ....+...+.++.+++.+..+.  =++|-...=+.+++.+.++.+.+.|+|+|.
T Consensus        91 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  168 (293)
T 3ewb_X           91 DAVSPQIHIFLATSDVHXEYKLKXSRAEVLASIKHHISYARQKFDVVQ--FSPEDATRSDRAFLIEAVQTAIDAGATVIN  168 (293)
T ss_dssp             TCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETGGGSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             HCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE--EECCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             559977999973079988887516599999999999988750776799--811336676345689999999986997998


Q ss_pred             CC
Q ss_conf             50
Q gi|254780676|r  263 MG  264 (329)
Q Consensus       263 iG  264 (329)
                      |.
T Consensus       169 l~  170 (293)
T 3ewb_X          169 IP  170 (293)
T ss_dssp             EE
T ss_pred             EC
T ss_conf             33


No 14 
>>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A (A:)
Probab=95.21  E-value=0.32  Score=29.74  Aligned_cols=151  Identities=12%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             998-8882357999999997077518985054453453258999999999985335868998154623446899987410
Q gi|254780676|r  109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA  187 (329)
Q Consensus       109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A  187 (329)
                      +|. |+-|+|-..-|.+..+-|-.-+=+--=+.|..+-.-+..|+++|.+||+.+|++.|.+-+..-.+..+....+.+.
T Consensus        26 ~P~lP~TpeEia~~a~~c~~AGAaivHlH~R~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~ttgg~~~~~e~~~~~~~~  105 (284)
T 3chv_A           26 NPAVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGXIVQFSTGGRSGAGQARGGXLPL  105 (284)
T ss_dssp             CTTCCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC
T ss_conf             99998998999999999998188689987328994977788999999999998668207974588777738887420334


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC-------CE
Q ss_conf             70233201383000275638970358999999999970891670140488764206889999999996699-------39
Q gi|254780676|r  188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV-------DF  260 (329)
Q Consensus       188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv-------di  260 (329)
                      +||...=|+-+.--      +...|..+-+.+++.-+    ...+.|+..-++=-+-.-+..+..|.+-|.       .+
T Consensus       106 ~Pd~asl~~gs~n~------~~~~~~n~~~~~~~~~~----~~~e~gi~pe~ei~d~g~l~~~~~l~~~Gll~~p~~~~~  175 (284)
T 3chv_A          106 KPDXASLSVGSNNF------PSRVYENPPDLVDWLAA----QXRSYRVTPEIEAFDLSHILRAIDXHGRGLLYGKLYVQF  175 (284)
T ss_dssp             CCSEEEECCSCEEC------SSSEECCCHHHHHHHHH----HHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEE
T ss_pred             CCCCCCCCCCCCCC------CCHHHHCCHHHHHHHHH----HHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             34555432223454------32334167999999999----999856665058874999999999998288678852799


Q ss_pred             EECCHHCCC
Q ss_conf             975022278
Q gi|254780676|r  261 LTMGQYLQP  269 (329)
Q Consensus       261 lTiGQYL~P  269 (329)
                      +-.+++-.|
T Consensus       176 vlg~~~g~p  184 (284)
T 3chv_A          176 VXGVKNAXP  184 (284)
T ss_dssp             EECCTTSCC
T ss_pred             EECCCCCCC
T ss_conf             954566788


No 15 
>>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:1-273)
Probab=95.10  E-value=0.13  Score=32.57  Aligned_cols=157  Identities=11%  Similarity=0.025  Sum_probs=112.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             9888823579999999970775189850544534----532589999999999853358689981546234468999874
Q gi|254780676|r  110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDL----DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV  185 (329)
Q Consensus       110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL----~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~  185 (329)
                      ....+.++-..++++..++|..++-+++....+.    .+.-+......+...........++.+.+             
T Consensus        24 ~~~~~~~~~~~i~~~L~~~Gv~~iE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------   90 (273)
T 1nvm_A           24 RHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLL-------------   90 (273)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEEC-------------
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC-------------
T ss_conf             9998999999999999982949899688867655200012357876999999998615672454424-------------


Q ss_pred             HCCCHHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             1070233201383000275638---9703589999999999708916701404887642068899999999966993997
Q gi|254780676|r  186 SAKPDVFNHNLETVASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       186 ~A~pdV~nHNiETV~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilT  262 (329)
                       ++.+++.-.+...+.....+|   .....+..++.++++|+.|..+.  -++|-..+-+.+++.+.++.+.+.|+|++.
T Consensus        91 -~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~i~~ak~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  167 (273)
T 1nvm_A           91 -PGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTV--GFLMMSHMIPAEKLAEQGKLMESYGATCIY  167 (273)
T ss_dssp             -BTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEE--EEEESTTSSCHHHHHHHHHHHHHHTCSEEE
T ss_pred             -CCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             -56205889999997299879996114376768899999997274302--344024566523445788888860863110


Q ss_pred             CCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             502227861007800023846999999999
Q gi|254780676|r  263 MGQYLQPTRKHHKVESFVTPQDFKSYETIA  292 (329)
Q Consensus       263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a  292 (329)
                      |.-=          .-..+|+++.++=..-
T Consensus       168 l~Dt----------~G~~~P~~~~~li~~l  187 (273)
T 1nvm_A          168 MADS----------GGAMSMNDIRDRMRAF  187 (273)
T ss_dssp             EECT----------TCCCCHHHHHHHHHHH
T ss_pred             CCCC----------CCCCCHHHHHHHHHHH
T ss_conf             2542----------0246879999999999


No 16 
>>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} (A:)
Probab=94.67  E-value=0.4  Score=29.11  Aligned_cols=147  Identities=7%  Similarity=-0.029  Sum_probs=103.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             98888235799999999707751898505445345325899999999998533586899815462344689998741070
Q gi|254780676|r  110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP  189 (329)
Q Consensus       110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p  189 (329)
                      ......++-.++++...++|..++=+.+...-+..-.    +.+.+.......+...+..+..  .-+...++.+.+++.
T Consensus        20 ~~~~~~~~k~~i~~~L~~~Gv~~iE~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   93 (295)
T 1ydn_A           20 KRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ----LADSREVXAGIRRADGVRYSVL--VPNXKGYEAAAAAHA   93 (295)
T ss_dssp             SSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG----GTTHHHHHHHSCCCSSSEEEEE--CSSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH----HHHHHHHHHHCCCCCCCHHHHH--HHCCCCHHHHCCCCC
T ss_conf             9998999999999999982989899807757754688----8878887742156675228876--531320111013564


Q ss_pred             HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEE------EECHHHHHHHHHHHHHCCCCE
Q ss_conf             2332013830002756389---7035899999999997089167014048876------420688999999999669939
Q gi|254780676|r  190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGL------GETRNEILQLMDDLRTADVDF  260 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL------GEt~eEi~e~l~DLr~~gvdi  260 (329)
                      +.+.--+-+.+..-..+|.   ...-++-++.++++|+.|..+.  -.++-.-      +-+.+.+.+..+.+.+.|+|+
T Consensus        94 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  171 (295)
T 1ydn_A           94 DEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR--GYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHE  171 (295)
T ss_dssp             SEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECSSEETTTEECCHHHHHHHHHHHHHHTCSE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             08875201468999888510576656665477888764023443--1133102564200133446799988777448538


Q ss_pred             EECC
Q ss_conf             9750
Q gi|254780676|r  261 LTMG  264 (329)
Q Consensus       261 lTiG  264 (329)
                      +.|-
T Consensus       172 i~l~  175 (295)
T 1ydn_A          172 VSLG  175 (295)
T ss_dssp             EEEE
T ss_pred             EECC
T ss_conf             9616


No 17 
>>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1} (A:)
Probab=94.22  E-value=0.36  Score=29.45  Aligned_cols=147  Identities=11%  Similarity=0.054  Sum_probs=103.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             98888235799999999707751898505445345325899999999998533586899815462344689998741070
Q gi|254780676|r  110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP  189 (329)
Q Consensus       110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p  189 (329)
                      ...++.++-..++++..++|..++-+++...-+-.-.-  ..+..........+....-.+.+    ...+++....++.
T Consensus        24 ~~~~~~~~k~~i~~~l~~~Gv~~iE~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   97 (302)
T 2ftp_A           24 KQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQM--AGSAEVFAGIRQRPGVTYAALAP----NLKGFEAALESGV   97 (302)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGG--TTHHHHHHHSCCCTTSEEEEECC----SHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH--HHHHHHHHCCCCCHHHHHHHHHH----CCHHHHHHHHCCC
T ss_conf             99889999999999999729999998887586623777--65999996267420567778864----0069999984599


Q ss_pred             HHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECCCEEEEE-----EEC-HHHHHHHHHHHHHCCCCE
Q ss_conf             2332013830002756389---7035899999999997089167014048876-----420-688999999999669939
Q gi|254780676|r  190 DVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIFTKSGIMLGL-----GET-RNEILQLMDDLRTADVDF  260 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL-----GEt-~eEi~e~l~DLr~~gvdi  260 (329)
                      ++.+.-+.+.+.....+|-   ....+.-.+.++++|+.|..+.  ..++...     +.+ .+.+.+.++.+.+.|+|.
T Consensus        98 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~d~  175 (302)
T 2ftp_A           98 KEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR--GYISCVLGCPYDGDVDPRQVAWVARELQQMGCYE  175 (302)
T ss_dssp             CEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSE
T ss_pred             CEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             88999863249999987533699998767899999986201000--1013135566555210999999999998605704


Q ss_pred             EECC
Q ss_conf             9750
Q gi|254780676|r  261 LTMG  264 (329)
Q Consensus       261 lTiG  264 (329)
                      |+|.
T Consensus       176 i~l~  179 (302)
T 2ftp_A          176 VSLG  179 (302)
T ss_dssp             EEEE
T ss_pred             EECC
T ss_conf             3147


No 18 
>>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} (A:)
Probab=93.50  E-value=0.24  Score=30.68  Aligned_cols=154  Identities=8%  Similarity=-0.024  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             234467899888823579999999970775189850544534532589999999-9998533586899815462344689
Q gi|254780676|r  102 FCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVI-SAIRESAPSTTIEVLTPDFLRKPHA  180 (329)
Q Consensus       102 FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I-~~Ir~~~P~~~IEvLiPDf~G~~~a  180 (329)
                      +-+-........+.++-..++++..++|..++-+.+..+-+..-......+... +......+.+..       +-....
T Consensus        14 lRDG~Q~~~~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   86 (307)
T 1ydo_A           14 PRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAAL-------VPNQRG   86 (307)
T ss_dssp             HHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEE-------CCSHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEHH-------HCCCHH
T ss_conf             8863659899989999999999999819898994787584527777889999974774545321001-------102327


Q ss_pred             HHHHHHCCCHHHHHCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCEEEECCCEEEE------EEECHHHHHHHHH
Q ss_conf             99874107023320138300027563897---03589999999999708916701404887------6420688999999
Q gi|254780676|r  181 LEKVVSAKPDVFNHNLETVASNYLMVRPG---ARYFHSLRLLQRVKELDPLIFTKSGIMLG------LGETRNEILQLMD  251 (329)
Q Consensus       181 l~~v~~A~pdV~nHNiETV~rLy~~VRp~---a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG------LGEt~eEi~e~l~  251 (329)
                      +.....++.+.+.=-+.+.+.....++..   ...++-+..++.+++.|..+.  ..+|.-      ---+.+.+.+.++
T Consensus        87 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~G~~v~--~~l~~~~~~~d~~~~~~~~l~~~~~  164 (307)
T 1ydo_A           87 LENALEGGINEACVFXSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTR--AYLSTVFGCPYEKDVPIEQVIRLSE  164 (307)
T ss_dssp             HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred             HHHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE--EEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             99863044435888730126554543105489877667777765403210001--2332204665232210678899999


Q ss_pred             HHHHCCCCEEECC
Q ss_conf             9996699399750
Q gi|254780676|r  252 DLRTADVDFLTMG  264 (329)
Q Consensus       252 DLr~~gvdilTiG  264 (329)
                      .+.+.|+|.+.|-
T Consensus       165 ~~~~~g~~~i~l~  177 (307)
T 1ydo_A          165 ALFEFGISELSLG  177 (307)
T ss_dssp             HHHHHTCSCEEEE
T ss_pred             HHHHCCCEEEECC
T ss_conf             9986398078514


No 19 
>>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=92.96  E-value=0.89  Score=26.64  Aligned_cols=159  Identities=10%  Similarity=0.002  Sum_probs=116.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCC
Q ss_conf             8888235799999999707751898505445345325899999999998533586899815462344-689998741070
Q gi|254780676|r  111 QPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-PHALEKVVSAKP  189 (329)
Q Consensus       111 ~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-~~al~~v~~A~p  189 (329)
                      .....++-.++|+...++|..++=+.+..-      + .--.+-++.+....++..+..+.-.-.+. ...++.+..++.
T Consensus        23 ~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~   95 (325)
T 3eeg_A           23 CQLNTEEKIIVAKALDELGVDVIEAGFPVS------S-PGDFNSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKR   95 (325)
T ss_dssp             --CCTTHHHHHHHHHHHHTCSEEEEECTTS------C-HHHHHHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCC------C-HHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             999999999999999976969999977979------9-799999999874124430310211220025656999985588


Q ss_pred             HHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf             233201383000275638---97035899999999997089167014048876420688999999999669939975022
Q gi|254780676|r  190 DVFNHNLETVASNYLMVR---PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY  266 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VR---p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY  266 (329)
                      +.++..+.+.+.+-..++   ....-+..+++++++|+.|..+.  -++|-.--=+.+++.+.++.+.+.|+|+|.|---
T Consensus        96 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt  173 (325)
T 3eeg_A           96 SRIHTGIGSSDIHIEHKLRSTRENILEXAVAAVKQAKKVVHEVE--FFCEDAGRADQAFLARXVEAVIEAGADVVNIPDT  173 (325)
T ss_dssp             EEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE--EEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE--ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             57998514549999988766688899999999998876053244--2356544306999999999999849989995155


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2786100780002384699999
Q gi|254780676|r  267 LQPTRKHHKVESFVTPQDFKSY  288 (329)
Q Consensus       267 L~Ps~~h~pV~ryv~P~eF~~~  288 (329)
                                .-+-+|+++.++
T Consensus       174 ----------~G~~~P~~~~~l  185 (325)
T 3eeg_A          174 ----------TGYXLPWQYGER  185 (325)
T ss_dssp             ----------SSCCCHHHHHHH
T ss_pred             ----------CCCEECHHHHHH
T ss_conf             ----------665531167889


No 20 
>>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* (A:)
Probab=92.48  E-value=1  Score=26.21  Aligned_cols=150  Identities=11%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             CCCCCHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             98888235799999-99970775189850544534532589999999999853358689981546234468999874107
Q gi|254780676|r  110 PQPLDPQEPENISW-AVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK  188 (329)
Q Consensus       110 P~~~D~~EP~rvA~-av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~  188 (329)
                      ....+.++-.+++. ++..+|..++-+.+....   ..-..-+......++............  ...+...++.+..++
T Consensus        35 ~~~~~~~~ki~~~~~~l~~~Gv~~iE~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  109 (337)
T 3ble_A           35 GVSFSTSEKLNIAKFLLQKLNVDRVEIASARVS---KGELETVQKIMEWAATEQLTERIEILG--FVDGNKTVDWIKDSG  109 (337)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSC---TTHHHHHHHHHHHHHHTTCGGGEEEEE--ESSTTHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC---HHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHHHHHHCC
T ss_conf             999899999999999999769898996897668---778888899999853111011033555--654338899998659


Q ss_pred             CHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEE-ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             02332013830002756389---7035899999999997089167-0140488764206889999999996699399750
Q gi|254780676|r  189 PDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIF-TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       189 pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~-TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG  264 (329)
                      .++++--+.+.+.....+|-   ....+..++.++.+|+.|..+. +-++++=.-..+.+.+.+..+-+.++|+|.+.|-
T Consensus       110 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~  189 (337)
T 3ble_A          110 AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLP  189 (337)
T ss_dssp             CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             CCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             98452034532233112101208889888889999997549759986313444433453024566677876312332036


No 21 
>>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid biosynthesis, cytoplasm, lysine biosynthesis; HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A* (A:1-277)
Probab=92.37  E-value=1.1  Score=26.12  Aligned_cols=154  Identities=8%  Similarity=-0.007  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             35223446789988882357999999997077518985054453453258999999999985335868998154623446
Q gi|254780676|r   99 ACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP  178 (329)
Q Consensus        99 ~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~  178 (329)
                      .|.+-+-..........++-.++++...++|+.++=+++....       ......++...+......+-   .-++.+.
T Consensus         8 D~TlRDG~Q~~~~~~~~~~~~~i~~~l~~~Gv~~iE~g~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~   77 (277)
T 2ztj_A            8 DSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVAS-------PQSRKDAEVLASLGLKAKVV---THIQCRL   77 (277)
T ss_dssp             EEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTSC-------HHHHHHHHHHHTSCCSSEEE---EEEESCH
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------HHHHHHHHHHHHCCCCCCCE---EEHEECC
T ss_conf             7997875789998989999999999999829898999787478-------77899999998628863220---1000265


Q ss_pred             HHHHHHHHCCCHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHH
Q ss_conf             899987410702332013830002756389--70358999999999970891670140488764-206889999999996
Q gi|254780676|r  179 HALEKVVSAKPDVFNHNLETVASNYLMVRP--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRT  255 (329)
Q Consensus       179 ~al~~v~~A~pdV~nHNiETV~rLy~~VRp--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~  255 (329)
                      ..++.+..++.+.+..-+-+....-...+-  ....+...+.++++|+.|..+.  -.++-.-+ .+++.+.+.+..+.+
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~v~~a~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
T 2ztj_A           78 DAAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVE--VRFSAEDTFRSEEQDLLAVYEAVA  155 (277)
T ss_dssp             HHHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSE--EEEEETTTTTSCHHHHHHHHHHHG
T ss_pred             CHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCCCCCCCHHHHHHCC
T ss_conf             145667752750589971364898887664699999999999999997277505--775012244454211013321012


Q ss_pred             CCCCEEECC
Q ss_conf             699399750
Q gi|254780676|r  256 ADVDFLTMG  264 (329)
Q Consensus       256 ~gvdilTiG  264 (329)
                      .|+|++.|.
T Consensus       156 ~g~~~i~l~  164 (277)
T 2ztj_A          156 PYVDRVGLA  164 (277)
T ss_dssp             GGCSEEEEE
T ss_pred             CCCEEEEEC
T ss_conf             431146751


No 22 
>>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472)
Probab=91.48  E-value=0.45  Score=28.71  Aligned_cols=143  Identities=10%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             3579999999970775189850544534--53258999999999985335868998154623446899987410702332
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITSVDRDDL--DDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFN  193 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL--~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~n  193 (329)
                      ++-..++++..++|..++-+.+...-|.  ..-+.. -.+-++.++...|++.+..|.-+     ..+.......-++..
T Consensus        47 e~~~~i~~~Ld~~G~~~iEvg~~a~~~~~~~~~~~~-~~e~l~~~~~~~~~t~~~~l~r~-----~~~~~~~~~~~~vv~  120 (359)
T 1rqb_A           47 EDXVGACADIDAAGYWSVECWGGATYDSCIRFLNED-PWERLRTFRKLXPNSRLQXLLRG-----QNLLGYRHYNDEVVD  120 (359)
T ss_dssp             GGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCC-HHHHHHHHHHHCTTSCEEEEECG-----GGTTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCC-HHHHHHHHHHHCCCCCCHHHHCH-----HHCCCCCCCCHHHHH
T ss_conf             999999999998299989888884768899862788-79999999985899824363221-----220100258778999


Q ss_pred             HCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             013830----00275638970358999999999970891670140488764206889999999996699399750
Q gi|254780676|r  194 HNLETV----ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       194 HNiETV----~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG  264 (329)
                      .-+++.    -+.++........+.....++.+|+.|..+..-=+.+-+-.-+.+.+++.++.+.+.|+|+|.|.
T Consensus       121 ~f~~~s~~~~~~~~ri~~~~n~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G~d~I~i~  195 (359)
T 1rqb_A          121 RFVDKSAENGXDVFRVFDAXNDPRNXAHAXAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDXGADSIALX  195 (359)
T ss_dssp             HHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999985138873476788999988889999956987999996167878799999999767773697679871


No 23 
>>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} (A:1-267)
Probab=88.59  E-value=0.64  Score=27.65  Aligned_cols=141  Identities=6%  Similarity=-0.057  Sum_probs=91.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHH--HHHCC---CCEEEEECCCCCCCHHHHHHH
Q ss_conf             9888823579999999970775189850544534532589999999999--85335---868998154623446899987
Q gi|254780676|r  110 PQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAI--RESAP---STTIEVLTPDFLRKPHALEKV  184 (329)
Q Consensus       110 P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~I--r~~~P---~~~IEvLiPDf~G~~~al~~v  184 (329)
                      ......++-.+++++..++|..++-+++....+-..............-  .....   ...++.+.|   .....+...
T Consensus        18 ~~~~~~e~k~~i~~~l~~~Gv~~iE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   94 (267)
T 3dxi_A           18 NWDFNSKIVDAYILAXNELPIDYLEVGYRNKPSKEYXGKFGYTPVSVLKHLRNISTKKIAIXLNEKNT---TPEDLNHLL   94 (267)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGC---CGGGHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf             99999999999999999819598998088897566777760782899999886545456665413445---589999887


Q ss_pred             HHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             41070233201383000275638970358999999999970891670140488764206889999999996699399750
Q gi|254780676|r  185 VSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       185 ~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG  264 (329)
                      ....+-+.-+         +.-......++-++.++++++.|..+.  -+++-.-.=+.+++.+.++.+.+.|+|++.|.
T Consensus        95 ~~~s~~~~~~---------r~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~~~~~~~~~~~~~~~~~~g~d~I~l~  163 (267)
T 3dxi_A           95 LPIIGLVDXI---------RIAIDPQNIDRAIVLAKAIKTXGFEVG--FNVXYXSKWAEXNGFLSKLKAIDKIADLFCXV  163 (267)
T ss_dssp             GGGTTTCSEE---------EEEECGGGHHHHHHHHHHHHTTTCEEE--EEECCTTTGGGSTTSGGGGGGGTTTCSEEEEE
T ss_pred             HCCCCCEEEE---------EECCCHHHHHHHHHHHHHHHHCCCEEE--EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             6158864356---------530518899999999999997398587--75410233211677889999998189999944


No 24 
>>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:1-370)
Probab=87.36  E-value=1.4  Score=25.32  Aligned_cols=162  Identities=9%  Similarity=-0.069  Sum_probs=107.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             35223446789988882357999999997077518985054453453258999999999985335868998154623446
Q gi|254780676|r   99 ACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP  178 (329)
Q Consensus        99 ~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~  178 (329)
                      .|.|-+-..........++-.++|++..++|..++=+.+-..-    .....+.+.+.+.+...|++.+-.|+.-.....
T Consensus        76 DtTlRDG~Q~~~~~~~~~~k~~i~~~L~~~G~~~iEvg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (370)
T 1sr9_A           76 AVDLRDGNQALIDPXSPARKRRXFDLLVRXGYKEIEVGFPSAS----QTDFDFVREIIEQGAIPDDVTIQVLTQCRPELI  151 (370)
T ss_dssp             ECTTTHHHHTCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTC----HHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----HHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf             6999874779899989999999999999869999996177679----589999999997077877847999970575768


Q ss_pred             -HHHHHHHHCCCHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCEEE----ECCCEEEEEEE-------CH
Q ss_conf             -899987410702332013830002756389---7035899999999997089167----01404887642-------06
Q gi|254780676|r  179 -HALEKVVSAKPDVFNHNLETVASNYLMVRP---GARYFHSLRLLQRVKELDPLIF----TKSGIMLGLGE-------TR  243 (329)
Q Consensus       179 -~al~~v~~A~pdV~nHNiETV~rLy~~VRp---~a~Y~rSL~vL~~aK~~~~~i~----TKSGlMvGLGE-------t~  243 (329)
                       ..++.+..++.+++..=+.+.+..-..+..   .-+..+-+++...+++.+..+.    ..++-+.--..       +.
T Consensus       152 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~  231 (370)
T 1sr9_A          152 ERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQV  231 (370)
T ss_dssp             HHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH
T ss_conf             99999966899867999978369988887249999999999999999999999737844789877401676778999999


Q ss_pred             HHHHHHHHHHHHCCCCEEECC
Q ss_conf             889999999996699399750
Q gi|254780676|r  244 NEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       244 eEi~e~l~DLr~~gvdilTiG  264 (329)
                      +++++....+.+.|+|+|.|.
T Consensus       232 ~~~~~~a~~~~~~g~~~i~i~  252 (370)
T 1sr9_A          232 CDAVGEVIAPTPERPIIFNLP  252 (370)
T ss_dssp             HHHHHHHHCCBTTBCEEEEEE
T ss_pred             HHHHHHHCCCCCCCCEEEECC
T ss_conf             999999563322694699815


No 25 
>>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464)
Probab=84.32  E-value=3.6  Score=22.34  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHH-------HH
Q ss_conf             88235799999999707751-898505445345325899999999998533586899815462344--689-------99
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSH-VVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK--PHA-------LE  182 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~-vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~--~~a-------l~  182 (329)
                      -|...-+...+.++..|..- +.|...+.   +..--..|++.++++.+..++.   +-++|.-|-  ...       |+
T Consensus       124 ~~~~~~~~~i~~ak~~G~~~~~~i~~~~s---~~~~~~~~~~~~~~l~~~gad~---I~i~Dt~G~~~P~~~~~lv~~lk  197 (353)
T 2nx9_A          124 NDVRNMQQALQAVKKMGAHAQGTLCYTTS---PVHNLQTWVDVAQQLAELGVDS---IALKDMAGILTPYAAEELVSTLK  197 (353)
T ss_dssp             CCTHHHHHHHHHHHHTTCEEEEEEECCCC---TTCCHHHHHHHHHHHHHTTCSE---EEEEETTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCHHHHHHHHHHHHCCCCCE---EEECCCCCCCCHHHHHHHHHHHH
T ss_conf             78999999999999817710233321568---8878999999999874269857---88426766562799999999998


Q ss_pred             HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCEEEECCCEEEEEEE-----CHHHHHHHHHHH-HH
Q ss_conf             8741070233201383000275638970358999-9999999708916701404887642-----068899999999-96
Q gi|254780676|r  183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSL-RLLQRVKELDPLIFTKSGIMLGLGE-----TRNEILQLMDDL-RT  255 (329)
Q Consensus       183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL-~vL~~aK~~~~~i~TKSGlMvGLGE-----t~eEi~e~l~DL-r~  255 (329)
                      .-.+...++-.||               ++.-.+ +.|. |=++|-++.  .+=+.||||     .-|.++..|..+ .+
T Consensus       198 ~~~~i~i~~H~Hn---------------t~Gla~an~l~-Ai~aGad~I--Dtsi~glG~~tGn~~tE~lv~~L~~~g~~  259 (353)
T 2nx9_A          198 KQVDVELHLHCHS---------------TAGLADMTLLK-AIEAGVDRV--DTAISSMSGTYGHPATESLVATLQGTGYD  259 (353)
T ss_dssp             HHCCSCEEEEECC---------------TTSCHHHHHHH-HHHTTCSEE--EEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred             HHCCCEEEEEECC---------------HHHHHHHHHHH-HHHCCCCEE--ECCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             6357617898477---------------17789999999-998399899--83787889983168799999998614989


Q ss_pred             CCCC---EEECCHHCCCCCCC-CCC--------CCCCCHHHHHHHH----HHHHHCCCCE
Q ss_conf             6993---99750222786100-780--------0023846999999----9999749624
Q gi|254780676|r  256 ADVD---FLTMGQYLQPTRKH-HKV--------ESFVTPQDFKSYE----TIAYSKGFLM  299 (329)
Q Consensus       256 ~gvd---ilTiGQYL~Ps~~h-~pV--------~ryv~P~eF~~~~----~~a~~~Gf~~  299 (329)
                      .|+|   +..|..|+++-... .+-        .--..| ||+..+    .+|.+.|+..
T Consensus       260 t~idl~~L~~i~~~~~~i~~~~~~~~~~i~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  318 (353)
T 2nx9_A          260 TGLDIAKLEQIAAYFRDVRKKYHAFEGMMKGSPADLIAA-EMPTLQDRVLQQAKEQHITL  318 (353)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTGGGCCSCCSCGGGSSCC-CHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC-CHHHHHHHHHHHHHHCCCCC
T ss_conf             998989999999999999998526675556780342573-15899999999998515676


No 26 
>>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:66-396,A:510-576)
Probab=81.93  E-value=4.1  Score=21.98  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=8.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             0688999999999669939975
Q gi|254780676|r  242 TRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       242 t~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +.+.+.+..+.|.+.|+|+|.|
T Consensus       194 ~~~~~~~~a~~l~~~Gad~I~i  215 (398)
T 3bg3_A          194 SLQYYMGLAEELVRAGTHILCI  215 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8999999999998639978986


No 27 
>>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} (A:248-421)
Probab=81.18  E-value=1.5  Score=25.13  Aligned_cols=123  Identities=14%  Similarity=0.107  Sum_probs=76.6

Q ss_pred             CCCCHHHHHCCCCEEEEEECC-CCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHC-CCEEEEEC--CCCCCCCCCHH
Q ss_conf             887876750897269998665-223535223446789988-88235799999999707-75189850--54453453258
Q gi|254780676|r   74 GCPNIGECWNKNHATFMILGA-ICTRACTFCNVATGKPQP-LDPQEPENISWAVRSMK-LSHVVITS--VDRDDLDDGGA  148 (329)
Q Consensus        74 ~CPNi~ECw~~gtATFMilG~-~CTR~C~FC~V~~G~P~~-~D~~EP~rvA~av~~l~-Lk~vViTS--V~RDDL~DgGA  148 (329)
                      .-+-.+.-|....-||+=||| ..|         .|||.| +||.-  |+..-.+... =.-.||--  |--=--..-=|
T Consensus        32 ~~~~~g~~l~s~gH~iiDlGDD~fT---------~GrPHPMIDPs~--R~e~l~~~a~Dp~~~VILlD~VLGyGah~Dpa  100 (174)
T 3dmy_A           32 DTHQHGXXLDADSHQIIDLGDDFYT---------VGRPHPXIDPTL--RNQLIADLGAKPQVRVLLLDVVIGFGATADPA  100 (174)
T ss_dssp             -CCGGGEEEEETTEEEEETTSHHHH---------TTSCCTTTCCHH--HHHHHHHGGGCTTEEEEEEEEECSTTSCSCHH
T ss_pred             CCHHHHHHHHCCCCHHHHCCCCHHC---------CCCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHH
T ss_conf             7476898652334214322895001---------569756569899--99999999529898879997412675666727


Q ss_pred             HHHHHHHHHHHHHCCC----CEEEE---ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             9999999999853358----68998---15462344689998741070233201383000275638
Q gi|254780676|r  149 QHFAEVISAIRESAPS----TTIEV---LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVR  207 (329)
Q Consensus       149 ~hfa~~I~~Ir~~~P~----~~IEv---LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VR  207 (329)
                      .-.+..|+++++..++    ..|-.   ---|-++..++.+++.+||.-|+.-|-+.|+--..-|+
T Consensus       101 g~l~paI~~a~~a~~~gr~l~vva~V~GT~~DPQ~~~~Q~~~L~~AGv~v~~Sn~qA~~~A~~li~  166 (174)
T 3dmy_A          101 ASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIH  166 (174)
T ss_dssp             HHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEECSSHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
T ss_conf             777999999999753479946999965777775248999999995898236998999999999860


No 28 
>>3fdg_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, MCSG, PSI-2, protein structure initiative; 1.80A {Rhodobacter sphaeroides 2} (A:)
Probab=80.92  E-value=4.8  Score=21.46  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=93.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCC--------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             999999970775189850544534532--------------589999999999853358689981546234468999874
Q gi|254780676|r  120 NISWAVRSMKLSHVVITSVDRDDLDDG--------------GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV  185 (329)
Q Consensus       120 rvA~av~~l~Lk~vViTSV~RDDL~Dg--------------GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~  185 (329)
                      ..-+.+..+|++++.+|--.+-.+.|+              -..+..+.|+++-++  ++.|.+-=.   ++....+.+-
T Consensus       147 ~~l~~~~~~GvR~i~lt~~~~n~~~~~~~~~~~~~~~~~~GLt~~G~~~v~~mn~l--GiivD~sH~---s~~~~~d~l~  221 (355)
T 3fdg_A          147 DALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAGRRLVAECNRL--KIMLDLSHL---NEKGFDDVAR  221 (355)
T ss_dssp             HHHHHHHHHTEEEEESCSSSCCSSCCBCCCEESCCSCCSCCCCHHHHHHHHHHHHH--TCEECCTTB---CHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCEEECCCC---CHHHHHHHHH
T ss_conf             88999997095799743676777666787456775425899898899999999863--917753768---5889999987


Q ss_pred             -HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE---------------EECHHHHHHH
Q ss_conf             -107023320138300027563897035899999999997089167014048876---------------4206889999
Q gi|254780676|r  186 -SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL---------------GETRNEILQL  249 (329)
Q Consensus       186 -~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL---------------GEt~eEi~e~  249 (329)
                       ...|-+.+|.-  ++.+.+.-|--.  +   +.|+.+.+        +|.++|+               ..|.+.+.+.
T Consensus       222 ~s~~Pvi~SHs~--~~~~~~~~Rnl~--D---~~lr~ia~--------~GGvigi~~~~~~l~~~~~~~~~~~~~~~~~h  286 (355)
T 3fdg_A          222 LSDAPLVATHSN--AHAVTPSTRNLT--D---RQLAMIRE--------SRGMVGLNFATSFLREDGRRSAEMGWEPVLRH  286 (355)
T ss_dssp             HCSSCCEESSCC--BTTTSCCTTSBC--H---HHHHHHHH--------TTCEEEECCCHHHHSTTCCCCCCCCSHHHHHH
T ss_pred             HCCCCEEEECCC--HHHCCCCCCCCC--H---HHHHHHHH--------CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             268998995578--464088877799--9---99999998--------59979984350303787767656899999999


Q ss_pred             HHHHHH-CCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             999996-6993997502227861007800023846999999999974962
Q gi|254780676|r  250 MDDLRT-ADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL  298 (329)
Q Consensus       250 l~DLr~-~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~  298 (329)
                      +..+.+ +|+|.|-||-=.--..   -+.-.-.|..|..+.+.-.+.||.
T Consensus       287 i~~i~~l~G~dhV~~GSDfdg~~---~~~gl~d~~~~~~l~~~L~~rG~s  333 (355)
T 3fdg_A          287 LDHLIDRLGEDHVGMGSDFDGAT---IPQGIADVTGLPALQAAMRAHGYD  333 (355)
T ss_dssp             HHHHHHHHCTTSEEECCCBTTSC---CCTTTCSGGGHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999972988189821689998---978777877899999999986999


No 29 
>>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} (A:159-277)
Probab=79.86  E-value=5.2  Score=21.23  Aligned_cols=66  Identities=11%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             EECHHHHHHHHHHHHHCCCCEEEC---CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             420688999999999669939975---02227861007800023846999999999974962434048300
Q gi|254780676|r  240 GETRNEILQLMDDLRTADVDFLTM---GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTR  307 (329)
Q Consensus       240 GEt~eEi~e~l~DLr~~gvdilTi---GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVR  307 (329)
                      -.+.+|+.+.++++.+.|+|.+-|   |-|+.++..  +-..+++|++|...-+.|.+.|++.+.-..-.+
T Consensus        14 v~~~~e~~~~v~~~~~~g~d~IKi~~~g~~~~~~~~--~~~~~~~~e~l~a~v~~Ah~~G~~v~~Ha~~~~   82 (119)
T 2qs8_A           14 VNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKS--GQNPQFTQEEVDAVVSAAKDYGXWVAVHAHGAE   82 (119)
T ss_dssp             ECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSC--SSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             167899998888765314320000002322223334--443010156779999999983996211246606


No 30 
>>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} (A:)
Probab=78.01  E-value=5.9  Score=20.85  Aligned_cols=147  Identities=10%  Similarity=-0.018  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCC----------CCCC----------------CCCH---HHHHHHHHHHHHHHCC
Q ss_conf             882357999999997077518985054----------4534----------------5325---8999999999985335
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVD----------RDDL----------------DDGG---AQHFAEVISAIRESAP  163 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~----------RDDL----------------~DgG---A~hfa~~I~~Ir~~~P  163 (329)
                      ...++-.++-+.....+++...+---|          -..|                +++|   .+.+.+.|+.-+++.=
T Consensus        30 ~s~~~l~~~i~~ma~~K~N~l~lhl~D~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~yT~~ei~~l~~ya~~~gI  109 (367)
T 1yht_A           30 YSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGI  109 (367)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             68999999999999829978999877478853022787625553025778776787678886489999999999998699


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHCCCEEEECC-CEEE
Q ss_conf             8689981546234468999874107023320138300027---56--3897035899999999997089167014-0488
Q gi|254780676|r  164 STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNY---LM--VRPGARYFHSLRLLQRVKELDPLIFTKS-GIML  237 (329)
Q Consensus       164 ~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy---~~--VRp~a~Y~rSL~vL~~aK~~~~~i~TKS-GlMv  237 (329)
                      ++.-|+=+|   |...+   ++.+.|+....+.+......   ..  +.....|+---++++.+.+.-+.   +| -+=+
T Consensus       110 ~vIPeid~P---gH~~~---~~~~~p~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~l~~e~~~~f~~---~~~~~hi  180 (367)
T 1yht_A          110 ELIPELDSP---NHMTA---IFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGD---TSQHFHI  180 (367)
T ss_dssp             EEEEEEEES---SSCHH---HHHHHHHHHCHHHHHHHBCSSCTTSBCTTCHHHHHHHHHHHHHHHHHHGG---GCSEEEE
T ss_pred             EEEECCCCC---HHHHH---HHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---CCCEEEE
T ss_conf             897556621---58999---99846154078766467788878752588823788999999999986378---5434775


Q ss_pred             EEEECH------HH----HHHHHHHHHHCCCCEEECCHHCC
Q ss_conf             764206------88----99999999966993997502227
Q gi|254780676|r  238 GLGETR------NE----ILQLMDDLRTADVDFLTMGQYLQ  268 (329)
Q Consensus       238 GLGEt~------eE----i~e~l~DLr~~gvdilTiGQYL~  268 (329)
                      |.=|..      +.    +.++.+-+++.|...+--+.-+-
T Consensus       181 G~DE~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~W~d~~~  221 (367)
T 1yht_A          181 GGDEFGYSVESNHEFITYANKLSYFLEKKGLKTRMWNDGLI  221 (367)
T ss_dssp             ECCSCCTTSCCHHHHHHHHHHHHHHHHHTTCEEEEESTTCB
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHC
T ss_conf             03200244343178899999999999977998999713414


No 31 
>>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} (A:)
Probab=77.96  E-value=5.9  Score=20.84  Aligned_cols=141  Identities=14%  Similarity=0.116  Sum_probs=91.1

Q ss_pred             CC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECC---------------
Q ss_conf             98-8882357999999997077518985054453-453258999999999985335868998154---------------
Q gi|254780676|r  110 PQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD-LDDGGAQHFAEVISAIRESAPSTTIEVLTP---------------  172 (329)
Q Consensus       110 P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD-L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiP---------------  172 (329)
                      |. |+.++|-..-|.+..+-|-.-+=|--=|-|| -+..-+..|+++|.+||+.+|++.|-+-+.               
T Consensus        41 P~lP~TpeEIa~~A~~c~~AGAaivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~pd~ii~~TTg~~g~~~~~~~~~~~~  120 (316)
T 3c6c_A           41 PSXPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKA  120 (316)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHC
T ss_conf             99989989999999999981873899875588889967899999999999998738807984687565667770111102


Q ss_pred             ----CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHH
Q ss_conf             ----6234468999874107023320138300027563--8970358999999999970891670140488764206889
Q gi|254780676|r  173 ----DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMV--RPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEI  246 (329)
Q Consensus       173 ----Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~V--Rp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi  246 (329)
                          +.....+.+..+-...||+-.=|+-+.--....-  --..++..--.+++..++.|        +..-+.--+..-
T Consensus       121 ~~~~~~~~~~~r~~~~~~~~Pd~asl~~g~~n~~~~~~~~v~~n~~~~~~~~~~~~~e~g--------i~pe~evfd~g~  192 (316)
T 3c6c_A          121 LPESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVYLNTTRTLRAXARRFQELG--------IKPELEVFSPGD  192 (316)
T ss_dssp             CTTCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEECCCHHHHHHHHHHHHHHT--------CEEEEEESSHHH
T ss_pred             CCCCCCCCHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCC--------CEEEEEEECHHH
T ss_conf             477677889998615120586600246665542235544034288788789999999739--------846999966499


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999996699
Q gi|254780676|r  247 LQLMDDLRTADV  258 (329)
Q Consensus       247 ~e~l~DLr~~gv  258 (329)
                      +..+..|.+.|+
T Consensus       193 l~~~~~l~~~Gl  204 (316)
T 3c6c_A          193 ILFGKQLIEEGL  204 (316)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999986588


No 32 
>>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* (B:)
Probab=77.48  E-value=2.8  Score=23.09  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=16.4

Q ss_pred             EECHHHHHHHHHHHHHCCCCEEEC--CHHCCCCCCC
Q ss_conf             420688999999999669939975--0222786100
Q gi|254780676|r  240 GETRNEILQLMDDLRTADVDFLTM--GQYLQPTRKH  273 (329)
Q Consensus       240 GEt~eEi~e~l~DLr~~gvdilTi--GQYL~Ps~~h  273 (329)
                      |.+.+|-++.++.|.+.|+|++.+  |.|-.+...+
T Consensus       262 G~~~ee~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~  297 (402)
T 2hsa_B          262 GLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTE  297 (402)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSS
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC
T ss_conf             888999987888740366541885256555556655


No 33 
>>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} (D:)
Probab=76.61  E-value=0.56  Score=28.07  Aligned_cols=186  Identities=8%  Similarity=0.037  Sum_probs=105.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf             88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV  191 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV  191 (329)
                      +-+..-|...++.++..|...++++....   ...+-..+...++++...   ..+.+...+.-...+..+.+.+++.|.
T Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~g~d~   99 (253)
T 1thf_D           26 LRDSGDPVELGKFYSEIGIDELVFLDITA---SVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADK   99 (253)
T ss_dssp             SSCTTCHHHHHHHHHHTTCCEEEEEESSC---SSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             EEECCCHHHHHHHHHHCCCCEEEEEEECC---CCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHCCCCE
T ss_conf             37898999999999986998899986314---324532079999999851---574225751311313467888638989


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCC
Q ss_conf             3201383000275638970358999999999970-891670140488764206889999999996699399750222786
Q gi|254780676|r  192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPT  270 (329)
Q Consensus       192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps  270 (329)
                      ++=|+.+...---..--.+.......++...+.. ...+.  --+..|..+..+........+.+.+++.++.+.-.+..
T Consensus       100 i~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (253)
T 1thf_D          100 VSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFM--VFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG  177 (253)
T ss_dssp             EEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE--EEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT
T ss_pred             EEECHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCCCEE--EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             9987688629598999999819810798777530378146--65430135432238899999975559879999753357


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf             10078000238469999999999749624340483001031899
Q gi|254780676|r  271 RKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD  314 (329)
Q Consensus       271 ~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e  314 (329)
                              +..+...+.++.++.......+++|= |||.-.+.+
T Consensus       178 --------~~~~~~~~~i~~ia~~~~~pvi~~GG-I~s~~di~~  212 (253)
T 1thf_D          178 --------TKSGYDTEMIRFVRPLTTLPIIASGG-AGKMEHFLE  212 (253)
T ss_dssp             --------SCSCCCHHHHHHHGGGCCSCEEEESC-CCSHHHHHH
T ss_pred             --------CCCCCCCCCCCCCCCCCCCCEEEECC-CCCHHHHHH
T ss_conf             --------66775411110102454671898448-899999999


No 34 
>>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} (A:165-339)
Probab=75.95  E-value=6.6  Score=20.47  Aligned_cols=81  Identities=10%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEC--CCCCC-------CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             23579999999970775189850--54453-------4532589999999999853358689981546234468999874
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITS--VDRDD-------LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV  185 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTS--V~RDD-------L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~  185 (329)
                      ++|-.+.-....+.|..++-|.+  ..+..       .+-.....+...|++.++..-.+.+-+-.      ..+++..+
T Consensus        20 ~~e~~~~v~~~~~~g~d~IKi~~dG~~~~~~~~~~~g~~~~s~e~l~~~v~~A~~~G~~v~~Ha~g------~~a~~~al   93 (175)
T 2p9b_A           20 PEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQXSVEQXRAICDEAHQYGVIVGAHAQS------PEGVRRSL   93 (175)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECS------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC------HHHHHHHH
T ss_conf             256666666665432211001013554322233332111111899998887654124302210244------15569999


Q ss_pred             HCCCHHHHHCCCCCCC
Q ss_conf             1070233201383000
Q gi|254780676|r  186 SAKPDVFNHNLETVAS  201 (329)
Q Consensus       186 ~A~pdV~nHNiETV~r  201 (329)
                      +++.+.+-|+----+.
T Consensus        94 ~ag~~~IeH~~~~~~~  109 (175)
T 2p9b_A           94 LAGVDTIEHGSVLDDE  109 (175)
T ss_dssp             HHTCSEEEECCCCCHH
T ss_pred             HHCCCEEECCCCCCHH
T ss_conf             8265534113332203


No 35 
>>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221)
Probab=74.51  E-value=7.2  Score=20.22  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=56.5

Q ss_pred             CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEE-ECHHHHHHHHHHH
Q ss_conf             44689998741070233201383000275638970358999999999970-891670140488764-2068899999999
Q gi|254780676|r  176 RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLG-ETRNEILQLMDDL  253 (329)
Q Consensus       176 G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLG-Et~eEi~e~l~DL  253 (329)
                      +-...++.++++|.+-+-=+--|-|-.+      -+-+...++++.+.+. +.++    -+++|.| .+-+|.++..++.
T Consensus        38 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~------Ls~~Er~~l~~~~~~~~~~~~----~ii~gv~~~~t~~~i~~a~~a  107 (221)
T 3cpr_A           38 AGREVAAYLVDKGLDSLVLAGTTGESPT------TTAAEKLELLKAVREEVGDRA----KLIAGVGTNNTRTSVELAEAA  107 (221)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSTTTTTTT------SCHHHHHHHHHHHHHHHTTTS----EEEEECCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECEECHHHHH------CCHHHHHHHHHHHHHHHCCCC----CEEECCCCCHHHHHHHHHHHH
T ss_conf             9999999999779998997844200324------899999999999999836887----677426752199999999999


Q ss_pred             HHCCCCEEECCH--HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             966993997502--22786100780002384699999999997496
Q gi|254780676|r  254 RTADVDFLTMGQ--YLQPTRKHHKVESFVTPQDFKSYETIAYSKGF  297 (329)
Q Consensus       254 r~~gvdilTiGQ--YL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf  297 (329)
                      .++|+|-+-+..  |.++|..          +-++.|++++...+.
T Consensus       108 ~~~Gad~vll~~P~~~~~~~~----------~~~~~~~~v~~~~~~  143 (221)
T 3cpr_A          108 ASAGADGLLVVTPYYSKPSQE----------GLLAHFGAIAAATEV  143 (221)
T ss_dssp             HHTTCSEEEEECCCSSCCCHH----------HHHHHHHHHHHHCCS
T ss_pred             HHCCCCEEEECCCCCCCCCHH----------HHHHHHHHHHHHCCC
T ss_conf             974989999778757898999----------999999999866389


No 36 
>>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} (A:)
Probab=73.58  E-value=7.6  Score=20.07  Aligned_cols=35  Identities=9%  Similarity=0.105  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             899999999749823652578878767508972699986652235352234
Q gi|254780676|r   54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCN  104 (329)
Q Consensus        54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~  104 (329)
                      ...+-+.+.+.+...+                ..+|...+..+-+.++++.
T Consensus        29 k~~i~~~L~~~Gv~~i----------------E~g~~~~~~~~~~~~~~~~   63 (298)
T 2cw6_A           29 KIKLIDMLSEAGLSVI----------------ETTSFVSPKWVPQMGDHTE   63 (298)
T ss_dssp             HHHHHHHHHHTTCSEE----------------CCEECCCTTTCGGGTTHHH
T ss_pred             HHHHHHHHHHHCCCEE----------------EECCCCCCCCHHHHHHHHH
T ss_conf             9999999998695989----------------9368758450787756999


No 37 
>>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:)
Probab=72.42  E-value=8  Score=19.88  Aligned_cols=195  Identities=11%  Similarity=-0.049  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHH---HCCCCEEECCCCCCCHH-HHHCC---CCEEEEEECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf             66899999999---74982365257887876-75089---7269998665223535223446789-98888235799999
Q gi|254780676|r   52 SGYKETYNILR---SRNLTTVCEEAGCPNIG-ECWNK---NHATFMILGAICTRACTFCNVATGK-PQPLDPQEPENISW  123 (329)
Q Consensus        52 ~~~~~~~~~l~---~~~L~TVCeeA~CPNi~-ECw~~---gtATFMilG~~CTR~C~FC~V~~G~-P~~~D~~EP~rvA~  123 (329)
                      +...+++++++   +.+...||--...--.. +-...   ..+..  +.   ...|..-....|. +.....-|    ++
T Consensus        45 ~~~~~~~~~~~~a~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~--i~---~~~~~~~~~~~g~~~~~~~~~~----ve  115 (304)
T 1to3_A           45 SVLTDFKVNAAKILSPYASAVLLDQQFCYRQAVEQNAVAKSCAXI--VA---ADDFIPGNGIPVDNVVLDKKIN----AQ  115 (304)
T ss_dssp             HHHHHHHHHHHHHHGGGCSEEEECTTTTHHHHHHTTCSCTTSEEE--EE---CEEEEEETTEEEEEEEECSSCC----HH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEE--EE---ECCCCCCCCCCCCCCCCCCCCC----HH
T ss_conf             168999999998620558556775677688887400347880699--98---4576468887644324445568----99


Q ss_pred             HHHHHCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---------HHHHHHHHHCCCHHHH
Q ss_conf             99970775189850-5445345325899999999998533586899815462344---------6899987410702332
Q gi|254780676|r  124 AVRSMKLSHVVITS-VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK---------PHALEKVVSAKPDVFN  193 (329)
Q Consensus       124 av~~l~Lk~vViTS-V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~---------~~al~~v~~A~pdV~n  193 (329)
                      -+.++|..-|-+.. +..||-.+.--..+.+.+.+.++..-...+|++..+....         ..+.+...++|+|++.
T Consensus       116 ~a~~~GAd~v~~~~~~g~~~~~~~~~~~i~~v~~~~~~~g~~vile~i~~~~~~~d~~~~~~~i~~a~~~a~e~GaD~iK  195 (304)
T 1to3_A          116 AVKRDGAKALKLLVLWRSDEDAQQRLNXVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYK  195 (304)
T ss_dssp             HHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEE
T ss_pred             HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99863888899986248765699999999999999987399738987314777676554088999999987643976999


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             01383000275638970358999999999970891670140488764206889999999996699399750222
Q gi|254780676|r  194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      -       -| ...++......++.++.+-+..+.    --+++|-|-+.++..+.+.+..+.|+..+.+|-=+
T Consensus       196 t-------~~-~~~~~~~~~~~v~~~~~~~~~~~~----pv~vaGG~~~~~~~~~~i~~a~~~Ga~G~~~GR~i  257 (304)
T 1to3_A          196 V-------EX-PLYGKGARSDLLTASQRLNGHINX----PWVILSSGVDEKLFPRAVRVAXEAGASGFLAGRAV  257 (304)
T ss_dssp             E-------CC-GGGGCSCHHHHHHHHHHHHHTCCS----CEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHH
T ss_pred             E-------EC-CCCCHHHHHHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf             4-------07-876045667899999998725899----68999289898999999999996799399856364


No 38 
>>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A (X:84-401)
Probab=71.52  E-value=8.4  Score=19.74  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCC---CCCC----CCH---HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             823579999999970775189850544---5345----325---899999999998533586899815462344689998
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDR---DDLD----DGG---AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEK  183 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~R---DDL~----DgG---A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~  183 (329)
                      -.++-.|+-++...+++++..+--.|.   ..+|    .+|   .+.+.+.|+--+++.=.+.-|+=+|   |...++  
T Consensus        17 ~~~~lk~~id~ma~~k~N~lhlhl~D~~~~~~~p~l~~~~~~yT~~ei~~iv~yA~~~gI~viPeid~P---GH~~~~--   91 (318)
T 2epl_X           17 NLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVPCIQTL---AHLSAF--   91 (318)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEEEECCSS---SCCHHH--
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCH---HHHHHH--
T ss_conf             999999999999980994799999846668895331147899799999999999997699998547873---778999--


Q ss_pred             HHHCCCHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHH-----------------
Q ss_conf             741070233201383000275638--9703589999999999708916701404887642068-----------------
Q gi|254780676|r  184 VVSAKPDVFNHNLETVASNYLMVR--PGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRN-----------------  244 (329)
Q Consensus       184 v~~A~pdV~nHNiETV~rLy~~VR--p~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~e-----------------  244 (329)
                       +.+.|.....+    .-....+.  .-+.|+=-.++++.+.++-.     .-+=+|.-|...                 
T Consensus        92 -~~~~~~~~~~~----~~~~~~l~~~~~~t~~~i~~i~~e~~~f~~-----~~iHiGgDE~~~~~~~~~~~~~~~~~~~~  161 (318)
T 2epl_X           92 -VKWGIKEVQEL----RDVEDILLIGEEKVYDLIEGMFQTMAHLHT-----RKINIGMDEAHLVGLGRYLIKHGFQNRSL  161 (318)
T ss_dssp             -HTCCSHHHHTT----EEETTEECTTCHHHHHHHHHHHHHHTTSSC-----CEEECCCCCCTTTTSSHHHHHHCCCCHHH
T ss_pred             -HHHCHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-----CEEEECCCCCHHHCCCHHHHHHCCCCHHH
T ss_conf             -97373853566----888851589986799999999999971899-----85896488852214313356616899899


Q ss_pred             ----HHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             ----89999999996699399750222
Q gi|254780676|r  245 ----EILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       245 ----Ei~e~l~DLr~~gvdilTiGQYL  267 (329)
                          -+.++.+-|++.|..++-=+.=+
T Consensus       162 l~~~f~~~l~~~l~~~G~~~~~W~D~~  188 (318)
T 2epl_X          162 LMCQHLERVLDIADKYGFNCQMWSDMF  188 (318)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEESGGG
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf             999999999999997899899962672


No 39 
>>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus} (A:)
Probab=69.09  E-value=9.4  Score=19.39  Aligned_cols=188  Identities=12%  Similarity=0.043  Sum_probs=100.2

Q ss_pred             HHHHHHHHHCCCEEEEEC--C-----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCC
Q ss_conf             999999970775189850--5-----4453453258999999999985335868998154623446----8999874107
Q gi|254780676|r  120 NISWAVRSMKLSHVVITS--V-----DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAK  188 (329)
Q Consensus       120 rvA~av~~l~Lk~vViTS--V-----~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~  188 (329)
                      --|..+.+.|...+-++|  +     -.+|...-.-..+...+++|....+..-|=+=.+.--|+.    ..++.++.||
T Consensus        50 ~sA~~~~~aG~~~i~~sg~~~a~~~~G~pD~~~~~~~e~~~~~~~i~~~~~~~pviaD~d~G~g~~~~v~~~v~~~~~aG  129 (318)
T 1zlp_A           50 LSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAG  129 (318)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999998399999610599996567999888787799999999998640277710421567883206999999998531


Q ss_pred             CHHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE-----EEECHHHHHHHHHHHHHCCC
Q ss_conf             02332-----013830002756389703589999999999708916701404887-----64206889999999996699
Q gi|254780676|r  189 PDVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG-----LGETRNEILQLMDDLRTADV  258 (329)
Q Consensus       189 pdV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG-----LGEt~eEi~e~l~DLr~~gv  258 (329)
                      .+-++     +.-.+...+.+.+.|...+-..+..-..+.. ++++.     ++.     ..+..+|+++-.+-+.++|+
T Consensus       130 a~gv~IED~~~~k~~~~~~~~~~i~~~~~~~~i~aa~~a~~-~~d~~-----i~ARtd~~~~~~~~eai~Ra~a~~~AGA  203 (318)
T 1zlp_A          130 AKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIG-DSDFF-----LVARTDARAPHGLEEGIRRANLYKEAGA  203 (318)
T ss_dssp             CCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHT-TSCCE-----EEEEECTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEE-----EEECCHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             12022101002444664321003468899999998875147-86225-----6764101003786999999988788626


Q ss_pred             CEEECCHHCCC-----C--CCCCCCCCCCCH------HHHHHHHHHHHHCCCCEEECCCC-CCCCHHHHHHHH
Q ss_conf             39975022278-----6--100780002384------69999999999749624340483-001031899999
Q gi|254780676|r  259 DFLTMGQYLQP-----T--RKHHKVESFVTP------QDFKSYETIAYSKGFLMVSASPL-TRSSYHAGDDFL  317 (329)
Q Consensus       259 dilTiGQYL~P-----s--~~h~pV~ryv~P------~eF~~~~~~a~~~Gf~~V~SgPl-VRSSY~A~e~~~  317 (329)
                      |.+-+--.--+     -  .-+.|+.-...+      -.|+++    .++|+..|.-++. .|+.|.+-....
T Consensus       204 d~i~i~~~~~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~el----~~lG~~~v~~~~~~~~~~~~~~~~a~  272 (318)
T 1zlp_A          204 DATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEF----KEMGFHLIAHSLTAVYATARALVNIM  272 (318)
T ss_dssp             SEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHH----HHHTCCEEEECSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHH----HHCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf             7677313688889999999853655540014885011239999----86797299964299999999999999


No 40 
>>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} (A:)
Probab=68.18  E-value=4.8  Score=21.46  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEE-------------ECCCCC--C
Q ss_conf             882357999999997077518985054453453258-999999999985335868998-------------154623--4
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-QHFAEVISAIRESAPSTTIEV-------------LTPDFL--R  176 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-~hfa~~I~~Ir~~~P~~~IEv-------------LiPDf~--G  176 (329)
                      +|..-..++++++.+-|..++-|      |.+||-. ..+.+.++++++..+...+..             +.+|..  .
T Consensus        17 pd~~~~~~~l~~l~~~g~d~ihi------gi~Dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~   90 (234)
T 2f6u_A           17 PDRTNTDEIIKAVADSGTDAVMI------SGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSA   90 (234)
T ss_dssp             TTSCCCHHHHHHHHTTTCSEEEE------CCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCCCCCCCSSEEEEEEETTBS
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEE------CCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             89985899999999759999998------588644576699999999973997686516688876334765204776367


Q ss_pred             CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC----------CCCH---------HH---H--------------------
Q ss_conf             4689998741070233201383000275638----------9703---------58---9--------------------
Q gi|254780676|r  177 KPHALEKVVSAKPDVFNHNLETVASNYLMVR----------PGAR---------YF---H--------------------  214 (329)
Q Consensus       177 ~~~al~~v~~A~pdV~nHNiETV~rLy~~VR----------p~a~---------Y~---r--------------------  214 (329)
                      ..+-++....++++.+-=..||.+.+.+.++          +...         +.   .                    
T Consensus        91 ~~~~~~~~~~~g~~~i~~~~e~~~~~~~~i~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  170 (234)
T 2f6u_A           91 DGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIE  170 (234)
T ss_dssp             BGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCHHCCCHHHHHHHHHHHCCCCEEEECCCCHHCCCHHHHHCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             91120337999999998368845786897043234466626006943885169989899999999863301279999986


Q ss_pred             ------HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             ------99999999970891670140488764206889999999996699399750222
Q gi|254780676|r  215 ------SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       215 ------SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                            ..+.+...++.++    .-=+++|-|=+.+++.+    +.++|+|.+.+|-++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~----~~~I~vgGGI~~~~~~~----~~~aGAD~vVvGSai  221 (234)
T 2f6u_A          171 YSGTYGNPELVAEVKKVLD----KARLFYGGGIDSREKAR----EMLRYADTIIVGNVI  221 (234)
T ss_dssp             CTTSCCCHHHHHHHHHHCS----SSEEEEESCCCSHHHHH----HHHHHSSEEEECHHH
T ss_pred             CCCCCCCHHHHHHHHHHCC----CCCEEEECCCCCHHHHH----HHHHHCCEEEECHHH
T ss_conf             4666542126999998636----99789986859999999----999609999989599


No 41 
>>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* (A:)
Probab=67.62  E-value=5.9  Score=20.85  Aligned_cols=170  Identities=14%  Similarity=-0.015  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCC-------CCCCCCHHHHHHHHHHHHHHHCC--CCE--EEEECCC---CCCCHHHHH
Q ss_conf             579999999970775189850544-------53453258999999999985335--868--9981546---234468999
Q gi|254780676|r  117 EPENISWAVRSMKLSHVVITSVDR-------DDLDDGGAQHFAEVISAIRESAP--STT--IEVLTPD---FLRKPHALE  182 (329)
Q Consensus       117 EP~rvA~av~~l~Lk~vViTSV~R-------DDL~DgGA~hfa~~I~~Ir~~~P--~~~--IEvLiPD---f~G~~~al~  182 (329)
                      .-.+..+..+.||.+++++.+-.+       +...+..-..+++.++++-+...  ++.  +|-..+.   +....+.+.
T Consensus       108 ~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~  187 (309)
T 2hk0_A          108 FFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCIEVLNRFENHVLNTAAEGV  187 (309)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99999999998389989854523668767888789999999999999999877640443002567765555669899998


Q ss_pred             HHHH-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCE-
Q ss_conf             8741-07023320138300027563897035899999999997089167014048876420688999999999669939-
Q gi|254780676|r  183 KVVS-AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDF-  260 (329)
Q Consensus       183 ~v~~-A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi-  260 (329)
                      .+++ .+.+.+.-++.+--..    +.+   ....+.++.....-..+..|-...+-+||.+.+..+++..|++.|.+- 
T Consensus       188 ~l~~~~~~~~~~~~~D~~h~~----~~~---~~~~~~i~~~~~~i~~vHikD~~~~~~G~G~~d~~~~l~~L~~~gy~g~  260 (309)
T 2hk0_A          188 AFVKDVGKNNVKVXLDTFHXN----IEE---DSFGDAIRTAGPLLGHFHTGESNRRVPGKGRXPWHEIGLALRDINYTGA  260 (309)
T ss_dssp             HHHHHHTCTTEEEEEEHHHHH----HHC---SCHHHHHHHHGGGEEEEEECCTTSCCTTSSCCCHHHHHHHHHHTTCCSE
T ss_pred             HHHHHHCCCCCCCCCCCHHHH----HCC---CCHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             888862487532124405788----749---9999999872183889998479899999976499999999998599816


Q ss_pred             EECCHHCCCCCCC-------CCCCCCCCHHHHHHHHHHHH
Q ss_conf             9750222786100-------78000238469999999999
Q gi|254780676|r  261 LTMGQYLQPTRKH-------HKVESFVTPQDFKSYETIAY  293 (329)
Q Consensus       261 lTiGQYL~Ps~~h-------~pV~ryv~P~eF~~~~~~a~  293 (329)
                      +++=.+-++-...       -...+.+..+..+....-+.
T Consensus       261 i~~E~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  300 (309)
T 2hk0_A          261 VIXEPFVKTGGTIGSDIKVWRDLSGGADIAKXDEDARNAL  300 (309)
T ss_dssp             EEECCCCCCSHHHHHHTTCCSCCSCSCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             9999687888256777777641454521123799999999


No 42 
>>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural genomics, protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} (A:137-268)
Probab=66.90  E-value=10  Score=19.09  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             ECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             2068899999999966993997502227-8610078000238469999999999749624340
Q gi|254780676|r  241 ETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA  302 (329)
Q Consensus       241 Et~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S  302 (329)
                      ++.+|+.+.++++...|+|.+-|=.-=- .+....+-.-|++|+++..+-+.|.+.|+....-
T Consensus        27 ~~~~~~~~~v~~~~~~g~d~IKi~~dg~~~~~~~~~~~~~~~~e~l~~iv~~A~~~G~~v~~H   89 (132)
T 3be7_A           27 DSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAH   89 (132)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             679999999887665432110001245533234543111145777778888876543221110


No 43 
>>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} (A:)
Probab=66.77  E-value=10  Score=19.07  Aligned_cols=80  Identities=9%  Similarity=0.082  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCC
Q ss_conf             88823579999999970775189850544534532589999999999853358689981546234---468999874107
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAK  188 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~  188 (329)
                      .....|-...|..++++|...+++...---.+.+.+.-.|   .++|-+..+--.+=--.|..-|   ..+.+..+.+..
T Consensus        90 ~~~~~~~~~~a~~a~~~Gad~v~v~pP~~~~~s~~~i~~~---~~~i~~a~~~pi~iY~~P~~~g~~~~~~~l~~l~~~~  166 (306)
T 1o5k_A           90 TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQH---YKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADL  166 (306)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHH---HHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf             7439999999999996699999987999999799999999---9999970799789997863047886177899999705


Q ss_pred             CHHHHH
Q ss_conf             023320
Q gi|254780676|r  189 PDVFNH  194 (329)
Q Consensus       189 pdV~nH  194 (329)
                      |.|...
T Consensus       167 ~~i~~~  172 (306)
T 1o5k_A          167 KNVVGI  172 (306)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
T ss_conf             826999


No 44 
>>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:523-742,A:762-821)
Probab=65.78  E-value=11  Score=18.94  Aligned_cols=168  Identities=11%  Similarity=0.025  Sum_probs=97.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHH--
Q ss_conf             4534532589999999999853358---68998154623446899987410702332013830002756389703589--
Q gi|254780676|r  140 RDDLDDGGAQHFAEVISAIRESAPS---TTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFH--  214 (329)
Q Consensus       140 RDDL~DgGA~hfa~~I~~Ir~~~P~---~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~r--  214 (329)
                      +.-+.-.+..|+......-....+.   ..++....+-..-.++.+.+.+++.|.+.=|+-..--+...-...+...|  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aa~~~~~~g~d~Iein~~~~~~~~~~~~g~~~~~~~~  167 (280)
T 1gte_A           88 IELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPE  167 (280)
T ss_dssp             CCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             54524554999999777642126877345775688999999999997453588889997678999874333431101689


Q ss_pred             -HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             -99999999970891670140488764206889999999996699399750--222786100780002384699999999
Q gi|254780676|r  215 -SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETI  291 (329)
Q Consensus       215 -SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~  291 (329)
                       .++.++.+++.-     ..-+.+++-=+.+|..+.+..|.++|+|.|+|-  .+=|-...|  .-..+.+..+..+.+.
T Consensus       168 ~~~e~i~~v~~~~-----~~pv~vk~r~~~~d~~e~a~~l~e~Gvd~I~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  240 (280)
T 1gte_A          168 LVRNICRWVRQAV-----QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMYGGV--SGTAIRPIALRAVTTI  240 (280)
T ss_dssp             HHHHHHHHHHHHC-----SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCEEE--ESGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE--CCHHHHHHHHHHHHHH
T ss_conf             9999999986178-----99879997998278999999999859969999567776556700--2788899999999999


Q ss_pred             HHHC-CCCEEECCCCCCCCHHHHHH
Q ss_conf             9974-96243404830010318999
Q gi|254780676|r  292 AYSK-GFLMVSASPLTRSSYHAGDD  315 (329)
Q Consensus       292 a~~~-Gf~~V~SgPlVRSSY~A~e~  315 (329)
                      .... ++.-+++|= +|+..++-+.
T Consensus       241 ~~~~~~~~ii~~gg-i~~~~~~~~~  264 (280)
T 1gte_A          241 ARALPGFPILATGG-IDSAESGLQF  264 (280)
T ss_dssp             HHHSTTCCEEEESS-CCSHHHHHHH
T ss_pred             HHHCCCCCEEEECC-CCCHHHHHHH
T ss_conf             98769987999899-8999999999


No 45 
>>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A (A:1-117,A:285-340)
Probab=64.96  E-value=9  Score=19.53  Aligned_cols=58  Identities=12%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH--CCCHHHHHCCCCCCCCCC
Q ss_conf             5899999999998533586899815462344689998741--070233201383000275
Q gi|254780676|r  147 GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS--AKPDVFNHNLETVASNYL  204 (329)
Q Consensus       147 GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~--A~pdV~nHNiETV~rLy~  204 (329)
                      ....+-+.|++-.+.+|+++|++-.-++.+-.+.|.+.+.  ..|||+.-+-.-+..+..
T Consensus        18 ~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~kl~~~~a~g~~pDi~~~~~~~~~~~~~   77 (173)
T 2uvj_A           18 RHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSK   77 (173)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEEEECSTTHHHHHHHHHHHTCCCSEEEECGGGHHHHCT
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             999999999999998849489999789379999999999779988699989578999998


No 46 
>>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:475-637)
Probab=63.69  E-value=12  Score=18.68  Aligned_cols=72  Identities=13%  Similarity=-0.112  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC
Q ss_conf             35799999999707751898505445345325899999999998533586899815462344689998741070233201
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN  195 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN  195 (329)
                      +-|..+.++++.-+-..++|+|.+     .+....+.+.|+++|+..|++.|=+=-.=|..+   .+.+.++|.|.+-++
T Consensus        73 ~~p~~~~~a~~~~~~d~i~ls~~~-----~~~~~~~~~~i~~lr~~~~~~~vi~GG~~~~~~---~~~~~~~G~D~~~~~  144 (163)
T 1req_B           73 GTTAEIVEAFKKSGAQVADLCSSA-----KVYAQQGLEVAKALKAAGAKALYLSGAFKEFGD---DAAEAEKLIDGRLFM  144 (163)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEECCH-----HHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGG---GHHHHHHHCCCEECT
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCC-----CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---HHHHHHCCCCEEECC
T ss_conf             998999999986599889995786-----106888999999999669985999727887423---568997087605018


No 47 
>>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} (A:1-351)
Probab=62.76  E-value=12  Score=18.57  Aligned_cols=20  Identities=10%  Similarity=0.013  Sum_probs=10.8

Q ss_pred             HHHHHHCCCCEEECCHHCCC
Q ss_conf             99999669939975022278
Q gi|254780676|r  250 MDDLRTADVDFLTMGQYLQP  269 (329)
Q Consensus       250 l~DLr~~gvdilTiGQYL~P  269 (329)
                      ..-+-.-|+-+|--||-.-=
T Consensus       297 ~~~~~~~G~P~i~~G~E~g~  316 (351)
T 3dhu_A          297 TWIFMQRGIPLIYNGQEFLA  316 (351)
T ss_dssp             HHHHHSSSEEEEETTGGGTC
T ss_pred             HHHHCCCCCCEECCCEEECC
T ss_conf             67750898763048835233


No 48 
>>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:152-269)
Probab=62.65  E-value=12  Score=18.55  Aligned_cols=60  Identities=12%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             EECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             420688999999999669939975---022278-610078000238469999999999749624340
Q gi|254780676|r  240 GETRNEILQLMDDLRTADVDFLTM---GQYLQP-TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA  302 (329)
Q Consensus       240 GEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S  302 (329)
                      -.+.+|++..++.+.+-|.|.+++   +-|+.+ .....+   +++++|+..+-+.|.+.|+....-
T Consensus        12 v~~~~~~~~~vk~~~~~g~d~ik~~~~~~~~~~~~~~~~~---~~~~eel~~~v~~A~~~G~~v~~H   75 (118)
T 3gnh_A           12 SDSPDEARKAVRTLKKYGAQVIXICATGGVFSRGNEPGQQ---QLTYEEMKAVVDEAHMAGIKVAAH   75 (118)
T ss_dssp             CCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCB---CSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             3309999999998775221033332024444333466555---578999999999999709907885


No 49 
>>1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} (A:)
Probab=62.22  E-value=8.3  Score=19.79  Aligned_cols=107  Identities=11%  Similarity=0.123  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHCCCHHH------------HHCCCCCCCCCCCCCCC
Q ss_conf             453258999999999985335868998-15462344689998741070233------------20138300027563897
Q gi|254780676|r  143 LDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRKPHALEKVVSAKPDVF------------NHNLETVASNYLMVRPG  209 (329)
Q Consensus       143 L~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~~A~pdV~------------nHNiETV~rLy~~VRp~  209 (329)
                      |.+|--.+..+.+..+|+.+-.+-|-+ |+..+..++.+++-+.+-+||-+            ..++-|+-|+|  +-+.
T Consensus        37 ll~g~I~~L~~~v~~lk~~gK~vfVHiDli~GL~~D~~ai~fLk~~~~dGIISTk~~~i~~Ak~~gl~tIqRiF--liDS  114 (188)
T 1vkf_A           37 LLKSDILNLKFHLKILKDRGKTVFVDXDFVNGLGEGEEAILFVKKAGADGIITIKPKNYVVAKKNGIPAVLRFF--ALDS  114 (188)
T ss_dssp             ECCEETTTHHHHHHHHHHTTCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEESCHHHHHHHHHTTCCEEEEEE--CCSH
T ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEEEE--EEEH
T ss_conf             95684888999999999869989998651677788879999999759999997889999999977992898765--4527


Q ss_pred             CHHHHHHHHHHHHHHCCCEEE-------------ECCCEEEEEEECHHHHHHHHH
Q ss_conf             035899999999997089167-------------014048876420688999999
Q gi|254780676|r  210 ARYFHSLRLLQRVKELDPLIF-------------TKSGIMLGLGETRNEILQLMD  251 (329)
Q Consensus       210 a~Y~rSL~vL~~aK~~~~~i~-------------TKSGlMvGLGEt~eEi~e~l~  251 (329)
                      ..|+++++.++..+--.-.+.             .+.=+-=||=+|.|||.+++.
T Consensus       115 ~al~~~~~~i~~~~PD~IEilPG~~~~~ii~~~~~~PiIAGGLI~~~edv~~al~  169 (188)
T 1vkf_A          115 KAVERGIEQIETLGVDVVEVLPGAVAPKVARKIPGRTVIAAGLVETEEEAREILK  169 (188)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESGGGHHHHHTTSTTSEEEEESCCCSHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             7899999998536999999865341799998625992996367188999999996


No 50 
>>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:1-333)
Probab=61.64  E-value=13  Score=18.43  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHCCC-CEEEEECCCCC---------CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             89999999999853358-68998154623---------446899987410702332013830002756389703589999
Q gi|254780676|r  148 AQHFAEVISAIRESAPS-TTIEVLTPDFL---------RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLR  217 (329)
Q Consensus       148 A~hfa~~I~~Ir~~~P~-~~IEvLiPDf~---------G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~  217 (329)
                      +....++|++||+..+. ..|-+-+....         ...+-++.+.+++.|.+.--.-+....++.......-..-++
T Consensus       191 ~r~~~eii~air~~~g~~~~v~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~g~d~l~v~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T 1ps9_A          191 MRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSW  270 (333)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             89999999989866299735888436511256899889999999999982873030223543456765567765116699


Q ss_pred             HHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             99999970891670140488764206889999999996699399750222
Q gi|254780676|r  218 LLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       218 vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      +++.+|+...    +-=++.|-.-|.++..++   |.+-+||++-||.-+
T Consensus       271 ~~~~~~~~~~----~pvi~~G~i~~~~~a~~~---l~~g~~D~V~igR~~  313 (333)
T 1ps9_A          271 VTRKLKGHVS----LPLVTTNRINDPQVADDI---LSRGDADMVSMARPF  313 (333)
T ss_dssp             HHHHHTTSCS----SCEEECSSCCSHHHHHHH---HHTTSCSEEEESTHH
T ss_pred             HHHHHHHHCC----CCEEEECCCCCHHHHHHH---HHCCCCCEEHHHHHH
T ss_conf             9999974157----778983797779999999---987998764113598


No 51 
>>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245)
Probab=60.30  E-value=14  Score=18.27  Aligned_cols=92  Identities=8%  Similarity=-0.018  Sum_probs=56.2

Q ss_pred             CCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHH
Q ss_conf             4623446899987410702332013830002756389703589999999999708916701404887642-068899999
Q gi|254780676|r  172 PDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLM  250 (329)
Q Consensus       172 PDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l  250 (329)
                      .|+.+-...++.++++|.+.+-=+--|-|-.+      -+-+..+++++.+.+...   .+--+|+|.|. +-+|.++..
T Consensus        22 iD~~~~~~~i~~l~~~Gv~gi~~~G~tgE~~~------Lt~~Er~~l~~~~~~~~~---~~~~v~~g~~~~~~~~~ie~a   92 (245)
T 3eb2_A           22 VRADVMGRLCDDLIQAGVHGLTPLGSTGEFAY------LGTAQREAVVRATIEAAQ---RRVPVVAGVASTSVADAVAQA   92 (245)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGG------CCHHHHHHHHHHHHHHHT---TSSCBEEEEEESSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCHHHH------CCHHHHHHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHH
T ss_conf             69999999999999769998998564321655------989999988765430354---432047403455568787754


Q ss_pred             HHHHHCCCCEEECC--HHCCCCCC
Q ss_conf             99996699399750--22278610
Q gi|254780676|r  251 DDLRTADVDFLTMG--QYLQPTRK  272 (329)
Q Consensus       251 ~DLr~~gvdilTiG--QYL~Ps~~  272 (329)
                      +...++|+|.+-+.  .|..||..
T Consensus        93 ~~a~~~G~d~il~~pP~~~~~~~~  116 (245)
T 3eb2_A           93 KLYEKLGADGILAILEAYFPLKDA  116 (245)
T ss_dssp             HHHHHHTCSEEEEEECCSSCCCHH
T ss_pred             HCCCCCCCEEEECCCCCCCCCCHH
T ss_conf             202357950785046653565478


No 52 
>>2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} (A:)
Probab=59.63  E-value=14  Score=18.20  Aligned_cols=85  Identities=9%  Similarity=0.082  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEE--ECCC-EEEE---EEECHHHHHHHH
Q ss_conf             68999874107023320138300027563897035899999999997-089167--0140-4887---642068899999
Q gi|254780676|r  178 PHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKE-LDPLIF--TKSG-IMLG---LGETRNEILQLM  250 (329)
Q Consensus       178 ~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~-~~~~i~--TKSG-lMvG---LGEt~eEi~e~l  250 (329)
                      .+.++.++++|.+-++=+=.++..-- .+.+.+.+-.++..+..+.. .++++.  -.+- ...|   .+++.+|.++-+
T Consensus        96 ~~~v~~~~~aGa~~v~ied~~~~~~~-~~~~~~~~~~~i~a~~~~~~~~~~~~~i~art~~~~~~~~~~~~~~~e~i~r~  174 (255)
T 2qiw_A           96 ADLIAQILEAGAVGINVEDVVHSEGK-RVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPXVEAIKRI  174 (255)
T ss_dssp             HHHHHHHHHTTCCEEEECSEEGGGTT-EECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             99999999833643675035366675-32339999999999998665148706874127778606774223558999999


Q ss_pred             HHHHHCCCCEEEC
Q ss_conf             9999669939975
Q gi|254780676|r  251 DDLRTADVDFLTM  263 (329)
Q Consensus       251 ~DLr~~gvdilTi  263 (329)
                      +...++|.|.+-+
T Consensus       175 ~~~~~aGA~~i~~  187 (255)
T 2qiw_A          175 KLXEQAGARSVYP  187 (255)
T ss_dssp             HHHHHHTCSEEEE
T ss_pred             HHHHHCCCCEEEE
T ss_conf             9999728983650


No 53 
>>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} (A:)
Probab=59.19  E-value=11  Score=18.85  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCC
Q ss_conf             999999999708916701404887642068899999999966993997502227
Q gi|254780676|r  215 SLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQ  268 (329)
Q Consensus       215 SL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~  268 (329)
                      ..+-++.++.......+..+...|.+-...+-..+..++.+.|+|++.+|..+-
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Ga~~ivvGR~I~  225 (245)
T 1eix_A          172 EAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVT  225 (245)
T ss_dssp             GHHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHHC
T ss_conf             899999872545558804757545454887774799999985999999895661


No 54 
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:495-825,A:946-1003)
Probab=58.95  E-value=14  Score=18.12  Aligned_cols=72  Identities=13%  Similarity=0.258  Sum_probs=38.6

Q ss_pred             HHHCCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCC---EEECCHHCCCCCCC-CC--------CCCCCCHH
Q ss_conf             997089167014048876420-----68899999999-966993---99750222786100-78--------00023846
Q gi|254780676|r  222 VKELDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVD---FLTMGQYLQPTRKH-HK--------VESFVTPQ  283 (329)
Q Consensus       222 aK~~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvd---ilTiGQYL~Ps~~h-~p--------V~ryv~P~  283 (329)
                      |-++|-++.  .+=+.||||.     -|.++..++.+ ++.|+|   +..|.+|+++-... .|        -..-..|+
T Consensus       262 Ai~aGvd~V--D~si~gmg~~tGn~~le~lv~~L~~~g~~~~idl~~l~~i~~~~~~~~~~~~~~~~~~~G~p~~~l~~~  339 (389)
T 3hbl_A          262 AIDAGVDII--DTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPPGEYLEPV  339 (389)
T ss_dssp             HHHTTCSEE--EEBCGGGCSBTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGGGGCCSCCSCGGGGSCCC
T ss_pred             HHHCCCCEE--EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC
T ss_conf             997499889--841133557768976899999984588665562989999999999999997522466666656747984


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999974
Q gi|254780676|r  284 DFKSYETIAYSK  295 (329)
Q Consensus       284 eF~~~~~~a~~~  295 (329)
                      .|+..++...++
T Consensus       340 d~~~~~~~~~~~  351 (389)
T 3hbl_A          340 DFEKVRELLEEE  351 (389)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             799999999985


No 55 
>>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} (A:)
Probab=57.55  E-value=15  Score=17.96  Aligned_cols=125  Identities=7%  Similarity=0.001  Sum_probs=72.6

Q ss_pred             HHHHCCCHHHHHCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHHH-CCCEEEECCCEEEEEEECHHHHHHHHHHH
Q ss_conf             87410702332013830002756389703--------5899999999997-08916701404887642068899999999
Q gi|254780676|r  183 KVVSAKPDVFNHNLETVASNYLMVRPGAR--------YFHSLRLLQRVKE-LDPLIFTKSGIMLGLGETRNEILQLMDDL  253 (329)
Q Consensus       183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~--------Y~rSL~vL~~aK~-~~~~i~TKSGlMvGLGEt~eEi~e~l~DL  253 (329)
                      .+...+.+.+.=|+-+.+..   ++.+..        .+..+++++.+++ .+..+.  -.+-++.+++.+|..+.+.-|
T Consensus       160 ~~~~~ga~~~~l~~~~~~~~---~~~~~~~g~~l~~~~~~~~~ii~~vr~~~~~~~~--vk~~~~~~~~~~~~~~~a~~l  234 (336)
T 1f76_A          160 EKIYAYAGYIAINISSPNTP---GLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVP--IAVKIAPDLSEEELIQVADSL  234 (336)
T ss_dssp             HHHGGGCSEEEEECCCSSST---TGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCC--EEEECCSCCCHHHHHHHHHHH
T ss_pred             HHHCCCCCEEEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHH
T ss_conf             85332578545447898875---6567742577776589999999999975287631--899954899989999999999


Q ss_pred             HHCCCCEEECCH----HCCCCCC------CCCCCCCCCHHHHHHHHHHHHHC--CCCEEECCCCCCCCHHHH
Q ss_conf             966993997502----2278610------07800023846999999999974--962434048300103189
Q gi|254780676|r  254 RTADVDFLTMGQ----YLQPTRK------HHKVESFVTPQDFKSYETIAYSK--GFLMVSASPLTRSSYHAG  313 (329)
Q Consensus       254 r~~gvdilTiGQ----YL~Ps~~------h~pV~ryv~P~eF~~~~~~a~~~--Gf~~V~SgPlVRSSY~A~  313 (329)
                      .++|+|.+++..    .+.-...      ...-.....|..+..+..+....  ++.-+.+|= ++|.-.|.
T Consensus       235 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ipvi~~GG-I~~~~da~  305 (336)
T 1f76_A          235 VRHNIDGVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGG-IDSVIAAR  305 (336)
T ss_dssp             HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESS-CCSHHHHH
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHH
T ss_conf             966998899992675211334642123457656632369999999999998289957999899-99999999


No 56 
>>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} (A:)
Probab=56.66  E-value=16  Score=17.86  Aligned_cols=190  Identities=13%  Similarity=0.124  Sum_probs=108.0

Q ss_pred             CHHHCCCCCCC--HHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             82450017998--6689999999974982365257887876750897269998665223535223446789988882357
Q gi|254780676|r   41 PDWIRVRAPVS--SGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEP  118 (329)
Q Consensus        41 P~Wlk~~~p~~--~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP  118 (329)
                      |..+-...-.|  ..+..+-.+++++++                   .|||-+-|+.+-.+          ....++++-
T Consensus        41 ~~~v~lTFDDG~~~~~~~~~~iL~k~~~-------------------~aTfFv~~~~~~~~----------~~~~~~~~~   91 (254)
T 2iw0_A           41 PGLVALTYDDGPFTFTPQLLDILKQNDV-------------------RATFFVNGNNWANI----------EAGSNPDTI   91 (254)
T ss_dssp             SSEEEEEEESCSCTTHHHHHHHHHHHTC-------------------CCEEEECSBSSSBT----------TSTTHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCC-------------------CEEEEEECCCCCCC----------HHHHCHHHH
T ss_conf             9979999818980539999999998798-------------------19999978865644----------355699999


Q ss_pred             HHHHHHHHHH---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC
Q ss_conf             9999999970---7751898505445345325899999999998533586899815462344689998741070233201
Q gi|254780676|r  119 ENISWAVRSM---KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN  195 (329)
Q Consensus       119 ~rvA~av~~l---~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN  195 (329)
                      ...+.+-..+   +..|.-++.++    ++.-...+....+.+++.......-..-|-..-+...++.+.+.+-.+..++
T Consensus        92 ~~~~~~g~ei~~Ht~~H~~~~~~~----~~~~~~ei~~~~~~l~~~~g~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~  167 (254)
T 2iw0_A           92 RRMRADGHLVGSHTYAHPDLNTLS----SADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTN  167 (254)
T ss_dssp             HHHHHTTCEEEECCSSCCCGGGSC----HHHHHHHHHHHHHHHHHHHSCEESEECCGGGCCCHHHHHHHHHTTCEEECCS
T ss_pred             HHHHHCCCEEECCCCCCCCHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             999855878841641115453317----6888899999999999861988732567067887899999997599898077


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE-EEEEECHH----HHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf             38300027563897035899999999997089167014048-87642068----8999999999669939975022278
Q gi|254780676|r  196 LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM-LGLGETRN----EILQLMDDLRTADVDFLTMGQYLQP  269 (329)
Q Consensus       196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM-vGLGEt~e----Ei~e~l~DLr~~gvdilTiGQYL~P  269 (329)
                      ..+..-.+..   .....++  ..+.+.... ....+.|.. +...-..+    -+-+.++-|++.|-.++|+.+++--
T Consensus       168 ~~~~~~~~~~---~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~G~~~~~~~~~~~~  240 (254)
T 2iw0_A          168 LDTKDYENNK---PETTHLS--AEKFNNELS-ADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGD  240 (254)
T ss_dssp             EECCTTTSCS---TTTHHHH--HHHHHHHSC-SCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTC
T ss_pred             CCCCCCCCCC---CCHHHHH--HHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCC
T ss_conf             4563145789---7416899--999999997-34479998999469976589999999999999879989887995264


No 57 
>>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} (A:117-328,A:386-528)
Probab=55.92  E-value=16  Score=17.78  Aligned_cols=16  Identities=19%  Similarity=0.258  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHCCCCE
Q ss_conf             9999999985335868
Q gi|254780676|r  151 FAEVISAIRESAPSTT  166 (329)
Q Consensus       151 fa~~I~~Ir~~~P~~~  166 (329)
                      +.+..+++++.+|+..
T Consensus       173 l~el~~~~~~~~~~~~  188 (355)
T 2bhu_A          173 LTELAQEIHELGGTHL  188 (355)
T ss_dssp             HHHHHHHHHTTCSCCE
T ss_pred             HHHHHHHHHHHCCCCE
T ss_conf             4677888876478705


No 58 
>>3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} (A:1-65,A:123-313)
Probab=55.80  E-value=16  Score=17.77  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             3579999999970775-189850544534532589999999999853358689981546234468999874107023320
Q gi|254780676|r  116 QEPENISWAVRSMKLS-HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH  194 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk-~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH  194 (329)
                      +-+..|++.+++.+.. .|++.|-+            ...++.+++.+|++.+-.|+.....................+=
T Consensus       108 ~~~~~v~~~l~~~~~~~rv~vsSf~------------~~~l~~i~~~~p~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  175 (256)
T 3l12_A          108 EXVAAVLADVRRYRXEPRTVXHSFD------------WALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDR  175 (256)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEEEESC------------HHHHHHHHHHCTTSCEEEEECCCC-------------CCCTTT
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECC------------HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHH
T ss_conf             8999999999862887747999599------------9999999986999868998732422120445443221521555


Q ss_pred             CCCCCCCCCCCCCC---CCHHH-HHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             13830002756389---70358-999999999970891670140488764206889999999996699399750
Q gi|254780676|r  195 NLETVASNYLMVRP---GARYF-HSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMG  264 (329)
Q Consensus       195 NiETV~rLy~~VRp---~a~Y~-rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiG  264 (329)
                      +...........+.   .-.|. -+-++++.+++.|..+.+=      --++.    +.|..+.+.|||.++-.
T Consensus       176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~W------Tvn~~----~~~~~~~~~GVdgIiTD  239 (256)
T 3l12_A          176 XTESLPQAVASAGGQLWCPYFLDVTPELVAEAHDLGLIVLTW------TVNEP----EDIRRXATTGVDGIVTD  239 (256)
T ss_dssp             CCSCHHHHHHHHTCSEEEEBGGGCCHHHHHHHHHTTCEEEEB------CCCSH----HHHHHHHHHTCSEEEES
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHCCCEEEEE------CCCCH----HHHHHHHHCCCCEEEEC
T ss_conf             356778899851883114424108999999999879989997------99989----99999986599999978


No 59 
>>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} (A:)
Probab=55.33  E-value=16  Score=17.71  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=20.4

Q ss_pred             EEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf             76420688999999999669939975022278610
Q gi|254780676|r  238 GLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRK  272 (329)
Q Consensus       238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~  272 (329)
                      .-|.+.+|.++.+..|.+.|+|.+++...-.++..
T Consensus       223 ~~~~~~~e~~~~~~~l~~~g~~~i~~~~~~~~~~~  257 (338)
T 1z41_A          223 DKGLDIADHIGFAKWXKEQGVDLIDCSSGALVHAD  257 (338)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             78720043699999999849863112212334555


No 60 
>>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} (A:134-273)
Probab=54.90  E-value=17  Score=17.67  Aligned_cols=69  Identities=3%  Similarity=-0.008  Sum_probs=34.8

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCCEEEC-CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             048876420688999999999669939975-022278610078000238469999999999749624340
Q gi|254780676|r  234 GIMLGLGETRNEILQLMDDLRTADVDFLTM-GQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA  302 (329)
Q Consensus       234 GlMvGLGEt~eEi~e~l~DLr~~gvdilTi-GQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S  302 (329)
                      +.+-..-++.+|......+....++|.+-+ ..-.-.+.....-.-|++||+|..+-+.|.+.|+....-
T Consensus        29 ~~~~~~~~~~~e~~~~~~~~~~~~~d~iKi~~dg~~~~~~~~~~~~~~~~e~l~~~v~~a~~~G~~v~~H   98 (140)
T 3feq_A           29 GAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAH   98 (140)
T ss_dssp             TCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2211245789999999999765022022211145533234553210001566666677776420012221


No 61 
>>1zy9_A Alpha-galactosidase; TM1192, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} (A:193-388)
Probab=54.32  E-value=17  Score=17.60  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CC-CHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             88823579999999970775189850544534----53-25899999999998533586899
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDL----DD-GGAQHFAEVISAIRESAPSTTIE  168 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL----~D-gGA~hfa~~I~~Ir~~~P~~~IE  168 (329)
                      ..|.++-...+..++.||..+++|..+--+|.    +| +.-..+.+.|++++++.-.+.+-
T Consensus        16 ~~~~~~v~~~l~~~k~lG~~~i~ld~~~~~~~~~~~~~~~~~~d~~~~v~~~h~~g~~v~~~   77 (196)
T 1zy9_A           16 DLTWEETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEXAKVIAENGFIPGIW   77 (196)
T ss_dssp             GCCHHHHHHHHHHGGGTTCSEEEECTTSEEETTEEEEECTTCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             78999999999998718971998377867478854588654689999999998679808999


No 62 
>>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* (A:1-165)
Probab=54.01  E-value=17  Score=17.57  Aligned_cols=79  Identities=6%  Similarity=-0.000  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             25899999999998533586899815462344689998741070233201383000275638970358999999999970
Q gi|254780676|r  146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL  225 (329)
Q Consensus       146 gGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~  225 (329)
                      |-.-...-.++++|+..|++.|.+++..      ..+-++...|.|-..-.-...+............+.+..++..+..
T Consensus        12 GD~i~~~p~l~~Lk~~~P~a~I~~l~~~------~~~~l~~~~p~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~   85 (165)
T 2gt1_A           12 GDVLHTLPALTDAQQAIPGIKFDWVVEE------GFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAK   85 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEEG------GGTHHHHTSTTEEEEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECH------HHHHHHHHCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             8999999999999987899989999896------4899985199855899945500013554005789999999997116


Q ss_pred             CCEEE
Q ss_conf             89167
Q gi|254780676|r  226 DPLIF  230 (329)
Q Consensus       226 ~~~i~  230 (329)
                      +.++.
T Consensus        86 ~~Dlv   90 (165)
T 2gt1_A           86 NYDAV   90 (165)
T ss_dssp             BCSEE
T ss_pred             CCCEE
T ss_conf             88889


No 63 
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020)
Probab=53.81  E-value=17  Score=17.55  Aligned_cols=169  Identities=9%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHHHHHHHHHC
Q ss_conf             82357999999997077518985054----4534532589999999999853358689981546234--46899987410
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVD----RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR--KPHALEKVVSA  187 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~----RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G--~~~al~~v~~A  187 (329)
                      |...-+...++++..|....+--+.+    -.|-.-.-...+.+.++++.+.....   +-++|.-|  ..+++..++.+
T Consensus       158 ~~~~~~~~i~~v~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~~~~a~~l~~~G~~~---i~i~Dt~G~~~P~~~~~Lv~~  234 (388)
T 2qf7_A          158 WVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHI---IAVXDMAGLLKPAAAKVLFKA  234 (388)
T ss_dssp             CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSE---EEEEETTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE---EEECCCCCCCCCHHHHHHHHH
T ss_conf             78877889999997278035788864125778888678899999999999759988---986177666561669999999


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC-----HHHHHHHHHHH-HHCCCC--
Q ss_conf             7023320138300027563897035899999999997089167014048876420-----68899999999-966993--
Q gi|254780676|r  188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGET-----RNEILQLMDDL-RTADVD--  259 (329)
Q Consensus       188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt-----~eEi~e~l~DL-r~~gvd--  259 (329)
                      =-+..+=        -=.+-...++.-.+...-.|-++|-++.  .+=|.||||-     -|+++..|... ++.|+|  
T Consensus       235 lk~~~~i--------~i~~H~Hnd~Gla~An~laAi~aGad~V--D~si~GmG~~tGn~~le~lv~~L~~~~~~~~idl~  304 (388)
T 2qf7_A          235 LREATGL--------PIHFHTHDTSGIAAATVLAAVEAGVDAV--DAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPA  304 (388)
T ss_dssp             HHHHCSS--------CEEEEECBTTSCHHHHHHHHHHTTCSEE--EEBCGGGCSBTSCCBHHHHHHHHTTSTTCCCCCHH
T ss_pred             HHHCCCC--------EEEEEECCCCCHHHHHHHHHHHCCCCEE--EECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf             9845497--------2899625653026689999997698666--51344445788887579999997557978898989


Q ss_pred             -EEECCHHCCCC-CCCCCC--------CCCCCHHHHHHHHHHHHHC
Q ss_conf             -99750222786-100780--------0023846999999999974
Q gi|254780676|r  260 -FLTMGQYLQPT-RKHHKV--------ESFVTPQDFKSYETIAYSK  295 (329)
Q Consensus       260 -ilTiGQYL~Ps-~~h~pV--------~ryv~P~eF~~~~~~a~~~  295 (329)
                       +.-|.+|+++- ....|.        -....|..|+..++...++
T Consensus       305 ~l~~i~~~~~~~~~~~~~~~~~i~G~p~~~l~p~d~~~~~~~l~~~  350 (388)
T 2qf7_A          305 WIRRISFYWEAVRNQYAAFESDLKGPPGSLLKEADLDAERKVIEKK  350 (388)
T ss_dssp             HHHHHHHHHHHHHGGGGGGCCCCCSCGGGGSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9887666799999987553145557721148855779999999975


No 64 
>>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} (A:)
Probab=52.95  E-value=15  Score=18.01  Aligned_cols=136  Identities=8%  Similarity=-0.043  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH---HHHHHHCCCHHH
Q ss_conf             35799999999707751898505445345325899999999998533586899815462344689---998741070233
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA---LEKVVSAKPDVF  192 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~a---l~~v~~A~pdV~  192 (329)
                      +.-.+..+..+.||.+++++-+.....     ...+.+..+..++..-...+|...+.+......   +..+.+...   
T Consensus        84 ~~~~~~i~~a~~lg~~~i~~~~~~~~~-----~~~l~~l~~~a~~~Gv~l~iE~~~~~~~~~~~~~~~~~~~~~~~~---  155 (264)
T 1yx1_A           84 PELEPTLRRAEACGAGWLKVSLGLLPE-----QPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQ---  155 (264)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEEEECCCS-----SCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCC-----CCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC---
T ss_conf             999999999997498989986697410-----132899999998539889998489837688889999999853689---


Q ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCC-CE-EEECCCEEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf             20138300027563897035899999999-99708-91-67014048876420688999999999669939
Q gi|254780676|r  193 NHNLETVASNYLMVRPGARYFHSLRLLQR-VKELD-PL-IFTKSGIMLGLGETRNEILQLMDDLRTADVDF  260 (329)
Q Consensus       193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~-aK~~~-~~-i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdi  260 (329)
                       -|+--.-......+.+.+....++.+.- ++... .+ .....+-.+.+|+-.-+..+.+.-|++.|.+.
T Consensus       156 -~~lg~~~D~~H~~~~~~~~~~~~~~~~~~i~~vh~~d~~~~~~~~~~~~g~G~id~~~~~~~L~~~g~~g  225 (264)
T 1yx1_A          156 -LDLAXTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGV  225 (264)
T ss_dssp             -CSEEEEEETTGGGGGTCCHHHHHHHHGGGEEEEEECEEEECTTSCEEEECCCHHHHHHHHHHHTTSCTTC
T ss_pred             -CCEEEEECCHHHHHCCCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             -8469994452254359999999998532088877403676777750378899889899999999579996


No 65 
>>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A (A:)
Probab=52.79  E-value=18  Score=17.44  Aligned_cols=26  Identities=4%  Similarity=-0.003  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             82357999999997077518985054
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVD  139 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~  139 (329)
                      ...|-...|+.++++|...++++...
T Consensus        81 s~~~~ie~a~~a~~~Gad~vlv~~P~  106 (292)
T 2ojp_A           81 ATAEAISLTQRFNDSGIVGCLTVTPY  106 (292)
T ss_dssp             SHHHHHHHHHHTTTSSCSEEEEECCC
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             06889998766886399641760787


No 66 
>>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* (A:)
Probab=52.21  E-value=18  Score=17.38  Aligned_cols=61  Identities=10%  Similarity=0.030  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             8823579999999970775--189850544534532589999999999853358689981546
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD  173 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD  173 (329)
                      .....-+|+|+.+.++.++  .-.+|+|+....-......|..+.+++.+..|++.+|....|
T Consensus       163 ~t~~~~~ria~~Af~~A~~~~rk~vt~v~Kanv~~~~~g~f~~~~~~~a~~yp~i~~~~~~vD  225 (364)
T 3flk_A          163 FTRRGVDRILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHID  225 (364)
T ss_dssp             EEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHH
T ss_pred             EEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             559999999999999999868996788753764100053788888876213785312020288


No 67 
>>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} (A:)
Probab=51.79  E-value=18  Score=17.33  Aligned_cols=62  Identities=10%  Similarity=0.159  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             88823579999999970775--189850544534532589999999999853358689981546
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLS--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD  173 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD  173 (329)
                      .....+-+|+++.+-++..+  .-.+|+|+....-...-..|.++.+++.+..|++.+|-+..|
T Consensus       140 ~~t~~~~~ri~~~Af~~A~~~~rk~Vt~v~K~ni~~~~~g~~~~~~~~~a~~yp~I~~~~~~vD  203 (333)
T 1x0l_A          140 VISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVD  203 (333)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHH
T ss_pred             CCCCCEEEHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_conf             5651114445779999999769987510673761321236898788887613464799864187


No 68 
>>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* (A:34-337)
Probab=51.54  E-value=19  Score=17.31  Aligned_cols=204  Identities=11%  Similarity=0.085  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH-H------HHHHHHHHHHHHHCCCCEEEE---ECC------------
Q ss_conf             235799999999707751898505445345325-8------999999999985335868998---154------------
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGG-A------QHFAEVISAIRESAPSTTIEV---LTP------------  172 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG-A------~hfa~~I~~Ir~~~P~~~IEv---LiP------------  172 (329)
                      .++-.+..+-+..+|++.|.+-.|-.+.++|.- +      +...+.|++||+..|+..|=+   |.|            
T Consensus        32 id~l~~~v~~~~~lGI~~v~lFgv~~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p~l~ii~Dvclc~YT~hGHcGil~~  111 (304)
T 1w5q_A           32 IDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDD  111 (304)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCC
T ss_conf             99999999999987983899874531555677664346861188999999999736169985012323245404674346


Q ss_pred             C-CCCCHHHHHHH-------HHCCCHHHH------------------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             6-23446899987-------410702332------------------013830002756389703589999999999708
Q gi|254780676|r  173 D-FLRKPHALEKV-------VSAKPDVFN------------------HNLETVASNYLMVRPGARYFHSLRLLQRVKELD  226 (329)
Q Consensus       173 D-f~G~~~al~~v-------~~A~pdV~n------------------HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~  226 (329)
                      | ---|...|+.+       .+||.|+++                  |+.+-|.=+.-.+.-.+.|--   -.|.+-...
T Consensus       112 ~g~vdNd~Tl~~l~~~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKyaS~fYG---PFRdAa~Sa  188 (304)
T 1w5q_A          112 DGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYG---PFRDAVGSA  188 (304)
T ss_dssp             TSCBCHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGH---HHHHC----
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH---HHHHHHHCH
T ss_conf             65657399999999999999972688674046541589999999996688685032156552334314---589986251


Q ss_pred             CEE--EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             916--7014048876420688999999999669939975---022278-----610078000238469999999999749
Q gi|254780676|r  227 PLI--FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYSKG  296 (329)
Q Consensus       227 ~~i--~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~~G  296 (329)
                      |..  --|+.--+--+-..|-+.++..|+.+ |.|+|-+   .-||-=     ..-.+||.-|---.||..++.-|..--
T Consensus       189 p~f~~gDrksYQmdp~n~~eAlre~~~Di~E-GAD~iMVKPal~YLDii~~~k~~~~~Pv~aY~VSGEYaMikaAa~~G~  267 (304)
T 1w5q_A          189 SNLGKGNRATYQMDPANSDEALHEVAADLAE-GADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGW  267 (304)
T ss_dssp             ------CGGGTSBCTTCSHHHHHHHHHHHHT-TCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTS
T ss_pred             HCCCCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf             2048998104652789989999999998865-887688502046779999999756998899978159999999998699


Q ss_pred             CC----------EEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf             62----------434048300103189999999999
Q gi|254780676|r  297 FL----------MVSASPLTRSSYHAGDDFLRLKNN  322 (329)
Q Consensus       297 f~----------~V~SgPlVRSSY~A~e~~~~~~~~  322 (329)
                      +.          .-.+|-=.=-+|+|.+....+.++
T Consensus       268 ~de~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L~~~  303 (304)
T 1w5q_A          268 LAESVILESLTAFKRAGADGILTYFAKQAAEQLRRG  303 (304)
T ss_dssp             SCTTHHHHHHHHHHHHTCSEEEETTHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCC
T ss_conf             626189999999986499999870499999998567


No 69 
>>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} (A:1-120,A:179-348)
Probab=51.24  E-value=19  Score=17.28  Aligned_cols=55  Identities=11%  Similarity=0.095  Sum_probs=29.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCC--------------------C--CCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             823579999999970775189850544--------------------5--345325899999999998533586899
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDR--------------------D--DLDDGGAQHFAEVISAIRESAPSTTIE  168 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~R--------------------D--DL~DgGA~hfa~~I~~Ir~~~P~~~IE  168 (329)
                      |-..-..-...++.||..+|-|+.+-.                    .  |=.=|..+.|.+-|++.++..=.+.+.
T Consensus        41 ~~~~~~~~l~~l~~lG~~~i~l~P~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~G~~~~~~~lv~~~h~~Gi~vi~D  117 (290)
T 2aaa_A           41 SWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVD  117 (290)
T ss_dssp             CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             89999985899997699889949864177656788988888675567774855599999999999864344589984


No 70 
>>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A (A:1-241)
Probab=51.24  E-value=19  Score=17.28  Aligned_cols=139  Identities=13%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             HHHHHHHHHCCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCC
Q ss_conf             999999970775189850-------54453453258999999999985335868998154623446----8999874107
Q gi|254780676|r  120 NISWAVRSMKLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAK  188 (329)
Q Consensus       120 rvA~av~~l~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~  188 (329)
                      --|..+.+.|.+.+-++|       --.||...-.-.-+...+++|.+..+..-|=+=.++--|+.    ..++.++.+|
T Consensus        29 ~sA~i~e~~G~~ai~~sg~~~a~~~~g~pd~~~~~~~e~~~~~~~i~~~~~~~PviaD~d~G~G~~~~v~~~v~~l~~aG  108 (241)
T 3fa4_A           29 LSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSG  108 (241)
T ss_dssp             HHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999998699999935899984566999866344899999999876035688657635666887899999999999819


Q ss_pred             CHHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCEEEECCCEEEEE-----EECHHHHHHHHHHHHHCC
Q ss_conf             02332-----01383000275638970358999999999-97089167014048876-----420688999999999669
Q gi|254780676|r  189 PDVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRV-KELDPLIFTKSGIMLGL-----GETRNEILQLMDDLRTAD  257 (329)
Q Consensus       189 pdV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvGL-----GEt~eEi~e~l~DLr~~g  257 (329)
                      .+-+|     +.-.++...-+.+.|....-..+..-+.+ +..++++.     +++=     .+..+|.++-.+-..++|
T Consensus       109 aagi~IED~~~~k~~~~~~~~~li~~~~~~~~i~aa~~a~~~~~~d~~-----i~ARTda~~~~~~~eai~Ra~ay~~AG  183 (241)
T 3fa4_A          109 VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIV-----VIARTDSLQTHGYEESVARLRAARDAG  183 (241)
T ss_dssp             CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCE-----EEEEECCHHHHCHHHHHHHHHHHHTTT
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-----EEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             728862356687556666655567899999999999998862599769-----996455333378999999999855458


Q ss_pred             CCEEEC
Q ss_conf             939975
Q gi|254780676|r  258 VDFLTM  263 (329)
Q Consensus       258 vdilTi  263 (329)
                      .|.+-+
T Consensus       184 Ad~i~~  189 (241)
T 3fa4_A          184 ADVGFL  189 (241)
T ss_dssp             CSEEEE
T ss_pred             CCCEEE
T ss_conf             981674


No 71 
>>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} (A:)
Probab=49.56  E-value=20  Score=17.10  Aligned_cols=26  Identities=4%  Similarity=0.065  Sum_probs=12.2

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             82357999999997077518985054
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVD  139 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~  139 (329)
                      +..+-...|+.++++|...+.+....
T Consensus        80 s~~~~i~~a~~A~~~Gad~vl~~pP~  105 (294)
T 2ehh_A           80 ATHEAVHLTAHAKEVGADGALVVVPY  105 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             79999999999997699999988887


No 72 
>>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* (A:)
Probab=48.93  E-value=7.2  Score=20.24  Aligned_cols=206  Identities=9%  Similarity=-0.007  Sum_probs=105.1

Q ss_pred             CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHH
Q ss_conf             98668999999997498236525788787675089726999866522353522344678998888235-------79999
Q gi|254780676|r   50 VSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQE-------PENIS  122 (329)
Q Consensus        50 ~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~E-------P~rvA  122 (329)
                      ..+...++++.+++++|...+-.+                      ..+.+.        +...++.+       -++..
T Consensus        45 ~~~~~~~i~~~~~~~gl~~~~~~~----------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~i   94 (290)
T 2qul_A           45 SDAKKRELKAVADDLGLTVMCCIG----------------------LKSEYD--------FASPDKSVRDAGTEYVKRLL   94 (290)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEEE----------------------ECGGGC--------TTCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCEECCC----------------------CCCCCC--------CCCCCHHHHHHHHHHHHHHH
T ss_conf             989999999999985997011214----------------------444679--------89989999999999999999


Q ss_pred             HHHHHHCCCEEEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCC-------CCEEEEECCCC---CCCHHHHHHHHH-
Q ss_conf             9999707751898505445345-----3258999999999985335-------86899815462---344689998741-
Q gi|254780676|r  123 WAVRSMKLSHVVITSVDRDDLD-----DGGAQHFAEVISAIRESAP-------STTIEVLTPDF---LRKPHALEKVVS-  186 (329)
Q Consensus       123 ~av~~l~Lk~vViTSV~RDDL~-----DgGA~hfa~~I~~Ir~~~P-------~~~IEvLiPDf---~G~~~al~~v~~-  186 (329)
                      +..+.||.+++|+.+....+..     ..-...+.+.++.+++..+       ...+|...+.+   .+..+.+..+++ 
T Consensus        95 ~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gi~~~iE~~~~~~~~~~~~~~~~~~l~~~  174 (290)
T 2qul_A           95 DDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADA  174 (290)
T ss_dssp             HHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999589568631443223578887435799999999999998766776253143113576556555878998665542


Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf             07023320138300027563897035899999999997089167014048876420688999999999669939975022
Q gi|254780676|r  187 AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY  266 (329)
Q Consensus       187 A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY  266 (329)
                      .+++.+.=    .-..+.....+.+.   .+.++.....-..+-.|-.-++-+|+-.-+.-+.+..|++.|.+..-+-.|
T Consensus       175 ~~~~~~~i----~~D~~h~~~~~~~~---~~~l~~~~~~i~~iHi~D~~~~~~G~G~id~~~i~~~L~~~g~~g~~~lE~  247 (290)
T 2qul_A          175 VDSPACKV----QLDTFHMNIEETSF---RDAILACKGKMGHFHLGEANRLPPGEGRLPWDEIFGALKEIGYDGTIVMEP  247 (290)
T ss_dssp             HCCTTEEE----EEEHHHHHHHCSCH---HHHHHHTTTTEEEEEECCTTSCCTTSSCSCHHHHHHHHHHTTCCSCEEECC
T ss_pred             CCCCCCCC----CCCCHHHHHCCCCH---HHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf             16864222----34426888739998---998764157089999624888999997619999999999849974899986


Q ss_pred             CCCC-----CCCC---CCCCCCCHHHHHHHHHHH
Q ss_conf             2786-----1007---800023846999999999
Q gi|254780676|r  267 LQPT-----RKHH---KVESFVTPQDFKSYETIA  292 (329)
Q Consensus       267 L~Ps-----~~h~---pV~ryv~P~eF~~~~~~a  292 (329)
                      -.+.     ....   .+.+-..+++......-+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (290)
T 2qul_A          248 FMRKGGSVSRAVGVWRDMSNGATDEEMDERARRS  281 (290)
T ss_dssp             CCCCSSHHHHHTTCCSCCSTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             8888737778888876402133433799999999


No 73 
>>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reaction intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} (A:26-330)
Probab=48.33  E-value=21  Score=16.97  Aligned_cols=202  Identities=16%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-------HHHHHHHHHHHHHCCCCEEEE---ECCCC----C----
Q ss_conf             82357999999997077518985054453453258-------999999999985335868998---15462----3----
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-------QHFAEVISAIRESAPSTTIEV---LTPDF----L----  175 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-------~hfa~~I~~Ir~~~P~~~IEv---LiPDf----~----  175 (329)
                      -.++-.+.++-+..+|++.+.+-.|-.+.++|.-+       +...++|+.||+..|+..|=.   |.|=-    .    
T Consensus        32 sid~l~~~~~~~~~~Gi~~v~lFgv~~~~~Kd~~gs~a~~~~g~v~rair~iK~~~p~l~vi~Dvclc~YT~hGHcGil~  111 (305)
T 1pv8_A           32 GVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLS  111 (305)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC------------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             99999999999998899999997888730358877412472229999999999648981899760457677888635212


Q ss_pred             --C---CHHHHHHH-------HHCCCHHHH------------------HCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             --4---46899987-------410702332------------------0138-300027563897035899999999997
Q gi|254780676|r  176 --R---KPHALEKV-------VSAKPDVFN------------------HNLE-TVASNYLMVRPGARYFHSLRLLQRVKE  224 (329)
Q Consensus       176 --G---~~~al~~v-------~~A~pdV~n------------------HNiE-TV~rLy~~VRp~a~Y~rSL~vL~~aK~  224 (329)
                        |   |...++.+       .+||.|+++                  ++.+ .|+=+.-.+.-.+.|--   =.|.+-.
T Consensus       112 ~~g~idND~Tl~~L~~~Als~A~AGADivAPSdMMDGrV~aIR~~Ld~~g~~~~v~ImSYsaKyaS~fYG---PFRdA~~  188 (305)
T 1pv8_A          112 ENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYG---PFRDAAK  188 (305)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGH---HHHHCC-
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---HHHHHHC
T ss_conf             5212372899999999999999718884421045678999999999977995520232166654056541---4688724


Q ss_pred             CCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCC---CCC---CCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             089167014048876420688999999999669939975---02227---861---007800023846999999999974
Q gi|254780676|r  225 LDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQ---PTR---KHHKVESFVTPQDFKSYETIAYSK  295 (329)
Q Consensus       225 ~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~---Ps~---~h~pV~ryv~P~eF~~~~~~a~~~  295 (329)
                      ..|..--|+.--+--+-..|-+.++..|+.+ |.|+|-+   .-||-   --+   .++||.-|---.||..++.-|..-
T Consensus       189 Sap~~gDrktYQmdpan~~eAlre~~~D~~E-GAD~iMVKPal~YLDIi~~~k~~~~~~Pv~aYqVSGEYaMikaAa~~G  267 (305)
T 1pv8_A          189 SSPAFGDRRCYQLPPGARGLALRAVDRDVRE-GADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAG  267 (305)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHT-TCSBEEEESCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCEEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             6766788304435997789999999863754-997788535407899999999747899879997608999999999879


Q ss_pred             CCC--E---------EECCCCCCCCHHHHHHHHHH
Q ss_conf             962--4---------34048300103189999999
Q gi|254780676|r  296 GFL--M---------VSASPLTRSSYHAGDDFLRL  319 (329)
Q Consensus       296 Gf~--~---------V~SgPlVRSSY~A~e~~~~~  319 (329)
                      -+.  .         -.+|-=.=-+|+|.+...-+
T Consensus       268 ~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L  302 (305)
T 1pv8_A          268 AFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWL  302 (305)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCSEEEETTHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf             97577799999999986299999870199999987


No 74 
>>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} (A:1-40,A:267-370)
Probab=48.09  E-value=9.3  Score=19.44  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=39.0

Q ss_pred             HHHHHCCCHHHHHCCCCCC--CCCC-CCCC-CCHHHHHHHHHHHH-HHCCCEEEECCCEEEE---EEECHHHHHHHHHHH
Q ss_conf             9874107023320138300--0275-6389-70358999999999-9708916701404887---642068899999999
Q gi|254780676|r  182 EKVVSAKPDVFNHNLETVA--SNYL-MVRP-GARYFHSLRLLQRV-KELDPLIFTKSGIMLG---LGETRNEILQLMDDL  253 (329)
Q Consensus       182 ~~v~~A~pdV~nHNiETV~--rLy~-~VRp-~a~Y~rSL~vL~~a-K~~~~~i~TKSGlMvG---LGEt~eEi~e~l~DL  253 (329)
                      ..+..+|-||+.-|+--.+  ..+. -++. ...|.+..+.+..+ ++.+-.+..=.|.+.-   +...+++  .+..-|
T Consensus        22 ~~~~~~g~~~~~~~~g~~~aL~~~~~~l~~~~~~~~~rr~~l~~~L~~~gi~~~~p~Gg~flw~~~~~~~~~--~~~~ll   99 (144)
T 2z61_A           22 QKLESEGKKVIHLEIGEPDFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGEDGRE--FAYKLL   99 (144)
T ss_dssp             HHHHHTTCCCEECCCCSCSGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSSCHHH--HHHHHH
T ss_pred             HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCCHHH--HHHHHH
T ss_conf             999966997489999889933331357899999987510245667886594762788038999868999999--999999


Q ss_pred             HHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9669939975022278610078000238469999
Q gi|254780676|r  254 RTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKS  287 (329)
Q Consensus       254 r~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~  287 (329)
                      .+.||-++.=.-|-.+...++-+.=-.+++++++
T Consensus       100 ~e~gV~v~PGs~F~~~~~~~iRl~fa~~~e~i~e  133 (144)
T 2z61_A          100 KEKFVALTPGIGFGSKGKNYIRISYANSYENIKE  133 (144)
T ss_dssp             HHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHH
T ss_pred             HHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHH
T ss_conf             8699999805331889999899997298999999


No 75 
>>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} (A:)
Probab=48.07  E-value=11  Score=18.95  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             CCCCCCHHHHHHH-------HHHHHHHCCCEEEEEC-------------C-CCCCCCCCHH-----HHHHHHHHHHHHHC
Q ss_conf             9988882357999-------9999970775189850-------------5-4453453258-----99999999998533
Q gi|254780676|r  109 KPQPLDPQEPENI-------SWAVRSMKLSHVVITS-------------V-DRDDLDDGGA-----QHFAEVISAIRESA  162 (329)
Q Consensus       109 ~P~~~D~~EP~rv-------A~av~~l~Lk~vViTS-------------V-~RDDL~DgGA-----~hfa~~I~~Ir~~~  162 (329)
                      .|.++..+|-..+       |+-.++.|..-|-|-.             . .|+|-- ||+     ..-.++|++||+..
T Consensus       147 ~p~~mt~~~I~~i~~~f~~AA~~A~~AGfDgVeih~ahG~Ll~qFlsp~~N~RtDeY-GGs~enR~Rf~~Eii~air~a~  225 (361)
T 3gka_A          147 TPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAY-GGSIENRARLLLEVVDAAIDVW  225 (361)
T ss_dssp             CCEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTT-SSSHHHHSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHC
T ss_conf             753345656989987556888889862954022311332123302220236644557-8756553467788888777633


Q ss_pred             CCCEEEE--ECCCCC----C---CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf             5868998--154623----4---468999874107023320138300027563897035899999999997089167014
Q gi|254780676|r  163 PSTTIEV--LTPDFL----R---KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKS  233 (329)
Q Consensus       163 P~~~IEv--LiPDf~----G---~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKS  233 (329)
                      ++-.|-+  -..|+.    .   ..+.+..+.+++.|.+.-    ...-++.-.     ..   .....|+...     -
T Consensus       226 gd~~v~~R~~~~~~~~~g~~~~e~~~~a~~l~~~g~d~i~~----~~~~~~~~~-----~~---~~~~~k~~~~-----~  288 (361)
T 3gka_A          226 SAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAF----LFARESFGG-----DA---IGQQLKAAFG-----G  288 (361)
T ss_dssp             CGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSE----EEEECCCST-----TC---CHHHHHHHHC-----S
T ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE----EEEECCCCC-----CC---CHHHHHHCCC-----C
T ss_conf             66634554034655234565662999999999857687208----987556676-----53---0011100259-----7


Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             0488764206889999999996699399750222
Q gi|254780676|r  234 GIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       234 GlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      -+++|-.=+.++..   ..|.+-++|++.+|-.+
T Consensus       289 ~i~~g~~~~~~~a~---~~l~~g~~D~v~~~R~~  319 (361)
T 3gka_A          289 PFIVNENFTLDSAQ---AALDAGQADAVAWGKLF  319 (361)
T ss_dssp             CEEEESSCCHHHHH---HHHHTTSCSEEEESHHH
T ss_pred             CEEEECCCCHHHHH---HHHHCCCCCEEHHHHHH
T ss_conf             78998998999999---99987997560466999


No 76 
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300)
Probab=47.59  E-value=21  Score=16.89  Aligned_cols=130  Identities=13%  Similarity=0.160  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC--C----C------------------HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             8235799999999707751898505445345--3----2------------------58999999999985335868998
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDRDDLD--D----G------------------GAQHFAEVISAIRESAPSTTIEV  169 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~--D----g------------------GA~hfa~~I~~Ir~~~P~~~IEv  169 (329)
                      |.+--.++++++++.|.+.|-.-.-+-|.+.  +    .                  +...|....+..++    ..|.+
T Consensus        42 ~~~~a~~~i~~a~~aGadavKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~----~Gi~~  117 (300)
T 1vli_A           42 KLDQAFALIDAAAEAGADAVKFQXFQADRXYQKDPGLYKTAAGKDVSIFSLVQSXEXPAEWILPLLDYCRE----KQVIF  117 (300)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHH----TTCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC----CCCEE
T ss_conf             29999999999998098999911506787078863424567788864310222102103455555444321----34301


Q ss_pred             ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH
Q ss_conf             15462344689998741070233201383000275638970358999999999970891670140488764206889999
Q gi|254780676|r  170 LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL  249 (329)
Q Consensus       170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~  249 (329)
                      ++.=|  +.++++.+.+.++++|-            |-  +.=-..+.+|+.+.+.+.-+.-++|+     =|.+|+..+
T Consensus       118 ~st~f--d~~~vd~l~~~~v~~~K------------I~--S~~~~n~~LL~~~A~tgkPvilstG~-----~t~~ei~~A  176 (300)
T 1vli_A          118 LSTVC--DEGSADLLQSTSPSAFK------------IA--SYEINHLPLLKYVARLNRPXIFSTAG-----AEISDVHEA  176 (300)
T ss_dssp             ECBCC--SHHHHHHHHTTCCSCEE------------EC--GGGTTCHHHHHHHHTTCSCEEEECTT-----CCHHHHHHH
T ss_pred             EECCC--CHHHHHHHCCCCCCCEE------------CC--CCCCCCHHHHHHHHHCCCCCEEECCH-----HHHHHHHHH
T ss_conf             10122--02444310121221112------------03--32334469999998608961021103-----345667889


Q ss_pred             HHHHHHCCCCEEECCHHCC
Q ss_conf             9999966993997502227
Q gi|254780676|r  250 MDDLRTADVDFLTMGQYLQ  268 (329)
Q Consensus       250 l~DLr~~gvdilTiGQYL~  268 (329)
                      +.-+++.|.+-|.|-+=-.
T Consensus       177 v~~~~~~Gn~~l~Llhc~s  195 (300)
T 1vli_A          177 WRTIRAEGNNQIAIXHCVA  195 (300)
T ss_dssp             HHHHHTTTCCCEEEEEECS
T ss_pred             HHHHHHHCCCCEEEEEECC
T ss_conf             9888763156579986025


No 77 
>>2h8z_A Xenobiotic reductase A; beta-alpha barrel, oxidoreductase; HET: FMN 8CM; 1.42A {Pseudomonas putida} PDB: 2h90_A* 2h8x_A* (A:1-104,A:149-359)
Probab=47.16  E-value=22  Score=16.85  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECC----CCC----CCHHHHHHHHHCCCHHHHHCCCC------CCCCCCCCCC--
Q ss_conf             3258999999999985335868998154----623----44689998741070233201383------0002756389--
Q gi|254780676|r  145 DGGAQHFAEVISAIRESAPSTTIEVLTP----DFL----RKPHALEKVVSAKPDVFNHNLET------VASNYLMVRP--  208 (329)
Q Consensus       145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiP----Df~----G~~~al~~v~~A~pdV~nHNiET------V~rLy~~VRp--  208 (329)
                      |.-+..|.+++.+|++..--+-+.+--+    ++.    .-.++.+.+.++|.|.+.=|.--      --.=+..+|.  
T Consensus        75 ~~~~~~~~~~~~~vh~~g~~~~~Ql~h~Gr~~eI~~~~~~f~~aA~~a~~aGfDgIein~a~gyl~~qf~cP~~n~r~~~  154 (315)
T 2h8z_A           75 DAHAQAFVPVVQAIKAAGSVPGIQIAHAGRLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDA  154 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEECCGGHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCST
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23415788999998762240021012077699999999999999889998296702313455520024430247655554


Q ss_pred             -CCHHHHH----HHHHHHHHHC-CCEEEECCCEEEE-----EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCC
Q ss_conf             -7035899----9999999970-8916701404887-----642068899999999966993997502227861007800
Q gi|254780676|r  209 -GARYFHS----LRLLQRVKEL-DPLIFTKSGIMLG-----LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVE  277 (329)
Q Consensus       209 -~a~Y~rS----L~vL~~aK~~-~~~i~TKSGlMvG-----LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~  277 (329)
                       +++..+.    +++++.+++. ++.+..|..+-+.     -+.+.|+..+.+.-|.+.|+|.|++..-..-....    
T Consensus       155 ~G~~l~~r~~~~~eii~~ir~~~g~~~~v~~R~~~~d~~~~~~~~~e~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----  230 (315)
T 2h8z_A          155 YGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTN----  230 (315)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCCSSCCC----
T ss_pred             CCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC----
T ss_conf             5677432114566666632430321255543467322355567744678888899986597547753013116744----


Q ss_pred             CCCCHH-HHHHHHHHHHHCCCCEEECCCCCCCCHHH
Q ss_conf             023846-99999999997496243404830010318
Q gi|254780676|r  278 SFVTPQ-DFKSYETIAYSKGFLMVSASPLTRSSYHA  312 (329)
Q Consensus       278 ryv~P~-eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A  312 (329)
                      .+..+. ..+..+.+....+...+..|= ++|--.|
T Consensus       231 ~~~~~~~~~~~~~~ir~~~~ipvi~~Gg-I~s~e~a  265 (315)
T 2h8z_A          231 IPWGPAFMGPIAERVRREAKLPVTSAWG-FGTPQLA  265 (315)
T ss_dssp             CCCCTTTTHHHHHHHHHHHTCCEEECSS-TTSHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCHHHH
T ss_conf             3347431068999999874960899768-6999999


No 78 
>>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* (A:)
Probab=46.85  E-value=13  Score=18.38  Aligned_cols=57  Identities=11%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             CCCCCHHHHH----HHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHHHCCCC
Q ss_conf             3453258999----999999985335868998154623-44689998741070233201383
Q gi|254780676|r  142 DLDDGGAQHF----AEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFNHNLET  198 (329)
Q Consensus       142 DL~DgGA~hf----a~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~nHNiET  198 (329)
                      |.-|+|...+    .+.|+.+|+.++.+.+-.=+-|+- .....++...++|.|.+.=|.+.
T Consensus        31 d~~k~g~~~~~~~G~~~i~~l~~~~~~i~~d~k~~di~~t~~~~~~~~~~~gaD~vtvh~~~   92 (246)
T 2yyu_A           31 LFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAG   92 (246)
T ss_dssp             CEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred             EEEEECHHHHHHHCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             19998989985109899999986288565211003657689999987622675078872355


No 79 
>>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351)
Probab=46.73  E-value=20  Score=17.10  Aligned_cols=215  Identities=13%  Similarity=-0.022  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             89999999974982365257887876750897269998665223535223446789988882357999999997077518
Q gi|254780676|r   54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHV  133 (329)
Q Consensus        54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~v  133 (329)
                      -.+.-+++++.+...|+--|+|=+-.-.|...+.             .++.+.+    +...|=-..+++|+++-|||..
T Consensus        80 ~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~~-------------~~~~~~~----~~~rDiv~el~~A~rk~Glk~g  142 (351)
T 2wvv_A           80 AKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-------------KYTVANT----PYKRDILGELVKAYNDEGIDVH  142 (351)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTC-------------SCBGGGS----TTCSCHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC-------------CCCCCCC----CCCCCHHHHHHHHHHHCCCCCC
T ss_conf             9999999998499679976662378534478999-------------9855467----8876648999999986598652


Q ss_pred             EEECCCCCCCCCCH-----------HHHH-HHHHHHHHHHCCCC-EEEEECCCCCCC----------HHHHHHHHHCCCH
Q ss_conf             98505445345325-----------8999-99999998533586-899815462344----------6899987410702
Q gi|254780676|r  134 VITSVDRDDLDDGG-----------AQHF-AEVISAIRESAPST-TIEVLTPDFLRK----------PHALEKVVSAKPD  190 (329)
Q Consensus       134 ViTSV~RDDL~DgG-----------A~hf-a~~I~~Ir~~~P~~-~IEvLiPDf~G~----------~~al~~v~~A~pd  190 (329)
                      +=.|.--=--||.+           -.-| .-...+|++..-.- .|..+--|....          ....+.+..-.|+
T Consensus       143 ~Y~S~~dw~~p~~~~~~~~~~~~~~~~~y~~~~~~ql~El~~~Yg~id~~W~Dg~~~~~~~~~~~~~~~~~~~i~~~~p~  222 (351)
T 2wvv_A          143 FYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPG  222 (351)
T ss_dssp             EEEESCCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCSHHHHHTHHHHHHHHHHHHHHSTT
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             89834322475556676776666321666655577777886438950301126766766553114567899988976898


Q ss_pred             HHHHCCCCC-CCCC----------CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCE-EEEEE----E------CHHHHHH
Q ss_conf             332013830-0027----------56389703589999999999708916701404-88764----2------0688999
Q gi|254780676|r  191 VFNHNLETV-ASNY----------LMVRPGARYFHSLRLLQRVKELDPLIFTKSGI-MLGLG----E------TRNEILQ  248 (329)
Q Consensus       191 V~nHNiETV-~rLy----------~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGl-MvGLG----E------t~eEi~e  248 (329)
                      +...|-... ++-.          ....+..++.. .+.....+.....--+...+ +-|=|    +      |.+||+.
T Consensus       223 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~we~~~ti~~~~Wgy~~~~~~~~~ks~~~li~  301 (351)
T 2wvv_A          223 VAINSRLRADDKGKRHFDSNGRLMGDYESGYERRL-PDPVKDLKVTQWDWEACMTIPENQWGYHKDWSLSYVKTPIEVID  301 (351)
T ss_dssp             CEEBGGGCBCTTSCBSBCTTSCBCSSBBCCCBSCC-CCTTTCGGGGGSCBEEEECSBSSCCSCCSCGGGSCBCCHHHHHH
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             69940021156674234677764577777644456-66566676678886023462689754476888334689999999


Q ss_pred             HHHHHHHCCCCE-EECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999999669939-97502227861007800023846999999999974
Q gi|254780676|r  249 LMDDLRTADVDF-LTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSK  295 (329)
Q Consensus       249 ~l~DLr~~gvdi-lTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~  295 (329)
                      .+-+....|..+ |.||    |.+.-     =+++.+-+.++++|.-|
T Consensus       302 ~l~~~v~~~gnlLLNvg----P~~dG-----~i~~~~~~~L~~~g~wl  340 (351)
T 2wvv_A          302 RIVHAVSMGGNMVVNFG----PQADG-----DFRPEEKAMATAIGKWM  340 (351)
T ss_dssp             HHHHHHHTTCEEEEEEC----CCTTS-----SCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEECC----CCCCC-----CCCHHHHHHHHHHHHHH
T ss_conf             99997368945999628----78688-----68889999999999999


No 80 
>>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} (A:)
Probab=46.19  E-value=22  Score=16.75  Aligned_cols=20  Identities=30%  Similarity=0.409  Sum_probs=10.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCE
Q ss_conf             38469999999999749624
Q gi|254780676|r  280 VTPQDFKSYETIAYSKGFLM  299 (329)
Q Consensus       280 v~P~eF~~~~~~a~~~Gf~~  299 (329)
                      -+|++|.++-..-.+.|...
T Consensus       276 ~~p~~~a~~~~~~~~~Gv~i  295 (406)
T 1lt8_A          276 ATRWDIQKYAREAYNLGVRY  295 (406)
T ss_dssp             CCHHHHHHHHHHHHHHTEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCE
T ss_conf             58899999999999809998


No 81 
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375)
Probab=45.99  E-value=22  Score=16.73  Aligned_cols=119  Identities=14%  Similarity=0.030  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHH
Q ss_conf             2357999999997077518985054453453258999999999985335868998154623-446899987410702332
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFN  193 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~n  193 (329)
                      ..+-.-+|+.+.+.|.+-+.|-..|    -+.|.+.....-+.+++..-.+.-++..|--. --...+..+.+++||++-
T Consensus         3 ~~qa~~~a~~l~~~g~k~Vaii~~D----~ayG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~tDfss~l~~i~~s~advVi   78 (191)
T 3i09_A            3 XALAKGTGSAVVKQGGKTWFFLTAD----YAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILG   78 (191)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCC----CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEE
T ss_conf             9999999999875137789995168----718789999999988744964888896067565413799887625998899


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHH
Q ss_conf             0138300027563897035899999999997089167014048876420688999999999
Q gi|254780676|r  194 HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLR  254 (329)
Q Consensus       194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr  254 (329)
                      .              .........+++.+++.|.   +...++.+.+=+.+++.....+..
T Consensus        79 l--------------~~~g~d~~~~ikqa~e~Gl---~~~~~~~~~~~~~~~v~~~g~~aa  122 (191)
T 3i09_A           79 L--------------ANAGGDTVNAIKAAKEFGI---TKTXKLAALLXFINDVHALGLETT  122 (191)
T ss_dssp             E--------------ECCHHHHHHHHHHHHHTTG---GGTCEEEESSCCHHHHHHHCHHHH
T ss_pred             E--------------ECCCCHHHHHHHHHHHCCC---CCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             9--------------0577068999999998098---876599970365588886413531


No 82 
>>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:1-115,A:211-383)
Probab=45.73  E-value=23  Score=16.70  Aligned_cols=38  Identities=16%  Similarity=0.310  Sum_probs=19.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCC
Q ss_conf             5445345325899999999998533---58689981546234
Q gi|254780676|r  138 VDRDDLDDGGAQHFAEVISAIRESA---PSTTIEVLTPDFLR  176 (329)
Q Consensus       138 V~RDDL~DgGA~hfa~~I~~Ir~~~---P~~~IEvLiPDf~G  176 (329)
                      |.|=++..|...-+.++|+.||+.+   .+..|-++. |.+|
T Consensus        74 v~R~N~sh~~~~~~~~~i~~ir~~~~~~~~~~i~i~~-D~~G  114 (288)
T 3khd_A           74 ICRFNFSHGSHEDHKEMFNNVLKAQELRPNCLLGMLL-DTKG  114 (288)
T ss_dssp             EEEEETTSSCHHHHHHHHHHHHHHHHHCSSCCCEEEE-ECCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCC
T ss_conf             9999899999999999999999998745899348999-7889


No 83 
>>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} (A:1-64)
Probab=45.73  E-value=5.7  Score=20.92  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHHHHH---CC-------CCEEECCCCCCCCHHHHHHHHH
Q ss_conf             0002384699999999997---49-------6243404830010318999999
Q gi|254780676|r  276 VESFVTPQDFKSYETIAYS---KG-------FLMVSASPLTRSSYHAGDDFLR  318 (329)
Q Consensus       276 V~ryv~P~eF~~~~~~a~~---~G-------f~~V~SgPlVRSSY~A~e~~~~  318 (329)
                      +..+++|+++..+++.=.+   .|       |.+..+  ||||+|.++...--
T Consensus         5 l~~~v~~eeL~~le~qY~~E~~~g~vs~qTqFnYAw~--LIkS~~~~d~~~Gi   55 (64)
T 1pc2_A            5 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC--LVRSKYNDDIRKGI   55 (64)
T ss_dssp             CSCSCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--HHTCSSHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--HHHCCCHHHHHHHH
T ss_conf             8724589999999999999871099999999999999--98758777899999


No 84 
>>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287)
Probab=44.62  E-value=24  Score=16.58  Aligned_cols=24  Identities=13%  Similarity=0.249  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             99999999853358689981546234
Q gi|254780676|r  151 FAEVISAIRESAPSTTIEVLTPDFLR  176 (329)
Q Consensus       151 fa~~I~~Ir~~~P~~~IEvLiPDf~G  176 (329)
                      ..++|+..|+.  +..|-+|+.|...
T Consensus        46 a~e~I~~Lr~~--Gi~v~ilTGD~~~   69 (165)
T 3a1c_A           46 AKPAVQELKRM--GIKVGMITGDNWR   69 (165)
T ss_dssp             HHHHHHHHHHT--TCEEEEECSSCHH
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCHH
T ss_conf             99999999876--9978997589779


No 85 
>>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349)
Probab=44.19  E-value=24  Score=16.54  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHCC--CHHHHHCCCCCCCC---CCCCCCC
Q ss_conf             50544534532589999999999853358689981-546234468999874107--02332013830002---7563897
Q gi|254780676|r  136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVL-TPDFLRKPHALEKVVSAK--PDVFNHNLETVASN---YLMVRPG  209 (329)
Q Consensus       136 TSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvL-iPDf~G~~~al~~v~~A~--pdV~nHNiETV~rL---y~~VRp~  209 (329)
                      +...-++-.......|.+.|.+..+.+|+++|++- +|+...-.+.+...+.++  ||||-=+-..+...   -..+.|-
T Consensus        44 ~~~~~~~~~~~~~~~~~~~i~~f~ke~p~IkV~~~~~~~~~~~~~kl~~~~asG~~PDIi~~~~~~~~~~~~~~G~l~dL  123 (185)
T 2w7y_A           44 HGYHHSEDEWPVAKTXRDLYDKFAEEHKDSGVEFKPTPVNGDLKDIXNNKVASGEFPDVIDLAGNAVSLAAIEQKLVLDL  123 (185)
T ss_dssp             ESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEEEECSSCHHHHHHHHHTTTCCCSEEECTTCCCCHHHHHTTCBCCC
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCH
T ss_conf             94368776316899999999999998869379999815806999999999977999829996873899999978984424


Q ss_pred             CHHHHH----HHHHHHHHHCCCEE
Q ss_conf             035899----99999999708916
Q gi|254780676|r  210 ARYFHS----LRLLQRVKELDPLI  229 (329)
Q Consensus       210 a~Y~rS----L~vL~~aK~~~~~i  229 (329)
                      .+|-..    =.++...+-.|..|
T Consensus       124 ~d~id~d~~~~~~~~~~~~d~~~~  147 (185)
T 2w7y_A          124 KPYIDSNKLEKNVGLNYKQNGGGI  147 (185)
T ss_dssp             HHHHHHTTCHHHHTTHHHHTCCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             765433233343588997356415


No 86 
>>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} (A:1-87,A:148-337)
Probab=43.74  E-value=24  Score=16.49  Aligned_cols=115  Identities=13%  Similarity=0.204  Sum_probs=59.4

Q ss_pred             CCCCEEEEECCCCCCCH-HHHHHHHHCCCHH------HHHCCCC------CCCCCCCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf             35868998154623446-8999874107023------3201383------0002756389-7035899999999997089
Q gi|254780676|r  162 APSTTIEVLTPDFLRKP-HALEKVVSAKPDV------FNHNLET------VASNYLMVRP-GARYFHSLRLLQRVKELDP  227 (329)
Q Consensus       162 ~P~~~IEvLiPDf~G~~-~al~~v~~A~pdV------~nHNiET------V~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~  227 (329)
                      .|++.+|.-.-||+|-. +.|+-+.+.|.+.      +.+.-..      +..+| .|-| -.+-+.=.++++.+++.|-
T Consensus         1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~i~~~p~~~~~~~~~~~gy~~~~~~-~~~~~~g~~~~~~~l~~~~h~~gi   79 (277)
T 1g94_A            1 TPTTFVHLFEWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGV   79 (277)
T ss_dssp             CCCCEEEETTCCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC-EECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9876998777847999999999999809988995988458999988678878787-658889999999999999998899


Q ss_pred             EEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             167014048876420688999999999669939975022278610078000238469999999
Q gi|254780676|r  228 LIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYET  290 (329)
Q Consensus       228 ~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~  290 (329)
                      ++.  .-+..-=-+..+++++.++.+.+.|||=+-+           .+.+++.++.+..+..
T Consensus        80 ~v~--~D~v~~Np~Vr~~l~~~~r~Wld~GVDGfR~-----------Daa~~~~~~~~~~~~~  129 (277)
T 1g94_A           80 DIY--VDTLIASNYVQNTIAAYINDLQAIGVKGFRF-----------DASKHVAASDIQSLMA  129 (277)
T ss_dssp             EEE--EEEECTSHHHHHHHHHHHHHHHHHTCCEEEE-----------ETGGGSCHHHHHHHHH
T ss_pred             EEE--EEECCCCHHHHHHHHHHHHHHHHHCCCEEEC-----------CCCCCCCHHHHHHHHH
T ss_conf             999--9981599899999999999999829982521-----------4401179999999997


No 87 
>>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:1-88,D:187-359)
Probab=43.61  E-value=24  Score=16.48  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCC--------HHHHHHHHHCCCHHHH
Q ss_conf             54453453258999999999985335868998-15462344--------6899987410702332
Q gi|254780676|r  138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLRK--------PHALEKVVSAKPDVFN  193 (329)
Q Consensus       138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~--------~~al~~v~~A~pdV~n  193 (329)
                      |.|=++..|...-+.++|+.||+........+ +.-|.+|-        .+.+...+..|.|-+.
T Consensus        48 ~~r~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~i~~d~~Gplp~it~~D~~~i~~a~~~G~dgi~  112 (261)
T 3hqn_D           48 VARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPLPAVSAKDRVDLQFGVEQGVDMIF  112 (261)
T ss_dssp             EEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             99998899999999999999999999859986999979998899998999999999865999999


No 88 
>>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:)
Probab=43.30  E-value=25  Score=16.45  Aligned_cols=25  Identities=8%  Similarity=0.108  Sum_probs=11.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             8235799999999707751898505
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSV  138 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV  138 (329)
                      +..|-...|+.++.+|..-++|...
T Consensus        81 ~~~~~i~~a~~a~~~Ga~~vli~~P  105 (291)
T 3bi8_A           81 NTAASIAMSKWAESIGVDGLLVITP  105 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             7899999999999718997999498


No 89 
>>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:)
Probab=42.85  E-value=5.9  Score=20.81  Aligned_cols=68  Identities=19%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             EEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHCCC----CEEECCCCCCC
Q ss_conf             88764206889999999996699399750222786100780---002384699999999997496----24340483001
Q gi|254780676|r  236 MLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV---ESFVTPQDFKSYETIAYSKGF----LMVSASPLTRS  308 (329)
Q Consensus       236 MvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV---~ryv~P~eF~~~~~~a~~~Gf----~~V~SgPlVRS  308 (329)
                      +.=++++.+++-++..+|+..+     ||.||.|+...+.|   ..|++|.+|..-.--+.-.|-    +++.-=|++||
T Consensus        76 ~w~~~~~~~~lq~~~~~l~~t~-----lg~~l~~~~s~~svt~~s~Y~~~~e~~~~~~~~~l~~~~p~~~y~~~YPm~Ks  150 (249)
T 1vdh_A           76 FLNLRPGLDPLLEAEARLSRSA-----FARYLGRSYSFYSVVELGSQEKPLDPESPYVKPRLTPRVPKSGYVCFYPMNKR  150 (249)
T ss_dssp             EEEEESSHHHHHHHHHHHHHSS-----GGGGEEEEEEEEEEEEEEESSSCCCTTCTTTGGGGSCCCCSSSEEEEEEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHCC-----CCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEECC
T ss_conf             9987899999999999998523-----42324444235764003344688654433225551787889877999853205


No 90 
>>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217)
Probab=42.30  E-value=25  Score=16.34  Aligned_cols=105  Identities=13%  Similarity=0.111  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHH
Q ss_conf             23446899987410702332013830002756389703589999999999708916701404887642068899999999
Q gi|254780676|r  174 FLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDL  253 (329)
Q Consensus       174 f~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DL  253 (329)
                      +.+....++.++++|.+-+-=+--|-|-.+      -+-+...++++.+.+...+   +.-++-+.+.+-++.++..+..
T Consensus        32 ~~~~~~~i~~~~~~Gv~gi~v~G~tGE~~~------Lt~~Er~~~i~~~~~~~~~---~~~i~g~~~~~t~~~i~~a~~a  102 (217)
T 3e96_A           32 WHHYKETVDRIVDNGIDVIVPCGNTSEFYA------LSLEEAKEEVRRTVEYVHG---RALVVAGIGYATSTAIELGNAA  102 (217)
T ss_dssp             HHHHHHHHHHHHTTTCCEECTTSGGGTGGG------SCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECEECCCHHH------CCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHH
T ss_conf             999999999999769999996845666213------7999999999999998299---7327414433124677777777


Q ss_pred             HHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             96699399750--222786100780002384699999999997496
Q gi|254780676|r  254 RTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETIAYSKGF  297 (329)
Q Consensus       254 r~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf  297 (329)
                      .++|+|-+-+.  .|..|+..          +-++.|++++...+.
T Consensus       103 ~~~Ga~~~lv~~P~~~~~~~~----------~i~~~~~~i~~~~~~  138 (217)
T 3e96_A          103 KAAGADAVMIHMPIHPYVTAG----------GVYAYFRDIIEALDF  138 (217)
T ss_dssp             HHHTCSEEEECCCCCSCCCHH----------HHHHHHHHHHHHHTS
T ss_pred             HHCCCCCCCCCCCCCCCCCHH----------HHHHHHHHHHHHHCC
T ss_conf             641443123568742321067----------778899988765224


No 91 
>>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} (A:)
Probab=42.26  E-value=24  Score=16.46  Aligned_cols=179  Identities=8%  Similarity=-0.058  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHC
Q ss_conf             35799999999707751898505445345325899999999998533586899815462344689998741070233201
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHN  195 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHN  195 (329)
                      ..|..+++++++.|+..++||--+.-+-.+--..+...   .-.+..++..|.++...-...... ...+........++
T Consensus        18 ~~~e~~~~~A~~~G~~~i~iTDH~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~G~e~~~~~~-~~~~~~~~~~~~~~   93 (245)
T 1m65_A           18 STLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFIN---MRIWPRVVDGVGILRGIEANIKNV-DGEIDCSGKMFDSL   93 (245)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEEECTTSTTCCCTHHHHG---GGGSCSEETTEEEEEEEEEEBCST-TCCBSCCHHHHHHC
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHHHHHCCEEEEECCCCCCCCC-HHHHHHHHHHCCCC
T ss_conf             87999999999879999999389876450268999999---888899747848985564443543-03455566540455


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC
Q ss_conf             3830002756389703589999999999708-916701404887642068899999999966993997502227861007
Q gi|254780676|r  196 LETVASNYLMVRPGARYFHSLRLLQRVKELD-PLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHH  274 (329)
Q Consensus       196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~-~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~  274 (329)
                      ....-.+....+....+.+-...+......+ ..+................  .-.........++...+.+-....   
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---  168 (245)
T 1m65_A           94 DLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAV--AEAAAKHQVALEINNSSFLHSRKG---  168 (245)
T ss_dssp             SEEEEECCTTTSCCCCHHHHHHHHHHHHHTSCCSEECCTTCTTSCCCHHHH--HHHHHHHTCEEEEETTC----------
T ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH--HHHHHHHCCEEEEECCCCCCCCCC---
T ss_conf             517886401224665499999999999977998685253520134557999--999997285467622433456677---


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf             80002384699999999997496243404830010
Q gi|254780676|r  275 KVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSS  309 (329)
Q Consensus       275 pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSS  309 (329)
                            ......++.+.+.+.|...|.+.|.-...
T Consensus       169 ------~~~~~~~~~~~~~~~g~~~v~~sD~H~~~  197 (245)
T 1m65_A          169 ------SEDNCREVAAAVRDAGGWVALGSDSHTAF  197 (245)
T ss_dssp             ---------CHHHHHHHHHHHTCCEEEECCBSSGG
T ss_pred             ------CCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             ------76569999999998699599989989955


No 92 
>>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:1-71,A:168-339)
Probab=42.16  E-value=26  Score=16.33  Aligned_cols=148  Identities=22%  Similarity=0.243  Sum_probs=86.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCCC--------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf             05445345325899999999998533586--89981546234--------468999874107023320138300027563
Q gi|254780676|r  137 SVDRDDLDDGGAQHFAEVISAIRESAPST--TIEVLTPDFLR--------KPHALEKVVSAKPDVFNHNLETVASNYLMV  206 (329)
Q Consensus       137 SV~RDDL~DgGA~hfa~~I~~Ir~~~P~~--~IEvLiPDf~G--------~~~al~~v~~A~pdV~nHNiETV~rLy~~V  206 (329)
                      .|.|=++..|...-+.++|+.||+.....  .|-++ -|.+|        +.+.++.-++.+.|.+..         +-|
T Consensus        30 ~v~RlN~SHg~~e~h~~~i~~iR~~~~~~~~~i~Il-~Dl~GPlp~LTekD~~di~~a~~~~vD~ial---------SfV   99 (243)
T 2e28_A           30 NVARLNFSHGDHEEHGRRIANIREAAKRTGRTVAIL-LDTKGPLPGITEKDRADILFGIRQGIDFIAA---------SFV   99 (243)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHHHHHTTCCCEEE-EECCCCCCSCCHHHHHHHHHHHHHTCSEEEE---------SSC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCCCCCHHHHHHHHHHHHCCCCEEEE---------CCC
T ss_conf             999997999999999999999999999719980799-9689986222156799988776508886751---------354


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEC-----------------CCEEEEEEEC-----HHHH----HHHHHHHHHCCCCE
Q ss_conf             89703589999999999708916701-----------------4048876420-----6889----99999999669939
Q gi|254780676|r  207 RPGARYFHSLRLLQRVKELDPLIFTK-----------------SGIMLGLGET-----RNEI----LQLMDDLRTADVDF  260 (329)
Q Consensus       207 Rp~a~Y~rSL~vL~~aK~~~~~i~TK-----------------SGlMvGLGEt-----~eEi----~e~l~DLr~~gvdi  260 (329)
                      |...+-..=-++|+.....++.+..|                 -|+|++=|.=     .+++    ...+.--+..|.-+
T Consensus       100 r~a~di~~vr~~l~~~~~~~~~IiaKIE~~~ai~nl~eIi~~sDgimIaRGDLgve~~~e~v~~~Qk~ii~~c~~~~kpv  179 (243)
T 2e28_A          100 RRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGLMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPV  179 (243)
T ss_dssp             CSHHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             87335788987655411445561023404566651477876464799965651210698899999999999988529839


Q ss_pred             EECCHHCCC-CCCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEEC
Q ss_conf             975022278-61007800023846999999999--9749624340
Q gi|254780676|r  261 LTMGQYLQP-TRKHHKVESFVTPQDFKSYETIA--YSKGFLMVSA  302 (329)
Q Consensus       261 lTiGQYL~P-s~~h~pV~ryv~P~eF~~~~~~a--~~~Gf~~V~S  302 (329)
                      ++-+|+|-- .....|        ...+.-.+|  ..-|+..+.=
T Consensus       180 I~ATq~LeSM~~~~~P--------TRAEv~Dvanav~dGaD~imL  216 (243)
T 2e28_A          180 ITATQMLDSMQRNPRP--------TRAEASDVANAIFDGTDAVML  216 (243)
T ss_dssp             EEESSSSGGGGTCSSC--------CHHHHHHHHHHHHHTCSEEEE
T ss_pred             EEEHHHHHHHHHCCCC--------CCHHHHHHHHHHHHCCCEEEE
T ss_conf             9858976667508999--------744468999999727825887


No 93 
>>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236)
Probab=42.09  E-value=26  Score=16.32  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=12.9

Q ss_pred             EEEEEEE-CHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             4887642-0688999999999669939975
Q gi|254780676|r  235 IMLGLGE-TRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       235 lMvGLGE-t~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +|+|.|. +-+|.++..+...++|+|.+-+
T Consensus        72 ii~gv~~~s~~~~i~~a~~a~~~G~d~v~v  101 (236)
T 2vc6_A           72 VIAGAGSNSTAEAIAFVRHAQNAGADGVLI  101 (236)
T ss_dssp             BEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             897468740689999999999769999998


No 94 
>>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} (A:)
Probab=41.97  E-value=2.2  Score=23.89  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             88235799999999707751898505445345325899999999998533586899815462344689998741070233
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF  192 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~  192 (329)
                      .+...|..+|+++...|..+++++.-   .-...|.......++.+....   .+.++..+.....+....+.+++.+.+
T Consensus        30 ~~~~~~~~~a~~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~i  103 (253)
T 1h5y_A           30 REVGDPVEMAVRYEEEGADEIAILDI---TAAPEGRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKV  103 (253)
T ss_dssp             HEEECHHHHHHHHHHTTCSCEEEEEC---CCCTTTHHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             EECCCHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHCC---CCCEEEECCEEECCCCHHHHHCCCCEE
T ss_conf             88889999999999879998999826---562125750489999997315---987698343466010013444376510


Q ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE----------CCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             201383000275638970358999999999970891670----------1404887642068899999999966993997
Q gi|254780676|r  193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT----------KSGIMLGLGETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T----------KSGlMvGLGEt~eEi~e~l~DLr~~gvdilT  262 (329)
                      +=|..+.....-.           ..+..+....+.+..          +--...|.........+....+.+.|++.++
T Consensus       104 ~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~i~  172 (253)
T 1h5y_A          104 SVNTAAVRNPQLV-----------ALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEIL  172 (253)
T ss_dssp             EESHHHHHCTHHH-----------HHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEE
T ss_pred             ECCCEEEECCHHH-----------HHHHHCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             1433257560465-----------66764359841999999998189459999688434797799999999847998899


Q ss_pred             CCH
Q ss_conf             502
Q gi|254780676|r  263 MGQ  265 (329)
Q Consensus       263 iGQ  265 (329)
                      ++.
T Consensus       173 ~~~  175 (253)
T 1h5y_A          173 LTS  175 (253)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             986


No 95 
>>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A (A:)
Probab=41.79  E-value=26  Score=16.29  Aligned_cols=142  Identities=9%  Similarity=0.028  Sum_probs=56.6

Q ss_pred             HHHHHHHHCCCEEEEEC----CC---CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHHHCCC
Q ss_conf             99999970775189850----54---453453258999999999985335868998154623446----89998741070
Q gi|254780676|r  121 ISWAVRSMKLSHVVITS----VD---RDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKP----HALEKVVSAKP  189 (329)
Q Consensus       121 vA~av~~l~Lk~vViTS----V~---RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~----~al~~v~~A~p  189 (329)
                      -|..+.+.|.+-+.++|    ..   .||..--.-......++.|....+--.|==+--.|-|+.    ..++.+.++|.
T Consensus        29 sAri~~~aG~~ai~~sg~~~a~~~~g~pd~~~~~~~e~~~~~~~i~~a~~~PiiaD~d~G~~g~~~~v~~~v~~l~~aGa  108 (295)
T 1xg4_A           29 HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGA  108 (295)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99999983999996508999987379998775762466788887753046770133112234312389999999996799


Q ss_pred             HHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             2332-----0138300027563897035899999999997089167014048876420688999999999669939975
Q gi|254780676|r  190 DVFN-----HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       190 dV~n-----HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +-++     +.-.++..+.+.+.|....-..+..-..++ .++++..+.=-=.-.++..+|.++-..-+.++|+|.+-|
T Consensus       109 ~gv~iED~~~~k~~~~~~~~~~i~~~~~~~ki~aa~~a~-~~~~~~i~ARtda~~~~~~~eai~Ra~ay~~AGAd~i~i  186 (295)
T 1xg4_A          109 AGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAK-TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFP  186 (295)
T ss_dssp             SEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHC-SSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             688731653544445566533217999999999999715-898723476345533068899999999887569968984


No 96 
>>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} (A:)
Probab=41.52  E-value=26  Score=16.26  Aligned_cols=167  Identities=15%  Similarity=0.064  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHH
Q ss_conf             88823579999999970775189850544534532589999999999853358689981546234468999874107023
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV  191 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV  191 (329)
                      ..|+++..+.++++...|++++.|.--+      +   +|.+.++.+++..|.+.+-.   ++.-..+.+....+++.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~G~~~i~l~~~~------~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~   88 (217)
T 3lab_A           21 IDDLVHAIPXAKALVAGGVHLLEVTLRT------E---AGLAAISAIKKAVPEAIVGA---GTVCTADDFQKAIDAGAQF   88 (217)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEEETTS------T---THHHHHHHHHHHCTTSEEEE---ECCCSHHHHHHHHHHTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCC------C---HHHHHHHHHHHHCCCCEEEE---EECCCHHHHHHHHHHCCCE
T ss_conf             8999999999999998799889996899------0---49999999998689973989---9724368999999748999


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC
Q ss_conf             32013830002756389703589999999999708916701404887642068899999999966993997502227861
Q gi|254780676|r  192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR  271 (329)
Q Consensus       192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~  271 (329)
                      +-|--++              ...++..+..+..+  .  ..++.+.---|.+|+...    ...|++.+-+|+.-..+.
T Consensus        89 i~~~~~~--------------~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~e~~~a----~~~g~~~~~~~~~~~~~~  146 (217)
T 3lab_A           89 IVSPGLT--------------PELIEKAKQVKLDG--Q--WQGVFLPGVATASEVXIA----AQAGITQLKCFPASAIGG  146 (217)
T ss_dssp             EEESSCC--------------HHHHHHHHHHHHHC--S--CCCEEEEEECSHHHHHHH----HHTTCCEEEETTTTTTTH
T ss_pred             EECCCCC--------------HHHHHHHHHCCCCC--C--CCCCCCCCCCCHHHHHHH----HHCCCCEEEECCHHHCCC
T ss_conf             9989999--------------99999999839984--3--355453785988999999----987999799650431378


Q ss_pred             C-----------CCC--CCCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCCHHHHHHH
Q ss_conf             0-----------078--0002384699999999997496243404-8300103189999
Q gi|254780676|r  272 K-----------HHK--VESFVTPQDFKSYETIAYSKGFLMVSAS-PLTRSSYHAGDDF  316 (329)
Q Consensus       272 ~-----------h~p--V~ryv~P~eF~~~~~~a~~~Gf~~V~Sg-PlVRSSY~A~e~~  316 (329)
                      .           +.|  +.--++|+...++.    +.|...|..| -++++.+-++..+
T Consensus       147 ~~~~~~~~~~~~~ipi~a~GGI~~~~v~~~~----~~Gad~v~vGsai~~~~~~~~~~~  201 (217)
T 3lab_A          147 AKLLKAWSGPFPDIQFCPTGGISKDNYKEYL----GLPNVICAGGSWLTESKLLIEGDW  201 (217)
T ss_dssp             HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHH----HSTTBCCEEESGGGCHHHHHHTCH
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCHHHHHHHH----HCCCEEEEECCHHCCHHHHHCCCH
T ss_conf             9999997457999838853799989999999----689829998831069666523899


No 97 
>>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235)
Probab=41.47  E-value=26  Score=16.26  Aligned_cols=128  Identities=9%  Similarity=-0.008  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHHH
Q ss_conf             623446899987410702332013830002756389703589999999999708916701404887642-0688999999
Q gi|254780676|r  173 DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLMD  251 (329)
Q Consensus       173 Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l~  251 (329)
                      |+.+....++.++++|.+-+-=+--|-|-.+      -+.+...++++.+.+..      -.+|+|.|. +.+|.++..+
T Consensus        45 D~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~------Lt~eEr~~~v~~~~~~~------~pvi~gv~~~~t~~~i~~a~  112 (235)
T 2hmc_A           45 DFDALVRKGKELIADGXSAVVYCGSXGDWPL------LTDEQRXEGVERLVKAG------IPVIVGTGAVNTASAVAHAV  112 (235)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEESSGGGTGGG------SCHHHHHHHHHHHHHTT------CCEEEECCCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECEECCCCCC------CCHHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999999779999997833757230------89999999999874157------75100442013778888887


Q ss_pred             HHHHCCCCEEECC-HHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHC-CCC-EEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             9996699399750-2227861007800023846-999999999974-962-43404830010318999999999
Q gi|254780676|r  252 DLRTADVDFLTMG-QYLQPTRKHHKVESFVTPQ-DFKSYETIAYSK-GFL-MVSASPLTRSSYHAGDDFLRLKN  321 (329)
Q Consensus       252 DLr~~gvdilTiG-QYL~Ps~~h~pV~ryv~P~-eF~~~~~~a~~~-Gf~-~V~SgPlVRSSY~A~e~~~~~~~  321 (329)
                      +..++|+|-+-+. .|.         .++..++ -++.|++++... ++. .+..-|-.--....-+.+.++.+
T Consensus       113 ~A~~~Gadavlv~~P~~---------~~~~~~~~i~~~~~~ia~~~~~~pi~iyn~P~~~g~~~~~~~l~~La~  177 (235)
T 2hmc_A          113 HAQKVGAKGLXVIPRVL---------SRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAE  177 (235)
T ss_dssp             HHHHHTCSEEEECCCCS---------SSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEECCCC---------CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCC
T ss_conf             89982885022200112---------333541568999986631587744888703446454442134433013


No 98 
>>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243)
Probab=41.11  E-value=27  Score=16.22  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHHHHHCCCCEE
Q ss_conf             8999999999970891670140488764-206889999999996699399
Q gi|254780676|r  213 FHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDDLRTADVDFL  261 (329)
Q Consensus       213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~DLr~~gvdil  261 (329)
                      +.+.++++.+.+...   -+.-+|+|.| .+-+|.++.++...++|+|-+
T Consensus        53 ~Er~~l~~~~~~~~~---~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~i   99 (243)
T 2rfg_A           53 EEHKRVVALVAEQAQ---GRVPVIAGAGSNNPVEAVRYAQHAQQAGADAV   99 (243)
T ss_dssp             HHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             999999999999918---98409973454469999999999998499976


No 99 
>>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} (A:1-234)
Probab=40.85  E-value=27  Score=16.19  Aligned_cols=120  Identities=15%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCC-----CEEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHH
Q ss_conf             689999999974982365257887876750897-----26999866522353522344678998--88823579999999
Q gi|254780676|r   53 GYKETYNILRSRNLTTVCEEAGCPNIGECWNKN-----HATFMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAV  125 (329)
Q Consensus        53 ~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~g-----tATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av  125 (329)
                      ....+++++++.+.-+.      ||.+.+++.+     -.-.+.+|+-.      .+...|.|.  .+..+|-...++.|
T Consensus        22 ~~~~lr~~~~~~~~i~~------~~~~D~~sA~i~~~~g~~ai~~s~~~------~a~~~G~~D~~~l~~~e~~~~~~~i   89 (234)
T 1oy0_A           22 RTHHLQRWKADGHKWAM------LTAYDYSTARIFDEAGIPVLLVGDSA------ANVVYGYDTTVPISIDELIPLVRGV   89 (234)
T ss_dssp             CHHHHHHHHHHTCCEEE------EECCSHHHHHHHHTTTCCEEEECTTH------HHHTTCCSSSSSCCGGGTHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEE------EECCCHHHHHHHHHCCCCEEEECCCH------HHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             69999999867994899------95689999999997599889976744------8640577677767889999999999


Q ss_pred             HHH-CCCEEEEECCCCCCCCCC-----HHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             970-775189850544534532-----5899999999998533-58689981546234468999874107023320
Q gi|254780676|r  126 RSM-KLSHVVITSVDRDDLDDG-----GAQHFAEVISAIRESA-PSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH  194 (329)
Q Consensus       126 ~~l-~Lk~vViTSV~RDDL~Dg-----GA~hfa~~I~~Ir~~~-P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH  194 (329)
                      .+. .+-+++.      |+++|     ++.+..++|+.+.+.- -++.||    |-.+..........+...+..|
T Consensus        90 ~~~~~~~~iia------D~~~G~~~~~~~~~v~~~v~~l~~aGa~gi~iE----D~~~~~~~~~~~~~~~i~~~~~  155 (234)
T 1oy0_A           90 VRGAPHALVVA------DLPFGSYEAGPTAALAAATRFLKDGGAHAVKLE----GGERVAEQIACLTAAGIPVMAH  155 (234)
T ss_dssp             HHHCTTSEEEE------ECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEE----BSGGGHHHHHHHHHHTCCEEEE
T ss_pred             HCCCCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC----CCHHHHHHHHHHHHCCCCEEEE
T ss_conf             73787653784------366534477999999999999997434545546----7475999999999879966752


No 100
>>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} (A:1-280)
Probab=40.31  E-value=27  Score=16.14  Aligned_cols=15  Identities=20%  Similarity=0.107  Sum_probs=5.6

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             882357999999997
Q gi|254780676|r  113 LDPQEPENISWAVRS  127 (329)
Q Consensus       113 ~D~~EP~rvA~av~~  127 (329)
                      +..+|=.++.+.+.+
T Consensus        84 Ls~eEr~~l~~~~~~   98 (280)
T 2r8w_A           84 LTREERRRAIEAAAT   98 (280)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             899999999999999


No 101
>>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* (A:)
Probab=39.89  E-value=28  Score=16.09  Aligned_cols=146  Identities=19%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             CCCCHHHHHHH-------HHHHHHHCCCEEEEE-------------C-CCCCCCCCCH-----HHHHHHHHHHHHHHCC-
Q ss_conf             88882357999-------999997077518985-------------0-5445345325-----8999999999985335-
Q gi|254780676|r  111 QPLDPQEPENI-------SWAVRSMKLSHVVIT-------------S-VDRDDLDDGG-----AQHFAEVISAIRESAP-  163 (329)
Q Consensus       111 ~~~D~~EP~rv-------A~av~~l~Lk~vViT-------------S-V~RDDL~DgG-----A~hfa~~I~~Ir~~~P-  163 (329)
                      .++..+|...+       |.-+++.|..-|-|.             . -.|+|-- ||     +....++|++||+..+ 
T Consensus       140 ~~lt~~~i~~~~~~~~~AA~~a~~aGfDgVeih~a~gyL~~qf~sp~~N~R~d~y-Ggsl~nR~r~~~eii~air~~~~~  218 (349)
T 3hgj_A          140 EPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAY-GGSLENRMRFPLQVAQAVREVVPR  218 (349)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             6489999999999999999999983999578522504699984598779887776-868777679999999999997289


Q ss_pred             CCEEEEECC--CCCC-------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             868998154--6234-------4689998741070233201383000275638970358999999999970891670140
Q gi|254780676|r  164 STTIEVLTP--DFLR-------KPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSG  234 (329)
Q Consensus       164 ~~~IEvLiP--Df~G-------~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSG  234 (329)
                      +.+|-+.++  |+..       -.+.++.+.+++.|.++--.-+...-+   ...+.+...+...+.+|.....-+    
T Consensus       219 ~~~v~iRi~~~~~~~~~~~~ee~~~la~~l~~~gvd~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~~pv----  291 (349)
T 3hgj_A          219 ELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRV---RIPLAPGFQVPFADAVRKRVGLRT----  291 (349)
T ss_dssp             TSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSS---CCCCCTTTTHHHHHHHHHHHCCEE----
T ss_pred             CCEEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCE----
T ss_conf             8728996761005689988899999999999739886874146431333---456675433689999998769868----


Q ss_pred             EEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             488764206889999999996699399750222
Q gi|254780676|r  235 IMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       235 lMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      ++.|=.-+.++..+   -|.+-+||++.||..+
T Consensus       292 i~~G~i~~~~~a~~---~l~~~~~D~V~igR~~  321 (349)
T 3hgj_A          292 GAVGLITTPEQAET---LLQAGSADLVLLGRVL  321 (349)
T ss_dssp             EECSSCCCHHHHHH---HHHTTSCSEEEESTHH
T ss_pred             EEECCCCCHHHHHH---HHHCCCCCHHHHHHHH
T ss_conf             99889399999999---9987993014988999


No 102
>>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219)
Probab=39.81  E-value=28  Score=16.09  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=13.0

Q ss_pred             EEEEEEE-CHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             4887642-0688999999999669939975
Q gi|254780676|r  235 IMLGLGE-TRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       235 lMvGLGE-t~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +|+|.|. +-+|.++.+++..++|+|-+-+
T Consensus        84 vi~gv~~~st~~~i~~a~~a~~~Gad~i~v  113 (219)
T 1xky_A           84 VIAGTGSNNTHASIDLTKKATEVGVDAVML  113 (219)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             675356422899999999999749999997


No 103
>>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:)
Probab=39.76  E-value=22  Score=16.80  Aligned_cols=143  Identities=7%  Similarity=-0.040  Sum_probs=67.5

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEECCCCC
Q ss_conf             6789988-88235799999999707751898505445345325899999999998---------5335868998154623
Q gi|254780676|r  106 ATGKPQP-LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIR---------ESAPSTTIEVLTPDFL  175 (329)
Q Consensus       106 ~~G~P~~-~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir---------~~~P~~~IEvLiPDf~  175 (329)
                      ..|.+.+ +.+.+-.++-+++.++|+.--        .|-.--+...++.|.+.-         ..++.-+|-||+--  
T Consensus        72 ~~~~~~~~~t~~q~~~ie~~~~~~Gls~~--------~LmE~Ag~~~a~~i~~~~~~~~~~~~~~~~~~~~V~vl~G~--  141 (306)
T 3d3j_A           72 DSGLVVPSISYELHKKLLSVAEKHGLTLE--------RRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGP--  141 (306)
T ss_dssp             TTCCEEECCCHHHHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHHHHHHHC-----------CCCEEEEEECS--
T ss_pred             CCCCEECCCCHHHHHHHHHHHHHCCCCHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC--
T ss_conf             99827225889999999999998099889--------99999999999999998287632464546889979999899--


Q ss_pred             CCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC--------CCE----EEEEEEC-
Q ss_conf             446899987410702332013830002756389703589999999999708916701--------404----8876420-
Q gi|254780676|r  176 RKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK--------SGI----MLGLGET-  242 (329)
Q Consensus       176 G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK--------SGl----MvGLGEt-  242 (329)
                      |+.-. +-+. ++-...+|+.+.+=-+..   +....+....-+...+..+..+...        ..+    |+|.|.+ 
T Consensus       142 gnnGg-dgl~-~AR~L~~~G~~V~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIDal~G~g~~r  216 (306)
T 3d3j_A          142 HVKGA-QGIS-CGRHLANHDVQVILFLPN---FVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVF  216 (306)
T ss_dssp             SHHHH-HHHH-HHHHHHHTTCEEEEECCC---CSSCCHHHHHHHHHHHTSSCEEESCSTTSCSSCCSEEEEECCCTTCGG
T ss_pred             CCCCH-HHHH-HHHHHHHCCCEEEEEEEC---CCCCCHHHHHHHHHHHHCCCCEECCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf             98729-9999-999999779838999727---866798999999999863896534235534577758998424366677


Q ss_pred             ---HHHHHHHHHHHHHCCCCEEEC
Q ss_conf             ---688999999999669939975
Q gi|254780676|r  243 ---RNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       243 ---~eEi~e~l~DLr~~gvdilTi  263 (329)
                         .+.+.+++.-+...+..+|-|
T Consensus       217 ~~~~~~~~~li~~~N~~~~~vlsi  240 (306)
T 3d3j_A          217 LRDQPWYKAAVAWANQNRAPVLSI  240 (306)
T ss_dssp             GGGCHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             765199999999998569977998


No 104
>>3ler_A DHDPS, dihydrodipicolinate synthase; TIM barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MCL MSE; 1.84A {Campylobacter jejuni subsp} (A:)
Probab=39.14  E-value=28  Score=16.02  Aligned_cols=27  Identities=4%  Similarity=-0.025  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             823579999999970775189850544
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDR  140 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~R  140 (329)
                      +..|-.+.|+.++++|...+.+...--
T Consensus        88 ~t~~~i~~a~~A~~~Gad~ilv~~P~~  114 (301)
T 3ler_A           88 ATHEAVGLAKFAKEHGADGILSVAPYY  114 (301)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             099999999999975999887358888


No 105
>>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229)
Probab=38.95  E-value=29  Score=16.00  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCEEEEEEE-CHHHHHHHH
Q ss_conf             62344689998741070233201383000275638970358999999999970-8916701404887642-068899999
Q gi|254780676|r  173 DFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKEL-DPLIFTKSGIMLGLGE-TRNEILQLM  250 (329)
Q Consensus       173 Df~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~-~~~i~TKSGlMvGLGE-t~eEi~e~l  250 (329)
                      |+.+-...++.++++|.+-+-=|--|-+-.+      -+-+...++++.+.+. +.+    --+|+|.|. +-+|.++..
T Consensus        21 D~~~l~~~i~~~~~~Gv~gl~~~G~tGE~~~------Lt~~Er~~~~~~~~~~~~~~----~~ii~gv~~~s~~~~i~~a   90 (229)
T 3daq_A           21 NLEALKAHVNFLLENNAQAIIVNGTTAESPT------LTTDEKELILKTVIDLVDKR----VPVIAGTGTNDTEKSIQAS   90 (229)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEESSGGGTGGG------SCHHHHHHHHHHHHHHHTTS----SCEEEECCCSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCHHHHHHHHHHHHHHHCCC----CCEEECCCCHHHHHHHHHH
T ss_conf             9999999999999769999997805644002------78999999975567750244----7501112111378888999


Q ss_pred             HHHHHCCCCEEEC--CHHCCCCC
Q ss_conf             9999669939975--02227861
Q gi|254780676|r  251 DDLRTADVDFLTM--GQYLQPTR  271 (329)
Q Consensus       251 ~DLr~~gvdilTi--GQYL~Ps~  271 (329)
                      +...++|+|-+-+  -.|..||.
T Consensus        91 ~~a~~~G~d~i~v~pP~~~~~~~  113 (229)
T 3daq_A           91 IQAKALGADAIMLITPYYNKTNQ  113 (229)
T ss_dssp             HHHHHHTCSEEEEECCCSSCCCH
T ss_pred             HHHHHCCCCEEEEECCCCCCCCH
T ss_conf             99996299828862021557999


No 106
>>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} (A:1-235)
Probab=38.81  E-value=15  Score=17.88  Aligned_cols=129  Identities=16%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHCCCEEEECCCEEEEEEE
Q ss_conf             899815462344689998741070233201383000275638970358----9999999999708916701404887642
Q gi|254780676|r  166 TIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYF----HSLRLLQRVKELDPLIFTKSGIMLGLGE  241 (329)
Q Consensus       166 ~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGLGE  241 (329)
                      .|+-.++||   ..+....++++-|-+.=|.=.--..-..-..+++..    .-++++..+++...   ...-..+..|.
T Consensus        64 qI~~~~~~~---~~aa~~a~~agfDgVeih~~~p~~n~~~~~~G~s~~~r~~~~~~i~~a~~~~~~---~~~~~~~~~~~  137 (235)
T 1vhn_A           64 QIFGSEPNE---LSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS---GKFSVKTRLGW  137 (235)
T ss_dssp             EEECSCHHH---HHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS---SEEEEEEESCS
T ss_pred             EEECCCHHH---HHHHHHHHHCCCEEEEEEEEECCHHHHCCCCCEEEECCHHHHHHHHHHHHHHCC---CCCCCCCCCCC
T ss_conf             885378788---888999875375276466530520431233231330483889999888775023---33344432475


Q ss_pred             CHHHHHHHHHHHHHCCCCEEECC-----HHCCCCCCC---------CCC---CCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             06889999999996699399750-----222786100---------780---002384699999999997496243404
Q gi|254780676|r  242 TRNEILQLMDDLRTADVDFLTMG-----QYLQPTRKH---------HKV---ESFVTPQDFKSYETIAYSKGFLMVSAS  303 (329)
Q Consensus       242 t~eEi~e~l~DLr~~gvdilTiG-----QYL~Ps~~h---------~pV---~ryv~P~eF~~~~~~a~~~Gf~~V~Sg  303 (329)
                      ..++..+.+..|.+.|+|.|++.     |+-++....         .||   -...++++.+++-+.+   |...|+-|
T Consensus       138 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~G~i~s~~~a~~~l~~~---~~D~V~ig  213 (235)
T 1vhn_A          138 EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEES---GCDGLLVA  213 (235)
T ss_dssp             SSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCCSSCEEEESSCCSHHHHHHHHHHH---CCSEEEES
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---CCCEEEEH
T ss_conf             42024578899997395389850023440468851245677764433001366669999999999711---99968534


No 107
>>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} (A:)
Probab=38.67  E-value=29  Score=15.97  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=13.9

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             999999970775189850544534
Q gi|254780676|r  120 NISWAVRSMKLSHVVITSVDRDDL  143 (329)
Q Consensus       120 rvA~av~~l~Lk~vViTSV~RDDL  143 (329)
                      .-.+.|+++.-...|++-|.+-|-
T Consensus       140 ~~~~~I~~~~~~f~v~sEvG~Kd~  163 (276)
T 1u83_A          140 EKAAYIADFSDEFLVLSEVGSKDA  163 (276)
T ss_dssp             HHHHHHHHHTTTSEEEEECSCCC-
T ss_pred             HHHHHHHHHHHCCEECCCCCCCCC
T ss_conf             999999999967920454577676


No 108
>>1oya_A OLD yellow enzyme; oxidoreductase (flavoprotein); HET: FMN; 2.00A {Saccharomyces pastorianus} (A:1-120,A:164-351)
Probab=38.40  E-value=29  Score=15.94  Aligned_cols=159  Identities=10%  Similarity=0.017  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCC---CC----CCHHHHHHHHHCCCHHHHHCCCCC----C--CCCCCCCC---
Q ss_conf             32589999999999853358689981546---23----446899987410702332013830----0--02756389---
Q gi|254780676|r  145 DGGAQHFAEVISAIRESAPSTTIEVLTPD---FL----RKPHALEKVVSAKPDVFNHNLETV----A--SNYLMVRP---  208 (329)
Q Consensus       145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD---f~----G~~~al~~v~~A~pdV~nHNiETV----~--rLy~~VRp---  208 (329)
                      |.-...|.+.+.+|++..--+.+.+--+.   +.    .-.++.+.+.++|-|.+.=|.---    .  .-+..+|.   
T Consensus        92 ~~~~~~~~~i~~~vh~~g~~~~~Ql~h~G~~~i~~~i~~~~~aA~~a~eaG~DgIein~~~~~L~~qf~~p~~n~r~d~~  171 (308)
T 1oya_A           92 EEQMVEWTKIFNAIHEKKSFVWVQLWVLGKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEY  171 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCCC
T ss_conf             89987767999999617754414344146788999999999999999973988789840021149873376258987767


Q ss_pred             CCHHH----HHHHHHHHHHHCCCEEEECCCEEEEE------------EECHHHHHHHHHHHHHCCCCEEECCH--HCCCC
Q ss_conf             70358----99999999997089167014048876------------42068899999999966993997502--22786
Q gi|254780676|r  209 GARYF----HSLRLLQRVKELDPLIFTKSGIMLGL------------GETRNEILQLMDDLRTADVDFLTMGQ--YLQPT  270 (329)
Q Consensus       209 ~a~Y~----rSL~vL~~aK~~~~~i~TKSGlMvGL------------GEt~eEi~e~l~DLr~~gvdilTiGQ--YL~Ps  270 (329)
                      ++...    --.++++.+++..++++  =++-+..            +++-++.++.+.-|.++|||.+++..  +-+..
T Consensus       172 G~~l~~r~r~~~eii~~vr~a~~~~p--V~vKi~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~g~d~i~i~~~~~~~~~  249 (308)
T 1oya_A          172 GGSIENRARFTLEVVDALVEAIGHEK--VGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPR  249 (308)
T ss_dssp             SSSHHHHTHHHHHHHHHHHHHHCGGG--EEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf             98788876899999999999718775--7999772004567777410015789999999999744346443411230466


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             10078000238469999999999749624340483
Q gi|254780676|r  271 RKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPL  305 (329)
Q Consensus       271 ~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl  305 (329)
                      ....+-..+..+...+..+++........+.+|-.
T Consensus       250 ~~~~~~~~~~~~~~l~~~~~i~~~~~iPvi~~GgI  284 (308)
T 1oya_A          250 VTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNF  284 (308)
T ss_dssp             CSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             77754455531000578999999838988997898


No 109
>>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} (A:)
Probab=38.24  E-value=29  Score=15.92  Aligned_cols=165  Identities=16%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             HHH-HHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q ss_conf             689-9999999749823652578878767508972699986652235352234467899888823579999999970---
Q gi|254780676|r   53 GYK-ETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSM---  128 (329)
Q Consensus        53 ~~~-~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l---  128 (329)
                      ++. .+-.+|++++.                   .|||.+.|+.=                  ...|..+-+.+++.   
T Consensus        68 ~~~~~~l~~L~~~~i-------------------~aTffv~g~~~------------------~~~~~~~~~~~~~Ghei  110 (247)
T 2j13_A           68 GYTGKILDVLKEKKV-------------------PATFFVTGHYI------------------KTQKDLLLRMKDEGHII  110 (247)
T ss_dssp             SCHHHHHHHHHHHTC-------------------CEEEEECHHHH------------------HHCHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHCCC-------------------CEEEEEECHHH------------------HHCHHHHHHCCCCCCEE
T ss_conf             765999999998799-------------------68999967313------------------32917776410689589


Q ss_pred             ---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC-CHHHHHCCCCCCCCCC
Q ss_conf             ---775189850544534532589999999999853358689981546234468999874107-0233201383000275
Q gi|254780676|r  129 ---KLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAK-PDVFNHNLETVASNYL  204 (329)
Q Consensus       129 ---~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~-pdV~nHNiETV~rLy~  204 (329)
                         +..|.-++.++.+.+    ...+.++.+.+++..+....-.-.|-+....+.+..+...+ .-+..-...       
T Consensus       111 g~Ht~~H~~l~~l~~e~~----~~ei~~~~~~l~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------  179 (247)
T 2j13_A          111 GNHSWSHPDFTAVNDEKL----REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVFWSLA-------  179 (247)
T ss_dssp             EECCSSCCCGGGSCHHHH----HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEECCSEE-------
T ss_pred             EEECCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCC-------
T ss_conf             740256787111138999----999999999999986378865456870333123469999809857723455-------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE----ECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf             638970358999999999970891670140488764----20688999999999669939975022278
Q gi|254780676|r  205 MVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG----ETRNEILQLMDDLRTADVDFLTMGQYLQP  269 (329)
Q Consensus       205 ~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG----Et~eEi~e~l~DLr~~gvdilTiGQYL~P  269 (329)
                         .......+...+.+....... ..+.+.++=+.    .+.+.+-+.++.|++.|-.++|++|||..
T Consensus       180 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~G~~~vtl~~~~~~  244 (247)
T 2j13_A          180 ---FLDWKVDEQRGWQYAHNNVMT-MIHPGSILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKS  244 (247)
T ss_dssp             ---CCCC-------------------CCTTBEEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHT
T ss_pred             ---CCCCCCCCHHHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCC
T ss_conf             ---677642101589999999995-27999689953999779999999999999789999886996357


No 110
>>3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei} (A:)
Probab=38.15  E-value=9  Score=19.54  Aligned_cols=226  Identities=10%  Similarity=0.011  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCC-----EEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH
Q ss_conf             899999999749823652578878767508972-----6999866522353522344678998--888235799999999
Q gi|254780676|r   54 YKETYNILRSRNLTTVCEEAGCPNIGECWNKNH-----ATFMILGAICTRACTFCNVATGKPQ--PLDPQEPENISWAVR  126 (329)
Q Consensus        54 ~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gt-----ATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~rvA~av~  126 (329)
                      ...+++++++...-..      ||...|++...     .-.+.+|+-.      .+...|.|.  .++.+|-...+..|.
T Consensus        12 ~~~lr~l~~~~~~i~~------~~~~D~~sA~~~e~~g~~ai~~s~~~------~a~~~G~pD~~~~~~~e~~~~~~~I~   79 (269)
T 3ez4_A           12 VPKLQAMREAGEKIAM------LTSYDASFAALLDRANVDVQLIGDSL------GNVLQGQATTLPVTLDDIAYHTACVA   79 (269)
T ss_dssp             HHHHHHHHHHTCCEEE------EECCSHHHHHHHHHTTCSEEEECTTH------HHHTTCCSSSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEE------EECCCHHHHHHHHHCCCCEEEEECCH------HHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999848994899------98989999999987699999995778------97317886722454555778889998


Q ss_pred             HHCCCEEEEECCCCCCCCCCH---HHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHH------CC
Q ss_conf             707751898505445345325---89999999999853-358689981546234468999874107023320------13
Q gi|254780676|r  127 SMKLSHVVITSVDRDDLDDGG---AQHFAEVISAIRES-APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNH------NL  196 (329)
Q Consensus       127 ~l~Lk~vViTSV~RDDL~DgG---A~hfa~~I~~Ir~~-~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nH------Ni  196 (329)
                      +.--...|+     +|+++|+   ....+++|+++-+. .-++.||    |-.+..........+...+..|      -+
T Consensus        80 ~~~~~~pii-----~D~~~G~~g~~~~v~~~v~~~~~aGa~gi~iE----D~~~~~~~~~~~~~~~i~~~~~~~~i~a~~  150 (269)
T 3ez4_A           80 RAQPRGLVV-----ADLPFGTYGTPADAFASAVKLMRAGAQMVKLE----GGEWLAETVRFLVERAVPVCAHVGLTPQSV  150 (269)
T ss_dssp             HTCCSSEEE-----EECCTTSCSSHHHHHHHHHHHHHHTCSEEEEE----CSGGGHHHHHHHHHTTCCEEEEEC------
T ss_pred             HHCCCCEEE-----ECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEC----CCHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             527771266-----13542113563899999999996598776304----535788999999982974772520050156


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC
Q ss_conf             83000275638970358999999999970891670140488764206889999999996699399750222786100780
Q gi|254780676|r  197 ETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV  276 (329)
Q Consensus       197 ETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV  276 (329)
                      .....++-.-|+-+..+..++-.+...++|.+..    ++-|+-  .++.....   .....-.+.++.=.-.....   
T Consensus       151 ~a~~d~~i~aRtda~~~e~i~Ra~ay~eaGAd~i----~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---  218 (269)
T 3ez4_A          151 HAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLI----VLEAVP--TLVAAEVT---RELSIPTIGIGAGAECSGQV---  218 (269)
T ss_dssp             --------------CHHHHHHHHHHHHHHTCSEE----EEESCC--HHHHHHHH---HHCSSCEEEESSCSCSSEEE---
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEE----ECCCCC--HHHHHHHH---HHCCCEEEEECCCCCCCEEE---
T ss_conf             5538860316448889999999999985201453----013546--68999998---41895089713677786038---


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEECCCC-CCCCHHH-HHHHHHHHHH
Q ss_conf             00238469999999999749624340483-0010318-9999999999
Q gi|254780676|r  277 ESFVTPQDFKSYETIAYSKGFLMVSASPL-TRSSYHA-GDDFLRLKNN  322 (329)
Q Consensus       277 ~ryv~P~eF~~~~~~a~~~Gf~~V~SgPl-VRSSY~A-~e~~~~~~~~  322 (329)
                         .+.++   +    .++|+..+.-|+. .|+++.+ .+.+..+.+.
T Consensus       219 ---l~~~~---l----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (269)
T 3ez4_A          219 ---LVLHD---M----LGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRA  256 (269)
T ss_dssp             ---ECHHH---H----TTCSCSSCCTTCCCTTTTCSSHHHHHHHHHHH
T ss_pred             ---EEHHH---H----HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---85777---5----47899999826988761579999999999999


No 111
>>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} (A:164-276)
Probab=37.23  E-value=30  Score=15.81  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             99999999853-35868998154623446899987410702332013830002756389703589999999999708916
Q gi|254780676|r  151 FAEVISAIRES-APSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI  229 (329)
Q Consensus       151 fa~~I~~Ir~~-~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i  229 (329)
                      +-..++++|+. .|+..|++-+-    +.+.+....++++|++-=            -+ ..=......++..++..+++
T Consensus        20 ~~~~~~~~~~~~~~~~~ig~~~~----~~~e~~~a~~~gaD~i~~------------~~-~~~~~~~~~v~~~~~~~~~i   82 (113)
T 2jbm_A           20 VEKAVRAARQAADFALKVEVECS----SLQEAVQAAEAGADLVLL------------DN-FKPEELHPTATVLKAQFPSV   82 (113)
T ss_dssp             HHHHHHHHHHHHTTTSCEEEEES----SHHHHHHHHHTTCSEEEE------------ES-CCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHCCCCEEEEECCC----CHHHHHHHHHCCCCEEEE------------CC-CCHHHHHHHHHHHHCCCCCE
T ss_conf             57510034330254058896358----889999999759989997------------58-99999999999984648966


Q ss_pred             EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf             701404887642068899999999966993997502
Q gi|254780676|r  230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ  265 (329)
Q Consensus       230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ  265 (329)
                      .    ++..=|=|.+    .+.++.++|+|.+-+|-
T Consensus        83 p----i~a~GGIt~~----~i~~~~~aGad~i~vga  110 (113)
T 2jbm_A           83 A----VEASGGITLD----NLPQFCGPHIDVISMGM  110 (113)
T ss_dssp             E----EEEESSCCTT----THHHHCCTTCCEEECTH
T ss_pred             E----EEEECCCCHH----HHHHHHHCCCCEEECCH
T ss_conf             9----9998999899----99999973999998596


No 112
>>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} (A:)
Probab=37.04  E-value=30  Score=15.79  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             999999707751898505445345325899999999998533
Q gi|254780676|r  121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESA  162 (329)
Q Consensus       121 vA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~  162 (329)
                      -|...+.+|.+||.|----|-.+-+.-....++.++...+..
T Consensus        80 S~~~Lkd~G~~~vliGHSERR~~f~Et~~~i~~Kv~~a~~~g  121 (257)
T 2dp3_A           80 SVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG  121 (257)
T ss_dssp             CHHHHHHTTCCEEEECCHHHHHTSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             177776316524664245443344200889999999999759


No 113
>>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392)
Probab=37.03  E-value=30  Score=15.79  Aligned_cols=148  Identities=14%  Similarity=0.011  Sum_probs=92.0

Q ss_pred             CHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHCCCHH
Q ss_conf             8235799999-99970775189850544534532589999999999853358689981546234-468999874107023
Q gi|254780676|r  114 DPQEPENISW-AVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR-KPHALEKVVSAKPDV  191 (329)
Q Consensus       114 D~~EP~rvA~-av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G-~~~al~~v~~A~pdV  191 (329)
                      |..+-.-+|+ .++.++.|.|.|-..|    .+.|-+......+..++..-.+.-+.-+|.-.. ....+..+.+++||+
T Consensus         2 d~~q~~ala~~i~~~~g~k~Vaii~~d----~~~G~~~~~~f~~~l~~~G~evv~~~~~~~~~~d~s~~i~~ik~a~pdv   77 (172)
T 3lkb_A            2 YSEQVVALLEYIAREKKGAKVALVVHP----SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEY   77 (172)
T ss_dssp             HHHHHHHHHHHHHHHCTTCEEEEEECS----SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECC----CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf             688888899999876289779999335----6303899999999998749879999814899723557888765369989


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCC
Q ss_conf             32013830002756389703589999999999708916701404887642068899999999966993997502227861
Q gi|254780676|r  192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTR  271 (329)
Q Consensus       192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~  271 (329)
                      +-.              .........+++.+++.|.+.    -++.+-+=..+.+.+.   +-+..-.++...+|-.+..
T Consensus        78 Vv~--------------~~~~~~~~~ilk~a~~~G~~~----~~i~~~~~~~~~~~~~---~g~~~eGv~~~~~~~~~~~  136 (172)
T 3lkb_A           78 VVH--------------QNVAGPVANILKDAKRLGLKM----RHLGAHYTGGPDLIAL---AGDAAEGFLWATSFYMAGL  136 (172)
T ss_dssp             EEE--------------ESCHHHHHHHHHHHHHTTCCC----EEEECGGGCSHHHHHH---HGGGGTTCEEEESBCCTCB
T ss_pred             EEE--------------ECCCHHHHHHHHHHHHCCCCC----EEEEECCCCCHHHHHH---HHHHHCCEEEEEECCCCCE
T ss_conf             999--------------366267999999999839996----4999556788889988---7887587799995277748


Q ss_pred             CC--------CCCCCCCCHHHHH
Q ss_conf             00--------7800023846999
Q gi|254780676|r  272 KH--------HKVESFVTPQDFK  286 (329)
Q Consensus       272 ~h--------~pV~ryv~P~eF~  286 (329)
                      +-        .||-+-.+-.-|.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
T 3lkb_A          137 RILEAKGGRFVPVTEPFTSALFR  159 (172)
T ss_dssp             EEEEEETTEEEECSCCBCCHHHH
T ss_pred             EEEEEECCEEEEECCCCCCCEEE
T ss_conf             99999999799925753412564


No 114
>>3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} (B:1-129)
Probab=37.03  E-value=28  Score=16.02  Aligned_cols=47  Identities=13%  Similarity=0.076  Sum_probs=34.8

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             86652235352234467899888823579999999970775189850
Q gi|254780676|r   91 ILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS  137 (329)
Q Consensus        91 ilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTS  137 (329)
                      .+|....+.=.|+.|.-..|..++++.-..+|+.+++.|..++=+|+
T Consensus        40 ~~~~~~~~~~~~~~vRi~~pG~it~~ql~~la~iA~kyg~g~i~~Tt   86 (129)
T 3c7b_B           40 VIKRVAESGDVIYVVRFGTPRLLSIYTVRELCDIADKYSDGYLRWTS   86 (129)
T ss_dssp             EEEEEETTSCEEEEEEECCCSEEEHHHHHHHHHHHHHHSTTEEEECT
T ss_pred             EEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             69997787986899967987724899999999999986898045516


No 115
>>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* (A:1-130,A:281-345)
Probab=36.75  E-value=31  Score=15.76  Aligned_cols=66  Identities=11%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE-CC-CCCCCHHHHHHHHHCC--CHHHHHCCCCCCCCCC--CCCCCCHHHH
Q ss_conf             9999999999853358689981-54-6234468999874107--0233201383000275--6389703589
Q gi|254780676|r  149 QHFAEVISAIRESAPSTTIEVL-TP-DFLRKPHALEKVVSAK--PDVFNHNLETVASNYL--MVRPGARYFH  214 (329)
Q Consensus       149 ~hfa~~I~~Ir~~~P~~~IEvL-iP-Df~G~~~al~~v~~A~--pdV~nHNiETV~rLy~--~VRp~a~Y~r  214 (329)
                      ..+.+.|.+..+.+|+++|++- +| +.....+.|.+-+.++  |||+.=+...++.+..  .+.+-.+|-.
T Consensus        31 ~~~~~~~~~f~k~~p~i~V~~~~~~~~~~~~~~kl~~~~~ag~~pDi~~~~~~~~~~~~~~g~l~dL~~~~~  102 (195)
T 2z8f_A           31 TLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSGEAPDLAQVGYAELPEVFTKGLLQDVTQYAE  102 (195)
T ss_dssp             CCHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCBCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHH
T ss_conf             999999999998883939999980797899999999999779998699989088999998699665853444


No 116
>>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A (A:1-278)
Probab=36.62  E-value=31  Score=15.75  Aligned_cols=33  Identities=12%  Similarity=0.114  Sum_probs=18.3

Q ss_pred             CCCCHHHHHHHHHHHHH-HCCCEEEEECCCCCCC
Q ss_conf             88882357999999997-0775189850544534
Q gi|254780676|r  111 QPLDPQEPENISWAVRS-MKLSHVVITSVDRDDL  143 (329)
Q Consensus       111 ~~~D~~EP~rvA~av~~-l~Lk~vViTSV~RDDL  143 (329)
                      ..+..+|=.++.+.+.+ .+=+-.||-+|...+.
T Consensus        79 ~~Lt~~Er~~l~~~~~~~~~~~~~vi~g~~~~st  112 (278)
T 2v9d_A           79 SQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNA  112 (278)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCH
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             7684999999999999872665524422455662


No 117
>>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} (A:)
Probab=36.35  E-value=31  Score=15.72  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCHHH---HHCCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             6899999999749823652578878767---50897269998665223535--223446789988882357999------
Q gi|254780676|r   53 GYKETYNILRSRNLTTVCEEAGCPNIGE---CWNKNHATFMILGAICTRAC--TFCNVATGKPQPLDPQEPENI------  121 (329)
Q Consensus        53 ~~~~~~~~l~~~~L~TVCeeA~CPNi~E---Cw~~gtATFMilG~~CTR~C--~FC~V~~G~P~~~D~~EP~rv------  121 (329)
                      .+.++...++.++-.-++|=..++..+-   +|..+-....-....++-.-  .........|.+++.+|...+      
T Consensus        92 ~~~~~~~~vh~~g~~i~~Ql~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~i~~ii~~f~~  171 (376)
T 1icp_A           92 AWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRV  171 (376)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             87789877523586478876415631234566678887545444567633346655568887843305559999999999


Q ss_pred             -HHHHHHHCCCEEEEE--------------CCCCCCCCCCH-----HHHHHHHHHHHHHHCCCCEEEE--ECCCCC----
Q ss_conf             -999997077518985--------------05445345325-----8999999999985335868998--154623----
Q gi|254780676|r  122 -SWAVRSMKLSHVVIT--------------SVDRDDLDDGG-----AQHFAEVISAIRESAPSTTIEV--LTPDFL----  175 (329)
Q Consensus       122 -A~av~~l~Lk~vViT--------------SV~RDDL~DgG-----A~hfa~~I~~Ir~~~P~~~IEv--LiPDf~----  175 (329)
                       |.-++..|...|-|-              +=.|+|-- ||     +....++|++||+..+...|-+  -.-|+.    
T Consensus       172 aA~~a~~AGfDgVeih~a~gyLl~qflsp~~N~R~D~y-GGslenR~r~~~eii~~ir~~~g~~~v~vr~~~~~~~~~~~  250 (376)
T 1icp_A          172 AARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKY-GGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAG  250 (376)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC
T ss_pred             HHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCC
T ss_conf             99999972988677300353104315378778646868-99566658999999999998659872689960222136788


Q ss_pred             C-CH---HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH
Q ss_conf             4-46---8999874107023320138300027563897035899999999997089167014048876420688999999
Q gi|254780676|r  176 R-KP---HALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMD  251 (329)
Q Consensus       176 G-~~---~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~  251 (329)
                      . ..   ...+.+.+++.|.+.--..+-.  .+...+..   ..++..+.+++...     --+++|-.-|.++..++  
T Consensus       251 ~~~e~~~~~~~~~e~~g~d~l~v~~~~~~--~~~~~~~~---~~~~~~~~i~~~~~-----~~v~~g~i~t~e~a~~~--  318 (376)
T 1icp_A          251 DTNPTALGLYMVESLNKYDLAYCHVVEPR--MKTAWEKI---ECTESLVPMRKAYK-----GTFIVAGGYDREDGNRA--  318 (376)
T ss_dssp             CSCHHHHHHHHHHHHGGGCCSEEEEECCS--CCC---------CCCCSHHHHHHCC-----SCEEEESSCCHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCC---CCHHHHHHHHHHCC-----CCEEEECCCCHHHHHHH--
T ss_conf             86289999999875457744678874487--66677754---32789999986358-----88899799898999999--


Q ss_pred             HHHHCCCCEEECCHHCC
Q ss_conf             99966993997502227
Q gi|254780676|r  252 DLRTADVDFLTMGQYLQ  268 (329)
Q Consensus       252 DLr~~gvdilTiGQYL~  268 (329)
                       |.+-+||.+-+|-.+-
T Consensus       319 -l~~g~~D~V~~gR~~l  334 (376)
T 1icp_A          319 -LIEDRADLVAYGRLFI  334 (376)
T ss_dssp             -HHTTSCSEEEESHHHH
T ss_pred             -HHCCCCCCHHHHHHHH
T ss_conf             -9869966416529988


No 118
>>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, duplication of the alpha-beta sandwichs. bacillus subtilis; 2.00A {Bacillus subtilis} (A:74-139)
Probab=36.30  E-value=31  Score=15.72  Aligned_cols=36  Identities=11%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             786100780002384699999999997496243404
Q gi|254780676|r  268 QPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSAS  303 (329)
Q Consensus       268 ~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~Sg  303 (329)
                      .||..||-|-=+-...++...-+--.++||..|.|-
T Consensus         1 APt~d~LLVfY~~~~~~~~~~~~rl~~aG~~~V~s~   36 (66)
T 1twu_A            1 VPHPDSLLVFYVPNAVELAAITSKLKHMGYQEVESE   36 (66)
T ss_dssp             CCCTTCEEEEECCCHHHHHHHHHHHHHTTCCEECCS
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCC
T ss_conf             013674588885767899999999987498775687


No 119
>>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} (A:)
Probab=36.06  E-value=32  Score=15.69  Aligned_cols=98  Identities=11%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             EEEEEECCCCCCC------------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf             6999866522353------------------5223446789988882357999999997077518985054453453258
Q gi|254780676|r   87 ATFMILGAICTRA------------------CTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA  148 (329)
Q Consensus        87 ATFMilG~~CTR~------------------C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA  148 (329)
                      -+++++||--|.+                  =.++-+..|.+..--.+...++...+...+-++|||..=.-|...+...
T Consensus         2 ~~i~~iGDSi~~g~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~d~vii~~G~Nd~~~~~~~   81 (190)
T 1ivn_A            2 DTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQP   81 (190)
T ss_dssp             EEEEEEECHHHHCSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCTTTTSSSCCH
T ss_pred             CEEEEEECHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCH
T ss_conf             98999966564287999667889999999648947995689988489999999987423799889883356640025447


Q ss_pred             H----HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             9----99999999985335868998154623446899987
Q gi|254780676|r  149 Q----HFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKV  184 (329)
Q Consensus       149 ~----hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v  184 (329)
                      .    .+.+.|+.+|+..|.+.+=...|-..-....++.+
T Consensus        82 ~~~~~~~~~~i~~~~~~~~~~vl~~~~~~~~~~~~~~~~~  121 (190)
T 1ivn_A           82 QQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAF  121 (190)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf             8999999999999997799089985147875116665579


No 120
>>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} (A:1-101,A:173-259,A:359-376)
Probab=35.99  E-value=32  Score=15.68  Aligned_cols=48  Identities=8%  Similarity=0.095  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCC---------------CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             235799999999707751898505445---------------345325899999999998533
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRD---------------DLDDGGAQHFAEVISAIRESA  162 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RD---------------DL~DgGA~hfa~~I~~Ir~~~  162 (329)
                      ...-.....-++.||..++-|+.+-.-               |-.=|+-.-|.+.|++.+++.
T Consensus        30 ~~gi~~~ldyl~~lGv~~i~L~Pi~~s~~~~~gY~~~d~~~i~~~~Gt~~df~~li~~ah~~G   92 (206)
T 1uok_A           30 LRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERN   92 (206)
T ss_dssp             HHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             999998269999759988997988579999989585467875713399999999999999888


No 121
>>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A (A:1-329)
Probab=35.97  E-value=32  Score=15.68  Aligned_cols=17  Identities=0%  Similarity=0.137  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             23579999999970775
Q gi|254780676|r  115 PQEPENISWAVRSMKLS  131 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk  131 (329)
                      .++=+++-++..+.|++
T Consensus        81 ~~~lk~LV~~aH~~Gi~   97 (329)
T 2dh2_A           81 KEDFDSLLQSAKKKSIR   97 (329)
T ss_dssp             HHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999850673


No 122
>>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} (A:124-242,A:299-500)
Probab=35.61  E-value=32  Score=15.64  Aligned_cols=56  Identities=13%  Similarity=0.092  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECC---------------------C--C-CCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             888235799999999707751898505---------------------4--4-534532589999999999853358689
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSV---------------------D--R-DDLDDGGAQHFAEVISAIRESAPSTTI  167 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV---------------------~--R-DDL~DgGA~hfa~~I~~Ir~~~P~~~I  167 (329)
                      -=..+|-+...+++.+.|++-++=--+                     |  | |-.+......+....+++++..|+..+
T Consensus        93 ~G~~~~~~~li~~~h~~gi~vi~D~v~~np~V~~~l~~~l~~Wie~GIDGFR~Da~~~~~~~~~~~~~~~~~~~~~~~~~  172 (321)
T 1wzl_A           93 FGDLPTFRRLVDEAHRRGIKIILDAVFENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALI  172 (321)
T ss_dssp             TCCHHHHHHHHHHHHTTTCEEEEEECCTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEE
T ss_conf             69989999999999868998999774250999999999742210148775310256510011110367888742874144


No 123
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=35.28  E-value=15  Score=18.07  Aligned_cols=81  Identities=20%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999998533586899815462344689998741070233201383000275638970358999999999970891670
Q gi|254780676|r  152 AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT  231 (329)
Q Consensus       152 a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T  231 (329)
                      .++|+.+++.  +..+-+++.|...-...+..-+  +          +...|..+.    =++.+.+++..+..+..+  
T Consensus        43 ~e~I~~L~~~--Gi~v~IiTGD~~~~a~~ia~~l--g----------I~~v~a~v~----p~~K~~iv~~L~~~g~~V--  102 (164)
T 2iye_A           43 KDYLEKLKNE--GLKIIILSGDKEDKVKELSKEL--N----------IQEYYSNLS----PEDKVRIIEKLKQNGNKV--  102 (164)
T ss_dssp             HHHHHHHHGG--GCEEEEECSSCHHHHHHHHHHH--T----------CSEEECSCC----HHHHHHHHHHHHHTTCCE--
T ss_pred             HHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHH--C----------HHHHHHCCC----HHHHHHHHHHHHCCCCEE--
T ss_conf             9999999975--9927982387421101479985--3----------025340235----788988884552256058--


Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf             140488764206889999999996699399
Q gi|254780676|r  232 KSGIMLGLGETRNEILQLMDDLRTADVDFL  261 (329)
Q Consensus       232 KSGlMvGLGEt~eEi~e~l~DLr~~gvdil  261 (329)
                         +|+|-|-.|-..      |+.++|-|-
T Consensus       103 ---a~VGDg~ND~~a------L~~AdVGIa  123 (164)
T 2iye_A          103 ---LMIGDGVNDAAA------LALADVSVA  123 (164)
T ss_dssp             ---EEEECSTTTHHH------HHHSSEEEE
T ss_pred             ---EEEECCCCHHHH------HHHCCEEEE
T ss_conf             ---999423104668------864879998


No 124
>>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} (A:)
Probab=35.17  E-value=33  Score=15.59  Aligned_cols=212  Identities=15%  Similarity=0.079  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHC-CCCEEECCCCCCCHHHHHCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             89999999974-9823652578878767508972-699986652235352234467899888823579999999970775
Q gi|254780676|r   54 YKETYNILRSR-NLTTVCEEAGCPNIGECWNKNH-ATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS  131 (329)
Q Consensus        54 ~~~~~~~l~~~-~L~TVCeeA~CPNi~ECw~~gt-ATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk  131 (329)
                      +..+++++..+ ..-.+|.++.  .+-+++..|. |-+|-+             .-+.|..-|++    .-+....||++
T Consensus        99 i~~~~~~~~~~~~~~~~~~s~~--di~~~~~~gk~av~l~i-------------Ega~~l~~dl~----~L~~~~~lGvR  159 (417)
T 3b40_A           99 YKILTGMVRDFPNQVGIAYSPE--DFRRLAMEGKFAIVMSM-------------LNAYPLGDDLS----QLDKWAARGVR  159 (417)
T ss_dssp             HHHHHHHHHHCTTTEEECSSHH--HHHHHHHTTCEEEEEEE-------------ECSGGGTTCTH----HHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCEEECCCHH--HHHHHHHCCCCEEEEEE-------------CCCCCCCCCHH----HHHHHHHHHCE
T ss_conf             9999999996854378528799--99998754564467851-------------04311366367----79999985013


Q ss_pred             EEEEECCCCCCCCCC---------------HHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-CCCHHHHH
Q ss_conf             189850544534532---------------58999-99999998533586899815462344689998741-07023320
Q gi|254780676|r  132 HVVITSVDRDDLDDG---------------GAQHF-AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS-AKPDVFNH  194 (329)
Q Consensus       132 ~vViTSV~RDDL~Dg---------------GA~hf-a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~-A~pdV~nH  194 (329)
                      |+-+|--.+-.+.||               |=..| .+.|+++-++  ++.|++-=-   +..-.++.+-- ..|-|++|
T Consensus       160 ~i~lthn~~N~~a~g~~~~~~~~~~~~~~~GLT~~G~~~V~~mn~l--GiiIDiSH~---s~~t~~dvl~~s~~Pvi~SH  234 (417)
T 3b40_A          160 MFGFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDL--GVIIDVSQM---STKALEQVAALSRAPIVASH  234 (417)
T ss_dssp             EEECCSSSCCSSBCBSSCCGGGTCCTTTTSSBCHHHHHHHHHHHHH--TCEEECTTB---CHHHHHHHHHHCSSCEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CEEECCCCC---CHHHHHHHHHCCCCCEEECC
T ss_conf             7865753788126777776557876424577540219999986506--823216766---28899998750466632214


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-------E------CHHHHHHHHHHHHH-CCCCE
Q ss_conf             1383000275638970358999999999970891670140488764-------2------06889999999996-69939
Q gi|254780676|r  195 NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-------E------TRNEILQLMDDLRT-ADVDF  260 (329)
Q Consensus       195 NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-------E------t~eEi~e~l~DLr~-~gvdi  260 (329)
                      -  .++.+++.-|--.+     +.|+.+.+        +|.++|+-       +      |.+++++.+..+.+ .|.|.
T Consensus       235 s--~~ral~~h~RNl~D-----e~ir~ia~--------~GGvIgi~~~~~fl~~~~~~~~t~~~~~~hi~~~~~~~G~dh  299 (417)
T 3b40_A          235 S--APRALVDIKRNLSD-----HEMQLIKD--------SGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLPPLEGLDY  299 (417)
T ss_dssp             E--CBTTTSCCTTSBCH-----HHHHHHHH--------TTCEEEEECCHHHHSCCCHHHHHHHHHHHHHTTCCCCCSSTT
T ss_pred             C--CHHHHCCCCCCCCH-----HHHHHHHH--------CCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf             0--45652774346789-----99999997--------498899953467526776442346888887630132000012


Q ss_pred             EECCHHCCCCC---------------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             97502227861---------------007800023846999999999974962434048
Q gi|254780676|r  261 LTMGQYLQPTR---------------KHHKVESFVTPQDFKSYETIAYSKGFLMVSASP  304 (329)
Q Consensus       261 lTiGQYL~Ps~---------------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgP  304 (329)
                      +-||-=.-...               ......+.++.++++.+--...-.|+.++..++
T Consensus       300 vgiGsD~dg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~~~n~l~~~~~~g~~s  358 (417)
T 3b40_A          300 ALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGIDHVGISS  358 (417)
T ss_dssp             TSSCCCGGGGGSCHHHHHHHHHHHHHHHHTSCCCBHHHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             10244420000056677787776543202478999999999999999963898436476


No 125
>>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} (A:)
Probab=34.79  E-value=33  Score=15.55  Aligned_cols=88  Identities=19%  Similarity=0.287  Sum_probs=59.3

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCC--C-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHH
Q ss_conf             998-888235799999999707751898505445--3-45325899999999998533586899815462--34468999
Q gi|254780676|r  109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRD--D-LDDGGAQHFAEVISAIRESAPSTTIEVLTPDF--LRKPHALE  182 (329)
Q Consensus       109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RD--D-L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf--~G~~~al~  182 (329)
                      +|. |+-|+|-..-|.+..+-|-.-+=+-  .||  | -+..-+..|+++|.+||+.+|. .|-+-+.--  ....+.+.
T Consensus        24 ~P~lP~TpeEia~~a~~c~~AGAsivHlH--~Rd~~dG~~s~d~~~y~eii~~IR~~~d~-ii~~TTgg~~~~~~e~r~~  100 (311)
T 3e49_A           24 SPYLPVTPDEVAQASIGAAEAGAAVIHLH--ARDPRDGRPTQDPAAFAEFLPRIKSNTDA-VINLTTGGSPHXTVEERLR  100 (311)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHHTCSEEEEC--EECTTTCCEECCHHHHTTHHHHHHHHCCC-EEEECSCSCTTSCHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCCCCCCHHHHHH
T ss_conf             99998998999999999998187389977--35777799078999999999999860896-3540357888886677778


Q ss_pred             HHHHCCCHHHHHCCCCC
Q ss_conf             87410702332013830
Q gi|254780676|r  183 KVVSAKPDVFNHNLETV  199 (329)
Q Consensus       183 ~v~~A~pdV~nHNiETV  199 (329)
                      .+.+.+||.-.=|+-++
T Consensus       101 ~v~~~~Pd~aS~~~gs~  117 (311)
T 3e49_A          101 PATHYXPELASLNXGSX  117 (311)
T ss_dssp             HHHHHCCSEEEEECSCE
T ss_pred             HHHHHCCCEEECCCCCC
T ss_conf             89874202331233566


No 126
>>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} (A:85-308,A:364-491)
Probab=34.59  E-value=33  Score=15.53  Aligned_cols=26  Identities=12%  Similarity=0.300  Sum_probs=11.9

Q ss_pred             ECCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             404830-01031899999999998541
Q gi|254780676|r  301 SASPLT-RSSYHAGDDFLRLKNNRRQH  326 (329)
Q Consensus       301 ~SgPlV-RSSY~A~e~~~~~~~~~~~~  326 (329)
                      ++.|+. =+|++-.|.-..+++.|++.
T Consensus       282 ~~~p~~~f~~~~~~~l~~~~~~~r~~~  308 (352)
T 1eh9_A          282 EENPFYFFSDFSDSKLIQGVREGRKKE  308 (352)
T ss_dssp             CCCCCCCCCCCCSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             998886510017787765435530566


No 127
>>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer, alpha-beta barrel; 2.50A {Thermoanaerobacter thermosulfurogenes} (A:)
Probab=34.43  E-value=33  Score=15.55  Aligned_cols=199  Identities=11%  Similarity=0.024  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHCCCCEEECCCC-------------------CCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899999999749823652578-------------------8787675089726999866522353522344678998888
Q gi|254780676|r   54 YKETYNILRSRNLTTVCEEAG-------------------CPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLD  114 (329)
Q Consensus        54 ~~~~~~~l~~~~L~TVCeeA~-------------------CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D  114 (329)
                      ....-..+.+.+.+.|+=...                   ...+-+.-...--+...++..+.-.-.+.   .+....+|
T Consensus        82 ~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~i~~~~~~~~~~~~~~---~~~~~~~d  158 (438)
T 1a0c_A           82 VEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFV---HGASTSCN  158 (438)
T ss_dssp             HHHHHHHHHHHTCSEEEEEHHHHSCCCSSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGT---TCSTTCSC
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCEE---CCCCCCCC
T ss_conf             999999998718845760343348887747888999999999999988742970001126623211000---47666969


Q ss_pred             HH-------HHHHHHHHHHHHCCCEEEEECCCCCCCCCC------HHHHHHHHHHHH----HHHCCCCEEEEECCCC---
Q ss_conf             23-------579999999970775189850544534532------589999999999----8533586899815462---
Q gi|254780676|r  115 PQ-------EPENISWAVRSMKLSHVVITSVDRDDLDDG------GAQHFAEVISAI----RESAPSTTIEVLTPDF---  174 (329)
Q Consensus       115 ~~-------EP~rvA~av~~l~Lk~vViTSV~RDDL~Dg------GA~hfa~~I~~I----r~~~P~~~IEvLiPDf---  174 (329)
                      +.       .-.+..+..+.||.+++++-+-..+...+.      +-..+++.++++    .+....+.+|.....+   
T Consensus       159 ~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~~~i~~e~~~~~~~  238 (438)
T 1a0c_A          159 ADVFAYSAAQVKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPT  238 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCCSCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             89999999999999999998299889977887655676658999999999999999999877438770598724899876


Q ss_pred             ----CCCH-HHHHHHHH-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-------CCCEEEEEEE
Q ss_conf             ----3446-89998741-070233201383000275638970358999999999970891670-------1404887642
Q gi|254780676|r  175 ----LRKP-HALEKVVS-AKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFT-------KSGIMLGLGE  241 (329)
Q Consensus       175 ----~G~~-~al~~v~~-A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~T-------KSGlMvGLGE  241 (329)
                          .+.. +.++.+.+ ..+..+.=|++|    ......+.+....++.+....... .+..       -...+++.|+
T Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~gl~lD~----gH~~~~g~d~~~~~~~l~~~~ri~-~vHl~D~~~~~~~~~~~~~g~  313 (438)
T 1a0c_A          239 KHQYDFDVANVLAFLRKYDLDKYFKVNIEA----NHATLAFHDFQHELRYARINGVLG-SIDANTGDMLLGWDTDQFPTD  313 (438)
T ss_dssp             SEESSCSHHHHHHHHHHTTCTTTEEEEEEH----HHHHHTTCCHHHHHHHHHHTTCEE-EEECCBCCTTSBSCCCBCCCC
T ss_pred             CCEECCCHHHHHHHHHHHCCHHHEEECCCC----CCCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCCCCCCCCCCCC
T ss_conf             546548789999999983880435333323----401127899799999999779968-786589886778887838885


Q ss_pred             CHHHHHHHHHHHHHCCCCE
Q ss_conf             0688999999999669939
Q gi|254780676|r  242 TRNEILQLMDDLRTADVDF  260 (329)
Q Consensus       242 t~eEi~e~l~DLr~~gvdi  260 (329)
                      -..+....+.-|++.|-+-
T Consensus       314 G~id~~~~~~~l~~~gy~g  332 (438)
T 1a0c_A          314 IRMTTLAMYEVIKMGGFDK  332 (438)
T ss_dssp             HHHHHHHHHHHHHTTSCSS
T ss_pred             HHHHHHHHHHHHHHCCCCC
T ss_conf             2999999999999569787


No 128
>>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} (A:1-337)
Probab=34.35  E-value=33  Score=15.51  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=13.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             53258999999999985335868998
Q gi|254780676|r  144 DDGGAQHFAEVISAIRESAPSTTIEV  169 (329)
Q Consensus       144 ~DgGA~hfa~~I~~Ir~~~P~~~IEv  169 (329)
                      .-|+-.-|.+-|++.+++.-.+.+.+
T Consensus        88 ~~Gt~~d~~~lv~~~H~~Gi~vi~D~  113 (337)
T 1gcy_A           88 RYGSDAQLRQAASALGGAGVKVLYDV  113 (337)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             78999999999999988799899987


No 129
>>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} (A:)
Probab=34.06  E-value=34  Score=15.47  Aligned_cols=139  Identities=9%  Similarity=-0.019  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEC--CCCCCC-CCCHHHHHHHHH----HHHHHHCCCCEEEEECCCCCC------CHHHHH
Q ss_conf             3579999999970775189850--544534-532589999999----999853358689981546234------468999
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITS--VDRDDL-DDGGAQHFAEVI----SAIRESAPSTTIEVLTPDFLR------KPHALE  182 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTS--V~RDDL-~DgGA~hfa~~I----~~Ir~~~P~~~IEvLiPDf~G------~~~al~  182 (329)
                      +.-.+..+.++.||.+++++..  ...... .+..-..+++.+    +..++..-...+|..-+.+..      ...++.
T Consensus        84 ~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gi~l~iE~~~~~~~~~~~~~~~~~~~~  163 (284)
T 3ju2_A           84 DDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQAL  163 (284)
T ss_dssp             HHHHHHHHHHHHHTBSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999989999968984213331024678999999999999999999998750400110356564668721201699999


Q ss_pred             HHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC---------CEEEEEEECHHHHHHHHHHH
Q ss_conf             874107023320138300027563897035899999999997089167014---------04887642068899999999
Q gi|254780676|r  183 KVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKS---------GIMLGLGETRNEILQLMDDL  253 (329)
Q Consensus       183 ~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKS---------GlMvGLGEt~eEi~e~l~DL  253 (329)
                      .+.+.+.+-+.-++.+    +...+-+.+....+  ++..+..-..+.-|-         +-.+-+|+-.-+....++.|
T Consensus       164 ~~~~~~~~~vg~~~D~----~h~~~~g~~~~~~~--~~~~~~~i~~vHi~D~~~~~~~~~~~~~~~G~G~id~~~~~~~L  237 (284)
T 3ju2_A          164 DICETLGPGVGVAIDV----YHVWWDPDLANQIA--RAGKMKAILAHHICDWLVPTKDMLTDRGMMGDGVIDLKGIRRRI  237 (284)
T ss_dssp             HHHHHHCTTEEEEEEH----HHHTTCTTHHHHHH--HHHHTTCEEEEEECBCCSSCCCSSSBCBCTTSSSCCHHHHHHHH
T ss_pred             HHHHHCCCCEEEEECC----HHHHHCCCCHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             8887427600355320----25541799689999--86413558999963566655334567778988314899999999


Q ss_pred             HHCCCCE
Q ss_conf             9669939
Q gi|254780676|r  254 RTADVDF  260 (329)
Q Consensus       254 r~~gvdi  260 (329)
                      ++.|.+.
T Consensus       238 ~~~gy~g  244 (284)
T 3ju2_A          238 EAAGFHG  244 (284)
T ss_dssp             HHTTCCC
T ss_pred             HHHCCCE
T ss_conf             9819964


No 130
>>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:1-29,A:321-389)
Probab=34.02  E-value=13  Score=18.33  Aligned_cols=38  Identities=24%  Similarity=0.607  Sum_probs=32.9

Q ss_pred             CCHHHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             787675089726999--86652235352234467899888
Q gi|254780676|r   76 PNIGECWNKNHATFM--ILGAICTRACTFCNVATGKPQPL  113 (329)
Q Consensus        76 PNi~ECw~~gtATFM--ilG~~CTR~C~FC~V~~G~P~~~  113 (329)
                      --|||=||+-...|+  +-|.-|.|.|=+--.-.|+|+.-
T Consensus        25 ~r~genWSGYSGsFv~~~~g~~Ci~pCFyVELIRGrPkE~   64 (98)
T 1v0z_A           25 IRIGENWSGYSGAFIDYWANKECFNPCFYVELIRGRPKES   64 (98)
T ss_dssp             HHHHTEECCCEEEEECTTSSSSSBCEEEEEEEEEETTTCT
T ss_pred             EEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCC
T ss_conf             6862888754137156761787642017999961788656


No 131
>>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} (A:1-130,A:202-404)
Probab=33.80  E-value=34  Score=15.45  Aligned_cols=19  Identities=0%  Similarity=-0.121  Sum_probs=10.5

Q ss_pred             CHHHHHHHHHHHHHHCCCE
Q ss_conf             8235799999999707751
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSH  132 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~  132 (329)
                      +.+|-+.+.++..+.|++-
T Consensus       106 ~~~~~~~lv~~~h~~gi~v  124 (333)
T 1qho_A          106 NWTTFDTLVNDAHQNGIKV  124 (333)
T ss_dssp             CHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHHHCCCEE
T ss_conf             9999999999999879999


No 132
>>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} (A:1-13,A:253-347)
Probab=33.71  E-value=34  Score=15.44  Aligned_cols=51  Identities=12%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCH---HCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             404887642068899999999966993997502---2278610078000238469999999
Q gi|254780676|r  233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQ---YLQPTRKHHKVESFVTPQDFKSYET  290 (329)
Q Consensus       233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQ---YL~Ps~~h~pV~ryv~P~eF~~~~~  290 (329)
                      .|+|+|+....+.-......+++.|+-+...|.   ++.|...+       +.++.++.=+
T Consensus        45 ~Gl~~~ie~~~~~a~~i~~~l~~~Gi~v~~~g~~~iRl~Ppl~i-------t~eeid~~l~   98 (108)
T 1jg8_A           45 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDV-------SRNDIEEALN   98 (108)
T ss_dssp             SEEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTS-------CHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CHHHHHHHHH
T ss_conf             59999817975319999999997899895179898999889999-------9999999999


No 133
>>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} (A:36-342)
Probab=33.63  E-value=34  Score=15.43  Aligned_cols=193  Identities=15%  Similarity=0.077  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCCCH-------HHHHHHHHHHHHHHCCCCEEEE---ECCCC--------
Q ss_conf             823579999999970775189850544-5345325-------8999999999985335868998---15462--------
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDR-DDLDDGG-------AQHFAEVISAIRESAPSTTIEV---LTPDF--------  174 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~R-DDL~DgG-------A~hfa~~I~~Ir~~~P~~~IEv---LiPDf--------  174 (329)
                      -.++-.+.++-...+|++.|.+-.|.- .+++|.-       -+...+.|++||+..|+..|=+   |.|=-        
T Consensus        32 sid~l~~~~~~~~~~Gi~~v~lFgv~~~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~ii~Dvclc~YT~hGHcGil  111 (307)
T 1h7n_A           32 GVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVL  111 (307)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCB
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             89999999999998699979966878874334778835428766899999999813887089964356867788871235


Q ss_pred             --CC---CHHHHHHH-------HHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH--------------------
Q ss_conf             --34---46899987-------41070233201383000275638970358999999999--------------------
Q gi|254780676|r  175 --LR---KPHALEKV-------VSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRV--------------------  222 (329)
Q Consensus       175 --~G---~~~al~~v-------~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~a--------------------  222 (329)
                        .|   |...|+.+       .+||.|+++              |..--+-+...+|.+                    
T Consensus       112 ~~~g~idNd~Tl~~la~~Al~~A~AGaDiVA--------------PSdMMDGrV~aIR~aLd~~g~~~~v~ImSYsaKya  177 (307)
T 1h7n_A          112 YDDGTINRERSVSRLAAVAVNYAKAGAHCVA--------------PSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFS  177 (307)
T ss_dssp             CTTSSBCHHHHHHHHHHHHHHHHHHTCSEEE--------------ECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEC--------------CCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHC
T ss_conf             5987547099999999999999981898650--------------00466888999999999837986651210234330


Q ss_pred             ----------HHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCC---CC-CC--CCCCCCCCCHH
Q ss_conf             ----------97089167014048876420688999999999669939975---02227---86-10--07800023846
Q gi|254780676|r  223 ----------KELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQ---PT-RK--HHKVESFVTPQ  283 (329)
Q Consensus       223 ----------K~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~---Ps-~~--h~pV~ryv~P~  283 (329)
                                -...|..--|++--+--+-..|-+.++..|+.+ |.|+|-+   .-||-   -- .+  .+||.-|---.
T Consensus       178 S~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~E-GAD~iMVKPal~YLDii~~~k~~~~~~Pv~aYqVSG  256 (307)
T 1h7n_A          178 GNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSE-GADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSG  256 (307)
T ss_dssp             SSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHHHHHHHT-TCSEEEEESSGGGHHHHHHHHHHTTTSCEEEEECHH
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             1245558999750325788761127999879999999961764-997698547723899999999856799869997207


Q ss_pred             HHHHHHHHHHH--CCCCEE---------ECCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999997--496243---------404830010318999999999
Q gi|254780676|r  284 DFKSYETIAYS--KGFLMV---------SASPLTRSSYHAGDDFLRLKN  321 (329)
Q Consensus       284 eF~~~~~~a~~--~Gf~~V---------~SgPlVRSSY~A~e~~~~~~~  321 (329)
                      ||..++.-|..  +-.+.+         .+|-=.=-+|+|.+...-+.+
T Consensus       257 EYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L~~  305 (307)
T 1h7n_A          257 EYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE  305 (307)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETTHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
T ss_conf             8999999998699758889999999998608988986039999998754


No 134
>>2ka6_B Signal transducer and activator of transcription 1-alpha/beta; CBP/P300, TAZ2, STAT1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens} (B:)
Probab=33.01  E-value=26  Score=16.29  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             278610078000238469999999999749624340
Q gi|254780676|r  267 LQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVSA  302 (329)
Q Consensus       267 L~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~S  302 (329)
                      ||-+.+-+|.    +|++|++++++--..-|..|.|
T Consensus        12 LQ~~dNllPM----SPdef~e~~r~Vgp~e~d~vm~   43 (45)
T 2ka6_B           12 LQTTDNLLPM----SPEEFDEVSRIVGSVEFDSMMN   43 (45)
T ss_dssp             CCSTTSCCCS----CHHHHHHHHHHHTTTTGGGTTT
T ss_pred             HCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHH
T ss_conf             2563346778----8889999998707398998985


No 135
>>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} (A:)
Probab=32.68  E-value=36  Score=15.32  Aligned_cols=36  Identities=11%  Similarity=-0.009  Sum_probs=20.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf             882357999999997077518985054453453258
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA  148 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA  148 (329)
                      ....|-...|+.++.+|...++++...-=.+.+.+.
T Consensus        86 ~s~~~~i~~a~~a~~~Gad~v~v~pP~~~~~~~~~i  121 (297)
T 3flu_A           86 NNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGI  121 (297)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
T ss_conf             329999999999998098854733787889899999


No 136
>>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} (A:)
Probab=32.67  E-value=36  Score=15.32  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             5445345325899999999998533586899815
Q gi|254780676|r  138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT  171 (329)
Q Consensus       138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi  171 (329)
                      -+|||+-..-+..+.+.+++|++.+|+..+=+.+
T Consensus        91 ~~r~d~~~~n~~i~~~i~~~i~~~~p~~~~ivvs  124 (319)
T 1lld_A           91 QSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  124 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8867876666999999999886428873999738


No 137
>>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:1-70,A:167-346)
Probab=32.58  E-value=36  Score=15.31  Aligned_cols=163  Identities=15%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCC--------CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf             54453453258999999999985335868998-1546234--------46899987410702332013830002756389
Q gi|254780676|r  138 VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV-LTPDFLR--------KPHALEKVVSAKPDVFNHNLETVASNYLMVRP  208 (329)
Q Consensus       138 V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G--------~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp  208 (329)
                      |.|=++..|...-+.+.++.||+........+ +.-|.+|        +.+.|+.++..++|.+.-         +.|+.
T Consensus        30 ~~R~N~sh~~~~~~~~~~~~~r~~~~~~~~~~~i~~dl~Gpl~~lT~~d~~Dl~~~~~~~vD~I~l---------pkV~s  100 (250)
T 1e0t_A           30 VMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPLPALAEKDKQDLIFGCEQGVDFVAA---------SFIRK  100 (250)
T ss_dssp             EEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCCSSCHHHHHHHHHHHHHTCSEEEE---------SSCCS
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE---------CCCCC
T ss_conf             999988999999999999999999997099769999688988899988999999998749999998---------78799


Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEE-----------------CCCEEEEEEECHHH--------HHHHH-HHHHHCCCCEEE
Q ss_conf             70358999999999970891670-----------------14048876420688--------99999-999966993997
Q gi|254780676|r  209 GARYFHSLRLLQRVKELDPLIFT-----------------KSGIMLGLGETRNE--------ILQLM-DDLRTADVDFLT  262 (329)
Q Consensus       209 ~a~Y~rSL~vL~~aK~~~~~i~T-----------------KSGlMvGLGEt~eE--------i~e~l-~DLr~~gvdilT  262 (329)
                      ..+-+.=-++|+.....+..|..                 --|+|+|-|.---|        +.+.+ .--+.++.-.++
T Consensus       101 a~dI~~v~~~l~~~g~~~~~IiakIEt~~gv~nl~eI~~~sdgi~igrgDL~~~l~~e~~~~~q~~ii~~~~~~~~~~~~  180 (250)
T 1e0t_A          101 RSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT  180 (250)
T ss_dssp             HHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999999870799871899865987876799999756789997687545579888599999999999984998899


Q ss_pred             CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-CCCCCCCCHHHHH
Q ss_conf             502227861007800023846999999999974962434-0483001031899
Q gi|254780676|r  263 MGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMVS-ASPLTRSSYHAGD  314 (329)
Q Consensus       263 iGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~-SgPlVRSSY~A~e  314 (329)
                      -.|.|.-     +...+.+.+-|...-..|..+||..+. ++|=--..|-.++
T Consensus       181 ~t~~lds-----m~~~~~~t~ae~~dv~~a~~~G~dg~~lihptqig~~p~e~  228 (250)
T 1e0t_A          181 ATMMLDS-----MIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEA  228 (250)
T ss_dssp             ECC--------------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHH
T ss_pred             ECCCHHH-----HHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
T ss_conf             6810776-----62189996188888999987279789977874587588999


No 138
>>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} (A:1-344)
Probab=32.10  E-value=36  Score=15.26  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=12.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3258999999999985335868998
Q gi|254780676|r  145 DGGAQHFAEVISAIRESAPSTTIEV  169 (329)
Q Consensus       145 DgGA~hfa~~I~~Ir~~~P~~~IEv  169 (329)
                      =|+.+-|.+-|++.++..=.+.+.+
T Consensus        71 ~Gt~~~fk~Lv~~~H~~Gi~VilD~   95 (344)
T 1ua7_A           71 LGTEQEFKEMCAAAEEYGIKVIVDA   95 (344)
T ss_dssp             TEEHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8999999999999865688799985


No 139
>>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} (A:1-343)
Probab=32.01  E-value=36  Score=15.25  Aligned_cols=150  Identities=11%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             CCCCCHHHHH-------HHHHHHHHHCCCEEEEE--------------CCCCCCCCCCH-----HHHHHHHHHHHHHHCC
Q ss_conf             9888823579-------99999997077518985--------------05445345325-----8999999999985335
Q gi|254780676|r  110 PQPLDPQEPE-------NISWAVRSMKLSHVVIT--------------SVDRDDLDDGG-----AQHFAEVISAIRESAP  163 (329)
Q Consensus       110 P~~~D~~EP~-------rvA~av~~l~Lk~vViT--------------SV~RDDL~DgG-----A~hfa~~I~~Ir~~~P  163 (329)
                      |.++...|-.       +-|..+++.|..-|-|-              +-.|.|-- ||     +....++|++||+..+
T Consensus       136 ~~~l~~~~i~~i~~~f~~aA~~a~~aG~DgVei~~~~g~L~~qFlsp~~n~r~d~y-Ggsl~nr~r~~~eii~air~~~~  214 (343)
T 1o94_A          136 CKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKY-GGSLENRARFWLETLEKVKHAVG  214 (343)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTT-SSSHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             86699999999999999999999970978899731756568864076378996435-78856651789999998885508


Q ss_pred             -CCEEEEEC--CCCC--C------CHHHHHHHHHCCCHHHHHCCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHCCCEEE
Q ss_conf             -86899815--4623--4------468999874107023320138300-02756389-7035899999999997089167
Q gi|254780676|r  164 -STTIEVLT--PDFL--R------KPHALEKVVSAKPDVFNHNLETVA-SNYLMVRP-GARYFHSLRLLQRVKELDPLIF  230 (329)
Q Consensus       164 -~~~IEvLi--PDf~--G------~~~al~~v~~A~pdV~nHNiETV~-rLy~~VRp-~a~Y~rSL~vL~~aK~~~~~i~  230 (329)
                       ...|-+-+  .|..  |      -.+..+.+.+++.|.+.--.-+.. +-.....+ ......-+++.+.+|.....-+
T Consensus       215 ~~~~V~iR~~~~d~~~~g~~~~e~~~~~~~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pv  294 (343)
T 1o94_A          215 SDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPV  294 (343)
T ss_dssp             TTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             98658999743005589977566778999999984444424134652232335566545664444047999876417852


Q ss_pred             ECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             0140488764206889999999996699399750222
Q gi|254780676|r  231 TKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       231 TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                          ++.|---+.++..++   |.+-+||++-+|.-+
T Consensus       295 ----i~~G~i~s~~~~~~~---l~~g~~D~V~~gR~~  324 (343)
T 1o94_A          295 ----LGVGRYTDPEKMIEI---VTKGYADIIGCARPS  324 (343)
T ss_dssp             ----ECCSCCCCHHHHHHH---HHTTSCSBEEESHHH
T ss_pred             ----CCCCCCCCHHHHHHH---HHCCCCCEEECCHHH
T ss_conf             ----145896899999999---987998746305698


No 140
>>1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e} (A:)
Probab=31.97  E-value=36  Score=15.24  Aligned_cols=55  Identities=15%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             CCEEEEEE---------ECHHHHHHHHHHHH-HCCCCEEECCHHCCCC--CCCCCCCCCCCHHH-HHHHHHH
Q ss_conf             40488764---------20688999999999-6699399750222786--10078000238469-9999999
Q gi|254780676|r  233 SGIMLGLG---------ETRNEILQLMDDLR-TADVDFLTMGQYLQPT--RKHHKVESFVTPQD-FKSYETI  291 (329)
Q Consensus       233 SGlMvGLG---------Et~eEi~e~l~DLr-~~gvdilTiGQYL~Ps--~~h~pV~ryv~P~e-F~~~~~~  291 (329)
                      ++-.+++|         |+.|++.+.++.+. .++.+.+-    +.|+  -.|.|...+.+++. ++.++..
T Consensus       290 ~~k~l~~GvVd~r~~~~e~~e~~~~~i~~~~~~~~~~~~~----vsp~Cgl~~~p~~~~l~~~~a~~KL~~~  357 (375)
T 1ypx_A          290 PDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLR----LSPQCGFASTEEGNILTEEEQWDKLRYV  357 (375)
T ss_dssp             TTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEE----EEESSCCC--------CHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHEE----EECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             8829997688689897699999999999999838887799----8278898877667889999999999999


No 141
>>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387)
Probab=31.63  E-value=37  Score=15.20  Aligned_cols=129  Identities=10%  Similarity=0.066  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--EE-CCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             35799999999707751898505445345325899999999998533586899--81-5462344689998741070233
Q gi|254780676|r  116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIE--VL-TPDFLRKPHALEKVVSAKPDVF  192 (329)
Q Consensus       116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IE--vL-iPDf~G~~~al~~v~~A~pdV~  192 (329)
                      ....-+++.++.++.+.|+|-..|    .+.|-+......+.+.+....+.+.  +- -+...--...+.++.+++||++
T Consensus         4 ~qa~ala~~l~~~g~kkVaII~~d----~~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~~~~~d~~~~i~kik~a~pdvV   79 (200)
T 3i45_A            4 MQAAMLAAEAAKLPITRWATIAPN----YEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGL   79 (200)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCS----SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEE
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf             899999999886287178544789----6788999998887775236613688766402665116789888886098389


Q ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             201383000275638970358999999999970891670140488764206889999999996699399750222
Q gi|254780676|r  193 NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       193 nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      =.              .........+++.+++.|.  .-+.-++.+.+=..+++.....+   ..-.++.+..|.
T Consensus        80 i~--------------~~~~~~a~~~ikqa~~~Gl--~~~~~ii~~~~~~~~~l~~~~g~---a~eGvi~~~~~~  135 (200)
T 3i45_A           80 FN--------------VLFGADLPKFVREGRVRGL--FAGRQVVSMLTGEPEYLNPLKDE---APEGWIVTGYPW  135 (200)
T ss_dssp             EE--------------CCCTTHHHHHHHHHHHHTS--STTCEEEEEEEESHHHHGGGGGG---CCSSCEEEECCG
T ss_pred             EE--------------EECCHHHHHHHHHHHHHCC--CCCCCEEEECCCCHHHHHHHHHH---HCCCCEEEEECC
T ss_conf             99--------------9333789999999998188--76760343024570443321112---126857973156


No 142
>>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:1-110,A:153-365)
Probab=31.62  E-value=37  Score=15.20  Aligned_cols=85  Identities=9%  Similarity=-0.054  Sum_probs=41.4

Q ss_pred             HHHHHHHHCCCHHHHHCCCC--------CCCCCCCCCC---CCHHHHH----HHHHHHHHHCCCE----EEECCCEEEEE
Q ss_conf             89998741070233201383--------0002756389---7035899----9999999970891----67014048876
Q gi|254780676|r  179 HALEKVVSAKPDVFNHNLET--------VASNYLMVRP---GARYFHS----LRLLQRVKELDPL----IFTKSGIMLGL  239 (329)
Q Consensus       179 ~al~~v~~A~pdV~nHNiET--------V~rLy~~VRp---~a~Y~rS----L~vL~~aK~~~~~----i~TKSGlMvGL  239 (329)
                      .+.+...++|-|.+.=|.--        .|  ...+|.   +++..+.    +++++.+++.-+.    +.-..-.-++-
T Consensus       123 ~AA~~a~~aGfDgVeIn~ghgyL~~qFlcP--~~n~r~d~yGgsl~~r~r~~~eii~avr~~v~~~~v~vris~~~~~~~  200 (323)
T 2gou_A          123 QAALNAMEAGFDGIELHAANGYLINQFIDS--EANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNG  200 (323)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSG--GGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTS
T ss_pred             HHHHHHHHCCCCEEEEEECCCHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC
T ss_conf             999999982998899814604489998887--647776545640556678999998888864388665405214123479


Q ss_pred             EECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf             42068899999999966993997502
Q gi|254780676|r  240 GETRNEILQLMDDLRTADVDFLTMGQ  265 (329)
Q Consensus       240 GEt~eEi~e~l~DLr~~gvdilTiGQ  265 (329)
                      |.+.+|..+.+.-|.+.|+|.|++.-
T Consensus       201 ~~~~~e~~~~~~~l~~~g~d~i~v~~  226 (323)
T 2gou_A          201 TVDADPILTYTAAAALLNKHRIVYLH  226 (323)
T ss_dssp             CCCSSHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             76553056778999876415840785


No 143
>>3e02_A Uncharacterized protein DUF849; YP_555544.1, protein of unknown function (DUF849), structural genomics; HET: MSE; 1.90A {Burkholderia xenovorans LB400} (A:)
Probab=31.43  E-value=37  Score=15.18  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=90.1

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHH
Q ss_conf             998-8882357999999997077518985054453---4532589999999999853358689981546234---46899
Q gi|254780676|r  109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD---LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHAL  181 (329)
Q Consensus       109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD---L~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al  181 (329)
                      +|. |+-|+|-..-|.+..+-|-.-|=+  -.||+   -+..-+..|+++|.+||+.+|.+ |-+ +-...+   -.+.+
T Consensus        24 ~P~lP~TpeEia~~a~~c~~AGAsivHl--H~Rd~~dG~~s~d~~~y~e~i~~IR~~~~~i-i~~-Ttg~~~~~~~~~R~   99 (311)
T 3e02_A           24 SPYLPITPEEIVKEGVAAAEAGAAXLHL--HARDPLNGRPSQDPDLFXRFLPQLKERTDAI-LNI-TTGGGLGXSLDERL   99 (311)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHHTCSEEEE--CEECTTTCCEECCHHHHTTTHHHHHHHCCCE-EEE-CSSCSTTCCHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEE-ECCCCCCCCCHHHH
T ss_conf             9999899899999999999828748998--8558989890689999999999999759935-875-21577887620246


Q ss_pred             HHHHHCCCHHHHHCCCCCCCCC-CCCCC-----------------CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECH
Q ss_conf             9874107023320138300027-56389-----------------70358999999999970891670140488764206
Q gi|254780676|r  182 EKVVSAKPDVFNHNLETVASNY-LMVRP-----------------GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETR  243 (329)
Q Consensus       182 ~~v~~A~pdV~nHNiETV~rLy-~~VRp-----------------~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~  243 (329)
                      ..|..-+||.-.=|+-++---. ...+.                 ..-|..+.+.+++.-+    ...+.|+..-+.=-+
T Consensus       100 ~~i~~l~Pd~aS~~~gs~n~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~n~~~~~~~~~~----~~~e~gi~pe~e~~d  175 (311)
T 3e02_A          100 APARAARPEVASXNXGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGXT----ELGASGTRFEFECYD  175 (311)
T ss_dssp             HHHHHHCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHH----HHHTTTCEEEEEECS
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHH----HHHHCCCCCEEEEEC
T ss_conf             6665348875640003446663000000112044202333256656153389999999999----998628864389727


Q ss_pred             HHHHHHHHHHHHCCC-------CE-EECCHHCCCCCCCC
Q ss_conf             889999999996699-------39-97502227861007
Q gi|254780676|r  244 NEILQLMDDLRTADV-------DF-LTMGQYLQPTRKHH  274 (329)
Q Consensus       244 eEi~e~l~DLr~~gv-------di-lTiGQYL~Ps~~h~  274 (329)
                      -..+..+..|.+-|.       .+ +....++++++..+
T Consensus       176 ~g~i~~~~~l~~~G~l~~p~~~~~vlG~~~g~~a~p~~l  214 (311)
T 3e02_A          176 VGHLYNLAHFVDRKLVEPPFFLQCVFGILGGIGADPENL  214 (311)
T ss_dssp             HHHHHHHHHHHHTTSSCSCEEEEEEECCBTSCCSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH
T ss_conf             999999999997178789965499981577778880569


No 144
>>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} (A:1-345)
Probab=31.12  E-value=38  Score=15.15  Aligned_cols=80  Identities=10%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHC
Q ss_conf             8668999999997498236525788787675089726999866522353522344678998-888235799999999707
Q gi|254780676|r   51 SSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQ-PLDPQEPENISWAVRSMK  129 (329)
Q Consensus        51 ~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~-~~D~~EP~rvA~av~~l~  129 (329)
                      .-...+.-+.+++.+.++|+=.+++=+-.--|......             ++...+..|. .-|+.  ..+++|+++.|
T Consensus        58 ~fd~~~~v~~~k~aG~~~vvl~~khh~G~~lypS~~~~-------------~~~~~~~~~~~~~D~l--~~lv~a~~k~G  122 (345)
T 3gza_A           58 ELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNP-------------YCLKAVKWRDGKGDIV--RDFVNSCRKYG  122 (345)
T ss_dssp             TCCHHHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCS-------------SBGGGSSGGGGTCCHH--HHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCHH--HHHHHHHHHCC
T ss_conf             18999999999985997899702006875574899999-------------7755576768875579--99999986559


Q ss_pred             CCEEEEECCCCCCCCC
Q ss_conf             7518985054453453
Q gi|254780676|r  130 LSHVVITSVDRDDLDD  145 (329)
Q Consensus       130 Lk~vViTSV~RDDL~D  145 (329)
                      |+..+=.|+.++-...
T Consensus       123 ik~~~y~s~~~~~~~~  138 (345)
T 3gza_A          123 LQPGIYIGIRWNSLLG  138 (345)
T ss_dssp             CEEEEEECCSCBTTTT
T ss_pred             CCEEEEEECCCCCCCC
T ss_conf             7358998321257554


No 145
>>2vxh_A Chlorite dismutase; heme-based enzyme, azospira oryzae strain GR-1, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.1A {Azospira oryzae} (A:)
Probab=30.74  E-value=38  Score=15.10  Aligned_cols=73  Identities=11%  Similarity=0.167  Sum_probs=40.3

Q ss_pred             CCCEEEE-EEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-----CEEEC
Q ss_conf             1404887-64206889999999996699399750222786100780---002384699999999997496-----24340
Q gi|254780676|r  232 KSGIMLG-LGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKV---ESFVTPQDFKSYETIAYSKGF-----LMVSA  302 (329)
Q Consensus       232 KSGlMvG-LGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV---~ryv~P~eF~~~~~~a~~~Gf-----~~V~S  302 (329)
                      |+.||+= +|++.+++-++..+|+..+     ||+||.|+...+-|   .+|+...+-..+..-....++     +++.-
T Consensus        75 ~aDlm~w~~~~~~~~lq~~~~~l~~t~-----lg~~l~~~~s~~sv~~~s~Y~~~~~~~~~~~~~~~~~~~~p~~~y~~~  149 (251)
T 2vxh_A           75 NSDFFFRINAYDLAKAQTFMREFRSTT-----IGKNADVFETLVGVTKPLNYISKDKSPGLNAGLSSATYSGPAPRYVIV  149 (251)
T ss_dssp             SCSEEEEEEESSHHHHHHHHHHHHTST-----TGGGEEEEEEEEEECCCCSSSSTTTCHHHHHHHHHCCCCSSCCCEEEE
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCC-----CCCCCCCEEEEEEEECCHHCCCCCCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf             778899994899999999999998533-----646341024567751222025788982341367656789998777999


Q ss_pred             CCCCCCC
Q ss_conf             4830010
Q gi|254780676|r  303 SPLTRSS  309 (329)
Q Consensus       303 gPlVRSS  309 (329)
                      =|++||-
T Consensus       150 YPm~Ks~  156 (251)
T 2vxh_A          150 IPVKKNA  156 (251)
T ss_dssp             EEECCCH
T ss_pred             EECCCCH
T ss_conf             9678881


No 146
>>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, asymmetric loop, 7S RNA; 3.20A {Sulfolobus solfataricus} (A:)
Probab=30.65  E-value=38  Score=15.10  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             6789--9888823579999999970775189850
Q gi|254780676|r  106 ATGK--PQPLDPQEPENISWAVRSMKLSHVVITS  137 (329)
Q Consensus       106 ~~G~--P~~~D~~EP~rvA~av~~l~Lk~vViTS  137 (329)
                      ..|+  |..++---...+++|++.|||++++-.+
T Consensus        32 ~eGRrv~kaV~~P~~~EI~~a~~~Lgl~~~~e~~   65 (109)
T 3ktw_A           32 SKGRRLARIPYKIKTEELVSTLRELGLDPIVIEN   65 (109)
T ss_dssp             GGTCCSSCCSSCCCHHHHHHHHHHTTCCCEEECS
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             3167153212898999999999984998587038


No 147
>>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris CGA009} (A:165-452)
Probab=30.51  E-value=22  Score=16.76  Aligned_cols=141  Identities=18%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCHHHHHHHH----HHHHHHHCCCC---EE--EEECCCCCC
Q ss_conf             998-8882357999999997077518985054453--453258999999----99998533586---89--981546234
Q gi|254780676|r  109 KPQ-PLDPQEPENISWAVRSMKLSHVVITSVDRDD--LDDGGAQHFAEV----ISAIRESAPST---TI--EVLTPDFLR  176 (329)
Q Consensus       109 ~P~-~~D~~EP~rvA~av~~l~Lk~vViTSV~RDD--L~DgGA~hfa~~----I~~Ir~~~P~~---~I--EvLiPDf~G  176 (329)
                      ||. .+.++|-.+++.....=|+..+      .||  |.|.--..|.+.    .++|++.+-+|   ++  =-++-|..-
T Consensus        28 KP~~Gls~~~~a~~~y~~~~GG~D~i------KDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~lYa~NiTg~~~e  101 (288)
T 2qyg_A           28 KPNIGLPPQPFAELGYQSWTGGLDIA------KDDEMLADVDWCPLAERAALLGDACRRASAETGVPKIYLANITDEVDR  101 (288)
T ss_dssp             SSCTTCCSHHHHHHHHHHHHHTCSEE------ECCTTCCSCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCCTTH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH
T ss_conf             88788998999999999986379810------378566797888699999999999999999859710475026888999


Q ss_pred             CHHHHHHHHHCCCHHHHHCCC--------CCCCCCCCC----CCCC-HHHH------HHHHHHHH-HHCCCEEEECCCEE
Q ss_conf             468999874107023320138--------300027563----8970-3589------99999999-97089167014048
Q gi|254780676|r  177 KPHALEKVVSAKPDVFNHNLE--------TVASNYLMV----RPGA-RYFH------SLRLLQRV-KELDPLIFTKSGIM  236 (329)
Q Consensus       177 ~~~al~~v~~A~pdV~nHNiE--------TV~rLy~~V----Rp~a-~Y~r------SL~vL~~a-K~~~~~i~TKSGlM  236 (329)
                      -.+..+.+.++|...+=+|.-        +.++-+...    |-.+ .|.|      |-.||... +-+|.+..-=.+.=
T Consensus       102 m~~ra~~a~~~G~~~vmi~~~~~G~~al~~L~~~~~l~ihaHrA~~ga~~r~~~~Gis~~vl~kl~RLaGaD~i~~~~~~  181 (288)
T 2qyg_A          102 LTELHDVAVANGAGALLINAMPVGLSAVRMLRKHATVPLIAHFPFIAAFSRLANYGIHSRVMTRLQRLAGFDVVIMPGFG  181 (288)
T ss_dssp             HHHHHHHHHHTTCCEEEEEHHHHCHHHHHHHHTTCCSCEEEECTTHHHHHSCTTSEECHHHHHHHHHHHTCSEEEECCSS
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf             99999879872994899936553579999998608864576155530113687885719999999998188812416887


Q ss_pred             EEEEECHHHHHHHHHHHHH
Q ss_conf             8764206889999999996
Q gi|254780676|r  237 LGLGETRNEILQLMDDLRT  255 (329)
Q Consensus       237 vGLGEt~eEi~e~l~DLr~  255 (329)
                      -.++++++++.+.+..++.
T Consensus       182 g~~~~~~~~~~~~~~~~~~  200 (288)
T 2qyg_A          182 PRMMTPEHEVLDCIRACLE  200 (288)
T ss_dssp             GGGCCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             7746675777889998726


No 148
>>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} (A:86-350)
Probab=30.40  E-value=39  Score=15.07  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHCCCHH
Q ss_conf             88235799999999707751898505445345325899999999998533586899815-46234468999874107023
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDV  191 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLi-PDf~G~~~al~~v~~A~pdV  191 (329)
                      -|.+--...+++.++.|...|-+..-+-++.+.+=..+-.+..+++++..-+..+.+.+ +-|..+.+.+....      
T Consensus        32 ~~~e~~~~~i~~l~~aG~~~vr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~i~~~~~~~~l~~~~------  105 (265)
T 1vr6_A           32 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYA------  105 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCEE------
T ss_conf             98999999999988707000244110412245435685588888888677535972488623134456563122------


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf             32013830002756389703589999999999708916701404887642068899999999966993
Q gi|254780676|r  192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD  259 (329)
Q Consensus       192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd  259 (329)
                                  ..+|-.+.=-.....|+.+...+.-+    .+..|++-+.+|....++-+.+.|.+
T Consensus       106 ------------d~ikI~s~~~~n~~ll~~~a~~~~pv----~i~~~~~~~~~~~~~a~~~~~~~g~~  157 (265)
T 1vr6_A          106 ------------DIIQIGARNAQNFRLLSKAGSYNKPV----LLKRGFMNTIEEFLLSAEYIANSGNT  157 (265)
T ss_dssp             ------------SEEEECGGGTTCHHHHHHHHTTCSCE----EEECCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             ------------EEEEECHHHCCCHHHHHHHHCCCCCE----EECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             ------------57997512215689999863468748----96175443255544568988705986


No 149
>>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} (A:292-491)
Probab=30.00  E-value=39  Score=15.02  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             CHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE------EEEECCCCCCCCC
Q ss_conf             87675089726999866522353522344678998888235799999999707751------8985054453453
Q gi|254780676|r   77 NIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSH------VVITSVDRDDLDD  145 (329)
Q Consensus        77 Ni~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~------vViTSV~RDDL~D  145 (329)
                      +-++|...|  ||-|||..           +--|-.-|..=-.-|.+++++|+|.+      +-|++||--.|+.
T Consensus        27 ~~~~~~~AG--~F~VLGG~-----------~EMpW~FdRlykydIT~~l~~l~l~~d~f~i~~~i~~vnGt~l~s   88 (200)
T 3l6w_A           27 TDSDDEYAG--SFVILGGA-----------KEMPWAYERLYRFDITETVHNLNLTDDHVKFRFDLKKYDHTELDA   88 (200)
T ss_pred             CCCCCCEEE--EEEEECCC-----------CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf             888753421--89980487-----------567634474110017999998499976648999999418957865


No 150
>>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* (A:1-391)
Probab=29.51  E-value=18  Score=17.47  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=101.3

Q ss_pred             CCCCCHHHCC-----------CCCCCHHH----HHHHHHHH---HCCCCEEEC-CCCCCCHHHHHC----C---------
Q ss_conf             8898824500-----------17998668----99999999---749823652-578878767508----9---------
Q gi|254780676|r   37 KMQKPDWIRV-----------RAPVSSGY----KETYNILR---SRNLTTVCE-EAGCPNIGECWN----K---------   84 (329)
Q Consensus        37 ~~~kP~Wlk~-----------~~p~~~~~----~~~~~~l~---~~~L~TVCe-eA~CPNi~ECw~----~---------   84 (329)
                      ..++|.||+-           +++. +.+    .+++..+.   +.+|.-|+. |-+.++...=+.    +         
T Consensus        39 S~Prp~~l~el~~a~e~~~~g~~~~-~~l~~~~~ai~~~v~~q~~aGidvitdGe~~~~d~~~~~~~~l~g~~~~~~~~~  117 (391)
T 1t7l_A           39 GFPKIGEKREFKKALEDFWKGKITE-EQFEEEMNKLRMYMVENYRKNVDVIPSNELSYYDFVLDTAVMVGAVPERFGEYR  117 (391)
T ss_dssp             CCCSSCTTCHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHHHHHHHCSSCEESCCCSSCHHHHHHHHTTCCCGGGCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             6888898748999999997799999-999999999999999999859985376886207589999998099763247788


Q ss_pred             -----------CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-EEEEECC--------------
Q ss_conf             -----------72699986652235352234467899888823579999999970775-1898505--------------
Q gi|254780676|r   85 -----------NHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS-HVVITSV--------------  138 (329)
Q Consensus        85 -----------gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk-~vViTSV--------------  138 (329)
                                 .++..| .....|+.....-.-.+.+..++...........+..+.. -++|||.              
T Consensus       118 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~a~~~~~~vK~~l~GP~tl~~~~~~~~~~~  196 (391)
T 1t7l_A          118 GLSTYFDMARGGKALEM-TKFFNTNYHYLVPEIETEEFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEWI  196 (391)
T ss_dssp             SHHHHHHHHSSTTCCEE-EECTTSSCEEEECBCCCSCCCCSCCHHHHHHHHHHTTTCCCEEEEECHHHHHHTCEETTEEC
T ss_pred             CHHHCCHHCCCCCHHHH-CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCC
T ss_conf             73230201278640220-01026776712342379863567773199999998679987258857699999864554443


Q ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----HHHHHHHHHCC------CHHHHHCCCCCCCCC
Q ss_conf             ----445345325899999999998533586899815462344-----68999874107------023320138300027
Q gi|254780676|r  139 ----DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK-----PHALEKVVSAK------PDVFNHNLETVASNY  203 (329)
Q Consensus       139 ----~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~-----~~al~~v~~A~------pdV~nHNiETV~rLy  203 (329)
                          ++.||-+.-|..+.+-|+++.+.--. .|.+-=|-+...     .+++..+.+.-      .+++.+|.+-.+.+.
T Consensus       197 ~~y~~~~el~~~la~~~~~ei~~L~~aG~~-~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~v~vh~c~~~~~~~~~l~  275 (391)
T 1t7l_A          197 RRPNQMEKLLESLVSVYKEVFEKLVENGCK-EILVNEPAFVCDLEKAHWDLILNVYRELSEFPLTVFTYYDSVSDYEACV  275 (391)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CEEEECGGGGSCCBHHHHHHHHHHHHTTTTSCEEEECCSSCCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEECCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf             445699999999999999999999967997-8995786242368999999999999985228889988887677789996


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE---------ECHHHHHHHHHHHHHCCCCEEECCHHCCCCCC
Q ss_conf             56389--70358999999999970891670140488764---------20688999999999669939975022278610
Q gi|254780676|r  204 LMVRP--GARYFHSLRLLQRVKELDPLIFTKSGIMLGLG---------ETRNEILQLMDDLRTADVDFLTMGQYLQPTRK  272 (329)
Q Consensus       204 ~~VRp--~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG---------Et~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~  272 (329)
                      ..=-.  .-+|.++-.-+.......  +.  ++-.+|+|         |+.|||.+.++.+.   --+++=.=.|.+.+.
T Consensus       276 ~~~vd~l~le~~~~~~~~~~~~~~~--~~--~~k~i~~GvVd~~~~~~E~~eev~~ri~~~e---~l~vspdCGl~~lp~  348 (391)
T 1t7l_A          276 SLPVKRLHFDFVSNEENLKNLEKHG--FP--EDKKLVAGVINGRQPWKVDLRKVASLVEKLG---ASAISNSCPLFHLPV  348 (391)
T ss_dssp             TSSCSEEEEECSSCSHHHHHHHHHC--CC--TTSEEEEEEECSSCCBCCCHHHHHHHHHHHT---CSEEEESSCGGGSCS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCC--CC--CCCEEEEEEECCCCHHHCCHHHHHHHHHHHH---CCCCCCCCCCCCCCC
T ss_conf             4886569752357877799999626--98--7737887665375030049999999999854---531468876523885


Q ss_pred             CCCCCCCCCH
Q ss_conf             0780002384
Q gi|254780676|r  273 HHKVESFVTP  282 (329)
Q Consensus       273 h~pV~ryv~P  282 (329)
                      .........+
T Consensus       349 ~~~~~~~~~~  358 (391)
T 1t7l_A          349 TLELENNLPG  358 (391)
T ss_dssp             CSTTCCSSST
T ss_pred             CCCCCCCCCH
T ss_conf             4655668997


No 151
>>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} (A:)
Probab=29.37  E-value=40  Score=14.95  Aligned_cols=189  Identities=12%  Similarity=-0.010  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHHHHHCCC
Q ss_conf             88235799999999707751898505445345325899999999998533586899815462344---689998741070
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRK---PHALEKVVSAKP  189 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~---~~al~~v~~A~p  189 (329)
                      .+..|-.+.|+.++.+|...++++..--.--.++=..||...+.+...-.|=.  =--.|.+.|.   .+.+..++...+
T Consensus        86 ~st~~~ie~a~~a~~~Gad~v~v~Ppy~~~~~~~i~~~~~~i~~a~~~~iPi~--iYn~P~~~g~~l~~~~~~~l~~~~~  163 (313)
T 3dz1_A           86 PGFAAXRRLARLSXDAGAAGVXIAPPPSLRTDEQITTYFRQATEAIGDDVPWV--LQDYPLTLSVVXTPKVIRQIVXDSA  163 (313)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEE--EEECHHHHCCCCCHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE--EEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf             00466777765344312333334653112443368888998887405778646--7623422234478999998764056


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE---------------ECCCEEEEEEECHHHHHHHHHHHH
Q ss_conf             23320138300027563897035899999999997089167---------------014048876420688999999999
Q gi|254780676|r  190 DVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIF---------------TKSGIMLGLGETRNEILQLMDDLR  254 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~---------------TKSGlMvGLGEt~eEi~e~l~DLr  254 (329)
                      .++.-=-+          ...+..+-...+...+...++..               --.|.+.|++--.-++...+.++.
T Consensus       164 ~~v~~kk~----------s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~g~is~~~~~~p~~~~~~~~~~  233 (313)
T 3dz1_A          164 SCVXLKHE----------DWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEXERGADGAXTGYCFPDXLVDVVKLS  233 (313)
T ss_dssp             SEEEEEEC----------CSSCHHHHHHHHHHHHHTSSCCCEEEECGGGTTHHHHHHHTCCEEEECCSCHHHHHHHHHHH
T ss_pred             CCEEEEEC----------CCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCEECCHHHHHHHHHH
T ss_conf             53057733----------78508899999986110256774586161789988876407765513501748999988888


Q ss_pred             HCCC--CEEECCHHCCCCCCCCCCCCCC-CHHHH-HHHHHHHHHCCC-CE-EECCCCCCCCHHHHHHHHHH
Q ss_conf             6699--3997502227861007800023-84699-999999997496-24-34048300103189999999
Q gi|254780676|r  255 TADV--DFLTMGQYLQPTRKHHKVESFV-TPQDF-KSYETIAYSKGF-LM-VSASPLTRSSYHAGDDFLRL  319 (329)
Q Consensus       255 ~~gv--dilTiGQYL~Ps~~h~pV~ryv-~P~eF-~~~~~~a~~~Gf-~~-V~SgPlVRSSY~A~e~~~~~  319 (329)
                      ..|=  ....+-+-++      ++.++. ...-+ ..+|.....+|. .. ..=-|+..-+-...+...+.
T Consensus       234 ~~gd~~~A~~l~~~l~------~~~~~~~~~~~~i~~~K~~l~~~G~~~~~~~R~P~~~l~~~~~~~i~~~  298 (313)
T 3dz1_A          234 KAGQRDLAHNLFDAHL------PLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYL  298 (313)
T ss_dssp             HTTCHHHHHHHHHHHH------HHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHH------HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             6230899999999999------9999997158878999999997799999998999899999999999999


No 152
>>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} (A:)
Probab=28.98  E-value=41  Score=14.90  Aligned_cols=139  Identities=6%  Similarity=-0.030  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----------CHHHHH
Q ss_conf             8823579999999970775189850544534532589999999999853358689981546234----------468999
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR----------KPHALE  182 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G----------~~~al~  182 (329)
                      +|+..-....+....+|..-|-|-+-.    -+..-+...+.++..+..  +..||.-+--..|          -.++.+
T Consensus        82 ldh~~~~~~i~~a~~~Gf~sVmiD~S~----l~~~enit~~~v~~a~~~--g~~vE~ElG~~~g~e~~~~~~t~~~~a~~  155 (251)
T 1qwg_A           82 YSKGKFDEFLNECEKLGFEAVEISDGS----SDISLEERNNAIKRAKDN--GFMVLTEVGKKMPDKDKQLTIDDRIKLIN  155 (251)
T ss_dssp             HHTTCHHHHHHHHHHHTCCEEEECCSS----SCCCHHHHHHHHHHHHHT--TCEEEEEECCSSHHHHTTCCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHCCCCEEEECCCC----CCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             974969999999998599889975985----678989999999999858--99895145578888665559999999999


Q ss_pred             HHHHCCCHHH---HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf             8741070233---2013830002756389703589999999999708916701404887642068899999999966993
Q gi|254780676|r  183 KVVSAKPDVF---NHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD  259 (329)
Q Consensus       183 ~v~~A~pdV~---nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd  259 (329)
                      -+.++|+|.+   +=.+=|+--+|+.. +    .-..++|+..++.-+ +   .  .|=.|=+.+|.++-+-...-..+.
T Consensus       156 f~~~tg~d~l~i~A~~~Gt~HG~y~~~-~----~l~~~~l~~I~~~~~-~---p--lVlHGaSg~~~~~~~i~~g~~KvN  224 (251)
T 1qwg_A          156 FDLDAGADYVIIEGRESGKGKGLFDKE-G----KVKENELDVLAKNVD-I---N--KVIFEAPQKSQQVAFILKFGSSVN  224 (251)
T ss_dssp             HHHHHTCSEEEECCTTTCCSSTTBCTT-S----CBCHHHHHHHHTTSC-G---G--GEEEECCSHHHHHHHHHHHCTTCC
T ss_pred             HHHHCCCCEEEEEHHHCCCCCCEECCC-C----CHHHHHHHHHHHHCC-C---C--CEEEECCCHHHHHHHHHHHCCCCC
T ss_conf             999668858998402117761224688-7----701889999998489-2---0--279978985689999999798965


Q ss_pred             EEE--CCHHCC
Q ss_conf             997--502227
Q gi|254780676|r  260 FLT--MGQYLQ  268 (329)
Q Consensus       260 ilT--iGQYL~  268 (329)
                      +-|  -.||++
T Consensus       225 i~t~~~~~~~~  235 (251)
T 1qwg_A          225 LANIAFDEVIS  235 (251)
T ss_dssp             EEEEEGGGHHH
T ss_pred             CCCCCHHHHHH
T ss_conf             23679999878


No 153
>>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} (A:)
Probab=28.26  E-value=39  Score=15.07  Aligned_cols=168  Identities=10%  Similarity=0.090  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCC
Q ss_conf             57999999997077518985054453453258999999999985335868998154623446899987410702332013
Q gi|254780676|r  117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNL  196 (329)
Q Consensus       117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNi  196 (329)
                      -|..+|+.....+.+...+..-++    -.|.+.+...+..+.+.. ...++ +.+.|++               +..|.
T Consensus        33 ~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~~---------------id~n~   91 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDA----AFGTGDNRALIAEVAQAM-DIKVE-LSGGIRD---------------DDTLA   91 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHH----HHTSCCCHHHHHHHHHHC-SSEEE-EESSCCS---------------HHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCC----CCCCCCHHHHHHHHHHHC-CCCEE-ECCCCCC---------------HHHHH
T ss_conf             989999999986998799984014----457650188898877642-77443-2142033---------------02211


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCC----EE--EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf             83000275638970358999999999-97089----16--7014048876420688999999999669939975022278
Q gi|254780676|r  197 ETVASNYLMVRPGARYFHSLRLLQRV-KELDP----LI--FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQP  269 (329)
Q Consensus       197 ETV~rLy~~VRp~a~Y~rSL~vL~~a-K~~~~----~i--~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~P  269 (329)
                      .....-...+--++.--+..+++... ++...    .+  .+.-++..|.-++.++.++..+.+.+.|++.+|+-.    
T Consensus        92 ~cp~~~~~~~~~Gs~ll~~p~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~v~~----  167 (244)
T 1vzw_A           92 AALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTD----  167 (244)
T ss_dssp             HHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEE----
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCEECCCCCCCHHHHHHHCCCCEEEEEE----
T ss_conf             0000265310567888741001122221566135542022115762465320223220023566540550578752----


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf             610078000238469999999999749624340483001031899
Q gi|254780676|r  270 TRKHHKVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGD  314 (329)
Q Consensus       270 s~~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e  314 (329)
                          .....+..+-.++.+++++.......+++|= ++|.=++.+
T Consensus       168 ----~~~~~~~~g~~~~~i~~i~~~~~~pvi~nGg-I~s~~d~~~  207 (244)
T 1vzw_A          168 ----IAKDGTLQGPNLELLKNVCAATDRPVVASGG-VSSLDDLRA  207 (244)
T ss_dssp             ----C-------CCCHHHHHHHHHTCSSCEEEESC-CCSHHHHHH
T ss_pred             ----CCCCCCCCCCCHHHHHHHHHCCCCCEEEECC-CCCHHHHHH
T ss_conf             ----0145522466177788887528988899899-999999999


No 154
>>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} (A:26-323)
Probab=28.21  E-value=42  Score=14.81  Aligned_cols=199  Identities=13%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHCCCCEEEE---ECC------------CC
Q ss_conf             2357999999997077518985054453453258-----999999999985335868998---154------------62
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRESAPSTTIEV---LTP------------DF  174 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~~P~~~IEv---LiP------------Df  174 (329)
                      .++-.+.++.+..+|++.|.+-.|...-.++|-.     +...++|++||+..|+..|=+   |.|            |-
T Consensus        32 id~l~~~v~~~~~~Gi~~v~lFgv~~~kd~~gs~a~~~~~~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~~~  111 (298)
T 1l6s_A           32 EKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLXEHG  111 (298)
T ss_dssp             GGGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBCSSS
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECCCC
T ss_conf             99999999999977976045435467789974241498658999999998408977387414326676888741201677


Q ss_pred             CCCHHHHHHH-------HHCCCHHHH------------------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             3446899987-------410702332------------------013830002756389703589999999999708916
Q gi|254780676|r  175 LRKPHALEKV-------VSAKPDVFN------------------HNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI  229 (329)
Q Consensus       175 ~G~~~al~~v-------~~A~pdV~n------------------HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i  229 (329)
                      --|.+.++.+       .+||.|+++                  |+.+-|.=+.-.+.-.+.|-   .-.|.+-...|.-
T Consensus       112 idND~Tl~~l~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKfaS~fY---GPFRdA~~Sap~g  188 (298)
T 1l6s_A          112 VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFY---GPFREAAGSALKG  188 (298)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCC---HHHHHHHTCCCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCC---CHHHHHHCCCCCC
T ss_conf             5758999999999999998179812513105659999999999769867513210234345134---5277884487889


Q ss_pred             EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCCC--CE
Q ss_conf             7014048876420688999999999669939975---022278-----6100780002384699999999997496--24
Q gi|254780676|r  230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYSKGF--LM  299 (329)
Q Consensus       230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~~Gf--~~  299 (329)
                      - |+.--+--+-..|-+.++..|+.+ |.|+|-+   .-||-=     ..-++||.-|---.||..++.-|..--+  +.
T Consensus       189 D-rksYQmdp~n~~eAlre~~~D~~E-GAD~vMVKPal~YLDIi~~~k~~~~~Pv~aYqVSGEYaMikaAa~~G~~d~~~  266 (298)
T 1l6s_A          189 D-RKSYQMNPMNRREAIRESLLDEAQ-GADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEK  266 (298)
T ss_dssp             C-CTTTSBCTTCHHHHHHHHHHHHHT-TCSBEEEESCTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSCHHH
T ss_pred             C-CCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
T ss_conf             9-852105877668999986031442-98658840441378899999982699889997528999999999869975676


Q ss_pred             E---------ECCCCCCCCHHHHHHHHH
Q ss_conf             3---------404830010318999999
Q gi|254780676|r  300 V---------SASPLTRSSYHAGDDFLR  318 (329)
Q Consensus       300 V---------~SgPlVRSSY~A~e~~~~  318 (329)
                      |         -+|-=.=-+|+|.+....
T Consensus       267 ~~~Esl~~~kRAGAd~IiTYfA~~~a~~  294 (298)
T 1l6s_A          267 VVLESLGSIKRAGADLIFSYFALDLAEK  294 (298)
T ss_dssp             HHHHHHHHHHHTTCSEEEETTHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             9999999998629999987078999998


No 155
>>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B (A:)
Probab=28.07  E-value=42  Score=14.80  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             882357999999997077518985
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVIT  136 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViT  136 (329)
                      ++.=-...+++|++.|||++++|-
T Consensus        29 V~~P~~~EI~~a~~~lgl~~~~ie   52 (106)
T 3dlu_A           29 VESPRVEEIVRAAEELKFKVIRVE   52 (106)
T ss_dssp             BSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCHHHHHHHHHHCCCCEEECC
T ss_conf             569899999999998499717526


No 156
>>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B (B:)
Probab=27.80  E-value=43  Score=14.76  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=72.2

Q ss_pred             HHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999749823652578878767508972699986652235352234467899-------88882357999999997077
Q gi|254780676|r   58 YNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKP-------QPLDPQEPENISWAVRSMKL  130 (329)
Q Consensus        58 ~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P-------~~~D~~EP~rvA~av~~l~L  130 (329)
                      ..+-+.++|.....-.++..--.+-.++..-..|-.++   ..-|....+..+       ......+-+|+|+..-.+..
T Consensus       101 ~~lR~~ldLyanvRp~r~~~g~~~~~~~iD~vivREnt---eg~Y~g~e~~~~~~~a~~~~~~tr~~~~ri~~~AF~~A~  177 (354)
T 3blx_B          101 LTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT---EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYAR  177 (354)
T ss_dssp             HHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECS---SEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHH
T ss_conf             45775528706677641125754435677769983245---754457666531111220113310112023224554244


Q ss_pred             C--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             5--189850544534532589999999999853358689981546
Q gi|254780676|r  131 S--HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD  173 (329)
Q Consensus       131 k--~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD  173 (329)
                      +  .-.+|+|+.-..--.....|..+.+++.+..|++.+|.+..|
T Consensus       178 ~~~rk~vt~v~Kanv~~~~~g~f~~~~~~va~~yp~i~~~~~~vD  222 (354)
T 3blx_B          178 AIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELID  222 (354)
T ss_dssp             HTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHH
T ss_pred             HHCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHH
T ss_conf             440344420440240002046787642006867798600345678


No 157
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367)
Probab=26.44  E-value=40  Score=14.98  Aligned_cols=30  Identities=3%  Similarity=-0.002  Sum_probs=24.1

Q ss_pred             EEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             764206889999999996699399750222
Q gi|254780676|r  238 GLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       238 GLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      .-|+|.|.+.++++.+++.|+.++.|.-.-
T Consensus        73 ~sg~t~e~~~~~~~~~k~~g~~vi~It~~~  102 (161)
T 2poc_A           73 TRDSLFPKVMSAIEQVTARDGRPIVICNEG  102 (161)
T ss_dssp             CGGGCCHHHHHHHHHHHHTTCCCEEEEETT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             587103444547999996698189999378


No 158
>>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=26.37  E-value=45  Score=14.59  Aligned_cols=57  Identities=7%  Similarity=-0.041  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH---CCCHHHHHCCCCCCC
Q ss_conf             325899999999998533586899815462344689998741---070233201383000
Q gi|254780676|r  145 DGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVS---AKPDVFNHNLETVAS  201 (329)
Q Consensus       145 DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~---A~pdV~nHNiETV~r  201 (329)
                      .++...+.+.|.+-.+.+|+++||+..-........+.....   ..|||+.-+-.....
T Consensus        41 ~~~~~~~~~~~~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~  100 (355)
T 3c9h_A           41 SLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQV  100 (355)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             988789999999999878992799996887899999998864478764100145279999


No 159
>>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} (A:1-327)
Probab=26.29  E-value=45  Score=14.58  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCCC-------CCC----------CCHHHHHHHHHHHHHHHCCC
Q ss_conf             799999999707751898505445-------345----------32589999999999853358
Q gi|254780676|r  118 PENISWAVRSMKLSHVVITSVDRD-------DLD----------DGGAQHFAEVISAIRESAPS  164 (329)
Q Consensus       118 P~rvA~av~~l~Lk~vViTSV~RD-------DL~----------DgGA~hfa~~I~~Ir~~~P~  164 (329)
                      |...|++++++|.||+|||+--.|       ...          .++-..+.+.+++.|+..-.
T Consensus        56 ~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~t~~~v~~s~~~~~~rDlv~el~~A~r~~Glk  119 (327)
T 3eyp_A           56 CRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLK  119 (327)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             9999999998599689962044673456788998876555766588877899999988634662


No 160
>>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (B:95-262)
Probab=26.23  E-value=45  Score=14.58  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             HHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC----CEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             999999970891670140488764206889999999996699----3997502227861007800023846999999999
Q gi|254780676|r  217 RLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV----DFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA  292 (329)
Q Consensus       217 ~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv----dilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a  292 (329)
                      +++..+++.+++++-=|.+|.--+.+.+++.++++.|++.|.    -|+-=|+.+.|                    +++
T Consensus        77 ~lv~~~~~~~~div~lS~~~~~~~~~~~~~~~~i~~lr~~g~~~~v~ii~GG~~~~~--------------------~~~  136 (168)
T 1xrs_B           77 DFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN--------------------EIA  136 (168)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--------------------HHH
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH--------------------HHH
T ss_conf             999999861999999986303630268999999999996699889789998998999--------------------999


Q ss_pred             HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9749624340483001031899999999998541
Q gi|254780676|r  293 YSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQH  326 (329)
Q Consensus       293 ~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~  326 (329)
                      .++|+..++.     +...|.+....+....++.
T Consensus       137 ~~~Gad~~~~-----~~~~~~~~~~~l~~~~~~~  165 (168)
T 1xrs_B          137 KELGYDAGFG-----PGRFADDVATFAVKTLNDR  165 (168)
T ss_dssp             HTTTCSEEEC-----TTCCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCEECC-----CCCCHHHHHHHHHHHHHHH
T ss_conf             9779988859-----9988999999999999987


No 161
>>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=26.11  E-value=46  Score=14.56  Aligned_cols=80  Identities=10%  Similarity=0.066  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHCC
Q ss_conf             88823579999999970775189850544534532589999999999853358689981546234---468999874107
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLR---KPHALEKVVSAK  188 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G---~~~al~~v~~A~  188 (329)
                      .....|-...|+.++++|...+++....=--+.|.+.-.|.+   +|-+..+--.+=--.|..-|   ..+.+..+....
T Consensus        78 ~~s~~~ai~~a~~a~~~G~d~v~i~pP~~~~~s~~~i~~~~~---~ia~a~~~pi~iyn~P~~~g~~l~~~~l~~l~~~~  154 (289)
T 2yxg_A           78 SNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFG---KVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEY  154 (289)
T ss_dssp             CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHH---HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             401999999999999779999998898788989999999999---99982799889997863115543078899998640


Q ss_pred             CHHHHH
Q ss_conf             023320
Q gi|254780676|r  189 PDVFNH  194 (329)
Q Consensus       189 pdV~nH  194 (329)
                      |.|.+.
T Consensus       155 ~~v~g~  160 (289)
T 2yxg_A          155 SNISAV  160 (289)
T ss_dssp             TTEEEE
T ss_pred             CCCCCC
T ss_conf             223344


No 162
>>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Pseudomonas syringae PV} (A:)
Probab=25.87  E-value=10  Score=19.09  Aligned_cols=16  Identities=31%  Similarity=0.606  Sum_probs=11.7

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             2235352234467899
Q gi|254780676|r   95 ICTRACTFCNVATGKP  110 (329)
Q Consensus        95 ~CTR~C~FC~V~~G~P  110 (329)
                      +-.|+|.||+.++|--
T Consensus        36 vlqRACaFvAMDhGll   51 (160)
T 3cit_A           36 VLQRACAFVAXDHGLL   51 (160)
T ss_dssp             HHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHCCCCCEE
T ss_conf             9998778860266558


No 163
>>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} (A:1-105,A:209-370)
Probab=25.72  E-value=46  Score=14.51  Aligned_cols=22  Identities=18%  Similarity=0.007  Sum_probs=9.5

Q ss_pred             ECHHHHHHHHHHHHH-CCCCEEE
Q ss_conf             206889999999996-6993997
Q gi|254780676|r  241 ETRNEILQLMDDLRT-ADVDFLT  262 (329)
Q Consensus       241 Et~eEi~e~l~DLr~-~gvdilT  262 (329)
                      |..+++++.+....+ .|||=+-
T Consensus       109 ~V~~~l~~~l~~Wi~~~GVDGfR  131 (267)
T 1wpc_A          109 EVVNELRNWGVWYTNTLGLDGFR  131 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             88877889999887446845586


No 164
>>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} (A:54-443)
Probab=25.54  E-value=23  Score=16.65  Aligned_cols=27  Identities=15%  Similarity=0.215  Sum_probs=11.2

Q ss_pred             EEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             876420688999999999669939975
Q gi|254780676|r  237 LGLGETRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       237 vGLGEt~eEi~e~l~DLr~~gvdilTi  263 (329)
                      ++.|.+..++.+...-+.+.|+|.+++
T Consensus       251 ~~~~~~~~~~~~~a~~~~~~g~~~i~~  277 (390)
T 1tv5_A          251 LAPDLNQEQKKEIADVLLETNIDGMII  277 (390)
T ss_dssp             ECSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             699987146799999987506512430


No 165
>>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} (A:32-328)
Probab=25.40  E-value=47  Score=14.47  Aligned_cols=201  Identities=14%  Similarity=0.152  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHCCCCEEEE---ECCCC----CC------
Q ss_conf             2357999999997077518985054453453258-----999999999985335868998---15462----34------
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVITSVDRDDLDDGGA-----QHFAEVISAIRESAPSTTIEV---LTPDF----LR------  176 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA-----~hfa~~I~~Ir~~~P~~~IEv---LiPDf----~G------  176 (329)
                      .++-.+.++-+..+|++.|.+-.|--+.-++|..     +...+.|+.||+..|+..|=+   |.|=-    .|      
T Consensus        32 id~l~~~ve~~~~lGI~aV~LFgvp~~Kd~~gs~a~~~~g~v~~air~iK~~~p~l~vi~Dvclc~YT~hGHcGil~~g~  111 (297)
T 1w1z_A           32 IDRAVEECKELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGI  111 (297)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECCSSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEESSSC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEECCCC
T ss_conf             99999999999870785899984543445672221254427999999998642161798531433001221500314897


Q ss_pred             --CHHHHHHH-------HHCCCHHHHH------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             --46899987-------4107023320------------------13830002756389703589999999999708916
Q gi|254780676|r  177 --KPHALEKV-------VSAKPDVFNH------------------NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLI  229 (329)
Q Consensus       177 --~~~al~~v-------~~A~pdV~nH------------------NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i  229 (329)
                        |.+.++.+       .+||.|+++-                  +.+-|+=+.-.+.-.+.|-   .=.|.+-...|..
T Consensus       112 idNd~Tl~~l~~~Al~~A~AGadivAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fY---GPFRdA~~S~p~~  188 (297)
T 1w1z_A          112 ILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFY---GPFRDALHSAPQF  188 (297)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTC---HHHHHHTTCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHH---HHHHHHHHCCCCC
T ss_conf             3338999999999999996578702144553579999999998447455631018888647765---7799987361126


Q ss_pred             EECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC---CHHCCC-----CCCCCCCCCCCCHHHHHHHHHHHHH--CCCCE
Q ss_conf             7014048876420688999999999669939975---022278-----6100780002384699999999997--49624
Q gi|254780676|r  230 FTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM---GQYLQP-----TRKHHKVESFVTPQDFKSYETIAYS--KGFLM  299 (329)
Q Consensus       230 ~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi---GQYL~P-----s~~h~pV~ryv~P~eF~~~~~~a~~--~Gf~~  299 (329)
                      --|++--+--+-..|-+.++..|+.+ |.|+|-+   .-||-=     ..-.+||.-|---.||..++.-|..  +.++.
T Consensus       189 gdrksYQmd~~n~~eAlre~~~D~~E-GAD~iMVKPa~~YLDii~~~k~~~~~Pv~aYqVSGEYaMikaAa~~G~~d~~~  267 (297)
T 1w1z_A          189 GDKSTYQMNPANTEEAMKEVELDIVE-GADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDR  267 (297)
T ss_dssp             SCSTTTSBCTTCSHHHHHHHHHHHHH-TCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
T ss_conf             87642206998758999999877871-99849852217789999999970599879997538999999999879975787


Q ss_pred             E---------ECCCCCCCCHHHHHHHHHH
Q ss_conf             3---------4048300103189999999
Q gi|254780676|r  300 V---------SASPLTRSSYHAGDDFLRL  319 (329)
Q Consensus       300 V---------~SgPlVRSSY~A~e~~~~~  319 (329)
                      +         .+|-=.=-||+|.+....+
T Consensus       268 ~~~Esl~~~kRAGAd~IiTY~A~~~a~~L  296 (297)
T 1w1z_A          268 VMMESLLCMKRAGADIIFTYYAKEAAKKL  296 (297)
T ss_dssp             HHHHHHHHHHHHTCSEEEETTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf             99999999997099999770399999862


No 166
>>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} (A:)
Probab=25.31  E-value=47  Score=14.46  Aligned_cols=192  Identities=8%  Similarity=0.047  Sum_probs=85.9

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHH
Q ss_conf             450017998668999999997498236525788787675089726999866522353522344678998--888235799
Q gi|254780676|r   43 WIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQ--PLDPQEPEN  120 (329)
Q Consensus        43 Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~--~~D~~EP~r  120 (329)
                      +.....+......++++.+++++|.-.|-.+                            +++.....+.  .-..+.-.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~   88 (278)
T 1i60_A           37 DKLPEYLKDHSLDDLAEYFQTHHIKPLALNA----------------------------LVFFNNRDEKGHNEIITEFKG   88 (278)
T ss_dssp             THHHHHTTSSCHHHHHHHHHTSSCEEEEEEE----------------------------EECCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC----------------------------CCCCCCCCHHHHHHHHHHHHH
T ss_conf             7870114830699999999981993899967----------------------------777789998999999999999


Q ss_pred             HHHHHHHHCCCEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHCC----CCEEEEECCCC--CCC-HHHHHHHHHCCCHH
Q ss_conf             9999997077518985054453--453258999999999985335----86899815462--344-68999874107023
Q gi|254780676|r  121 ISWAVRSMKLSHVVITSVDRDD--LDDGGAQHFAEVISAIRESAP----STTIEVLTPDF--LRK-PHALEKVVSAKPDV  191 (329)
Q Consensus       121 vA~av~~l~Lk~vViTSV~RDD--L~DgGA~hfa~~I~~Ir~~~P----~~~IEvLiPDf--~G~-~~al~~v~~A~pdV  191 (329)
                      ..++++.||.+++++.+-.+..  -.|..-..+++.++++-....    .+.+|-.-+..  .+. .+.++.+...+.+-
T Consensus        89 ~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gv~l~~E~~~~~~~~~~~~~~~~~li~~~~~~~  168 (278)
T 1i60_A           89 XXETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDN  168 (278)
T ss_dssp             HHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             99999982939899926988777787999999999999999999974998999835777555689999999998511663


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC-----------CCEEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf             32013830002756389703589999999999708916701-----------4048876420688999999999669939
Q gi|254780676|r  192 FNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK-----------SGIMLGLGETRNEILQLMDDLRTADVDF  260 (329)
Q Consensus       192 ~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK-----------SGlMvGLGEt~eEi~e~l~DLr~~gvdi  260 (329)
                      +.=++.+--    ..+.+-+....+..   .+..-..+..|           -...+.+|+-.-+..+.+..|++.|.+.
T Consensus       169 ~g~~~D~~h----~~~~g~~~~~~~~~---~~~~i~~~H~~D~~~~~~~~~~~~~~~~~G~G~id~~~i~~~L~~~g~~g  241 (278)
T 1i60_A          169 VGLVLDSFH----FHAXGSNIESLKQA---DGKKIFIYHIDDTEDFPIGFLTDEDRVWPGQGAIDLDAHLSALKEIGFSD  241 (278)
T ss_dssp             EEEEEEHHH----HHHTTCCHHHHHTS---CGGGEEEEEECEECCCCTTTCCGGGEESTTSSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEECHHH----HHHCCCCHHHHHHH---HCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             789854178----88649999999986---04516799993367776443456577599782248999999999849971


Q ss_pred             EECCHHCCC
Q ss_conf             975022278
Q gi|254780676|r  261 LTMGQYLQP  269 (329)
Q Consensus       261 lTiGQYL~P  269 (329)
                      .-+=.|-.+
T Consensus       242 ~i~~E~~~~  250 (278)
T 1i60_A          242 VVSVELFRP  250 (278)
T ss_dssp             EEEECCCCG
T ss_pred             EEEEECCCC
T ss_conf             799960682


No 167
>>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:1-275)
Probab=24.94  E-value=48  Score=14.41  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf             04887642068899999999966993
Q gi|254780676|r  234 GIMLGLGETRNEILQLMDDLRTADVD  259 (329)
Q Consensus       234 GlMvGLGEt~eEi~e~l~DLr~~gvd  259 (329)
                      -+++|.|++.+|+.+.+...+..+++
T Consensus       229 ~~~lg~~~s~~ea~~~~~~~~~~~~~  254 (275)
T 1ulv_A          229 SLALGFGADTAEALATAKASLGTGYK  254 (275)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCHH
T ss_conf             99999589989999999988630899


No 168
>>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242)
Probab=24.65  E-value=48  Score=14.38  Aligned_cols=113  Identities=12%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHCCCHHHHHC
Q ss_conf             57999999997077518985054453453258999999999985335868998154623-44689998741070233201
Q gi|254780676|r  117 EPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFL-RKPHALEKVVSAKPDVFNHN  195 (329)
Q Consensus       117 EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~-G~~~al~~v~~A~pdV~nHN  195 (329)
                      +-.-+++-+.+.+.+.+.|-..+    .+.|-.......+..++..-.+.-+.-.|.-. --...+.++.+++||++=. 
T Consensus         3 q~~~~~~~~~~~~~~~v~ii~~d----~~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~-   77 (119)
T 3hut_A            3 EGPNNAAWXIGDGFTSVAVIGVT----TDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYL-   77 (119)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEE-
T ss_pred             HHHHHHHHHHHCCCCEEEEEECC----CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE-
T ss_conf             99999988876078169996056----7265899999864454069789999955998731158999998659999999-


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHH
Q ss_conf             38300027563897035899999999997089167014048876420688999999
Q gi|254780676|r  196 LETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMD  251 (329)
Q Consensus       196 iETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~  251 (329)
                                   ...+.....+++.+++.|.+    .-++.+-+=+.++.++.+.
T Consensus        78 -------------~~~~~~~~~i~~~~~~~G~~----~~~~~~~~~~~~~~~~~~g  116 (119)
T 3hut_A           78 -------------AXAYEDAAPFLRALRARGSA----LPVYGSSALYSPKFIDLGG  116 (119)
T ss_dssp             -------------ESCHHHHHHHHHHHHHTTCC----CCEEECGGGCSHHHHHHHG
T ss_pred             -------------ECCHHHHHHHHHHHHHCCCC----CCEEEECCCCCHHHHHHCC
T ss_conf             -------------73668899999999981999----8656420567767764022


No 169
>>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:1-218)
Probab=24.63  E-value=48  Score=14.37  Aligned_cols=106  Identities=15%  Similarity=0.060  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEE-ECHHHHHHHHHH
Q ss_conf             2344689998741070233201383000275638970358999999999970891670140488764-206889999999
Q gi|254780676|r  174 FLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG-ETRNEILQLMDD  252 (329)
Q Consensus       174 f~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLG-Et~eEi~e~l~D  252 (329)
                      +.+-...++.++++|.+-+-=+--|-|-.+      -+.+...++++.+.+...+   +--+|+|.| .+-+|.++..+.
T Consensus        31 ~~~~~~~i~~~~~~G~~gi~~~G~tGE~~~------Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~t~~~i~~a~~  101 (218)
T 2wkj_A           31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFV------QSLSEREQVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAAS  101 (218)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSTTTTGGG------SCHHHHHHHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECEECCCHHH------CCHHHHHHHHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHH
T ss_conf             999999999999869998997757754213------8999999999999998632---3311110221102345677899


Q ss_pred             HHHCCCCEEECC--HHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCC
Q ss_conf             996699399750--222786100780002384699999999997-4962
Q gi|254780676|r  253 LRTADVDFLTMG--QYLQPTRKHHKVESFVTPQDFKSYETIAYS-KGFL  298 (329)
Q Consensus       253 Lr~~gvdilTiG--QYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~-~Gf~  298 (329)
                      ..++|+|-+-+.  .|..|+          ..+-++.|++++.. -++.
T Consensus       102 a~~~Gad~vlv~pP~~~~~~----------~~~i~~~~~~i~~a~~~~p  140 (218)
T 2wkj_A          102 AKRYGFDAVSAVTPFYYPFS----------FEEHCDHYRAIIDSADGLP  140 (218)
T ss_dssp             HHHHTCSEEEEECCCSSCCC----------HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCCCCEECCCCCCCCC----------HHHHHHHHHHHHCCCCCCC
T ss_conf             99759961201488646776----------3679999998751477786


No 170
>>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:22-153,A:205-323)
Probab=24.46  E-value=22  Score=16.83  Aligned_cols=135  Identities=20%  Similarity=0.193  Sum_probs=73.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH-------
Q ss_conf             9988882357999999997077518985054453453258999999999985335868998154623446899-------
Q gi|254780676|r  109 KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHAL-------  181 (329)
Q Consensus       109 ~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al-------  181 (329)
                      +|..++...-..+++.++...-+++|+..         ||               |+.++.=+|||++....+       
T Consensus         1 r~~m~~~~~i~~l~~~i~~~~a~~ivv~~---------GA---------------GiS~~sGiP~fr~~~~~~~~~~~~~   56 (251)
T 1j8f_A            1 KERLLDELTLEGVARYMQSERCRRVICLV---------GA---------------GISTSAGIPDFRSPSTGLYDNLEKY   56 (251)
T ss_dssp             --CCCSSSSHHHHHHHHHSTTCCCEEEEE---------CG---------------GGTGGGTCCCTTCSCSTTSTTTTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEEEEEE---------CC---------------EEEHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             55366745899999999747888699993---------87---------------2001008998638999863587556


Q ss_pred             ---HHHHHCCCHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCC--EEEE--------CCC---EEEEEEECHH
Q ss_conf             ---987410702332013830002756389-7035899999999997089--1670--------140---4887642068
Q gi|254780676|r  182 ---EKVVSAKPDVFNHNLETVASNYLMVRP-GARYFHSLRLLQRVKELDP--LIFT--------KSG---IMLGLGETRN  244 (329)
Q Consensus       182 ---~~v~~A~pdV~nHNiETV~rLy~~VRp-~a~Y~rSL~vL~~aK~~~~--~i~T--------KSG---lMvGLGEt~e  244 (329)
                         .....+.++.|..|-+.+-.+|...+. .+.-..+-..|+...+.+.  .+.|        ++|   ++-=-|.-.+
T Consensus        57 ~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pt~~H~~L~~L~~~~~~~~iiTqNiD~L~~rAg~~~vielHG~Lp~  136 (251)
T 1j8f_A           57 HLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEASLPA  136 (251)
T ss_dssp             CCSSGGGGGBHHHHHHCCHHHHHHHHHHSSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETCCCH
T ss_pred             CCCCHHHHHCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCHHHHHHHCCCH
T ss_conf             89999998688999879699999999873474899988999999997298735996467137660598566665537999


Q ss_pred             HHHHHH-HHHHHCCCCEEECCHHCC
Q ss_conf             899999-999966993997502227
Q gi|254780676|r  245 EILQLM-DDLRTADVDFLTMGQYLQ  268 (329)
Q Consensus       245 Ei~e~l-~DLr~~gvdilTiGQYL~  268 (329)
                      .+.+.+ .|+...++ +|.||-=|+
T Consensus       137 ~~~~~~~~d~~~~Dl-liViGTSl~  160 (251)
T 1j8f_A          137 RFFSCMQSDFLKVDL-LLVMGTSLQ  160 (251)
T ss_dssp             HHHHHHHHGGGSCSE-EEEESSCSC
T ss_pred             HHHHHHHHHHHCCCE-EEEECCCCE
T ss_conf             999999999966999-999899887


No 171
>>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219)
Probab=24.14  E-value=49  Score=14.31  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCEEEEEEE-CHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             89999999999708916701404887642-0688999999999669939975
Q gi|254780676|r  213 FHSLRLLQRVKELDPLIFTKSGIMLGLGE-TRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       213 ~rSL~vL~~aK~~~~~i~TKSGlMvGLGE-t~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +...++++.+.+...   .+--+|+|.|. +-+|.++.++...++|+|-+-+
T Consensus        67 ~Er~~~~~~~~~~~~---~~~~vi~gv~~~st~~ai~~a~~a~~~Gad~v~v  115 (219)
T 1xxx_A           67 GEKIELLRAVLEAVG---DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV  115 (219)
T ss_dssp             HHHHHHHHHHHHHHT---TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHHC---CCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999999840---4564453354302788999999999825791999


No 172
>>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} (A:)
Probab=24.07  E-value=50  Score=14.30  Aligned_cols=15  Identities=7%  Similarity=0.293  Sum_probs=7.9

Q ss_pred             HHHHHHHCCCEEEEE
Q ss_conf             999997077518985
Q gi|254780676|r  122 SWAVRSMKLSHVVIT  136 (329)
Q Consensus       122 A~av~~l~Lk~vViT  136 (329)
                      |+.++.+|.+||.|-
T Consensus        79 ~~~Lkd~G~~~viiG   93 (252)
T 2btm_A           79 PVMLKDLGVTYVILG   93 (252)
T ss_dssp             HHHHHHHTCCEEEES
T ss_pred             HHHHHHHCCCEEECC
T ss_conf             999987085301013


No 173
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60)
Probab=23.94  E-value=36  Score=15.30  Aligned_cols=44  Identities=9%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             HHHHHHH-HCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9999999-66993997502227861007800023846999999999974962
Q gi|254780676|r  248 QLMDDLR-TADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL  298 (329)
Q Consensus       248 e~l~DLr-~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~  298 (329)
                      -+|.|+. .+||.+-|+..||....       .+.|+.-+...+.+.++||.
T Consensus        10 ~tl~diA~~aGvS~sTVSr~ln~~~-------~vs~~tr~rV~~~a~elgY~   54 (60)
T 3h5t_A           10 GTLASIAAKLGISRTTVSNAYNRPE-------QLSAELRQRILDTAEDMGYL   54 (60)
T ss_dssp             THHHHHHHHHTSCHHHHHHHHHCGG-------GSCHHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHCCC
T ss_conf             6299999998849999999858989-------99999999999999985889


No 174
>>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} (C:105-185,C:404-466)
Probab=23.86  E-value=13  Score=18.41  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH------HC-CCCEEECCCCCCCCHHH
Q ss_conf             0688999999999669939975022278610078000238469999999999------74-96243404830010318
Q gi|254780676|r  242 TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAY------SK-GFLMVSASPLTRSSYHA  312 (329)
Q Consensus       242 t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~------~~-Gf~~V~SgPlVRSSY~A  312 (329)
                      ++|++++..+-+..+-..-+|...||+|..        .+|++.+++++.-+      .. ++..|..-+|.+.||..
T Consensus        56 ~de~lFqeAR~iv~a~~Q~I~~~e~L~pg~--------Ft~~QL~eIrk~sLariiCdn~d~i~~vq~~~F~~~~~~n  125 (144)
T 1d2v_C           56 DGERLYQEARKIVGAMVQIITYRDYLNEGV--------FSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPR  125 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTHSTTT--------SCHHHHHHHTTCCHHHHHHHHSSCCEEECSCTTTCCSTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCEECCCCCC
T ss_conf             878999999999999985713998787998--------9999999999668999876079985336766450789999


No 175
>>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* (A:)
Probab=23.52  E-value=51  Score=14.23  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHH-----------HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             999999997077518985054453453258999-----------999999985335868998154623446899987410
Q gi|254780676|r  119 ENISWAVRSMKLSHVVITSVDRDDLDDGGAQHF-----------AEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA  187 (329)
Q Consensus       119 ~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hf-----------a~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A  187 (329)
                      ..+|+....+|.++++|---|.=++.|-|.+.|           ....+.+++.||.+.++...-+........      
T Consensus        49 ~ei~knL~l~Gv~~i~iiD~d~v~~~nl~rqf~~~~~dig~~k~~~~~~~l~~~n~~v~~~~~~~~~~~~~~~~------  122 (346)
T 1y8q_A           49 AEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESF------  122 (346)
T ss_dssp             HHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHH------
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHH------
T ss_conf             99999999957987999949996574512065356324896117899999997589874123204355167999------


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf             7023320138300027563897035899999999997089167
Q gi|254780676|r  188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIF  230 (329)
Q Consensus       188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~  230 (329)
                                 .....-.|-...+..-...+-+..++.+.-+.
T Consensus       123 -----------~~~~d~vi~~~d~~~~~~~l~~~~~~~~~~~i  154 (346)
T 1y8q_A          123 -----------FTQFDAVCLTCCSRDVIVKVDQICHKNSIKFF  154 (346)
T ss_dssp             -----------HTTCSEEEEESCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------HHHCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             -----------96187487416999999999999998199889


No 176
>>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} (A:)
Probab=23.43  E-value=51  Score=14.22  Aligned_cols=15  Identities=0%  Similarity=0.089  Sum_probs=8.4

Q ss_pred             HHHHHHHCCCEEEEE
Q ss_conf             999997077518985
Q gi|254780676|r  122 SWAVRSMKLSHVVIT  136 (329)
Q Consensus       122 A~av~~l~Lk~vViT  136 (329)
                      |+.++.+|.+||.|-
T Consensus        79 ~~~L~d~G~~~vliG   93 (250)
T 1yya_A           79 ARMLSDLGCRYAIVG   93 (250)
T ss_dssp             HHHHHHTTCSEEEES
T ss_pred             HHHHHHHCCCEEECC
T ss_conf             799987354400002


No 177
>>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} (A:)
Probab=23.26  E-value=51  Score=14.20  Aligned_cols=40  Identities=8%  Similarity=0.052  Sum_probs=15.3

Q ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999970775189850544534532589999999999853
Q gi|254780676|r  122 SWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRES  161 (329)
Q Consensus       122 A~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~  161 (329)
                      ++..+.+|.+||.|----|-.+-+.--...++-++...+.
T Consensus        79 ~~mLkd~G~~~viIGHSERR~~f~E~d~~i~~Kv~~a~~~  118 (247)
T 1ney_A           79 VDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQ  118 (247)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             9999981993999655787753599708889999999976


No 178
>>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=23.21  E-value=51  Score=14.19  Aligned_cols=43  Identities=7%  Similarity=0.181  Sum_probs=28.8

Q ss_pred             CCEEEEEEE----CHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCC
Q ss_conf             404887642----0688999999999669939975022278610078
Q gi|254780676|r  233 SGIMLGLGE----TRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHK  275 (329)
Q Consensus       233 SGlMvGLGE----t~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~p  275 (329)
                      .|.++.++.    +.+-+-+.++-|++-|+.++|+.++++.-..+.|
T Consensus       210 ~~~~~~~~~~~~~~~~~l~~li~~lk~~g~~fvt~~e~~~~~~~~~~  256 (261)
T 2qv5_A          210 NGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGEGH  256 (261)
T ss_dssp             HSEEEEEEECCHHHHHHHHHHHHHGGGGTEEECCHHHHC--------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCCCC
T ss_conf             39379997899899999999726777588699987996410057876


No 179
>>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (o:56-188)
Probab=23.17  E-value=37  Score=15.20  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             HHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99999966993997502227861007800023846-99999999997496243404830010318999999999985413
Q gi|254780676|r  249 LMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQ-DFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLRLKNNRRQHL  327 (329)
Q Consensus       249 ~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~-eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~~~~~~~~~~  327 (329)
                      +..-+.++|..++||-|...-.+.--.+.-.--|. -=+.++.+|..-|-.+-..-|+|||-   ++-|++++-.|....
T Consensus        54 Ar~kI~~aGG~~ltfdqLa~~~P~G~n~~llrg~~~~R~a~khfG~apg~p~s~t~P~v~sk---grkfe~arGrr~s~~  130 (133)
T 2zkr_o           54 ARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSK---GRKFERARGRRASRG  130 (133)
T ss_dssp             HHHHHHHHSSCEEEHHHHHHHCTTCCSEEEEC------------------------------------------------
T ss_pred             HHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCHHHHCCCCCCCC
T ss_conf             99999975997964999998689999749985685304455236779999988887843055---431244216543345


No 180
>>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri} (A:)
Probab=23.11  E-value=52  Score=14.18  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHH
Q ss_conf             4048876420688999999999669939975022
Q gi|254780676|r  233 SGIMLGLGETRNEILQLMDDLRTADVDFLTMGQY  266 (329)
Q Consensus       233 SGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQY  266 (329)
                      +-.++|   |.+||.+-+.+++++|+|-+.|+.-
T Consensus       278 ~~~~vG---tp~~v~e~l~~~~~~G~d~~~l~~~  308 (327)
T 1z69_A          278 AFSICG---TPDDCMKRIKDLEAIGVTQIVAGSP  308 (327)
T ss_dssp             HHCEEE---SHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEEE---CHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             108992---8999999999999739998999478


No 181
>>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:1-96,A:321-388)
Probab=23.08  E-value=42  Score=14.82  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             HHH--HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             675--08972699986652235352234467899888
Q gi|254780676|r   79 GEC--WNKNHATFMILGAICTRACTFCNVATGKPQPL  113 (329)
Q Consensus        79 ~EC--w~~gtATFMilG~~CTR~C~FC~V~~G~P~~~  113 (329)
                      .||  |++-...|.+-|..|.|.|=+--.-.|+|+.-
T Consensus        93 ~~~vnwSGYSGsF~~~~~~C~~pCF~VElIRGrP~e~  129 (164)
T 1ivd_A           93 VCIANRSGYSGIFSVEGKSCINRCFYVELIRGRKQET  129 (164)
T ss_dssp             CSBCSCCCCEEEEEEECSSSEEEEEEEEEEEETTTST
T ss_pred             EEEECCCCCEEEEEECCCCCCCEEEEEEEEECCCCCC
T ss_conf             8998876412579977888521018999960787654


No 182
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:1-105,A:202-373)
Probab=22.63  E-value=53  Score=14.11  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=19.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCC
Q ss_conf             544534532589999999999853---358689981546234
Q gi|254780676|r  138 VDRDDLDDGGAQHFAEVISAIRES---APSTTIEVLTPDFLR  176 (329)
Q Consensus       138 V~RDDL~DgGA~hfa~~I~~Ir~~---~P~~~IEvLiPDf~G  176 (329)
                      |.|=++..|.-.-+.++|+.||+.   ..+..|-++. |.+|
T Consensus        64 ~~R~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~~i~~-d~~G  104 (277)
T 3gg8_A           64 VCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILL-DTKG  104 (277)
T ss_dssp             EEEEETTSSCHHHHHHHHHHHHHHHHHCTTCCCEEEE-ECCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCC
T ss_conf             9999899999999999999999999865899859999-4889


No 183
>>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} (A:)
Probab=22.60  E-value=53  Score=14.11  Aligned_cols=180  Identities=6%  Similarity=0.003  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHH
Q ss_conf             98668999999997498236525788787675089726999866522353522344678998888235-------79999
Q gi|254780676|r   50 VSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQE-------PENIS  122 (329)
Q Consensus        50 ~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~E-------P~rvA  122 (329)
                      ......++++.+++++|.-+.-.+.|                              ....+...|++.       -.+..
T Consensus        56 ~~~~~~~~~~~l~~~gl~i~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  105 (307)
T 1xp3_A           56 EELNIEAGRKHMEQNGIEEIIIHAPY------------------------------IINVGNTTKPETFQLGVDFLRMEI  105 (307)
T ss_dssp             GGGCHHHHHHHHHHTTCCCEEEECCT------------------------------TCCTTCCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCEECCCCE------------------------------EECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999998499751215842------------------------------433444243899999999999999


Q ss_pred             HHHHHHCCCEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEE----CCCCCC-CHHHHHHHHH--CCCHHHH
Q ss_conf             999970775189850544534532--589999999999853358689981----546234-4689998741--0702332
Q gi|254780676|r  123 WAVRSMKLSHVVITSVDRDDLDDG--GAQHFAEVISAIRESAPSTTIEVL----TPDFLR-KPHALEKVVS--AKPDVFN  193 (329)
Q Consensus       123 ~av~~l~Lk~vViTSV~RDDL~Dg--GA~hfa~~I~~Ir~~~P~~~IEvL----iPDf~G-~~~al~~v~~--A~pdV~n  193 (329)
                      +..+.||.+++++-+-...+-.+.  +-..+++.++++-.......|.+.    -+++.+ ..+.+..+++  ..+..+.
T Consensus       106 ~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gi~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g  185 (307)
T 1xp3_A          106 ERTSALGVAKQIVLHPGAHVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMAGKGTECGRSFEEIAKIIDGVKYNEKLS  185 (307)
T ss_dssp             HHHHHSSSCCEEEECCEECTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCCCCTTEECCSHHHHHHHHHHCTTGGGEE
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             99998487988998998666689999999999999987400464179987415667876678899999999836777769


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEE---------CCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf             0138300027563897035899999999997--0891670---------1404887642068899999999966993
Q gi|254780676|r  194 HNLETVASNYLMVRPGARYFHSLRLLQRVKE--LDPLIFT---------KSGIMLGLGETRNEILQLMDDLRTADVD  259 (329)
Q Consensus       194 HNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~--~~~~i~T---------KSGlMvGLGEt~eEi~e~l~DLr~~gvd  259 (329)
                      =++.+.--.....-+....+...+-+.++.-  .-..+..         .-+-++-+||-.-+..+.+..|++.|.+
T Consensus       186 ~~~D~~h~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~h~~d~~~~~~~~~~~~~~~G~G~id~~~i~~~L~~~gy~  262 (307)
T 1xp3_A          186 VCFDTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQVLHINDSKNVRGAGKDRHENIGFGHIGYKALHHIVHHPQLT  262 (307)
T ss_dssp             EEEEHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCTTCCCCCEECTTSSSSCHHHHHHHHTCGGGT
T ss_pred             EEECHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             98048889871277777899999999885253352376533676767756515678899976989999998182316


No 184
>>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* (A:131-178,A:224-280,A:346-362)
Probab=22.36  E-value=53  Score=14.08  Aligned_cols=45  Identities=11%  Similarity=0.011  Sum_probs=29.2

Q ss_pred             EECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             4206889999999996699399750222786100780002384699999
Q gi|254780676|r  240 GETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSY  288 (329)
Q Consensus       240 GEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~  288 (329)
                      =+|.+|++++.+.|++.|+.-+.++..--=+..    ...++|+-...+
T Consensus        20 P~TWdE~~~~a~klk~~g~~~~~~~~~~~l~~~----~~~wt~ew~aa~   64 (122)
T 2z8f_A           20 PQTADEFIAAAKTAAAAGKYIMSYQPDEAAATT----NPRWDPSFDASI   64 (122)
T ss_dssp             CCBHHHHHHHHHHHHHTTCBSCBCCGGGTCSBC----CCTTSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCCHHHHHHHH
T ss_conf             310589999999998659706874576659887----753124566665


No 185
>>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} (A:)
Probab=22.31  E-value=53  Score=14.07  Aligned_cols=120  Identities=11%  Similarity=-0.014  Sum_probs=74.9

Q ss_pred             HHHHHHHHHH-HCCCCEEECCCCCCCHHHHHC--CCCEEEEEECCCCCCCCCCCC---CCCCCCC-------CCCHHHHH
Q ss_conf             6899999999-749823652578878767508--972699986652235352234---4678998-------88823579
Q gi|254780676|r   53 GYKETYNILR-SRNLTTVCEEAGCPNIGECWN--KNHATFMILGAICTRACTFCN---VATGKPQ-------PLDPQEPE  119 (329)
Q Consensus        53 ~~~~~~~~l~-~~~L~TVCeeA~CPNi~ECw~--~gtATFMilG~~CTR~C~FC~---V~~G~P~-------~~D~~EP~  119 (329)
                      .+....-.+| .++|..-.--.+...-..+-.  .+..-|+|..+. |-..=+..   ..++.+.       ......-+
T Consensus        79 ~~~s~~~~lR~~ldlya~~Rp~~~~~g~~~~~~~~~~id~vivRen-teg~Y~g~e~~~~~~~~~~~a~~~~~~tr~~~~  157 (337)
T 1w0d_A           79 LERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREG-TEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVR  157 (337)
T ss_dssp             HHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEEC-SCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHH-HCCCCCCCCCCEECCCCCEEEEEEEEECCHHEE
T ss_conf             5441478899873466214666522531111145788775519766-167401688714248875477999850320023


Q ss_pred             HHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999970775-189850544534532589999999999853358689981546
Q gi|254780676|r  120 NISWAVRSMKLS-HVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPD  173 (329)
Q Consensus       120 rvA~av~~l~Lk-~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPD  173 (329)
                      |+|+..-++.++ --.+|+|+-...--..-..|.++.+++.+..|++.++-+..|
T Consensus       158 ria~~AF~~A~~~~~~vt~v~K~ni~~~~~~~f~~~~~~va~~~p~i~~~~~~vD  212 (337)
T 1w0d_A          158 RVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVD  212 (337)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHH
T ss_pred             EHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             2144565787536873897616147778889999988987415874034456578


No 186
>>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygenase; structural genomics, PSI-2, protein structure initiative; 1.82A {Burkholderia phytofirmans psjn} (A:69-141)
Probab=22.23  E-value=54  Score=14.06  Aligned_cols=31  Identities=13%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             140488764-2068899999999966993997
Q gi|254780676|r  232 KSGIMLGLG-ETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       232 KSGlMvGLG-Et~eEi~e~l~DLr~~gvdilT  262 (329)
                      -+|.++++. ++.+||-++...++++|+.++.
T Consensus         6 ~~~~~laf~v~s~e~Vd~~~~~~~~~G~~i~~   37 (73)
T 2rbb_A            6 GIKFLLNFDVDTKEAVDKLVPVAIAAGATLIK   37 (73)
T ss_dssp             SCCEEEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEC
T ss_conf             87048754113331455555542032203402


No 187
>>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} (A:123-169,A:241-286,A:349-360)
Probab=22.17  E-value=54  Score=14.05  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             ECHHHHHHHHHHHHHCCCCEEECCH
Q ss_conf             2068899999999966993997502
Q gi|254780676|r  241 ETRNEILQLMDDLRTADVDFLTMGQ  265 (329)
Q Consensus       241 Et~eEi~e~l~DLr~~gvdilTiGQ  265 (329)
                      .|+||++++.+.|++.|+--+++|-
T Consensus        23 tTWDEl~aaAkKLkaaGi~Pia~gg   47 (105)
T 3i3v_A           23 TTGDQLIAAARKLRAKGIAPVTVGG   47 (105)
T ss_dssp             CBHHHHHHHHHHHHHTTCEEEECCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             9889999999999862977334047


No 188
>>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} (A:)
Probab=22.14  E-value=54  Score=14.05  Aligned_cols=157  Identities=12%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCC-------------H-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             999999970775189850544534532-------------5-89999999999853358689981546234468999874
Q gi|254780676|r  120 NISWAVRSMKLSHVVITSVDRDDLDDG-------------G-AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVV  185 (329)
Q Consensus       120 rvA~av~~l~Lk~vViTSV~RDDL~Dg-------------G-A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~  185 (329)
                      ..-+....+|++++-+|--.+--|-||             | ..+-.+.|+++-++  ++.|.+-=.   ++.-..+.+.
T Consensus       135 ~~l~~~~~lGvR~i~lt~~~~N~la~g~~~~~~~~~~~~~GLt~~G~~~V~~mn~l--GiiIDvsH~---s~~~~~d~~~  209 (369)
T 1itu_A          135 GVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRL--GVLIDLAHV---SVATMKATLQ  209 (369)
T ss_dssp             HHHHHHHHTTEEEEESCSSSCCSSBCBGGGGGTSSCCSSSSBCHHHHHHHHHHHHH--TCEEECTTB---CHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCEEECCCC---CHHHHHHHHH
T ss_conf             89999997496499963587887777654346888766789673549999998753--824443778---7899999984


Q ss_pred             -HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEE----------E-ECHHHHHHHHHHH
Q ss_conf             -107023320138300027563897035899999999997089167014048876----------4-2068899999999
Q gi|254780676|r  186 -SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGL----------G-ETRNEILQLMDDL  253 (329)
Q Consensus       186 -~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGL----------G-Et~eEi~e~l~DL  253 (329)
                       .-+|-++.|.-  ++.+++.-|--.+     ++|+.+.+        +|.++|+          + -|.+++.+.+..+
T Consensus       210 ~s~~Pvi~SHs~--~r~l~~~~RNl~D-----e~ir~ia~--------~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~i  274 (369)
T 1itu_A          210 LSRAPVIFSHSS--AYSVCASRRNVPD-----DVLRLVKQ--------TDSLVMVNFYNNYISCTNKANLSQVADHLDHI  274 (369)
T ss_dssp             HCSSCCEESSCC--BTTTSCCTTSBCH-----HHHHHHHH--------HTCEEEECCCHHHHTSSSCCBHHHHHHHHHHH
T ss_pred             CCCCCEEEECCC--HHHCCCCCCCCCH-----HHHHHHHH--------CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             158974651426--6640787679988-----99999996--------49957650463303688631489999999999


Q ss_pred             HH-CCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             96-6993997502227861007800023846999999999974962
Q gi|254780676|r  254 RT-ADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFL  298 (329)
Q Consensus       254 r~-~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a~~~Gf~  298 (329)
                      .+ .|+|.|-||-=+--...+  +.-+-+|.+|..+.+.=.+.||.
T Consensus       275 ~~~~G~dhVgiGsD~dg~~~~--p~gl~~~~~~p~l~~~L~~rG~s  318 (369)
T 1itu_A          275 KEVAGARAVGFGGDFDGVPRV--PEGLEDVSKYPDLIAELLRRNWT  318 (369)
T ss_dssp             HHHHCGGGEEECCCTTSCSCC--CBTCSSTTCHHHHHHHHHHTTCC
T ss_pred             HHHCCCCEEEECCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             986195227877577899999--88877877889999999986999


No 189
>>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} (A:)
Probab=22.12  E-value=54  Score=14.05  Aligned_cols=121  Identities=14%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             823579999999970775189850544534532----5899999999998533586899815462344689998741070
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVDRDDLDDG----GAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKP  189 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~Dg----GA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~p  189 (329)
                      |.+--.+.+++.++.|-+.+..-.-.-+.++.+    |...+.......++..    +.+++-=|  +.++++.+.+-- 
T Consensus        35 ~~~~a~~~i~~a~~~ga~~vkfq~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G----i~~~~t~~--d~~~~~~l~~~~-  107 (262)
T 1zco_A           35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYG----LVTVTEVM--DTRHVELVAKYS-  107 (262)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHT----CEEEEECC--CGGGHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC----EEEEEEEC--CHHHHHHHCCEE-
T ss_conf             99999999999998403111464345656644355651178999998775315----11466635--176554324655-


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf             2332013830002756389703589999999999708916701404887642068899999999966993
Q gi|254780676|r  190 DVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVD  259 (329)
Q Consensus       190 dV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvd  259 (329)
                                    +.+.-++.=-+...+|+.+...+.-+.-|||.|    -|.+|+..++.-+++.|..
T Consensus       108 --------------~~~kI~S~~~~n~~lL~~~a~~~kPvil~s~g~----~~~~e~~~a~~~i~~~Gn~  159 (262)
T 1zco_A          108 --------------DILQIGARNSQNFELLKEVGKVENPVLLKRGMG----NTIQELLYSAEYIMAQGNE  159 (262)
T ss_dssp             --------------SEEEECGGGTTCHHHHHHHTTSSSCEEEECCTT----CCHHHHHHHHHHHHTTTCC
T ss_pred             --------------EEEEECHHHCCCHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHHHHCCCC
T ss_conf             --------------899955143022799998751686089855532----0266666455575226974


No 190
>>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A (A:)
Probab=22.01  E-value=54  Score=14.03  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCEEEEEC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             775189850-------54453453258999999999985335868998
Q gi|254780676|r  129 KLSHVVITS-------VDRDDLDDGGAQHFAEVISAIRESAPSTTIEV  169 (329)
Q Consensus       129 ~Lk~vViTS-------V~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEv  169 (329)
                      +-++||||.       -+|||+-..-+..+.+..+.|++.+|+..|=+
T Consensus        72 ~aD~Vii~~~~~~~~~~~~~~~l~~n~~i~~~i~~~i~~~~p~a~iiv  119 (317)
T 2ewd_A           72 GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC  119 (317)
T ss_dssp             TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             450356411345689976777877778899999999997499816999


No 191
>>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} (A:128-502)
Probab=21.94  E-value=54  Score=14.02  Aligned_cols=18  Identities=11%  Similarity=0.106  Sum_probs=9.4

Q ss_pred             HHHHCCCCEEECCHHCCC
Q ss_conf             999669939975022278
Q gi|254780676|r  252 DLRTADVDFLTMGQYLQP  269 (329)
Q Consensus       252 DLr~~gvdilTiGQYL~P  269 (329)
                      -+..-|.-+|-.||.+--
T Consensus       319 ~~~~~G~p~i~~G~E~g~  336 (375)
T 1j0h_A          319 QLTFTGSPCIYYGDEIGM  336 (375)
T ss_dssp             HHHSSSCCEEETTGGGTC
T ss_pred             HHHCCCCCEEECCHHCCC
T ss_conf             982899658866443275


No 192
>>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural genomics, midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} (A:59-113)
Probab=21.88  E-value=47  Score=14.44  Aligned_cols=27  Identities=11%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             EEEEE-ECHHHHHHHHHHHHHCCCCEEE
Q ss_conf             88764-2068899999999966993997
Q gi|254780676|r  236 MLGLG-ETRNEILQLMDDLRTADVDFLT  262 (329)
Q Consensus       236 MvGLG-Et~eEi~e~l~DLr~~gvdilT  262 (329)
                      =+|+. ++.+||-+...-|++.||.|+.
T Consensus         5 HiaF~v~s~~eVd~~~~~l~a~Gv~i~~   32 (55)
T 1xqa_A            5 HVGFPQESEEQVDKINQRLKEDGFLVEP   32 (55)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHTTCCCCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHCCEEEEC
T ss_conf             0344302332013344468767827723


No 193
>>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:1-17,A:202-511)
Probab=21.52  E-value=55  Score=13.96  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             HHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEECCCCCCC
Q ss_conf             999999966993997502227861007800023846999999999--9749624340483001
Q gi|254780676|r  248 QLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIA--YSKGFLMVSASPLTRS  308 (329)
Q Consensus       248 e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF~~~~~~a--~~~Gf~~V~SgPlVRS  308 (329)
                      +..+--++.||+++-=|      +.|.|..      +-+.-=+.-  +--|+.+-.-||||--
T Consensus       214 eL~~rA~e~gVQvmIEG------PGHvPl~------~I~~nv~l~K~lc~~APfYvLGPLvTD  264 (327)
T 3epo_A          214 ELTKVAWKHGVQVMIEG------PGHVAMH------KIKANMDEQLKHCHEAPFYTLGPLTTD  264 (327)
T ss_dssp             HHHHHHHHTTCCEEEEC------CCBCCHH------HHHHHHHHHHHHTTTCCEEEECCBSCS
T ss_pred             HHHHHHHHHCCCEEECC------CCCCCHH------HHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             99999998099667338------9977889------999999999997179980102861014


No 194
>>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} (A:)
Probab=21.42  E-value=41  Score=14.86  Aligned_cols=27  Identities=19%  Similarity=0.606  Sum_probs=18.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             522353522344678998888235799999999707
Q gi|254780676|r   94 AICTRACTFCNVATGKPQPLDPQEPENISWAVRSMK  129 (329)
Q Consensus        94 ~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~  129 (329)
                      ++-++.|+||.....         |..|.++|++=|
T Consensus        71 ~itq~eC~FCHsE~A---------~~eV~~~I~~~G   97 (109)
T 2hfq_A           71 TVTSEECRFCHSEKA---------PDEVIEAIKQNG   97 (109)
T ss_dssp             CCCTTTBCCCEEEEC---------CHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCC---------CHHHHHHHHHCC
T ss_conf             652220646567659---------989999998598


No 195
>>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} (E:1-62)
Probab=21.06  E-value=39  Score=15.08  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCHHH
Q ss_conf             699999999997496243404830010318
Q gi|254780676|r  283 QDFKSYETIAYSKGFLMVSASPLTRSSYHA  312 (329)
Q Consensus       283 ~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A  312 (329)
                      +-=+...++|.+.|...+.+-||+||=|+-
T Consensus        27 ~~A~~I~~~A~~~gIPi~~~~~LAr~L~~~   56 (62)
T 3c01_E           27 QRALAVRAYAEKVGVPVIVDIKLARSLFKT   56 (62)
T ss_dssp             HHHHHHHHHHHHHTCCEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEECHHHHHHHHHC
T ss_conf             889999999998699499699999999972


No 196
>>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} (A:1-109,A:168-337)
Probab=20.86  E-value=57  Score=13.87  Aligned_cols=30  Identities=7%  Similarity=0.075  Sum_probs=13.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             5325899999999998533586899815462
Q gi|254780676|r  144 DDGGAQHFAEVISAIRESAPSTTIEVLTPDF  174 (329)
Q Consensus       144 ~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf  174 (329)
                      .-|+-+.|.+-|++.++..=.+.+. ++||+
T Consensus        82 ~~G~~~e~~~lv~~~h~~gi~vi~D-~V~DL  111 (279)
T 1mxg_A           82 RFGSKEELVRLIQTAHAYGIKVIAD-VVIHK  111 (279)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEE-ECCTS
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEE-ECCCC
T ss_conf             8999999999999999879999998-33464


No 197
>>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647)
Probab=20.81  E-value=57  Score=13.87  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCC
Q ss_conf             70358999999999970891670140488764206889999999996699
Q gi|254780676|r  209 GARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADV  258 (329)
Q Consensus       209 ~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gv  258 (329)
                      ...-..-|.+++.+++++++.+  ...++-|-|+-.+|++++.=.+++|.
T Consensus       221 s~~~~~~l~~~~~i~~~g~~a~--~~yIIsmt~s~sdiL~v~~L~k~~g~  268 (420)
T 1jqn_A          221 SAETREVLDTCQVIAEAPQGSI--AAYVISMAKTPSDVLAVHLLLKEAGI  268 (420)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTSE--EEEEEETCCSHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCH--HHEEHHCCCCCCHHHHHHHHHHHHCC
T ss_conf             6789999999999998376651--32000135782038999999998398


No 198
>>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (D:85-364)
Probab=20.73  E-value=57  Score=13.85  Aligned_cols=19  Identities=16%  Similarity=0.221  Sum_probs=7.8

Q ss_pred             EEEECCCCCCCHHHHHHHH
Q ss_conf             9981546234468999874
Q gi|254780676|r  167 IEVLTPDFLRKPHALEKVV  185 (329)
Q Consensus       167 IEvLiPDf~G~~~al~~v~  185 (329)
                      |=++.-|.----+|+..+.
T Consensus       171 VLli~DslTr~a~A~reis  189 (280)
T 2ck3_D          171 VLLFIDNIFRFTQAGSEVS  189 (280)
T ss_dssp             EEEEEECTHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHH
T ss_conf             8999736068999987889


No 199
>>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} (A:25-247)
Probab=20.63  E-value=58  Score=13.84  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             89988882357999999997077518985054453453258999999999985335868998154623446899987410
Q gi|254780676|r  108 GKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA  187 (329)
Q Consensus       108 G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A  187 (329)
                      ..|...++..+...+..+.+.|...+.+..-..      ........|++|++..   .+-+..-++-...+.++....+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~------~~~~~~~~i~~i~~~~---~~p~~~~~~i~~~~~~~~~~~~  100 (223)
T 1a53_A           30 KSPSGLDVERDPIEYSKFMERYAVGLSILTEEK------YFNGSYETLRKIASSV---SIPILMKDFIVKESQIDDAYNL  100 (223)
T ss_dssp             BCTTSCBCCCCHHHHHHHHTTTCSEEEEECCCT------TTCCCHHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC------CCCCCHHHHHHHHHCC---CCCEEECCCCCCHHHHHHHHHC
T ss_conf             899988765687999999971985789851665------3113315788885036---7760200100676799999861


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHC
Q ss_conf             70233201383000275638970358999999999970891670140488764206889999999996699399750222
Q gi|254780676|r  188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYL  267 (329)
Q Consensus       188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL  267 (329)
                      +.+.+..+...           .......+.++.++..+..+      +++.+ |.+|    +..+.+.|.|.+.++..-
T Consensus       101 g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~v------~~~~~-~~~~----a~~a~~~g~d~i~~~~~~  158 (223)
T 1a53_A          101 GADTVLLIVKI-----------LTERELESLLEYARSYGMEP------LIEIN-DEND----LDIALRIGARFIGINSRD  158 (223)
T ss_dssp             TCSEEEEEGGG-----------SCHHHHHHHHHHHHTTTCCC------EEEEC-SHHH----HHHHHHTTCSEEEEESBC
T ss_pred             CCCHHHHHHHH-----------CCHHHHHHHHHHHHHHHHHH------HHHCC-CHHH----HHHHHHCCCCEEEEECCC
T ss_conf             54555676863-----------00788899999999986467------77258-9999----999981685705452467


Q ss_pred             C
Q ss_conf             7
Q gi|254780676|r  268 Q  268 (329)
Q Consensus       268 ~  268 (329)
                      .
T Consensus       159 ~  159 (223)
T 1a53_A          159 L  159 (223)
T ss_dssp             T
T ss_pred             H
T ss_conf             6


No 200
>>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A (A:61-151)
Probab=20.51  E-value=58  Score=13.82  Aligned_cols=30  Identities=10%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             ECHHHHHHHHHHHHHCC--CCEEECC--HHCCCC
Q ss_conf             20688999999999669--9399750--222786
Q gi|254780676|r  241 ETRNEILQLMDDLRTAD--VDFLTMG--QYLQPT  270 (329)
Q Consensus       241 Et~eEi~e~l~DLr~~g--vdilTiG--QYL~Ps  270 (329)
                      =|.++|..++.-|+..|  ..+++||  +|+|-.
T Consensus        55 Is~dDi~rAi~~L~~LG~Gf~vi~ig~k~~v~Sv   88 (91)
T 3cuq_A           55 VSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSV   88 (91)
T ss_dssp             CCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEC
T ss_conf             6999999999999984998799998997899968


No 201
>>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} (A:)
Probab=20.44  E-value=58  Score=13.81  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH--HHHHHHHHHHHHHH
Q ss_conf             9726999866522353522344678998888235799999999707751898505445345325--89999999999853
Q gi|254780676|r   84 KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGG--AQHFAEVISAIRES  161 (329)
Q Consensus        84 ~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgG--A~hfa~~I~~Ir~~  161 (329)
                      +.+-+|.++||+                ..+.+.-.++.+.++..+-..+|++.    ||-|.|  +..+.+.++.+.+.
T Consensus         3 ~~~~~i~~isD~----------------H~~~~~~~~~~~~~~~~~~d~vi~~G----Dl~d~~~~~~~~~~~~~~l~~~   62 (228)
T 1uf3_A            3 RTVRYILATSNP----------------XGDLEALEKFVKLAPDTGADAIALIG----NLXPKAAKSRDYAAFFRILSEA   62 (228)
T ss_dssp             CCCCEEEEEECC----------------TTCHHHHHHHHTHHHHHTCSEEEEES----CSSCTTCCHHHHHHHHHHHGGG
T ss_pred             CCCCEEEEEECC----------------CCCHHHHHHHHHHHHHHCCCEEEECC----CCCCCCCCCHHHHHHHHHHHCC
T ss_conf             754589999568----------------78999999999987770999999899----8898876525888753000011


Q ss_pred             CCCCEEEEECCCCCCCHHH
Q ss_conf             3586899815462344689
Q gi|254780676|r  162 APSTTIEVLTPDFLRKPHA  180 (329)
Q Consensus       162 ~P~~~IEvLiPDf~G~~~a  180 (329)
                      ...+   +.+|   ||.|.
T Consensus        63 ~~pv---~~i~---GNHD~   75 (228)
T 1uf3_A           63 HLPT---AYVP---GPQDA   75 (228)
T ss_dssp             CSCE---EEEC---CTTSC
T ss_pred             CCEE---EEEE---CCCCC
T ss_conf             5169---9996---78887


No 202
>>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276)
Probab=20.31  E-value=58  Score=13.79  Aligned_cols=178  Identities=12%  Similarity=0.063  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CCC---------------------HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             8823579999999970775189850544534--532---------------------58999999999985335868998
Q gi|254780676|r  113 LDPQEPENISWAVRSMKLSHVVITSVDRDDL--DDG---------------------GAQHFAEVISAIRESAPSTTIEV  169 (329)
Q Consensus       113 ~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL--~Dg---------------------GA~hfa~~I~~Ir~~~P~~~IEv  169 (329)
                      -|.+.-.+++++++.-|..-|-.-.-.-|.|  ++.                     +...|....+..++.    .+.+
T Consensus        32 g~~e~a~~~i~~a~~aGadavKfQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~----Gi~~  107 (276)
T 2wqp_A           32 GSLKTAFEXVDAAYNAGAEVVKHQTHIVEDEXSDEAKQVIPGNADVSIYEIXERCALNEEDEIKLKEYVESK----GXIF  107 (276)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT----TCEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHCHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHC----CCCC
T ss_conf             769999999999998599999921747278628666642214553322001110000211567899987512----4433


Q ss_pred             ECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHH
Q ss_conf             15462344689998741070233201383000275638970358999999999970891670140488764206889999
Q gi|254780676|r  170 LTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQL  249 (329)
Q Consensus       170 LiPDf~G~~~al~~v~~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~  249 (329)
                      ++.=|  +.++++.+.+.++|+|-            |  .+.=-..+.+|+.+.+.+.-+.-++|..     |.+|+.++
T Consensus       108 ~st~~--d~~~v~~~~~~~v~~~K------------I--~S~~~~n~~LL~~~a~tgkPvilstG~~-----t~~ei~~A  166 (276)
T 2wqp_A          108 ISTLF--SRAAALRLQRXDIPAYK------------I--GSGECNNYPLIKLVASFGKPIILSTGXN-----SIESIKKS  166 (276)
T ss_dssp             EEEEC--SHHHHHHHHHHTCSCEE------------E--CGGGTTCHHHHHHHHTTCSCEEEECTTC-----CHHHHHHH
T ss_pred             CCCCC--CCCHHHHHCCCCCCHHC------------C--CCCCCCCHHHHHHHHHCCCCEEECCCCC-----CCCCCCCE
T ss_conf             33456--44132220133656400------------0--3300133388765675067401024432-----21010000


Q ss_pred             HHHHHHCCCCEEEC---CHHCCCCC-------------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEE---------CCC
Q ss_conf             99999669939975---02227861-------------007800023846999999999974962434---------048
Q gi|254780676|r  250 MDDLRTADVDFLTM---GQYLQPTR-------------KHHKVESFVTPQDFKSYETIAYSKGFLMVS---------ASP  304 (329)
Q Consensus       250 l~DLr~~gvdilTi---GQYL~Ps~-------------~h~pV~ryv~P~eF~~~~~~a~~~Gf~~V~---------SgP  304 (329)
                      +.-+++.|.+++-+   ..|--|-.             -++||.-|-+-..-...--.|..+|-..++         .||
T Consensus       167 v~~i~~~g~~~viLhC~s~yp~~~~~~nL~~i~~lk~~~~~pVIG~sdHs~~~~~~~aAva~GA~viekh~tld~~~~g~  246 (276)
T 2wqp_A          167 VEIIREAGVPYALLHCTNIYPTPYEDVRLGGXNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSILERHFTDRXDRPGP  246 (276)
T ss_dssp             HHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCCEEEEEBCSCTTCCST
T ss_pred             EEEHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf             00012026664378850688653211013443455554133513404520011134788844231025434653034888


Q ss_pred             CCCCCHHHHHH
Q ss_conf             30010318999
Q gi|254780676|r  305 LTRSSYHAGDD  315 (329)
Q Consensus       305 lVRSSY~A~e~  315 (329)
                      =--.|-.-++.
T Consensus       247 D~~~sl~p~el  257 (276)
T 2wqp_A          247 DIVCSXNPDTF  257 (276)
T ss_dssp             TGGGCBCHHHH
T ss_pred             CCCCCCCCHHH
T ss_conf             76453331036


No 203
>>1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} (A:)
Probab=20.14  E-value=59  Score=13.77  Aligned_cols=72  Identities=15%  Similarity=0.062  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEECCCEEEEEEEC------HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             5899999999997089167014048876420------6889999999996699399750222786100780002384699
Q gi|254780676|r  212 YFHSLRLLQRVKELDPLIFTKSGIMLGLGET------RNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDF  285 (329)
Q Consensus       212 Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt------~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~P~eF  285 (329)
                      |..|.++++.++..+.+..  .-...+.+|.      .++-++-|..=.++|+|++.             .|=.+.++.|
T Consensus       124 ~~~s~~Li~~~~~~~~~~~--~igva~~pe~hp~~~~~~~~~~~L~~K~~aGa~~~i-------------TQ~~fd~~~~  188 (296)
T 1v93_A          124 FRYAAELVALIRERYGDRV--SVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAI-------------TQLFFNNAHY  188 (296)
T ss_dssp             CSSHHHHHHHHHHHHGGGS--EEEEEECTTCCTTCSSHHHHHHHHHHHHHTTCSEEE-------------EEECSSHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE-------------EEEECCHHHH
T ss_conf             0149999998787449874--436666887686412489999999999973677478-------------7531468999


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999974962
Q gi|254780676|r  286 KSYETIAYSKGFL  298 (329)
Q Consensus       286 ~~~~~~a~~~Gf~  298 (329)
                      ..|.+...+.|+.
T Consensus       189 ~~~~~~~r~~gi~  201 (296)
T 1v93_A          189 FGFLERARRAGIG  201 (296)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999974999


No 204
>>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} (A:)
Probab=20.13  E-value=59  Score=13.77  Aligned_cols=138  Identities=10%  Similarity=0.019  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCC---C--CCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCC---CCHH-HHHHHH
Q ss_conf             999999997077518985054453---4--532589999999999853358----68998154623---4468-999874
Q gi|254780676|r  119 ENISWAVRSMKLSHVVITSVDRDD---L--DDGGAQHFAEVISAIRESAPS----TTIEVLTPDFL---RKPH-ALEKVV  185 (329)
Q Consensus       119 ~rvA~av~~l~Lk~vViTSV~RDD---L--~DgGA~hfa~~I~~Ir~~~P~----~~IEvLiPDf~---G~~~-al~~v~  185 (329)
                      .+..+..+.||.+++|+-+.....   .  .+..-..+++.++++-+....    ..+|...+.+.   .... .++.+-
T Consensus       107 ~~~~~~a~~lga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~e~~~~~~~~~~~~~~~~~~~~~  186 (287)
T 3kws_A          107 KEIIAAAGELGSTGVIIVPAFNGQVPALPHTXETRDFLCEQFNEXGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCR  186 (287)
T ss_dssp             HHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHH
T ss_conf             99999999809984775145557788887889999999999999999999709879999667768801157898888899


Q ss_pred             HCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC---CCEEEEEEECHHHHHHHHHHHHHCCCCE-E
Q ss_conf             10702332013830002756389703589999999999708916701---4048876420688999999999669939-9
Q gi|254780676|r  186 SAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTK---SGIMLGLGETRNEILQLMDDLRTADVDF-L  261 (329)
Q Consensus       186 ~A~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TK---SGlMvGLGEt~eEi~e~l~DLr~~gvdi-l  261 (329)
                      ..+...+.=++.+.    .....+-   ...+.++.....-..+..|   .+--+.+||-.-+..+.+.-|++.|.+. +
T Consensus       187 ~~~~~~~gl~~D~~----h~~~~~~---~~~~~~~~~~~~i~~iH~~D~~~~~~~~~G~G~id~~~~~~~L~~~gy~g~~  259 (287)
T 3kws_A          187 DINNPGVRCXGDFW----HXTWEET---SDXGAFISGGEYLQHVHVASRKRRSXPGEDGDADNYINGFKGLKXIGYNNYV  259 (287)
T ss_dssp             HHCCTTEEEEEEHH----HHHHHCS---CHHHHHHHHGGGEEEEEECCTTTSCSTTTTGGGCCCHHHHHHHHHTTCCSEE
T ss_pred             HHHCCCCCCEECHH----HHHHHHC---CHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             87403676011147----7778613---4088998506726699987799998899998752299999999985996289


Q ss_pred             EC
Q ss_conf             75
Q gi|254780676|r  262 TM  263 (329)
Q Consensus       262 Ti  263 (329)
                      ++
T Consensus       260 ~~  261 (287)
T 3kws_A          260 SF  261 (287)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99


No 205
>>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} (A:1-91,A:153-349)
Probab=20.09  E-value=59  Score=13.76  Aligned_cols=52  Identities=13%  Similarity=0.090  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC--------------C-CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             82357999999997077518985054--------------4-5345325899999999998533586
Q gi|254780676|r  114 DPQEPENISWAVRSMKLSHVVITSVD--------------R-DDLDDGGAQHFAEVISAIRESAPST  165 (329)
Q Consensus       114 D~~EP~rvA~av~~l~Lk~vViTSV~--------------R-DDL~DgGA~hfa~~I~~Ir~~~P~~  165 (329)
                      |...-..-..-++.||.++|-|+.+-              + ++=.=|..+.|.+-|.+.+++.=.+
T Consensus        19 ~~~~~~~~l~~~~~~g~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~~v~~~h~~gi~v   85 (288)
T 1ht6_A           19 WYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQA   85 (288)
T ss_dssp             HHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             8999999359999749998996988878999897856767778100789999999999999888989


Done!