HHSEARCH alignment of GI: 254780676 and SCOP domain: d1gtea2

Alignment

Probab=90.87  E-value=0.61  Score=25.05  Aligned_cols=76  Identities=9%  Similarity=0.045  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCCCHH------HHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHH
Q ss_conf             235799999999707751898--5054453453258------999999999985335868998-1546234468999874
Q gi|254780676|r  115 PQEPENISWAVRSMKLSHVVI--TSVDRDDLDDGGA------QHFAEVISAIRESAPSTTIEV-LTPDFLRKPHALEKVV  185 (329)
Q Consensus       115 ~~EP~rvA~av~~l~Lk~vVi--TSV~RDDL~DgGA------~hfa~~I~~Ir~~~P~~~IEv-LiPDf~G~~~al~~v~  185 (329)
                      .++-...|+.+...+..++.|  -+.+...+.++|+      ...++.++++|+.. ..-|=+ |.||+....+..+.+.
T Consensus       115 ~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~-~~pv~vKl~~~~~~~~~i~~~~~  193 (312)
T d1gtea2         115 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAK  193 (312)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHH
T ss_conf             26889998875357777476416888742333210134456999999999875335-88656324643004899999998


Q ss_pred             HCCCHH
Q ss_conf             107023
Q gi|254780676|r  186 SAKPDV  191 (329)
Q Consensus       186 ~A~pdV  191 (329)
                      +++.+-
T Consensus       194 ~~g~~g  199 (312)
T d1gtea2         194 EGGADG  199 (312)
T ss_dssp             HHTCSE
T ss_pred             HHCCCC
T ss_conf             735561

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]