HHSEARCH alignment of GI: 254780676 and SCOP domain: d1nvma2

Alignment

Probab=90.21  E-value=0.69  Score=24.66  Aligned_cols=139  Identities=12%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECC---CCCCCCCCH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             888235799999999707751898505---445345325-8999999999985335868998154623446899987410
Q gi|254780676|r  112 PLDPQEPENISWAVRSMKLSHVVITSV---DRDDLDDGG-AQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSA  187 (329)
Q Consensus       112 ~~D~~EP~rvA~av~~l~Lk~vViTSV---~RDDL~DgG-A~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A  187 (329)
                      ....+|-.+++++..++|++++-+.+-   ...+....- ..--.+.++.+....++..|..+..-=.+..+.+....++
T Consensus        25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  104 (289)
T d1nvma2          25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA  104 (289)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999982989999688857654200011013158999999987501357888876302118899999970


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             7023320138300027563897035899999999997089167014048876420688999999999669939975
Q gi|254780676|r  188 KPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTM  263 (329)
Q Consensus       188 ~pdV~nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTi  263 (329)
                      +.+.+.       ...    ...+.+...+.++++|+.+.++.  -++|---.-+.+.+.+..+-+.+.|+|++.|
T Consensus       105 ~~~~~r-------~~~----~~~~~~~~~~~~~~a~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l  167 (289)
T d1nvma2         105 GARVVR-------VAT----HCTEADVSKQHIEYARNLGMDTV--GFLMMSHMIPAEKLAEQGKLMESYGATCIYM  167 (289)
T ss_dssp             TCCEEE-------EEE----ETTCGGGGHHHHHHHHHHTCEEE--EEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCEE-------EEE----EHHHHHHHHHHHHHHHHHCCCEE--EEEEECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             456168-------873----21033667678999997077324--6764023567114467887640221103443

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]