BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (329 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 329

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI 60
           MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI
Sbjct: 1   MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI 60

Query: 61  LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN 120
           LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN
Sbjct: 61  LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN 120

Query: 121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA 180
           ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA
Sbjct: 121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA 180

Query: 181 LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240
           LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG
Sbjct: 181 LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240

Query: 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300
           ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV
Sbjct: 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300

Query: 301 SASPLTRSSYHAGDDFLRLKNNRRQHLHE 329
           SASPLTRSSYHAGDDFLRLKNNRRQHLHE
Sbjct: 301 SASPLTRSSYHAGDDFLRLKNNRRQHLHE 329


>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 294

 Score = 22.7 bits (47), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 2   VTVFDTINKKKHVLHATPNAERLRHP-----EKIHKPDTEK 37
           +T  D  N KK+ L+A   +E++R+       +I K D EK
Sbjct: 144 LTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEK 184


>gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 210

 Score = 22.7 bits (47), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM 205
           G AQH AE  S +   A S    V+  + L+      ++VS         L+    + L+
Sbjct: 45  GTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLL 104

Query: 206 VR 207
           V+
Sbjct: 105 VK 106


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,770
Number of Sequences: 1233
Number of extensions: 8295
Number of successful extensions: 23
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 329
length of database: 328,796
effective HSP length: 74
effective length of query: 255
effective length of database: 237,554
effective search space: 60576270
effective search space used: 60576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)