HHsearch alignment of GI: 254780677 and MMDB domain: 2d4r_A_
>2d4r_A (A:) Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus HB8}
Probab=99.78 E-value=4.5e-17 Score=129.14 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=124.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA 80 (152)
Q Consensus 1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~ 80 (152)
.++++.+++|++|+++||++++|+++|++|+|+|.+++++...+.+ ..+.+.+...+...++.+++....++..+.
T Consensus 1 ~p~i~~~~~i~ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~p~~~i~ 76 (147)
T 2d4r_A 1 XPEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGAR----TRSRWVAVAXGKKVRWLEEEEWDDENLRNR 76 (147)
T ss_dssp -CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred CCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEEEECCCE----EEEEEEEEECCEEEEEEEEEEEECCCCEEE
T ss_conf 9869999998999999999997988777645571899999707997----999999995670787889999954853699
Q ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 312454102113799999879981899999998508878----99999999999999999999999997708
Q gi|254780677|r 81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL----FDMMLKAIFDPSFLSFAKAFEERAHKIYH 148 (152)
Q Consensus 81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~----~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg 148 (152)
+...++++..+.+.|+|++.+ ++|+|+++++|++++++ .+.++...+....+.++++++++|++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~a 147 (147)
T 2d4r_A 77 FFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLXQENVESLLKGLEERVLAASS 147 (147)
T ss_dssp EEEEEESCSEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCEEEEEEEEEECC-CCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 874277500248999999989-98589999999974760778999999999999999999999999987329