HHsearch alignment of GI: 254780677 and MMDB domain: 2ns9_A_

>2ns9_A (A:) Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, protein structure initiative; 1.80A {Aeropyrum pernix}
Probab=99.59  E-value=2e-13  Score=105.76  Aligned_cols=137  Identities=7%  Similarity=0.060  Sum_probs=100.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEE-CCCCCEEEE-
Q ss_conf             248999835987999999875742310187520579997268888419999999623126899988861-576620896-
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVR-INQKEHYIA-   80 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~-~~~~~~~i~-   80 (152)
                      +++.+..|++||+++|++++|+++||+|+|+|.++.++...+   +.  .........+....+..++. ++++..... 
T Consensus        14 ~~~~~~~i~ap~~~Vw~~l~d~~~~~~w~p~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   88 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSF---TI--ELRLSLGPLRGDARVRASFEDLEKPSKATVK   88 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEE---EE--EEEEESSSSEEEEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHCCCHHEEEECCCCC---EE--EEEEEEEEEEEEEEEEEEEEECCCCCCEEEE
T ss_conf             998799978999999999709878764263341025047641---37--9999999975568768898732665412455


Q ss_pred             EE-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31-2454102113799999879981899999998508878---99999999999999999999999997
Q gi|254780677|r   81 VK-HIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL---FDMMLKAIFDPSFLSFAKAFEERAHK  145 (152)
Q Consensus        81 ~~-~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~---~~~~~~~~~~~~~~~~i~aF~~Ra~~  145 (152)
                      +. ...+++..+.++|+|.|.+ ++|+|++.+++++++++   ...++...++......+++++++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  156 (157)
T 2ns9_A           89 GSGRGAGSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEEECSSEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ECCCCCCCCCCEEEEEEEEECC-CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1124664023318999973037-8768999999972850899889999999999999999999999753