Query         gi|254780677|ref|YP_003065090.1| hypothetical protein CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    107 out of 1165
Neff          8.3 
Searched_HMMs 33803
Date          Wed Jun  1 14:51:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780677.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1t17_A Conserved hypothetical  99.9 1.5E-20 4.5E-25  151.3  16.1  148    1-149     1-148 (148)
  2 >2d4r_A Hypothetical protein T  99.8 4.5E-17 1.3E-21  129.1  18.0  143    1-148     1-147 (147)
  3 >2kf2_A Putative polyketide cy  99.8 3.3E-17 9.8E-22  130.0  14.4  148    1-151     1-152 (167)
  4 >2rer_A Multifunctional cyclas  99.7 7.9E-16 2.3E-20  121.2  18.0  147    1-150     5-158 (173)
  5 >3jrs_A PYL1, putative unchara  99.7 4.5E-16 1.3E-20  122.7  12.4  147    1-148     6-160 (161)
  6 >2pcs_A Conserved protein; str  99.7 5.9E-15 1.7E-19  115.6  17.9  146    1-150     1-153 (162)
  7 >3ggn_A Uncharacterized protei  99.7   3E-15 8.7E-20  117.5  14.2  141    1-147     3-144 (155)
  8 >3k3k_A Abscisic acid receptor  99.7 1.2E-15 3.6E-20  120.0  10.7  145    1-146     6-155 (168)
  9 >3kdh_A PYL2, putative unchara  99.6 1.5E-14 4.4E-19  113.0  15.0  146    1-148     6-158 (162)
 10 >3f08_A Uncharacterized protei  99.6 5.5E-14 1.6E-18  109.4  16.5  141    1-148     1-145 (146)
 11 >3ijt_A SMU.440, putative unch  99.6 3.5E-14   1E-18  110.7  14.2  138    1-146    17-155 (155)
 12 >2ns9_A Hypothetical protein A  99.6   2E-13   6E-18  105.8  16.5  137    3-145    14-156 (157)
 13 >2qpv_A Uncharacterized protei  99.5 8.6E-13 2.6E-17  101.7  13.3  130    1-145    26-155 (156)
 14 >1xuv_A Hypothetical protein M  99.4 2.2E-11 6.5E-16   92.8  17.1  146    1-149    21-171 (178)
 15 >2vq5_A S-norcoclaurine syntha  99.4 1.7E-11 5.1E-16   93.4  12.7  137    3-142    30-175 (201)
 16 >2flh_A Cytokinin-specific bin  99.3 1.3E-10 3.7E-15   87.9  14.2  140    1-142     1-149 (155)
 17 >1z94_A Conserved hypothetical  99.3 5.1E-10 1.5E-14   84.0  15.1  138    2-145     3-143 (147)
 18 >1icx_A Protein LLR18A, LLPR10  99.1 4.5E-09 1.3E-13   78.0  15.5  140    3-144     4-150 (155)
 19 >2il5_A Hypothetical protein;   99.1 1.7E-08 5.2E-13   74.2  17.6  116    2-118    14-131 (171)
 20 >1jss_A Stard4, cholesterol-re  99.1 9.7E-09 2.9E-13   75.9  14.2  143    2-145    67-223 (224)
 21 >1tw0_A Pathogenesis-related c  99.0 4.6E-07 1.4E-11   65.1  21.4  114    3-118     4-124 (157)
 22 >2kew_A Uncharacterized protei  99.0 4.1E-10 1.2E-14   84.7   5.4  133    1-151     9-150 (152)
 23 >2qim_A PR10.2B; trans-zeatin,  99.0 3.1E-07   9E-12   66.3  19.4  139    1-141     1-149 (158)
 24 >2vjg_A Major allergen DAU C 1  98.9 3.2E-07 9.6E-12   66.1  18.1  114    1-117     1-124 (154)
 25 >2i9y_A Major latex protein-li  98.9 1.3E-08 3.9E-13   75.0  10.9  116    1-118    16-139 (166)
 26 >1xn6_A Hypothetical protein B  98.8 1.7E-08 5.1E-13   74.3   8.6  128    1-144     7-142 (143)
 27 >1fm4_A Major pollen allergen   98.8 1.1E-06 3.2E-11   62.8  16.4  112    3-117     4-124 (159)
 28 >1xfs_A NC_840354, conserved h  98.8 1.6E-06 4.6E-11   61.7  16.8  146    3-151    11-172 (178)
 29 >3eli_A AHSA1, AHA1 domain pro  98.7 7.8E-07 2.3E-11   63.7  13.0  141    2-150     2-150 (152)
 30 >3fo5_A Thioesterase, adipose   98.7 7.2E-07 2.1E-11   63.9  12.4  145    2-148    88-249 (258)
 31 >2r55_A STAR-related lipid tra  98.7 3.7E-06 1.1E-10   59.4  15.9  145    2-146    67-229 (231)
 32 >1xn5_A BH1534 unknown conserv  98.7 1.6E-07 4.7E-12   68.1   8.8  102    1-119     4-105 (146)
 33 >1ln1_A PC-TP, phosphatidylcho  98.7 4.6E-06 1.4E-10   58.7  16.2  142    2-146    52-210 (214)
 34 >1e09_A PRU AV 1; allergen, ma  98.6 7.1E-06 2.1E-10   57.6  16.4  139    3-143     4-151 (159)
 35 >3ie5_A Phenolic oxidative cou  98.6 1.5E-05 4.4E-10   55.5  17.7  115    1-118     7-131 (165)
 36 >2e3n_A Lipid-transfer protein  98.5 2.5E-05 7.3E-10   54.1  16.4  148    1-149    72-250 (255)
 37 >1em2_A MLN64 protein; beta ba  98.5   2E-05 5.9E-10   54.7  15.7  144    2-146    66-226 (229)
 38 >2pso_A STAR-related lipid tra  98.4 1.3E-05 3.9E-10   55.8  13.6  134    2-138    25-171 (187)
 39 >2nn5_A Hypothetical protein E  98.4 7.4E-06 2.2E-10   57.4  11.5  128    1-149    35-162 (184)
 40 >2k5g_A Uncharacterized protei  98.3 6.3E-06 1.9E-10   57.9   9.7  116    2-120    19-142 (191)
 41 >1zxf_A CALC; SELF-sacrificing  97.9 0.00014 4.2E-09   49.3  10.2  139    2-148     4-153 (155)
 42 >1x53_A Activator of 90 kDa he  97.9 0.00013 3.7E-09   49.5   8.9  126    2-146    11-138 (145)
 43 >2ffs_A Hypothetical protein P  88.7     1.8 5.3E-05   23.0  15.4  107    3-118     2-119 (157)
 44 >2ejx_A ST0812; arcaea, unknow  80.8     4.1 0.00012   20.7  15.6  123    1-140     4-127 (139)
 45 >1vjh_A BET V I allergen famil  76.7     5.5 0.00016   19.9   7.4   47   72-118    43-94  (122)
 46 >1nz9_A Transcription antiterm  25.6      43  0.0013   14.2   3.7   30   81-110    11-40  (58)
 47 >2jz5_A Uncharacterized protei  20.7      54  0.0016   13.6   3.4   21  131-151    26-46  (91)

No 1  
>>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural genomics, protein structure initiative; NMR {Caulobacter crescentus CB15} (A:)
Probab=99.87  E-value=1.5e-20  Score=151.30  Aligned_cols=148  Identities=25%  Similarity=0.442  Sum_probs=138.8

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |++++.+.+|++||+++|++++|+++|++|+|+|.+++++...++..+......+.+...+...++..++....++..+.
T Consensus         1 M~~~~~~~~i~ap~e~vw~~~~d~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (148)
T 1t17_A            1 MHRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVRRDKDARSID   80 (148)
T ss_dssp             CCEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEEEETTTCEEE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEE
T ss_conf             98327899817999999999998865556563427646875466445543100567776100006999853147734899


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             312454102113799999879981899999998508878999999999999999999999999977089
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYHL  149 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~  149 (152)
                      +....+++..+.+.|+|++.+ ++|+|++.+++++++++.+.++..+++....+++++|++++++++|-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~~~  148 (148)
T 1t17_A           81 VSLLYGPFKRLNNGWRFMPEG-DATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHGA  148 (148)
T ss_dssp             EEESSTTSSCEEEEEEEEEET-TEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EECCCCHHHHCCCCEEECCCC-CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             960660665236505532588-84499999999757589999999999999999999999999997393


No 2  
>>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus HB8} (A:)
Probab=99.78  E-value=4.5e-17  Score=129.14  Aligned_cols=143  Identities=13%  Similarity=0.209  Sum_probs=124.4

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      .++++.+++|++|+++||++++|+++|++|+|+|.+++++...+.+    ..+.+.+...+...++.+++....++..+.
T Consensus         1 ~p~i~~~~~i~ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~p~~~i~   76 (147)
T 2d4r_A            1 XPEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGAR----TRSRWVAVAXGKKVRWLEEEEWDDENLRNR   76 (147)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEEEECCCE----EEEEEEEEECCEEEEEEEEEEEECCCCEEE
T ss_conf             9869999998999999999997988777645571899999707997----999999995670787889999954853699


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             312454102113799999879981899999998508878----99999999999999999999999997708
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL----FDMMLKAIFDPSFLSFAKAFEERAHKIYH  148 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~----~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg  148 (152)
                      +...++++..+.+.|+|++.+ ++|+|+++++|++++++    .+.++...+....+.++++++++|++.|.
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~a  147 (147)
T 2d4r_A           77 FFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLXQENVESLLKGLEERVLAASS  147 (147)
T ss_dssp             EEEEEESCSEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCCCCEEEEEEEEEECC-CCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             874277500248999999989-98589999999974760778999999999999999999999999987329


No 3  
>>2kf2_A Putative polyketide cyclase; aromatase/cyclase, ARO/CYC, structural genomics, PSI-2, protein structure initiative; NMR {Streptomyces coelicolor A3} (A:)
Probab=99.76  E-value=3.3e-17  Score=129.97  Aligned_cols=148  Identities=11%  Similarity=0.208  Sum_probs=126.8

Q ss_pred             CC-CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEE
Q ss_conf             97-24899983598799999987574231018752057999726888841999999962312689998886157662089
Q gi|254780677|r    1 MY-HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYI   79 (152)
Q Consensus         1 M~-~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i   79 (152)
                      |+ +++.++.|++|++++|++++|+++|++|.|+|.+++++...+.+.+.  ...+.+..++...++..++....++..+
T Consensus         1 M~~~i~~~~~i~ap~e~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (167)
T 2kf2_A            1 MAGHTDNEITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRDDDKVTF--RLTMHPDADGKVWSWVSERVADPVTRTV   78 (167)
T ss_dssp             CCEEEEEEEEECSCHHHHHHHHHCGGGGGGTCTTCSEEEEEEEETTEEEE--EEECCCCTTSCCCEEEEEEEEETTTTEE
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEEECCCCCCEE--EEEEEECCCCEEEEEEEEEEECCCCEEE
T ss_conf             99878889996899999999997866677656673599999537996579--9999965575787423899974894799


Q ss_pred             EEECC-CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             63124-5410211379999987998189999999850887--899999999999999999999999997708999
Q gi|254780677|r   80 AVKHI-KNLFNFLENHWHFEEISESKCKVHFSIKYELKNR--LFDMMLKAIFDPSFLSFAKAFEERAHKIYHLPS  151 (152)
Q Consensus        80 ~~~~~-~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~--~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~~~  151 (152)
                      .+... .+++..+.+.|+|+|.++ +|+|++.++++++.+  +++.+++..++....+++++++++++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~~~~~  152 (167)
T 2kf2_A           79 RAQRVETGPFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGERR  152 (167)
T ss_dssp             EEEESSCSSEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCCEEEEEEEEECCC-CEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999504875545189999981589-76999999999769816679999999988899999999999997632568


No 4  
>>2rer_A Multifunctional cyclase-dehydratase-3-O-methyl transferase TCMN; aromatase, polyketide, helix-GRIP, anticancer, antibiotic; 1.90A {Streptomyces glaucescens} (A:)
Probab=99.73  E-value=7.9e-16  Score=121.18  Aligned_cols=147  Identities=13%  Similarity=0.237  Sum_probs=115.5

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |.+++.+..|++||+++|++++|+++|++|.|+|.+++++...+.+.+.  ...+.++..+...++..++....+++.+.
T Consensus         5 m~~~~~~~~i~ap~e~Vw~~l~d~~~~~~w~p~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (173)
T 2rer_A            5 AARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDF--RLKTRPDANGRVWEWVSHRVPDKGSRTVR   82 (173)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEE--EEEECCCTTSCCCEEEEEEEEEGGGTEEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEEEECCCCEEE--EEEEEECCCCEEEEEEEEEEEECCCCEEE
T ss_conf             8555779997899999999987867676647152399998515995499--99999634210157899999967872999


Q ss_pred             EECC-CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCC
Q ss_conf             3124-54102113799999879981899999998508878--9999999999999999999----999999770899
Q gi|254780677|r   81 VKHI-KNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL--FDMMLKAIFDPSFLSFAKA----FEERAHKIYHLP  150 (152)
Q Consensus        81 ~~~~-~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~--~~~~~~~~~~~~~~~~i~a----F~~Ra~~~yg~~  150 (152)
                      +... .+++..+.+.|+|++.+ ++|+|+++.+|+++.++  ...++...++.....++++    ++.++.+.++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~e~~~~~~~~~~  158 (173)
T 2rer_A           83 AHRVETGPFAYMNLHWTYRAVA-GGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQRTP  158 (173)
T ss_dssp             EEESSCTTEEEEEEEEEEEEET-TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEEECCCCCCCEEEEEEEEECC-CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9850476653207999999869-972799999999778765557899999987789999999999985500267998


No 5  
>>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid; HET: A8S; 2.05A {Arabidopsis thaliana} (A:48-208)
Probab=99.69  E-value=4.5e-16  Score=122.72  Aligned_cols=147  Identities=4%  Similarity=-0.051  Sum_probs=118.7

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |.+++.+..|++||+++|++++|+++||+|+|+|.+++++...+.+-+......+..+......... ....+++++.+.
T Consensus         6 m~~i~~~~~I~ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (161)
T 3jrs_A            6 RCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRER-LDLLDDDRRVTG   84 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEE-EEEEETTTTEEE
T ss_pred             EEEEEEEEEECCCHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEE-EEEECCCCCEEE
T ss_conf             2744368884499999988875559988878756469987488887403999995057784689988-764554258899


Q ss_pred             EECCCC--CEEEEEEEEEEEECCCCCEEEEEE------EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             312454--102113799999879981899999------99850887899999999999999999999999997708
Q gi|254780677|r   81 VKHIKN--LFNFLENHWHFEEISESKCKVHFS------IKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYH  148 (152)
Q Consensus        81 ~~~~~g--~f~~~~g~W~f~~~~~~~t~V~~~------l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg  148 (152)
                      +...+|  +|..+.+.|+|++.++|+|.+...      ....+..++...++...+....+.++++++++|+.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE~~a~  160 (161)
T 3jrs_A           85 FSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMNR  160 (161)
T ss_dssp             EEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEECCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9996688652115889999867886522311399998157668999778999999999999989999999887535


No 6  
>>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI- 2, protein structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus HTA426} (A:)
Probab=99.69  E-value=5.9e-15  Score=115.59  Aligned_cols=146  Identities=12%  Similarity=0.065  Sum_probs=118.7

Q ss_pred             CC-CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEE
Q ss_conf             97-24899983598799999987574231018752057999726888841999999962312689998886157662089
Q gi|254780677|r    1 MY-HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYI   79 (152)
Q Consensus         1 M~-~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i   79 (152)
                      |+ +++.++.|++||++||++++|+++|++|+|+|.+++++...+.    ...........+....+..++....++..+
T Consensus         1 M~~~i~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~   76 (162)
T 2pcs_A            1 MSLNGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKY----KADLQIGIAAVKGKYDAIIEVTDIKPPYHY   76 (162)
T ss_dssp             --CEEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEE----EEEEEECCGGGCEEEEEEEEEEEEETTTEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHCCHHHHHHHCCCCEEEEECCCCCE----EEEEEEEECCEEEEEEEEEEEEECCCCCEE
T ss_conf             9471675699579999999997299998734815302254599819----999999652258899999999624553214


Q ss_pred             EEEC---CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6312---454102113799999879981899999998508878---9999999999999999999999999770899
Q gi|254780677|r   80 AVKH---IKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL---FDMMLKAIFDPSFLSFAKAFEERAHKIYHLP  150 (152)
Q Consensus        80 ~~~~---~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~---~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~~  150 (152)
                      .+..   ..+++..+.+.|+|.+.++|+|+|++.++|++++++   ...++...++.....++++++++++..-+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~~~~  153 (162)
T 2pcs_A           77 KLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQEA  153 (162)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             EEEECCCCCHHHHHCCEEEEEECCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             67503433201232110588830577735999999998575799988999999999999999999999866678878


No 7  
>>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A (A:)
Probab=99.67  E-value=3e-15  Score=117.51  Aligned_cols=141  Identities=8%  Similarity=0.034  Sum_probs=115.1

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |.+++.++.|++||+++|++++|+++||+|+|+|.+++++...      .....+....++....+..++....+++.+.
T Consensus         3 m~~i~~~~~i~ap~~~Vw~~l~d~~~~~~w~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (155)
T 3ggn_A            3 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDK------RSRWTVEAPAPLGTVSWEAELTADEPGKRIA   76 (155)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSSS------EEEEEEECCTTTCEEEEEEEEEEEETTTEEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEECCC------CCEEEEEEEECCCCEEEEEEEEECCCCCEEE
T ss_conf             6599999997999999999985976636446682389871578------7257888641156347877764145211488


Q ss_pred             EECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             31245410211379999987-99818999999985088789999999999999999999999999770
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEI-SESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIY  147 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~-~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~y  147 (152)
                      +....|++..+.+.|++... .+++|+|++.++|+++++++..+.++++......+++++.++.+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  144 (155)
T 3ggn_A           77 WRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQ  144 (155)
T ss_dssp             EEECTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87602797431579999853876431899988314650048999999999999999999999999998


No 8  
>>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, ABA, ABA sensor, drought tolerance, plant development, SEED dormancy; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3k90_A* 3jrq_B* 3kdj_A* (A:44-211)
Probab=99.65  E-value=1.2e-15  Score=119.98  Aligned_cols=145  Identities=6%  Similarity=-0.047  Sum_probs=118.5

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |..++.+..|++|++++|++++|+++||+|+|+|.++.++++.+.+.+......+..+......... .+..+++...+.
T Consensus         6 ~~~i~~s~~I~Ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (168)
T 3k3k_A            6 SCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTER-LDILDDERRVTG   84 (168)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEEE-EEEEETTTTEEE
T ss_pred             CEEHHEEEEECCCHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEEEEE-EEEECCCCCEEE
T ss_conf             4201213663599999988874549987878735368986388888531899997447777468999-976867688899


Q ss_pred             EECCCC--CEEEEEEEEEEEEC---CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             312454--10211379999987---9981899999998508878999999999999999999999999977
Q gi|254780677|r   81 VKHIKN--LFNFLENHWHFEEI---SESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKI  146 (152)
Q Consensus        81 ~~~~~g--~f~~~~g~W~f~~~---~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~  146 (152)
                      +...+|  ++..+.+.|.+.+.   ++++|.|++..+|+++.++...+++.+++...+.++++++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E~~  155 (168)
T 3k3k_A           85 FSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAM  155 (168)
T ss_dssp             EEEEEETTGGGTCEEEEEEEEEEETTEEEEEEEEEEEEECCSSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99966887610368999998522699865999999983479998778899999999997799999999999


No 9  
>>3kdh_A PYL2, putative uncharacterized protein AT2G26040; hormone receptor; 1.65A {Arabidopsis thaliana} PDB: 3kdi_A* (A:29-190)
Probab=99.64  E-value=1.5e-14  Score=113.02  Aligned_cols=146  Identities=5%  Similarity=0.005  Sum_probs=115.9

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |..++.+..|++||+++|++++|+++||+|+|+|.+++++..+...+.... ... ...++...........++++..+.
T Consensus         6 ~~~v~~s~~I~Ap~e~Vw~~l~d~~~~~~w~p~i~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 3kdh_A            6 TCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE-VTV-ISGLPASTSTERLEFVDDDHRVLS   83 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEE-EEE-CSSSCCEEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEEECCCHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCEEEE-EEE-EECCCCCEEEEEEEEECCCCCEEE
T ss_conf             071446888519999999988663997787774536998637899866999-999-703686079999998967788899


Q ss_pred             EECCCCC--EEEEEEEEEEEECCCCCEEEEEEEEE-----EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3124541--02113799999879981899999998-----50887899999999999999999999999997708
Q gi|254780677|r   81 VKHIKNL--FNFLENHWHFEEISESKCKVHFSIKY-----ELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYH  148 (152)
Q Consensus        81 ~~~~~g~--f~~~~g~W~f~~~~~~~t~V~~~l~f-----e~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg  148 (152)
                      +...+|+  +..+.+.|.+.++++++|.+..+..+     .+..++...++...+++....++++++++|++.--
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~~~a  158 (162)
T 3kdh_A           84 FRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPM  158 (162)
T ss_dssp             EEECSCCSSSCSCEEEEEEEEECCCSSSCCEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999747322168999999997478877754599999897148999775889999999998246999999875540


No 10 
>>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovarkonkukian} PDB: 3cnw_A (A:)
Probab=99.62  E-value=5.5e-14  Score=109.38  Aligned_cols=141  Identities=14%  Similarity=0.138  Sum_probs=105.9

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      .++++.+..|++|+++||++++|+++||+|+|+|.+++++....       ........++.............+...+.
T Consensus         1 ~a~i~~~~~i~ap~~~Vw~~l~d~~~~~~w~p~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (146)
T 3f08_A            1 XAHTTTSXEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEGGR-------VRHLANPDGETIIERLEVFNDKERYYTYS   73 (146)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGGGT-------EEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC-------EEEEEECCCCEEEEEEEEEECCCCEEEEE
T ss_conf             98389999995899999997657176001058788898845986-------89999608965579999981688639999


Q ss_pred             EECCCCCEEEEEEEEEEEECCCC-CEEEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             31245410211379999987998-189999999850887---899999999999999999999999997708
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISES-KCKVHFSIKYELKNR---LFDMMLKAIFDPSFLSFAKAFEERAHKIYH  148 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~-~t~V~~~l~fe~~~~---~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg  148 (152)
                      +...++++..+.+.|+|.+.++| +|+|++.+++++...   +...+++..++..+.++-+.+++|+...+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~~~~~a  145 (146)
T 3f08_A           74 IXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDEEAINLVHGIYSDGLKALQHAFLDLEHHHHH  145 (146)
T ss_dssp             EEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             EEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             995585508775079999616899489999999961899989999999999999999999875076322357


No 11 
>>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} PDB: 2b79_A (A:)
Probab=99.61  E-value=3.5e-14  Score=110.66  Aligned_cols=138  Identities=7%  Similarity=0.022  Sum_probs=110.1

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |.+++.+..|++||+++|++++|+++||+|+|+|..+++......+  ..  ..+.++..+..   ..++....+++.+.
T Consensus        17 ~~~~~~~~~i~ap~e~vw~~l~d~~~~~~w~~~~~~~~~~~~~~~g--~~--~~~~~~~~~~~---~~~i~~~~~~~~~~   89 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTG--QK--GKMKMEDMPEL---AFTLVEVRENQCFS   89 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTT--CE--EEEEETTSCCE---EEEECCCBTTTEEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC--EE--EEEECCCCCEE---EEEEEEECCCEEEE
T ss_conf             4799999998399999999887656563445547998744877544--89--99981898667---89999956984999


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3124541021137999998799818999999985088-78999999999999999999999999977
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN-RLFDMMLKAIFDPSFLSFAKAFEERAHKI  146 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~-~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~  146 (152)
                      +...+ ++..+.+.|+|.|.++|+|+|++.++++..+ ++.+.++....+......+++|+++++.|
T Consensus        90 ~~~~~-~~~~~~~~~~~~~~~~g~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~l  155 (155)
T 3ijt_A           90 DLTAT-PFGNVLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILETV  155 (155)
T ss_dssp             EEEEE-TTEEEEEEEEEEECTTSCEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC-
T ss_pred             EEECC-CCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99567-8720057999702689938999999972565366899999999987999999999996389


No 12 
>>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, protein structure initiative; 1.80A {Aeropyrum pernix} (A:)
Probab=99.59  E-value=2e-13  Score=105.76  Aligned_cols=137  Identities=7%  Similarity=0.060  Sum_probs=100.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEE-CCCCCEEEE-
Q ss_conf             248999835987999999875742310187520579997268888419999999623126899988861-576620896-
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVR-INQKEHYIA-   80 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~-~~~~~~~i~-   80 (152)
                      +++.+..|++||+++|++++|+++||+|+|+|.++.++...+   +.  .........+....+..++. ++++..... 
T Consensus        14 ~~~~~~~i~ap~~~Vw~~l~d~~~~~~w~p~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   88 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSF---TI--ELRLSLGPLRGDARVRASFEDLEKPSKATVK   88 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEE---EE--EEEEESSSSEEEEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHCCCHHEEEECCCCC---EE--EEEEEEEEEEEEEEEEEEEEECCCCCCEEEE
T ss_conf             998799978999999999709878764263341025047641---37--9999999975568768898732665412455


Q ss_pred             EE-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31-2454102113799999879981899999998508878---99999999999999999999999997
Q gi|254780677|r   81 VK-HIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL---FDMMLKAIFDPSFLSFAKAFEERAHK  145 (152)
Q Consensus        81 ~~-~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~---~~~~~~~~~~~~~~~~i~aF~~Ra~~  145 (152)
                      +. ...+++..+.++|+|.|.+ ++|+|++.+++++++++   ...++...++......+++++++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  156 (157)
T 2ns9_A           89 GSGRGAGSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEEECSSEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ECCCCCCCCCCEEEEEEEEECC-CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1124664023318999973037-8768999999972850899889999999999999999999999753


No 13 
>>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} (A:)
Probab=99.49  E-value=8.6e-13  Score=101.75  Aligned_cols=130  Identities=7%  Similarity=-0.093  Sum_probs=96.2

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |+.++.+..|++||++||++++|+++||+|+|+|.+++++...      ..  .+.   .+....+..+++...+++.+.
T Consensus        26 ~~~i~~sv~I~ap~e~V~~~l~D~~~~~~w~~~~~~v~~~~g~------~~--~~~---~~~~~~~~~~v~~~~p~~~i~   94 (156)
T 2qpv_A           26 XQSRIIHLSVEKPWAEVYDFAANPGNXPRWAAGLAGGLEADGE------DW--IAK---GGPLGEVRVNFAPHNEFGVID   94 (156)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETT------EE--EEE---CSSSCEEEEEECCCCSSCBCC
T ss_pred             CCCEEEEEEECCCHHHHHHHHHCHHHHHHHHHHCCEEEEECCC------CE--EEE---ECCCCCEEEEEEECCCCCEEE
T ss_conf             6515999996699999999986944445787520325773488------47--996---078860799999858995999


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31245410211379999987998189999999850887899999999999999999999999997
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHK  145 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~  145 (152)
                      +...+|++......|++.+.+ ++|+|++.++|....  +..++.. ..+.++..++.|++++++
T Consensus        95 ~~~~~g~~~~~~~~~~~~~~g-~gt~v~~~~~~~p~~--~~~~~~~-~~~~~~~~L~~lk~~~Ea  155 (156)
T 2qpv_A           95 HVVTLPDGLKVYNALRVTPNG-SGTEVSFTLLRLEGX--TDEDFEQ-DASAITADLEXLKSLLEA  155 (156)
T ss_dssp             EEEECTTSCEEEEEEEEEEET-TEEEEEEEEECCTTC--CHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCEEEEEEEECCCC-CEEEEEEEEECCCCC--CHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf             996369997888999987599-808999998649998--6788774-899999999999998627


No 14 
>>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} (A:)
Probab=99.44  E-value=2.2e-11  Score=92.76  Aligned_cols=146  Identities=10%  Similarity=-0.016  Sum_probs=110.7

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCCCEEE
Q ss_conf             9724899983598799999987574231018752057999726888841999999962312689998886-157662089
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQKEHYI   79 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~~~~i   79 (152)
                      +..++.++.|++||++||++++|.++||+|+|++..+..+...+.+.+..+...+... .+....+..++ .++++.+ +
T Consensus        21 ~~~v~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~g~~~~~~~~i~~~~p~~~-~   98 (178)
T 1xuv_A           21 KQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDP-EGNEYAFHGVNHDVTEPER-I   98 (178)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECT-TSCEEEEEEEEEEEETTTE-E
T ss_pred             CCEEEEEEEECCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEECC-CCCEEEEEEEEEEECCCCE-E
T ss_conf             8679999996899999999974989985302899936236778621185599999737-8970357999998359978-9


Q ss_pred             EEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             631----2454102113799999879981899999998508878999999999999999999999999977089
Q gi|254780677|r   80 AVK----HIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYHL  149 (152)
Q Consensus        80 ~~~----~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~  149 (152)
                      .+.    ...+++....+.|+|+|.++| |.+.+..............+....+.....+++.+++.++.....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Lk~~~E~~~~~  171 (178)
T 1xuv_A           99 ISTFEFEGLPEKGHVILDTARFEALPGD-RTKLTSHSVFQTIEDRDGXLQSGXEEGINDSYERLDELLEKXKKL  171 (178)
T ss_dssp             EEEEEETTSSSSCCCEEEEEEEEEETTT-EEEEEEEEECSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEEEEEEECCCCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9998516788888647999998526898-589999962899899999999779999999999999999856771


No 15 
>>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* (A:)
Probab=99.37  E-value=1.7e-11  Score=93.44  Aligned_cols=137  Identities=14%  Similarity=0.173  Sum_probs=99.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHH---CHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCCCEE
Q ss_conf             248999835987999999875742---31018752057999726888841999999962312689998886-15766208
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLVSDIER---YPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQKEHY   78 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV~Dve~---YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~~~~   78 (152)
                      +++.+..|++||+++|++++|+++   ||+|+|.+.++..++.++..+ ....  +...-++-......+. ..|..++.
T Consensus        30 ~v~~~~~I~apae~VW~~i~df~~~~~~p~~~p~~~~~~~leg~g~~G-~iR~--~~~~~g~~~~~v~Erl~~~D~~~~~  106 (201)
T 2vq5_A           30 VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVG-TILD--XTFVPGEFPHEYKEKFILVDNEHRL  106 (201)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEESSSSTT-CEEE--EECCTTCSSCEEEEEEEEEETTTTE
T ss_pred             EEEEEEEECCCHHHHHHHHCCCCCHHHCCHHCCHHEEEEEEECCCCCC-EEEE--EEECCCCCCEEEEEEEEEEECCCCE
T ss_conf             999999956899999997626762022112353014289997588998-7999--9986897643569999998277868


Q ss_pred             EEEECCCC-----CEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96312454-----10211379999987998189999999850887899999999999999999999999
Q gi|254780677|r   79 IAVKHIKN-----LFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEER  142 (152)
Q Consensus        79 i~~~~~~g-----~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~R  142 (152)
                      +.++.++|     +++.+.+.|+++|.++|+|+|.+..+|+............+.......++++++.-
T Consensus       107 ~~y~ii~g~~~~~~~~~~~~~~~v~p~gd~~t~v~w~~~f~~~~~~~~~~~~~~~~~~~~a~lk~le~~  175 (201)
T 2vq5_A          107 KKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAXADAISKL  175 (201)
T ss_dssp             EEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999156576554799999999988998318999999999998778857887656999999999999


No 16 
>>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* (A:)
Probab=99.31  E-value=1.3e-10  Score=87.92  Aligned_cols=140  Identities=16%  Similarity=0.233  Sum_probs=98.9

Q ss_pred             CC-CEEEEEEECCCHHHHHHHH-HHHH-HCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCE-EEEEEEEEEECCCCC
Q ss_conf             97-2489998359879999998-7574-231018752057999726888841999999962312-689998886157662
Q gi|254780677|r    1 MY-HFTADRIVNHSSQQMLSLV-SDIE-RYPEFVPLCKKVVIHERDNYGENEVLVASMTINYAC-MQREFMTQVRINQKE   76 (152)
Q Consensus         1 M~-~~~~~~~i~~~~e~i~~iV-~Dve-~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~-~~~~~~s~~~~~~~~   76 (152)
                      |+ +++.+..|++||+++|+++ .|.. .+|+|+|...++......+++.+......  ..-++ ..........+|..+
T Consensus         1 M~~~v~~~~~i~ap~e~vW~~~~~d~~~~~p~~~p~~~~~~~~~~~~g~~g~vR~~~--~~~g~~~~~~~Erl~~~D~~~   78 (155)
T 2flh_A            1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFN--FLPEVSPSYQREEITEFDESS   78 (155)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEE--ECTTSSSCEEEEEEEEEETTT
T ss_pred             CCEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCCEEEEEE--EEECCCCCEEEEEEEEECHHH
T ss_conf             916899999833899999999862420022343765221899946889855799999--870688715799999984347


Q ss_pred             EEEEEECCCC-----CEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0896312454-----10211379999987998189999999850887899999999999999999999999
Q gi|254780677|r   77 HYIAVKHIKN-----LFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEER  142 (152)
Q Consensus        77 ~~i~~~~~~g-----~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~R  142 (152)
                      +.+.+...+|     +++.+.+.|++.|.++|+|.|.++.+|+.................+..|+++.++-
T Consensus        79 r~~~y~~i~g~~~~~~~~~~~~~~~v~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  149 (155)
T 2flh_A           79 HEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERY  149 (155)
T ss_dssp             TEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             88999999167666343877899999617998509999999998999888810567778899999999999


No 17 
>>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI, protein structure initiative; 2.10A {Chromobacterium violaceum atcc 12472} (A:)
Probab=99.26  E-value=5.1e-10  Score=84.04  Aligned_cols=138  Identities=6%  Similarity=-0.095  Sum_probs=104.7

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEE
Q ss_conf             72489998359879999998757423101875205799972688884199999996231268999888615766208963
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAV   81 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~~   81 (152)
                      +.++.++.|++|+++||++++|.++|++|.|.+..+......+.+.+..+...+.....+....+..++....+.+.+.+
T Consensus         3 ~~i~~~~~I~ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~v~~~~p~~~l~~   82 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKXEFLAFASGQKHAFGGRYLELVPGERIRY   82 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHCEECCCCCCEEEEEEECCEECEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEE
T ss_conf             77999999789999999986397784004079982444666533664078999830799963358999997179989999


Q ss_pred             ECCCC--C-EEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12454--1-0211379999987998189999999850887899999999999999999999999997
Q gi|254780677|r   82 KHIKN--L-FNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHK  145 (152)
Q Consensus        82 ~~~~g--~-f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~  145 (152)
                      ....+  + .......|.|.+.+ ++|+|++..++-....+...     +......+++.++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~~~~-----~~~g~~~~l~~Lk~~~E~  143 (147)
T 1z94_A           83 TDRFDDAGLPGDXITTITLAPLS-CGADLSIVQEGIPDAIPPEN-----CYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEESCCC---CEEEEEEEEEET-TEEEEEEEEECCCTTSCHHH-----HHHHHHHHHHHHHHHHSC
T ss_pred             EEECCCCCCCCCEEEEEEEEECC-CCEEEEEEEECCCCHHHHHH-----HHHHHHHHHHHHHHHHCC
T ss_conf             98305888887679999999849-99899999965887778988-----999999999999999768


No 18 
>>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} (A:)
Probab=99.15  E-value=4.5e-09  Score=77.95  Aligned_cols=140  Identities=11%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             CEEEEEEECCCHHHHHH-HHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EECCCCCEEEE
Q ss_conf             24899983598799999-98757423101875205799972688884199999996231268999888-61576620896
Q gi|254780677|r    3 HFTADRIVNHSSQQMLS-LVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VRINQKEHYIA   80 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~-iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~~~~~~~~i~   80 (152)
                      .++.+..|++||+++|. ++.|+.+.|+|+|...++..+...+.+.+......+.-+..+..  ...+ ...|..++.+.
T Consensus         4 ~v~~~~~i~ap~e~vW~~l~~df~~~~~w~p~v~~~~~~~~g~g~~g~vr~~~~~~~~~~~~--~~ErL~~~D~~~~~~~   81 (155)
T 1icx_A            4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSF--VLHKLDAIDEANLTYN   81 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEE--EEEEEEEEEGGGTEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCHHHCHHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEE--EEEECCCCCCCCCEEE
T ss_conf             00255555336599998762271010442446530589985589986555899983485157--8863143231351567


Q ss_pred             EECCCCC-----EEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3124541-----021137999998799818999999985088789999999999999999999999999
Q gi|254780677|r   81 VKHIKNL-----FNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAH  144 (152)
Q Consensus        81 ~~~~~g~-----f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~  144 (152)
                      ++.++|+     ++...+.+++.+.++++|.|....+|+.............+......|++++++...
T Consensus        82 Y~i~~g~~~~~~~~~~~~~~~v~~~~~~~t~v~W~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  150 (155)
T 1icx_A           82 YSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVL  150 (155)
T ss_dssp             EEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHCHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHEEEE
T ss_conf             777536643567776020032023899983124889984266336687776663265105534102674


No 19 
>>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, protein structure initiative, midwest center for structural genomics; 2.30A {Staphylococcus aureus subsp} (A:)
Probab=99.12  E-value=1.7e-08  Score=74.22  Aligned_cols=116  Identities=5%  Similarity=-0.069  Sum_probs=76.9

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EECCCCCEE-E
Q ss_conf             72489998359879999998757423101875205799972688884199999996231268999888-615766208-9
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VRINQKEHY-I   79 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~~~~~~~~-i   79 (152)
                      ..++.++.|++||++||++++|.++|++|++.+.........+...+..+...+... .+....+..+ ..+++++++ +
T Consensus        14 ~~i~~~~~i~Ap~e~Vw~~ltd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~-~g~~~~~~~~v~~~~p~~~i~~   92 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWTKKDLLKQWFXTSARTNKEIEADVKEGGKYRIVDQQR-NGKVNVIEGIYESLVXDEYVKX   92 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECG-GGCEEEEEEEEEEEETTTEEEE
T ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECC-CCCCEEEEEEEEEECCCCEEEE
T ss_conf             689999997899999999974999847763589953144666144683357776057-7760368899999628978999


Q ss_pred             EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCH
Q ss_conf             631245410211379999987998189999999850887
Q gi|254780677|r   80 AVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNR  118 (152)
Q Consensus        80 ~~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~  118 (152)
                      .+...+++.......|+|+|.++|+|++++...+.....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~G~T~~~~~~~~~~~~~  131 (171)
T 2il5_A           93 TIGXPGLSETQDVIEVEFFERETGGTQXLFYYRSLVEKE  131 (171)
T ss_dssp             EESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCC
T ss_pred             EEECCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCHHH
T ss_conf             984368899974999999966999099999994258477


No 20 
>>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} (A:)
Probab=99.06  E-value=9.7e-09  Score=75.85  Aligned_cols=143  Identities=9%  Similarity=0.078  Sum_probs=104.6

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECC-CEE-EEEEEE--EEECCCCCE
Q ss_conf             7248999835987999999875742310187520579997268888419999999623-126-899988--861576620
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINY-ACM-QREFMT--QVRINQKEH   77 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~-~~~-~~~~~s--~~~~~~~~~   77 (152)
                      +.+..+.+|++||+++++++.|++.+++|-|.|.+++++++.+.+... +........ ... ...+..  ....+.+..
T Consensus        67 ~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~~l~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (224)
T 1jss_A           67 YLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCV-MRYTTAGQLLNIISPREFVDFSYTVGYEEGL  145 (224)
T ss_dssp             EEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCCCCEE-EEEEECCCCCCCCCCCEEEEEEEEEECCCCE
T ss_conf             699999999089999999986958788888888650686642899399-9999745588876765499999999759948


Q ss_pred             EEEEECCCC--------CEEEEEEEEEEEECCCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             896312454--------10211379999987998--189999999850887899999999999999999999999997
Q gi|254780677|r   78 YIAVKHIKN--------LFNFLENHWHFEEISES--KCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHK  145 (152)
Q Consensus        78 ~i~~~~~~g--------~f~~~~g~W~f~~~~~~--~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~  145 (152)
                      ++...+.+.        ..+.+.+.|.|+++++|  .|+|++....+++.++...+++.+......+++....+.+++
T Consensus       146 ~~~~~Sv~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~t~vt~~~~~D~~g~iP~~l~n~~~~~~~~~~~~~l~k~~~k  223 (224)
T 1jss_A          146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999984267899988589899633589998789998289999997178987759999999998799999999999732


No 21 
>>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} (A:)
Probab=99.02  E-value=4.6e-07  Score=65.12  Aligned_cols=114  Identities=10%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             CEEEEEEECCCHHHHHH-HHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCCCEEEE
Q ss_conf             24899983598799999-987574231018752057999726888841999999962312689998886-1576620896
Q gi|254780677|r    3 HFTADRIVNHSSQQMLS-LVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQKEHYIA   80 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~-iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~~~~i~   80 (152)
                      .++.+..|++||+++|+ ++.|+.+.|+|+|...++..+...+.+-+......+.-+..+  .....|. ..|..++.+.
T Consensus         4 kv~~~v~i~~~ae~vW~~l~~df~~l~~~~p~~~~~~~~~~g~g~~gsir~~~~~~~~~~--~~~kErl~~~D~~~~~~~   81 (157)
T 1tw0_A            4 VFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKT--SFVLQKVDAIDEANLGYD   81 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEETTEE--EEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCC--CEEEEEEEEECCCCCEEE
T ss_conf             888767616898998884430640176107002764068637999685999997368765--401899999846345899


Q ss_pred             EECCCCC-----EEEEEEEEEEEECCCCCEEEEEEEEEEECCH
Q ss_conf             3124541-----0211379999987998189999999850887
Q gi|254780677|r   81 VKHIKNL-----FNFLENHWHFEEISESKCKVHFSIKYELKNR  118 (152)
Q Consensus        81 ~~~~~g~-----f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~  118 (152)
                      +..++|+     ++...+.|.+.+.++++|.|..+.+|+....
T Consensus        82 y~i~eg~~~~~~~~~~~~~~~v~~~~~~~s~v~w~~~f~~~~~  124 (157)
T 1tw0_A           82 YSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGD  124 (157)
T ss_dssp             EEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTT
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC
T ss_conf             9998045465325899999999616999628999999998899


No 22 
>>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis subsp} (A:)
Probab=99.01  E-value=4.1e-10  Score=84.66  Aligned_cols=133  Identities=8%  Similarity=0.005  Sum_probs=94.0

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCCCEEE
Q ss_conf             9724899983598799999987574231018752057999726888841999999962312689998886-157662089
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQKEHYI   79 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~~~~i   79 (152)
                      |..++.+..|++||++||++++|.++|++|.|.|....    .. |  ..+  .+....+.    +..++ .++++ ..|
T Consensus         9 ~~~i~~~~~I~ap~~~Vw~~l~d~~~~~~W~~~~~~~~----~~-G--~~~--~~~~~~~~----~~~~v~e~~p~-~~i   74 (152)
T 2kew_A            9 LPDITKSITLEAPIQKVWETVSTSEGIAKWFMPNDFQL----KE-G--QEF--HLQSPFGP----SPCKVLAVQAP-TEL   74 (152)
T ss_dssp             SCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSCCCCS----CS-S--CCB--CSSSSCCS----CCBEEEEEETT-TEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHCCHHHHHHEECCCCCCC----EE-E--EEE--EEEECCCC----EEEEEEEEECC-CEE
T ss_conf             87099999981999999998728877614213467562----11-2--599--99841685----31899999689-599


Q ss_pred             EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             631245410211379999987998189999999850887--------899999999999999999999999997708999
Q gi|254780677|r   80 AVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNR--------LFDMMLKAIFDPSFLSFAKAFEERAHKIYHLPS  151 (152)
Q Consensus        80 ~~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~--------~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~~~  151 (152)
                      .+..   .+....+.|+|+|.+ ++|+|++..++.....        +.......+.+.....+++++++++++.-+.|+
T Consensus        75 ~~~~---~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~~e~~~~~~~  150 (152)
T 2kew_A           75 SFEW---DTEGWVVTFQLEDLG-EKTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEELEHHHH  150 (152)
T ss_dssp             EEEC---TTSCCEEEEEEECCS-SCEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCSCSSSS
T ss_pred             EEEE---CCCCEEEEEEEEECC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9997---799889999999859-979999999788886056665433346777656128589999999999962431124


No 23 
>>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR- 10 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A (A:)
Probab=98.99  E-value=3.1e-07  Score=66.27  Aligned_cols=139  Identities=13%  Similarity=0.015  Sum_probs=93.0

Q ss_pred             CCC--EEEEEEECCCHHHHHH-HHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EECCCCC
Q ss_conf             972--4899983598799999-98757423101875205799972688884199999996231268999888-6157662
Q gi|254780677|r    1 MYH--FTADRIVNHSSQQMLS-LVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VRINQKE   76 (152)
Q Consensus         1 M~~--~~~~~~i~~~~e~i~~-iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~~~~~~   76 (152)
                      |.+  ++.+..|++||+++|+ ++.|+...|+|+|...++..+...+++-+......+.-+  +.......+ ...|..+
T Consensus         1 M~~~k~~~~v~i~~pa~~vW~~~~~df~~l~~~~p~~~~~~~~~~~~g~~GsvR~~~~~~g--~~~~~~~Erl~~~D~~~   78 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEG--GESKYVLHKIEAIDEAN   78 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEET--TEEEEEEEEEEEEEGGG
T ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEECCC--CCCEEEEEEEEEEECCC
T ss_conf             9977998778604799999987620732136434424000058606899884999998489--97279999999870655


Q ss_pred             EEEEEECCCC-----CEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0896312454-----102113799999879981899999998508878-9999999999999999999999
Q gi|254780677|r   77 HYIAVKHIKN-----LFNFLENHWHFEEISESKCKVHFSIKYELKNRL-FDMMLKAIFDPSFLSFAKAFEE  141 (152)
Q Consensus        77 ~~i~~~~~~g-----~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~-~~~~~~~~~~~~~~~~i~aF~~  141 (152)
                      +.+.++.++|     +++.+.+.+.+.+.++++|.|....+|+..... ...-.-..+...+..|+++.++
T Consensus        79 ~~~~y~iieg~~~~~~~~~~~~~~~v~~~~~~~t~v~W~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~  149 (158)
T 2qim_A           79 LGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIES  149 (158)
T ss_dssp             TEEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             58999999355353637999999999717999648999999998899878878988889999889999999


No 24 
>>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus carota} PDB: 2wql_A* 2bk0_A (A:)
Probab=98.95  E-value=3.2e-07  Score=66.11  Aligned_cols=114  Identities=13%  Similarity=0.115  Sum_probs=84.0

Q ss_pred             CCC--EEEEEEECCCHHHHHHHH-HHHHH-CHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EECCCC
Q ss_conf             972--489998359879999998-75742-3101875205799972688884199999996231268999888-615766
Q gi|254780677|r    1 MYH--FTADRIVNHSSQQMLSLV-SDIER-YPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VRINQK   75 (152)
Q Consensus         1 M~~--~~~~~~i~~~~e~i~~iV-~Dve~-YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~~~~~   75 (152)
                      |.+  ++.+..|++||+++|+++ .|+.+ .|+|.|.+.++..++.++..+ ...  .+...-++.......+ ...|..
T Consensus         1 M~~~~~~~~~~i~apa~~vW~~~~~d~~~~~p~~~p~~~~~~~~~g~~~~G-svR--~~~~~~g~~~~~~~Erl~~~D~~   77 (154)
T 2vjg_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAG-TVR--IITLPEGSPITTMTVRTDAVNKE   77 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTT-CEE--EEECCTTCSCCEEEEEEEEEETT
T ss_pred             CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC-EEE--EEEECCCCCCEEEEEEEEEECCC
T ss_conf             996499999961589899999887342434742377541079998899998-499--99988998517899999999363


Q ss_pred             CEEEEEECCCC-----CEEEEEEEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             20896312454-----1021137999998799818999999985088
Q gi|254780677|r   76 EHYIAVKHIKN-----LFNFLENHWHFEEISESKCKVHFSIKYELKN  117 (152)
Q Consensus        76 ~~~i~~~~~~g-----~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~  117 (152)
                      ++.+.++.++|     +++.+.+.|++.|.++|+|.+.+..+|+...
T Consensus        78 ~~~~~y~iieg~~~~~~~~~~~~~~~v~~~~~~~s~v~w~~~~~~~~  124 (154)
T 2vjg_A           78 ALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKG  124 (154)
T ss_dssp             TTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEEST
T ss_pred             CCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf             35999999944445535699999999965799956999999999899


No 25 
>>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} (A:)
Probab=98.94  E-value=1.3e-08  Score=75.01  Aligned_cols=116  Identities=10%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHH-CHHHCCCCC-EEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EECCCCCE
Q ss_conf             97248999835987999999875742-310187520-5799972688884199999996231268999888-61576620
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIER-YPEFVPLCK-KVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VRINQKEH   77 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~-YpeFlP~c~-~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~~~~~~~   77 (152)
                      |.+++.+..|++||+++|++++|+++ +|+|+|.+. ++++.+-+..+-+......  +..++....+..+ ...|..++
T Consensus        16 ~~~v~~~~~i~apae~vW~~~~d~~~l~~~~~p~~~~s~~~~~g~~~~vGtvR~~~--~~~~~~~~~~~Erl~~~D~~~~   93 (166)
T 2i9y_A           16 VGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWN--YVHDGEAKVAKERIEAVEPDKN   93 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEE--EEETTEEEEEEEEEEEEETTTT
T ss_pred             CEEEEEEEEECCCHHHHHHHHHCCHHHCCHHCHHHCCEEEEECCCCCCCCCEEEEE--EECCCCCEEEEEEEEEECCHHC
T ss_conf             55999999945899999999827321202217314537999858887899789999--8159981489999999952357


Q ss_pred             EEEEECCCC----CEEEEEEEEEEEEC-CCCCEEEEEEEEEEECCH
Q ss_conf             896312454----10211379999987-998189999999850887
Q gi|254780677|r   78 YIAVKHIKN----LFNFLENHWHFEEI-SESKCKVHFSIKYELKNR  118 (152)
Q Consensus        78 ~i~~~~~~g----~f~~~~g~W~f~~~-~~~~t~V~~~l~fe~~~~  118 (152)
                      .+.++.++|    +++.+.+.++|.|. ++++|.|.++.+|+....
T Consensus        94 ~~~y~i~eg~~~~~~~~~~~t~~v~~~~~~~~t~v~wt~~y~~~~~  139 (166)
T 2i9y_A           94 LITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISE  139 (166)
T ss_dssp             EEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESST
T ss_pred             EEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf             8999998365777603799999996158999649999999981899


No 26 
>>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} (A:)
Probab=98.84  E-value=1.7e-08  Score=74.26  Aligned_cols=128  Identities=8%  Similarity=0.039  Sum_probs=88.9

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |..++.++.|++||++||++++|.+++++|+|.|...    -.   .+..+..  ....+....+++   .++++ +.+.
T Consensus         7 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~~~----~~---~G~~~~~--~~~~~~~~~~v~---~~~p~-~~l~   73 (143)
T 1xn6_A            7 LNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPNDFV----LE---VGHEFHV--QSPFGPSPCKVL---EIDEP-NHLS   73 (143)
T ss_dssp             CCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBCCC----CC---TTCEECB--CCTTCCCCEEEE---EEETT-TEEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHCCHHHHCEEEECCCCC----CC---CCEEEEE--EECCCCEEEEEE---EEECC-CEEE
T ss_conf             9869999998999999999872966613474346775----12---2258999--510451008999---98079-6899


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             312454102113799999879981899999998508878--------9999999999999999999999999
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL--------FDMMLKAIFDPSFLSFAKAFEERAH  144 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~--------~~~~~~~~~~~~~~~~i~aF~~Ra~  144 (152)
                      +..   .+....+.|+|+|.++|+|+|++...+......        -..............+++.+++.|+
T Consensus        74 ~~~---~~~~~~~~~~l~~~~~g~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~Lk~~~E  142 (143)
T 1xn6_A           74 FSW---DTDGWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EEE---TTTTEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             EEE---CCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHC
T ss_conf             998---699958999999668994999999837787426665402014678888753879999999999838


No 27 
>>1fm4_A Major pollen allergen BET V 1-L; alpha-beta: 6 anti-parallel beta strands and 3 alpha helices.; HET: DXC; 1.97A {Betula pendula} (A:)
Probab=98.79  E-value=1.1e-06  Score=62.75  Aligned_cols=112  Identities=13%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHC-HHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCE--EEEEEEEEEECCCCCEE
Q ss_conf             2489998359879999998-757423-1018752057999726888841999999962312--68999888615766208
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLV-SDIERY-PEFVPLCKKVVIHERDNYGENEVLVASMTINYAC--MQREFMTQVRINQKEHY   78 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV-~Dve~Y-peFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~--~~~~~~s~~~~~~~~~~   78 (152)
                      +++.+..|++||+++|+++ .|..+. |+|.|...++......+++-+......+..+..+  .+++..   ..|..++.
T Consensus         4 ~v~~~~~i~apae~vW~~l~~~~~~~~~~~~p~~~~~~~~~~~~g~~G~vR~~~~~~~~~g~~~~Erl~---~~D~~~~~   80 (159)
T 1fm4_A            4 NYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVD---EVDHTNFK   80 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEE---EEETTTTE
T ss_pred             CCCCCCEECCHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHCCC---CCCCCCCE
T ss_conf             333320011407887788721465235543645520334033679986055513888887146530222---01345513


Q ss_pred             EEEECCCC-----CEEEEEEEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             96312454-----1021137999998799818999999985088
Q gi|254780677|r   79 IAVKHIKN-----LFNFLENHWHFEEISESKCKVHFSIKYELKN  117 (152)
Q Consensus        79 i~~~~~~g-----~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~  117 (152)
                      +.++.++|     +|+.+.+.+++.+.++++|.|..+.+|+...
T Consensus        81 ~~y~i~~g~~~~~~~~~~~~t~~v~~~~~~~t~v~w~~~f~~~~  124 (159)
T 1fm4_A           81 YNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKG  124 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEEST
T ss_pred             EEEEEECCCCCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCCC
T ss_conf             22467617863206887233127997589955899544022577


No 28 
>>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, alpha-beta protein, PSI; 1.70A {Nitrosomonas europaea atcc 19718} (A:)
Probab=98.78  E-value=1.6e-06  Score=61.73  Aligned_cols=146  Identities=6%  Similarity=-0.091  Sum_probs=91.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             24899983598799999987574231018752057999726888841999999962312689998886157662089631
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAVK   82 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~~~   82 (152)
                      .++.++.|++||++||++++|.+++++|.+.+.........+-..+..+....... .+........+.--.+++.|.+.
T Consensus        11 ~i~~~~~i~Ap~~~Vw~~~td~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~-~~~~~~~~~~v~e~~p~~~i~~~   89 (178)
T 1xfs_A           11 DLXLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVXQDP-EGNKFPNSGCFLEVTDEKRLIWT   89 (178)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECT-TCCEEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCCCCEEEECCEECCCEEEEEEECC-CCCEEEEEEEEEECCCCEEEEEE
T ss_conf             89999996799999999975988972556689951256321102496389977479-99776778999981686699999


Q ss_pred             CC----------------CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24----------------54102113799999879981899999998508878999999999999999999999999977
Q gi|254780677|r   83 HI----------------KNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKI  146 (152)
Q Consensus        83 ~~----------------~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~  146 (152)
                      ..                .+.-....-.|.|++.+ ++|+|++...+....... ......+......+++.+++.++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~l~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~Lk~~lE~~  167 (178)
T 1xfs_A           90 SALVKNYRPAVPATTSDKECAHIVXTAVIELQPTS-SGTRYTACAXHNTPGQRK-LHEEXGFHEGWGTTITQLEELLKQE  167 (178)
T ss_dssp             SSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECSSHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC-CCEEEEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             84056657565555556677887579999999739-938999999747831488-9998779989999999999999738


Q ss_pred             CCCCC
Q ss_conf             08999
Q gi|254780677|r  147 YHLPS  151 (152)
Q Consensus       147 yg~~~  151 (152)
                      -+.|.
T Consensus       168 ~~~~~  172 (178)
T 1xfs_A          168 KAYLE  172 (178)
T ss_dssp             SCC--
T ss_pred             CCCCC
T ss_conf             55333


No 29 
>>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} (A:)
Probab=98.69  E-value=7.8e-07  Score=63.67  Aligned_cols=141  Identities=8%  Similarity=0.016  Sum_probs=87.4

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECC--CCCCCEEEEEEEEECCCEEEEEEEEEEE-CCCCCEE
Q ss_conf             724899983598799999987574231018752057999726--8888419999999623126899988861-5766208
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERD--NYGENEVLVASMTINYACMQREFMTQVR-INQKEHY   78 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~--~~~~~~~~~a~l~v~~~~~~~~~~s~~~-~~~~~~~   78 (152)
                      +.++.++.|++|+++||++++|.++|++|+|.+..+......  +...+..+.... .+..+.......++. .+++. .
T Consensus         2 t~i~~~~~I~ap~e~Vw~~ltd~~~~~~W~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~g~~~~~~~~v~~~~p~~-~   79 (152)
T 3eli_A            2 ADLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVX-VNGEGQRYKVSGQVTHVKPPQ-S   79 (152)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEE-ECTTCCEEEEEEEEEEEETTT-E
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEE-ECCCCCEEEEEEEEEEECCCC-E
T ss_conf             63999999759999999987698899346488996315045798331185189999-899997888999999956998-8


Q ss_pred             EEEEC-----CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             96312-----4541021137999998799818999999985088789999999999999999999999999770899
Q gi|254780677|r   79 IAVKH-----IKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYHLP  150 (152)
Q Consensus        79 i~~~~-----~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~~  150 (152)
                      +.+..     ..++.......|.|++.+ ++|+|++....-...... ..    +......+++.+++.++..-..|
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~l~~~~~~~~~~~~~-~~----~~~g~~~~l~~Lk~~le~~~~~p  150 (152)
T 3eli_A           80 VGFTWGWHDDDDRRGAESHVXFIVEPCA-KGARLILDHRELGDDEXS-LR----HEEGWTSSLRKLAAELALEHHHH  150 (152)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEESCSCHHHH-HH----HHHHHHHHHHHHHHHHHTTC---
T ss_pred             EEEEEEECCCCCCCCCCEEEEEEEEECC-CEEEEEEEEECCCCHHHH-HH----HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999862678888886279999999869-907999999348998999-88----99999999999999967562325


No 30 
>>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} (A:)
Probab=98.67  E-value=7.2e-07  Score=63.91  Aligned_cols=145  Identities=14%  Similarity=0.136  Sum_probs=96.3

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEE-EEEEEE-EEE-CCCC--C
Q ss_conf             7248999835987999999875742310187520579997268888419999999623126-899988-861-5766--2
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM-QREFMT-QVR-INQK--E   76 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~-~~~~~s-~~~-~~~~--~   76 (152)
                      ..+....+|++|++++++++.|.+.+++|-|.|.+++++++.+.. ...+...+.....+. ...|+. +.. ...+  .
T Consensus        88 ~~~k~~~~v~~~~~~v~~~~~d~~~~~~wd~~~~~~~~i~~~~~~-~~i~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~~  166 (258)
T 3fo5_A           88 LSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDNGD  166 (258)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSSTTC
T ss_pred             EEEEEEEEECCCHHHHHHHHHCHHHHHHCCCCCCEEEEEEEECCC-CEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf             799999997799999998770987731002355259999992899-4699998158887677745999999998858998


Q ss_pred             -EEEEEECCC--------CCEE--EEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             -089631245--------4102--11379999987998189999999850887899999999-99999999999999999
Q gi|254780677|r   77 -HYIAVKHIK--------NLFN--FLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAI-FDPSFLSFAKAFEERAH  144 (152)
Q Consensus        77 -~~i~~~~~~--------g~f~--~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~-~~~~~~~~i~aF~~Ra~  144 (152)
                       .++...+.+        |..+  .+.|.|.|+|+++|.|+|++....+.++. ...+++.+ .+..+.++.++.++.++
T Consensus       167 ~~v~~~~sv~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~vt~~~~~D~G~i-P~~lvn~~~~~~~~~~~~~~l~~~~~  245 (258)
T 3fo5_A          167 PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGVL-NYVTTNVAGLSSEFYTTFKACEQFLL  245 (258)
T ss_dssp             CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGGH-HHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEEEEECCCCCCC-CCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             89999860437889999980875872457999989999669999980599876-41147600347899999999999974


Q ss_pred             HHCC
Q ss_conf             7708
Q gi|254780677|r  145 KIYH  148 (152)
Q Consensus       145 ~~yg  148 (152)
                      +.-.
T Consensus       246 ~~~~  249 (258)
T 3fo5_A          246 DNRN  249 (258)
T ss_dssp             HTC-
T ss_pred             HCCC
T ss_conf             4677


No 31 
>>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural genomics, structural genomics consortium, SGC; 2.50A {Homo sapiens} (A:)
Probab=98.67  E-value=3.7e-06  Score=59.36  Aligned_cols=145  Identities=11%  Similarity=0.047  Sum_probs=100.8

Q ss_pred             CCEEEEEEECCCHHHHHHHHHH--HHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEEC-CCEEEEEEE--EEE-ECCCC
Q ss_conf             7248999835987999999875--74231018752057999726888841999999962-312689998--886-15766
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSD--IERYPEFVPLCKKVVIHERDNYGENEVLVASMTIN-YACMQREFM--TQV-RINQK   75 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~D--ve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~-~~~~~~~~~--s~~-~~~~~   75 (152)
                      ..+..+..|+++++++++++.|  .+..++|-|.|.+++++++.+.+............ .......|+  ... ..+..
T Consensus        67 ~~~k~~~~i~~~~~~v~~~l~~~~~~~~~~wd~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~  146 (231)
T 2r55_A           67 NLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDG  146 (231)
T ss_dssp             EEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTS
T ss_pred             EEEEEEEEECCCHHHHHHHHHHCCHHHHHHHCHHCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf             79999999908999999998712046787644102059999972999099999975567787899849999999994898


Q ss_pred             CEEEEEECCCCC----------EEEEEEEEEEEECCCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             208963124541----------0211379999987998--1899999998508878999999999999999999999999
Q gi|254780677|r   76 EHYIAVKHIKNL----------FNFLENHWHFEEISES--KCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERA  143 (152)
Q Consensus        76 ~~~i~~~~~~g~----------f~~~~g~W~f~~~~~~--~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra  143 (152)
                      ..++...+.+.+          ...+.+.|.+++.++|  .|+|++....+++..+...+++.+++..+..++..+.+.+
T Consensus       147 ~~~~~~~s~~~~~~p~~~~~vR~~~~~~g~~i~~~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~~l~~~~  226 (231)
T 2r55_A          147 TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQKAV  226 (231)
T ss_dssp             CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998404346756763998985168999998899985999999980789867099999999986999999999999


Q ss_pred             HHH
Q ss_conf             977
Q gi|254780677|r  144 HKI  146 (152)
Q Consensus       144 ~~~  146 (152)
                      ++.
T Consensus       227 ~~~  229 (231)
T 2r55_A          227 KQF  229 (231)
T ss_dssp             HGG
T ss_pred             HHH
T ss_conf             974


No 32 
>>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, bacillus halodurans protein BH1534; NMR {Bacillus halodurans c-125} (A:)
Probab=98.66  E-value=1.6e-07  Score=68.07  Aligned_cols=102  Identities=6%  Similarity=-0.029  Sum_probs=69.5

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |+.++.++.|++||++||+.++|.+.+++|.|.+.-      ++ +.+..+.  +.-.-+....+++   .+++ .+.+.
T Consensus         4 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~~------~~-~~g~~~~--~~~~~~~~~~~v~---e~~p-~~~i~   70 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDL------KA-ETGHHFH--LQSPFGPSPCQVT---DVER-PIKLS   70 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBCC------CS-CTTCEEE--EECSSCEEEEEEE---EEET-TTEEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCC------CC-CCCEEEE--EECCCCCCCEEEE---EEEC-CCEEE
T ss_conf             974999999779999999998196677653424665------44-4652898--6436665567999---9826-93899


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH
Q ss_conf             312454102113799999879981899999998508878
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL  119 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~  119 (152)
                      +...   +......|+|+|.+ ++|+|++...+......
T Consensus        71 ~~~~---~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~  105 (146)
T 1xn5_A           71 FTWD---TDGWSVTFHLKEEE-NGTIFTIVHSGWKQGDT  105 (146)
T ss_dssp             EEET---TTTEEEEEEEEECS-SSEEEEEEEECCCSTTC
T ss_pred             EEEC---CCCCEEEEEEEECC-CCEEEEEEEECCCCCCH
T ss_conf             9985---89948999999849-97899999936776413


No 33 
>>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} (A:)
Probab=98.66  E-value=4.6e-06  Score=58.74  Aligned_cols=142  Identities=9%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             CCEEEEEEEC-CCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-E---ECCCCC
Q ss_conf             7248999835-9879999998757423101875205799972688884199999996231268999888-6---157662
Q gi|254780677|r    2 YHFTADRIVN-HSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-V---RINQKE   76 (152)
Q Consensus         2 ~~~~~~~~i~-~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~---~~~~~~   76 (152)
                      +.+.....++ .+++.+++++.|.+.+++|.|.|...+++....   .......+......-...|+.. .   ..+...
T Consensus        52 ~~~k~~~~i~~~~~~~~~~~~~d~~~~~~wd~~~~~~~~~~~~~---~~i~~~~~~~~~~v~~RD~v~~~~~~~~~~~~~  128 (214)
T 1ln1_A           52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG---ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGR  128 (214)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT---EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTC
T ss_pred             EEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHEEEECCCC---CEEEEEEECCCCCCCCEEEEEEEEEEECCCCCC
T ss_conf             89999999938999999999848567888988765138985799---589999931677677606999999998267777


Q ss_pred             E--EEEEECC--------CCCE--EEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0--8963124--------5410--21137999998799818999999985088789999999999999999999999999
Q gi|254780677|r   77 H--YIAVKHI--------KNLF--NFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAH  144 (152)
Q Consensus        77 ~--~i~~~~~--------~g~f--~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~  144 (152)
                      .  .+...+.        .|..  ..+.+.|.++|.++|+|+|++....+++..+...+++....+.+..++..+.+.++
T Consensus       129 ~~~~~~~~s~~~p~~p~~~~~vR~~~~~~~~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~n~~~~~~~~~~l~~l~~~~~  208 (214)
T 1ln1_A          129 KIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQ  208 (214)
T ss_dssp             CEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCCCCCEECCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16999973255777887899660753546799997799969999999759898576999999999879999999999997


Q ss_pred             HH
Q ss_conf             77
Q gi|254780677|r  145 KI  146 (152)
Q Consensus       145 ~~  146 (152)
                      +.
T Consensus       209 ~~  210 (214)
T 1ln1_A          209 NY  210 (214)
T ss_dssp             TC
T ss_pred             HC
T ss_conf             10


No 34 
>>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} (A:)
Probab=98.63  E-value=7.1e-06  Score=57.55  Aligned_cols=139  Identities=9%  Similarity=0.060  Sum_probs=89.6

Q ss_pred             CEEEEEEECCCHHHHHHH-HHHHHHC-HHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEE-CCCCCEEE
Q ss_conf             248999835987999999-8757423-10187520579997268888419999999623126899988861-57662089
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSL-VSDIERY-PEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVR-INQKEHYI   79 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~i-V~Dve~Y-peFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~-~~~~~~~i   79 (152)
                      .++.+..|++||+++|++ +.|+.+. |.+.|....+.-+...+++-+....  +...-++.......|.. .|...+.+
T Consensus         4 k~~~~v~i~a~a~~vW~~~~~d~~~~~~~~~p~~~~~~e~~~~dg~~GsvR~--~~~~~g~~~~~~~Erl~~~D~~~r~~   81 (159)
T 1e09_A            4 TYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKK--ITFGEGSQYGYVKHKIDSIDKENYSY   81 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEE--EEECCSSSCEEEEEEEEEEETTTTEE
T ss_pred             EEEEEEEECCCHHHHHHHHHHCCCCCCCHHCCHHEEEEEEECCCCCCCCEEE--EEECCCCCCEEEEEEEEEECCCCCEE
T ss_conf             9988776057989999988636010172025013038989878899982999--99878997538999999981543689


Q ss_pred             EEECCCCC-----EEEEEEEEEEEECCCCCEEEEEEEEEEECCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63124541-----021137999998799818999999985088789-99999999999999999999999
Q gi|254780677|r   80 AVKHIKNL-----FNFLENHWHFEEISESKCKVHFSIKYELKNRLF-DMMLKAIFDPSFLSFAKAFEERA  143 (152)
Q Consensus        80 ~~~~~~g~-----f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~-~~~~~~~~~~~~~~~i~aF~~Ra  143 (152)
                      .+..++|+     ++.+.+..++.+.++++|.|..+.+|+..++-. ..-.-..+...+..|++++++..
T Consensus        82 ~y~iieG~~~~~~~~~~~~~~~v~~~~~~~s~v~Wt~~f~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l  151 (159)
T 1e09_A           82 SYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYL  151 (159)
T ss_dssp             EEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999955435473689999999997699978999999999899977886687878999999999999998


No 35 
>>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} (A:)
Probab=98.61  E-value=1.5e-05  Score=55.47  Aligned_cols=115  Identities=11%  Similarity=0.082  Sum_probs=80.7

Q ss_pred             CC--CEEEEEEECCCHHHHHHH-HHHHHHC-HHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCC
Q ss_conf             97--248999835987999999-8757423-1018752057999726888841999999962312689998886-15766
Q gi|254780677|r    1 MY--HFTADRIVNHSSQQMLSL-VSDIERY-PEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQK   75 (152)
Q Consensus         1 M~--~~~~~~~i~~~~e~i~~i-V~Dve~Y-peFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~   75 (152)
                      |+  +++.+..|++||+++|+. +.|+.+. |+|+|...++..+...+++-+....  +...-++...+...+. ..|..
T Consensus         7 Ma~~~~~~~v~i~a~a~~vW~~l~~df~~l~p~~~P~~~~~~~~~~g~g~~GsvR~--~~~~~g~~~~~~~Erl~~~D~~   84 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTK--ITFVDGHPLTYMLHKFDEIDAA   84 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEE--EEECTTSSCCEEEEEEEEEEGG
T ss_pred             EEEEEEEEEEEECCCHHHHHHHHHHCCCHHCHHHCCHHCEEEEEECCCCCCCEEEE--EEECCCCCCCEEEEEEEEEECC
T ss_conf             74279855588326989999878614201040247412158999867899781999--9983798641668999998042


Q ss_pred             CEEEEEECCCCC-----EEEEEEEEEEEECCCCCEEEEEEEEEEECCH
Q ss_conf             208963124541-----0211379999987998189999999850887
Q gi|254780677|r   76 EHYIAVKHIKNL-----FNFLENHWHFEEISESKCKVHFSIKYELKNR  118 (152)
Q Consensus        76 ~~~i~~~~~~g~-----f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~  118 (152)
                      ++.+.++..+|+     +....+.+.+.+.+ ++|.|....+|+....
T Consensus        85 ~~~~~Y~ileg~~~~~~~~~~~~~~~v~~~~-~gs~v~W~~~f~~~~~  131 (165)
T 3ie5_A           85 NFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVTYHPKPG  131 (165)
T ss_dssp             GTEEEEEEEEEGGGTTTEEEEEEEEEEEEET-TEEEEEEEEEEEECTT
T ss_pred             CCEEEEEEEECCCCCCCEEEEEEEEEEECCC-CCEEEEEEEEEEECCC
T ss_conf             2689999991220546189999999994599-9669999999998899


No 36 
>>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 2z9z_A* (A:)
Probab=98.50  E-value=2.5e-05  Score=54.09  Aligned_cols=148  Identities=10%  Similarity=0.091  Sum_probs=101.0

Q ss_pred             CCCEEEEEEEC-CCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE-EE-CC----
Q ss_conf             97248999835-9879999998757423101875205799972688884199999996231268999888-61-57----
Q gi|254780677|r    1 MYHFTADRIVN-HSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ-VR-IN----   73 (152)
Q Consensus         1 M~~~~~~~~i~-~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~-~~-~~----   73 (152)
                      ++.+..+.+++ .|++++++++.|.+..++|-|.|.++++++..+.. ...+.......+..-...|+.. .. .+    
T Consensus        72 ~~~~k~~~~~~~~~~~~~~~~~~d~~~~~~wd~~~~~~~~l~~~~~~-~~i~y~~~k~~~~v~~RDfv~~~~~~~~~~~~  150 (255)
T 2e3n_A           72 LDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADN-AIIIYQTHKRVWPASQRDVLYLSVIRKIPALT  150 (255)
T ss_dssp             CCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEETT-EEEEEEEECCCTTSCCEEEEEEEEEEEECCSS
T ss_pred             EEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCCC-CCEEEEEEECCCCCCCCEEEEEEEEEECCCCC
T ss_conf             48999999987899999999984877788899888647999860899-63899995337898865258899999626653


Q ss_pred             --CCC-EEEEEECCC--------CCE--EEEEEEEEEEECCC-----------CCEEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf             --662-089631245--------410--21137999998799-----------818999999985088789999999999
Q gi|254780677|r   74 --QKE-HYIAVKHIK--------NLF--NFLENHWHFEEISE-----------SKCKVHFSIKYELKNRLFDMMLKAIFD  129 (152)
Q Consensus        74 --~~~-~~i~~~~~~--------g~f--~~~~g~W~f~~~~~-----------~~t~V~~~l~fe~~~~~~~~~~~~~~~  129 (152)
                        ..+ .++...+.+        +..  .-..+.|.|+++.+           ++|+|++....+++..+...+++.+..
T Consensus       151 ~~~~~~~i~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~vt~~~~~D~~G~iP~~l~n~~~~  230 (255)
T 2e3n_A          151 ENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAK  230 (255)
T ss_dssp             TTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred             CCCCCEEEEEEEEECHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             25898899999720413236689938907762159999951578754455789868999999857897255999999998


Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999977089
Q gi|254780677|r  130 PSFLSFAKAFEERAHKIYHL  149 (152)
Q Consensus       130 ~~~~~~i~aF~~Ra~~~yg~  149 (152)
                      ..+..++..+.+.+++.-+.
T Consensus       231 ~~~~~~i~~l~~~~~~~~~~  250 (255)
T 2e3n_A          231 REYPKFLKRFTSYVQEKTAG  250 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             77799999999999833799


No 37 
>>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} (A:)
Probab=98.49  E-value=2e-05  Score=54.70  Aligned_cols=144  Identities=9%  Similarity=0.053  Sum_probs=101.4

Q ss_pred             CCEEEEEEECCCHHHHH-HHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECC----CEEEEEEEEEEECCCCC
Q ss_conf             72489998359879999-99875742310187520579997268888419999999623----12689998886157662
Q gi|254780677|r    2 YHFTADRIVNHSSQQML-SLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINY----ACMQREFMTQVRINQKE   76 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~-~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~----~~~~~~~~s~~~~~~~~   76 (152)
                      +-+..+..|++++++++ +++.|++.+++|-|.+.+++++++...+.. ..........    .+-..-+......+++.
T Consensus        66 ~~~k~~~~i~~~~~~~~~~~~~d~~~~~~wd~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~v~~RDfv~~~~~~~~~~~  144 (229)
T 1em2_A           66 KTFILKTFLPCPAELVYQEVILQPERXVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  144 (229)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHHEEEEEEECCCCCE-EEEEEECCCCCCCCCCCEEEEEEEEEECCCE
T ss_conf             799999999289999999998696889888744440999998189927-9999974658986778789999999986983


Q ss_pred             EEEEEECCCCC----------EEEEEEEEEEEECCC--CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             08963124541----------021137999998799--818999999985088789999999999999999999999999
Q gi|254780677|r   77 HYIAVKHIKNL----------FNFLENHWHFEEISE--SKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAH  144 (152)
Q Consensus        77 ~~i~~~~~~g~----------f~~~~g~W~f~~~~~--~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~  144 (152)
                      .++...+.+.+          ...+.+.|.+++.++  +.|+|++....+++..+...+++.+....+-.++..+.+.++
T Consensus       145 ~~~~~~Sv~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~~~vt~~~~~D~~G~iP~~l~n~~~~~~~~~~i~~l~~~~~  224 (229)
T 1em2_A          145 YLSSGIATSHSAKPPTHKYVRGENGPGGXIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATXFEFAFHLRQRIS  224 (229)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999851367678889838989965789999889999808999999817898777999999998869999999999999


Q ss_pred             HH
Q ss_conf             77
Q gi|254780677|r  145 KI  146 (152)
Q Consensus       145 ~~  146 (152)
                      +.
T Consensus       225 ~~  226 (229)
T 1em2_A          225 EL  226 (229)
T ss_dssp             HT
T ss_pred             HH
T ss_conf             97


No 38 
>>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, structural genomics, structural genomics consortium; 2.80A {Homo sapiens} (A:51-237)
Probab=98.43  E-value=1.3e-05  Score=55.83  Aligned_cols=134  Identities=11%  Similarity=0.052  Sum_probs=91.0

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEE--EECCCCC-EE
Q ss_conf             72489998359879999998757423101875205799972688884199999996231268999888--6157662-08
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQ--VRINQKE-HY   78 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~--~~~~~~~-~~   78 (152)
                      +-+..+..|+++++++++.+  ++.+++|.|.|.+++++++.+.+ ...........+..-...|+..  ...++.. .+
T Consensus        25 ~~~k~~~~i~~~~~~~~~~~--~~~~~~w~~~~~~~~vl~~~~~~-~~i~~~~~~~~~~~~~RDfv~~~~~~~~~~~~~~  101 (187)
T 2pso_A           25 KLWKASVEVEAPPSVVLNRV--LRERHLWDEDFVQWKVVETLDRQ-TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMC  101 (187)
T ss_dssp             CEEEEEEEESSCHHHHHHHH--HHCGGGTCTTBCCCEEEEEEETT-EEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCE
T ss_pred             EEEEEEEEEECCHHHHHHHH--HHHHHHHHHHHHEEEEEEEECCC-CEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEE
T ss_conf             59999999958999999999--98798787653159999995899-7999998726887676256999999996799869


Q ss_pred             EEEECCCCCE----------EEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9631245410----------21137999998799818999999985088789999999999999999999
Q gi|254780677|r   79 IAVKHIKNLF----------NFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKA  138 (152)
Q Consensus        79 i~~~~~~g~f----------~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~a  138 (152)
                      +.......+.          ..+.+.|.|+|++++.|+|++....+++..+...+++.+.+..+..+.+.
T Consensus       102 ~~~~~~~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~t~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~l  171 (187)
T 2pso_A          102 TLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVARI  171 (187)
T ss_dssp             EEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCTTTTTTHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999735688899999399999625499999899978999999866898676789876778899999999


No 39 
>>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, protein structure initiative; HET: MSE; 1.45A {Enterococcus faecalis V583} (A:)
Probab=98.39  E-value=7.4e-06  Score=57.43  Aligned_cols=128  Identities=9%  Similarity=0.024  Sum_probs=81.2

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE
Q ss_conf             97248999835987999999875742310187520579997268888419999999623126899988861576620896
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA   80 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~   80 (152)
                      |..++.++.|++||++||++++|.+++++|.|....++.  +  .|  ..+  .+....+..    ..++....+++.+.
T Consensus        35 ~~~i~~e~~I~Ap~e~Vw~~ltdpe~~~~W~~~~~~~~~--~--~G--g~~--~~~~~~~~~----~~~v~e~~p~~~l~  102 (184)
T 2nn5_A           35 TIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGEL--G--VN--GFW--RFILPDFEE----TXPFTDYAEEKYLG  102 (184)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEEC--S--TT--CEE--EEEETTEEE----EEEEEEEETTTEEE
T ss_pred             CEEEEEEEECCCCHHHHHHHHCCHHHHHHHCCCCCCCCC--C--CC--CEE--EEEECCCCC----CEEEEEEECCCEEE
T ss_conf             269999994389999999987296788862798774455--6--78--779--996258988----66899996793799


Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             312454102113799999879981899999998508878999999999999999999999999977089
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIYHL  149 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg~  149 (152)
                      +...     .....|.|.+..+|+|++++...+.....-.....    ......+++.+++.++..=+.
T Consensus       103 ~~~~-----~~~~~~~~~~~~~g~T~l~~~~~~~~~~~~~~~~~----~~gw~~~l~~Lk~~le~~~~~  162 (184)
T 2nn5_A          103 VTWD-----TGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKD----IAGWSIVLNRLKQVVETPDAA  162 (184)
T ss_dssp             EEET-----TEEEEEEEEEEETTEEEEEEEEEECTTCSSCHHHH----HHHHHHHHHHHHHHHHCTTCC
T ss_pred             EEEC-----CCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCC----CCCHHHHHHHHHHHHCCCCCC
T ss_conf             9946-----97799999855899399999973476554446333----488999999999997799999


No 40 
>>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} (A:)
Probab=98.32  E-value=6.3e-06  Score=57.88  Aligned_cols=116  Identities=6%  Similarity=-0.035  Sum_probs=73.2

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEE-------EEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCC
Q ss_conf             724899983598799999987574231018752057-------9997268888419999999623126899988861576
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKV-------VIHERDNYGENEVLVASMTINYACMQREFMTQVRINQ   74 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~-------~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~   74 (152)
                      ..++.++.|++||++||++++|-+++++|++.|...       .....+..+.+...  .......+....+..++.--.
T Consensus        19 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~~~~~~~~~~~v~~~~   96 (191)
T 2k5g_A           19 QSIRFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFNHAALTAETA--PARYAQYDRPIVARHTLLRCE   96 (191)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCCCCSSTTCEEEEEECGGGSCCSSC--CSSCSGGGSCEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC--CCCCCCCCCCEEEEEEEEEEE
T ss_conf             769999995899999999985948785415688865616868999971688642222--221257886036899999987


Q ss_pred             CCEEEEEE-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHH
Q ss_conf             62089631-24541021137999998799818999999985088789
Q gi|254780677|r   75 KEHYIAVK-HIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF  120 (152)
Q Consensus        75 ~~~~i~~~-~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~  120 (152)
                      +.+.+.+. ...++.......|+|.+.+ ++|+|++...........
T Consensus        97 p~~~l~~~~~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~  142 (191)
T 2k5g_A           97 PPRVLALTWGGGAGEAPSEVLFELSEAG-EQVRLVLTHTRLADRAAM  142 (191)
T ss_dssp             TTTEEEEECCCCSSSSCCEEEEEEEECS-SSEEEEEEEECCCSHHHH
T ss_pred             CCEEEEEEEECCCCCCCEEEEEEEEECC-CCEEEEEEEECCCCHHHH
T ss_conf             6808999850688988648999998659-949999999578985666


No 41 
>>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} (A:)
Probab=97.93  E-value=0.00014  Score=49.25  Aligned_cols=139  Identities=6%  Similarity=-0.103  Sum_probs=79.3

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHH----HCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCE
Q ss_conf             7248999835987999999875742310----187520579997268888419999999623126899988861576620
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPE----FVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEH   77 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~Ype----FlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~   77 (152)
                      +.++.++.|++||++||++++|-.+...    +-.++.......+    .+..+  .+....+......+ -..++++..
T Consensus         4 ~~i~~~~~i~Ap~~~Vw~~~td~~~~w~~~~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~-v~~~~p~~~   76 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDK----KGGRW--YEIDEQGEEHTFGL-IRKVDEPDT   76 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHHTTCSSSSSSGGGSTTTTCSSCEEET----TTTEE--ECCCTTTSCCCCEE-EEEEETTTE
T ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC----CCCEE--EEECCCCEEEEEEE-EEEEECCCE
T ss_conf             859999999699999999987547866599986640034776217----87249--99813420365379-999956848


Q ss_pred             EEEEEC--CCCC----EEEEEEEEEEEECCCCCEEEEEEEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             896312--4541----021137999998799818999999985088-7899999999999999999999999997708
Q gi|254780677|r   78 YIAVKH--IKNL----FNFLENHWHFEEISESKCKVHFSIKYELKN-RLFDMMLKAIFDPSFLSFAKAFEERAHKIYH  148 (152)
Q Consensus        78 ~i~~~~--~~g~----f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~-~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~yg  148 (152)
                       +.+..  .+++    .......|.|+|.++|+|+|++..++.-.. ......+...+......++..+++.++..=+
T Consensus        77 -i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~e~~~~  153 (155)
T 1zxf_A           77 -LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGA  153 (155)
T ss_dssp             -EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred             -EEEEEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             -99997117765655467750699998538996799999913576661568999866755499999999998603027


No 42 
>>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=97.86  E-value=0.00013  Score=49.54  Aligned_cols=126  Identities=8%  Similarity=0.005  Sum_probs=75.7

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEE-
Q ss_conf             7248999835987999999875742310187520579997268888419999999623126899988861576620896-
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIA-   80 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~-   80 (152)
                      ..++.++.|++||++||++++|.+.|++|+|-+.+..    ...|..  +    .+.......++.   .++++..+.. 
T Consensus        11 ~~i~~~~~i~ap~e~Vw~a~td~~~~~~W~~~~~~~~----~~~Gg~--~----~~~~~~~~g~i~---~~~p~~~i~~~   77 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLE----ADRGGK--F----HMVDGNVSGEFT---DLVPEKHIVMK   77 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCC----CSTTCC--C----BBTTTTEECCEE---EEETTTEEEEE
T ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCC----CEECCE--E----EEEEECCCEEEE---EECCCCEEEEE
T ss_conf             6999999979999999999739899732324554334----311424--8----999602226899---98079889999


Q ss_pred             EECCCC-CEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             312454-102113799999879981899999998508878999999999999999999999999977
Q gi|254780677|r   81 VKHIKN-LFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKI  146 (152)
Q Consensus        81 ~~~~~g-~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~  146 (152)
                      +...++ ........|+|.+.+ ++|++++........+.-..     ...-.+.+++++++.++..
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~-----~~~~~~~~l~~Lk~~le~~  138 (145)
T 1x53_A           78 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIPAPEEERT-----RQGWQRYYFEGIKQTFGYG  138 (145)
T ss_dssp             EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEEHHHHHHH-----HHTTHHHHHHHHHHHTCCC
T ss_pred             EEECCCCCCCCEEEEEEEEECC-CEEEEEEEEECCCCHHHHHH-----HHHHHHHHHHHHHHHCCCC
T ss_conf             8705677887579999999869-91899999978980379999-----8778899999999862089


No 43 
>>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics, PSI, protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=88.69  E-value=1.8  Score=23.02  Aligned_cols=107  Identities=15%  Similarity=0.049  Sum_probs=63.5

Q ss_pred             CEEEEEEECC---------CHHHHHH-HHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             2489998359---------8799999-98757423101875205799972688884199999996231268999888615
Q gi|254780677|r    3 HFTADRIVNH---------SSQQMLS-LVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRI   72 (152)
Q Consensus         3 ~~~~~~~i~~---------~~e~i~~-iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~   72 (152)
                      +|++..-++.         ..+|+|. |+.-+++=..|+|++.+++|++++.    +.+.-++.++.+.+.+    +++.
T Consensus         2 ~feh~i~~n~P~nP~~p~LT~~QlW~GL~~kar~P~~Fvp~i~~c~Vl~e~~----~~l~Rel~f~~~~v~e----~v~~   73 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDG----DRLHRRLYLPGLVVED----EVVL   73 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECS----SEEEEEEEETTEEEEE----EEEE
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECC----CEEEEEEEECCCEEEE----EEEE
T ss_conf             6157785169999877765899999788981568757402043699998239----8199999987865688----8997


Q ss_pred             CCCCEEEEEECCCCCEEEE-EEEEEEEECCCCCEEEEEEEEEEECCH
Q ss_conf             7662089631245410211-379999987998189999999850887
Q gi|254780677|r   73 NQKEHYIAVKHIKNLFNFL-ENHWHFEEISESKCKVHFSIKYELKNR  118 (152)
Q Consensus        73 ~~~~~~i~~~~~~g~f~~~-~g~W~f~~~~~~~t~V~~~l~fe~~~~  118 (152)
                      .++.+ +.+.+.+-+.... ...=.+++-.+|.--++|..+-.++..
T Consensus        74 ~~~~~-V~f~~~~~~~~~G~~lt~~I~ep~~g~L~ltf~ye~~~p~~  119 (157)
T 2ffs_A           74 KAPDS-AHYSIKPSAEVAGGSLDXTIEEPEPGSLFVRFAYCTRYLQP  119 (157)
T ss_dssp             ETTTE-EEEEECCCSSSBEEEEEEEEEEEETTEEEEEEEEEEECSCC
T ss_pred             CCCCE-EEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCC
T ss_conf             48848-99971465677885799998028998099999997489998


No 44 
>>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str} (A:)
Probab=80.84  E-value=4.1  Score=20.71  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHC-HHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEE
Q ss_conf             972489998359879999998757423-1018752057999726888841999999962312689998886157662089
Q gi|254780677|r    1 MYHFTADRIVNHSSQQMLSLVSDIERY-PEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYI   79 (152)
Q Consensus         1 M~~~~~~~~i~~~~e~i~~iV~Dve~Y-peFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i   79 (152)
                      |=..+.+.-.+++++.+..+.+|-+-. |.++|..++..   +.+   ++.+.|.  +.++.+.....-++-.-.++-+.
T Consensus         4 ~Me~~~~i~T~hd~e~v~~ILSDP~F~lp~l~P~~k~~~---~~~---~n~f~~~--g~~~~~~~~~~g~v~v~~~~Vty   75 (139)
T 2ejx_A            4 MMKVEKEIKTNQDIDVVMTIFSDPAFTIPQIFPGIASIK---CIE---PEIFEAE--GKFLAFSYKVKGRVYKGVDEVRI   75 (139)
T ss_dssp             --CEEEEEECSSCHHHHHHHHTCHHHHHHHHSTTEEEEE---CCS---TTEEEEE--EEETTEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHCCCCEEEHHHCCCCEEEE---ECC---CCEEEEE--EECCEEEEEEEEEEEECCCEEEE
T ss_conf             389999706765888987646397547024254400036---437---8610558--40040689998789962655999


Q ss_pred             EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6312454102113799999879981899999998508878999999999999999999999
Q gi|254780677|r   80 AVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFE  140 (152)
Q Consensus        80 ~~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~  140 (152)
                      .....     ...|.-++.+.+++...+.    ++..+++-......+.+.-.+...+-|.
T Consensus        76 ~~~~~-----~G~Gki~i~~~~~~~i~i~----~eyeg~~e~~~~~~~i~~~i~~f~~~ld  127 (139)
T 2ejx_A           76 IYDSD-----RGNGILYIRKKDNNTLQII----LEHDNKLTAFLGKPYVSSNLDRLAENID  127 (139)
T ss_dssp             EEEET-----TEEEEEEEEEEETTEEEEE----EEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEC-----CCCCEEEEEECCCCEEEEE----EEEECEEEEEECHHHHHHHHHHHHHHHH
T ss_conf             99944-----8997899998379869999----9850104336017789999999887666


No 45 
>>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} (A:)
Probab=76.70  E-value=5.5  Score=19.92  Aligned_cols=47  Identities=11%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEECCCCC----EEEEEEEEEEEECCCC-CEEEEEEEEEEECCH
Q ss_conf             5766208963124541----0211379999987998-189999999850887
Q gi|254780677|r   72 INQKEHYIAVKHIKNL----FNFLENHWHFEEISES-KCKVHFSIKYELKNR  118 (152)
Q Consensus        72 ~~~~~~~i~~~~~~g~----f~~~~g~W~f~~~~~~-~t~V~~~l~fe~~~~  118 (152)
                      .|..++.+.+..++|.    ++.+...-.|.|.++| +|.+..+++|+..+.
T Consensus        43 iD~e~~~~~y~vieGd~~~~yks~~~~~~~~~~~dg~~~i~kwt~eYe~~~~   94 (122)
T 1vjh_A           43 VDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHK   94 (122)
T ss_dssp             EETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESST
T ss_pred             ECCCCCEEEEEEECCCCHHHEEEEEEEEEEEECCCCCCEEEEEEEEEEECCC
T ss_conf             9777888999998654010145889999999778999508999999997899


No 46 
>>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:)
Probab=25.61  E-value=43  Score=14.17  Aligned_cols=30  Identities=17%  Similarity=0.108  Sum_probs=20.6

Q ss_pred             EECCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             312454102113799999879981899999
Q gi|254780677|r   81 VKHIKNLFNFLENHWHFEEISESKCKVHFS  110 (152)
Q Consensus        81 ~~~~~g~f~~~~g~W~f~~~~~~~t~V~~~  110 (152)
                      ....+|||..+.|.-.=...+.+..+|.++
T Consensus        11 V~I~~GpF~g~~G~V~~id~~k~~v~V~i~   40 (58)
T 1nz9_A           11 VRVVSGPFADFTGTVTEINPERGKVKVMVT   40 (58)
T ss_dssp             EEECSGGGTTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf             999246899988999999088999999998


No 47 
>>2jz5_A Uncharacterized protein VPA0419; GFT protein structure, NESG, structural genomics, unknown function, PSI-2; NMR {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=20.66  E-value=54  Score=13.55  Aligned_cols=21  Identities=14%  Similarity=-0.009  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             999999999999997708999
Q gi|254780677|r  131 SFLSFAKAFEERAHKIYHLPS  151 (152)
Q Consensus       131 ~~~~~i~aF~~Ra~~~yg~~~  151 (152)
                      -+..++..+.++|+++...||
T Consensus        26 eAe~~l~~l~ekAk~v~se~c   46 (91)
T 2jz5_A           26 ALESELAKYIELAKSVCAGVE   46 (91)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999987434735


Done!