HHSEARCH alignment of GI: 254780677 and SCOP domain: d2d4ra1

Alignment
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}
Probab=99.89  E-value=1.8e-21  Score=154.76  Aligned_cols=140  Identities=14%  Similarity=0.226  Sum_probs=122.7

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEE
Q ss_conf             72489998359879999998757423101875205799972688884199999996231268999888615766208963
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAV   81 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~~   81 (152)
                      ++++.++.|++||+++|++|+|+++||+|+|+|.+++++++++.    ...+++.....+...++++++....++..+.+
T Consensus         1 p~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   76 (146)
T d2d4ra1           1 PEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGA----RTRSRWVAVAMGKKVRWLEEEEWDDENLRNRF   76 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCEEEEEEEECCC----CCEEEEEEEEEEEEEEEEEEEEECCCCCEEEE
T ss_conf             97899999789999999999786667764446189999985699----41689999763566999999999278988999


Q ss_pred             ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12454102113799999879981899999998508878----999999999999999999999999977
Q gi|254780677|r   82 KHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRL----FDMMLKAIFDPSFLSFAKAFEERAHKI  146 (152)
Q Consensus        82 ~~~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~----~~~~~~~~~~~~~~~~i~aF~~Ra~~~  146 (152)
                      ....|+|..+.|.|+|+|.++ +|+|++.++|+++.++    ++.+++..++...+++++++++||.+.
T Consensus        77 ~~~~g~~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          77 FSPEGDFDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             EEEEESCSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCCCCCEEEEEEEEEECCC-CEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             986588203799999975699-66999999999758637889999999999999999999999999863


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]