RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780677|ref|YP_003065090.1| hypothetical protein
CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62]
(152 letters)
>1t17_A Conserved hypothetical protein;
beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix,
structural genomics, protein structure initiative; NMR
{Caulobacter crescentus CB15} (A:)
Length = 148
Score = 91.7 bits (227), Expect = 4e-20
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
M+ +++ ++ Q+ LV D++ YP+FVP + G + A + ++
Sbjct: 1 MHRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFS 60
Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120
++ +F T+VR ++ I V + F L N W F ++ +V F I++ K+ L
Sbjct: 61 FLREKFATRVRRDKDARSIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFKSALL 119
Query: 121 DMMLKAIFDPSFLSFAKAFEERAHKIY 147
D ML A D + FE RA +++
Sbjct: 120 DAMLAANVDRAAGKLIACFEARAQQLH 146
>2rer_A Multifunctional cyclase-dehydratase-3-O-methyl transferase
TCMN; aromatase, polyketide, helix-GRIP, anticancer,
antibiotic; 1.90A {Streptomyces glaucescens} (A:)
Length = 173
Score = 82.5 bits (203), Expect = 3e-17
Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 10/154 (6%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
+VN + + + +DIE +PE + I +D G +
Sbjct: 5 AARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDG--FDFRLKTRPDAN 62
Query: 61 CMQREFMTQVRINQKEHYIAVKHI-KNLFNFLENHWHFEEISESKCKVHFSIKYELKN-- 117
E+++ ++ + + F ++ HW + ++ ++ + ++++K
Sbjct: 63 GRVWEWVSHRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGA 121
Query: 118 ----RLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147
L + K E+R +
Sbjct: 122 PFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ 155
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone
receptor, ABA, ABA sensor, drought tolerance, plant
development, SEED dormancy; HET: A8S; 1.70A {Arabidopsis
thaliana} PDB: 3k90_A* 3jrq_B* 3kdj_A* (A:44-211)
Length = 168
Score = 81.4 bits (200), Expect = 4e-17
Identities = 8/150 (5%), Positives = 31/150 (20%), Gaps = 6/150 (4%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
+ ++ + + S+V ++ + K + + +
Sbjct: 6 SCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLP 65
Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNF--LENHWHFEEISES---KCKVHFSIKYEL 115
++ + I ++ + V S ++
Sbjct: 66 -ANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDM 124
Query: 116 KNRLFDMMLKAIFDPSFLSFAKAFEERAHK 145
+ + D + A
Sbjct: 125 PEGNSEDDTRMFADTVVKLNLQKLATVAEA 154
>2d4r_A Hypothetical protein TTHA0849; start domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus HB8} (A:)
Length = 147
Score = 79.8 bits (196), Expect = 2e-16
Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 9/149 (6%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
A+R + +++ L D+E ++ + + + R+ +
Sbjct: 3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGAR----TRSRWVAVAXGK 58
Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDM 122
+ ++ + + + + F+ E W F E +V ++ YEL +F
Sbjct: 59 KVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGG 117
Query: 123 MLKAIFDPS----FLSFAKAFEERAHKIY 147
+L+ + S K EER
Sbjct: 118 LLRKLVQKLXQENVESLLKGLEERVLAAS 146
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI-
2, protein structure initiative, northeast structural
genomics consortium; 2.00A {Deinococcus radiodurans R1}
PDB: 2kcz_A (A:)
Length = 155
Score = 77.5 bits (190), Expect = 7e-16
Identities = 11/148 (7%), Positives = 39/148 (26%), Gaps = 7/148 (4%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
+ ++Q+ ++ D+ P + + V + + ++
Sbjct: 3 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSR------WTVEAPAP 56
Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFE-EISESKCKVHFSIKYELKNRL 119
+ ++ ++ IA + + F +V + Y
Sbjct: 57 LGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGS 116
Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKIY 147
++ +F+ + R +
Sbjct: 117 AGAVIARMFNQEPSQQLRDDLMRFKREQ 144
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical
protein, unknown function; 2.38A {Streptococcus mutans}
PDB: 2b79_A (A:)
Length = 155
Score = 72.5 bits (177), Expect = 2e-14
Identities = 13/147 (8%), Positives = 38/147 (25%), Gaps = 9/147 (6%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
F+ + VN + + S + ++ + +++ + G+ M +
Sbjct: 17 SMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQ----KGKMKMEDM 72
Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN-RL 119
+ +VR NQ F + E + + S+ +
Sbjct: 73 PELAFTLVEVRENQCFSD----LTATPFGNVLFEHEILENPDGTISLRHSVSLTDSDTTE 128
Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKI 146
+ ++ +
Sbjct: 129 EALAFLKQIFADVPESVGKLKQILETV 155
>2kf2_A Putative polyketide cyclase; aromatase/cyclase, ARO/CYC,
structural genomics, PSI-2, protein structure
initiative; NMR {Streptomyces coelicolor A3} (A:)
Length = 167
Score = 71.0 bits (173), Expect = 7e-14
Identities = 16/148 (10%), Positives = 54/148 (36%), Gaps = 6/148 (4%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
H + + + + ++ +DIE++P V + RD+ +M +
Sbjct: 4 HTDNEITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRDDDK--VTFRLTMHPDADGK 61
Query: 63 QREFMTQVRINQKEHYIAVKHIKN-LFNFLENHWHFEEISESKCKVHFSIKYELKN--RL 119
++++ + + + ++ F ++ W + E +E + ++ + +K +
Sbjct: 62 VWSWVSERVADPVTRTVRAQRVETGPFQYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPV 120
Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKIY 147
D + + + + +R +
Sbjct: 121 DDAWMTDNINRNSRTQMALIRDRIEQAA 148
>2pcs_A Conserved protein; structural genomics, unknown function,
ligand binding, PSI- 2, protein structure initiative;
HET: UNL; 2.40A {Geobacillus kaustophilus HTA426} (A:)
Length = 162
Score = 70.2 bits (171), Expect = 1e-13
Identities = 15/150 (10%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
+ + + +++ S + D + + CK + + D Y A + I A +
Sbjct: 4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYK------ADLQIGIAAV 57
Query: 63 QREFMTQVRI-----NQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN 117
+ ++ + + + F E I++ ++ ++ E+
Sbjct: 58 KGKYDAIIEVTDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGG 117
Query: 118 RLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147
++ + + + F ++ K
Sbjct: 118 KVAAIG-QRMLGGVAKLLISDFFKKIQKEI 146
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14
BUR153, structural genomics, PSI-2; 2.20A {Bacillus
thuringiensis serovarkonkukian} PDB: 3cnw_A (A:)
Length = 146
Score = 69.3 bits (169), Expect = 2e-13
Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 11/149 (7%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
H T + S++Q+ L+ P+++P + E + +
Sbjct: 3 HTTTSXEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRV------RHLANPDGETI 56
Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISE-SKCKVHFSIKYELK---NR 118
+ Y ++ + + +E +E + V +S + +
Sbjct: 57 IERLEVFNDKERYYTY-SIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDE 115
Query: 119 LFDMMLKAIFDPSFLSFAKAFEERAHKIY 147
++ I+ + AF + H +
Sbjct: 116 EAINLVHGIYSDGLKALQHAFLDLEHHHH 144
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant
hormone receptor, abscisic acid; HET: A8S; 2.05A
{Arabidopsis thaliana} (A:48-208)
Length = 161
Score = 67.2 bits (163), Expect = 9e-13
Identities = 7/155 (4%), Positives = 29/155 (18%), Gaps = 13/155 (8%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
+ ++ + + S+V +R + K + E ++
Sbjct: 6 RCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLP 65
Query: 61 CMQREFMTQVRINQKEHYIAVKHIK--NLFNFLENHWHFEEISESKCKVHFSIKYELK-- 116
++ + ++ + + +
Sbjct: 66 -ANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYV 124
Query: 117 --------NRLFDMMLKAIFDPSFLSFAKAFEERA 143
+ + + A E
Sbjct: 125 VDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 159
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved
protein, structural genomics, PSI, protein structure
initiative; 1.80A {Aeropyrum pernix} (A:)
Length = 157
Score = 65.5 bits (159), Expect = 3e-12
Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 4/145 (2%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
+ V+ + +++ ++D +R+ P K V + + E+ ++ +
Sbjct: 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTI--ELRLSLGPLRGDAR 71
Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDM 122
R + K + E +V + + + M
Sbjct: 72 VRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASM 130
Query: 123 MLKAIFDPSFLSFAKAFEERAHKIY 147
+ D +
Sbjct: 131 G-GRVLDSLARRMINDVISGVKREL 154
>3kdh_A PYL2, putative uncharacterized protein AT2G26040; hormone
receptor; 1.65A {Arabidopsis thaliana} PDB: 3kdi_A*
(A:29-190)
Length = 162
Score = 57.9 bits (139), Expect = 6e-10
Identities = 12/152 (7%), Positives = 38/152 (25%), Gaps = 9/152 (5%)
Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
+ ++ + + L+ + + K+ + D + V ++ A
Sbjct: 6 TCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPA 65
Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYE------ 114
E + V + + V ++ ++ E +++ E
Sbjct: 66 STSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDI 125
Query: 115 ---LKNRLFDMMLKAIFDPSFLSFAKAFEERA 143
M + + + A
Sbjct: 126 PEGNTEEDTKMFVDTVVKLNLQKLGVAATSAP 157
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 2.35A {Agrobacterium tumefaciens
str} (A:)
Length = 156
Score = 42.6 bits (100), Expect = 2e-05
Identities = 11/127 (8%), Positives = 29/127 (22%), Gaps = 14/127 (11%)
Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62
V ++ ++ P + + + +++
Sbjct: 28 SRIIHLSVEKPWAEVYDFAANPGNXPRWAAGLAGGLEADGEDWIAK-----------GGP 76
Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN--RLF 120
E + + I + N + S +V F++ F
Sbjct: 77 LGEVRVNFAPHNEFGVIDHVVTLPDGLKVYNALRVTP-NGSGTEVSFTLLRLEGXTDEDF 135
Query: 121 DMMLKAI 127
+ AI
Sbjct: 136 EQDASAI 142
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine
biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE
LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* (A:)
Length = 201
Score = 33.5 bits (76), Expect = 0.014
Identities = 16/145 (11%), Positives = 46/145 (31%), Gaps = 6/145 (4%)
Query: 3 HFTADRIVNHSSQQMLSLVSD---IERYPEFVPLCKKVVIHERD-NYGENEVLVASMTIN 58
+ V S+ + ++ S + P+ +P + + D G
Sbjct: 30 VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDXTFVPGEF 89
Query: 59 YACMQREFMTQVRINQKEHYIAVK--HIKNLFNFLENHWHFEEISESKCKVHFSIKYELK 116
+ +F+ ++ + ++ ++ + + H + C + S +Y +K
Sbjct: 90 PHEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVK 149
Query: 117 NRLFDMMLKAIFDPSFLSFAKAFEE 141
++ I + A A +
Sbjct: 150 PEFVKIVEPLITTGPLAAXADAISK 174
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 27.1 bits (59), Expect = 1.2
Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 51 LVASMTINYACMQREFMTQVRINQKEHYIAVK-------HIKNLFNFLEN--HWHFEEIS 101
+ + A ++ + + + + I + +K + + +E
Sbjct: 212 MGKYTEVKTAFGIKD--SVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269
Query: 102 ESKCKVHFS-----IKYELKNRLFDMMLKAIFDPSFLSFAKAF 139
+ IK+ L ++ A F +A+ F
Sbjct: 270 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV,
phosphoprotein, isopeptide bond, protein binding; 2.05A
{Mus musculus} (A:1-194)
Length = 194
Score = 25.4 bits (55), Expect = 3.2
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 75 KEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120
++ + + F LE ++ S K + SI +L +
Sbjct: 98 RKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTW 143
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, membrane
fusion, snare, RAB GTPase; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A (A:396-651)
Length = 256
Score = 25.5 bits (56), Expect = 3.7
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 97 FEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEER-AHKIYHLPS 151
IS+ + S K + + M+ FD F K E IY
Sbjct: 186 LGFISKHELYSRASQKPQPNFPSPEYMI---FDHEFTKLVKELEGVITKAIYKSSE 238
>2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter
tengcongensis MB4} PDB: 2vh4_A 2pee_A
(A:36-174,A:266-338)
Length = 212
Score = 24.7 bits (53), Expect = 5.9
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 108 HFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147
+ ++ L + + F P F+K + +Y
Sbjct: 141 KYEYTIKMNETLESLGMTDAFLPDKADFSKLGKSDIGNLY 180
>1sng_A COG4826: serine protease inhibitor; serine protease
inhibitor (serpin), native state., hydrolase inhibitor;
1.76A {Thermobifida fusca} (A:39-173,A:261-322)
Length = 197
Score = 23.8 bits (51), Expect = 9.9
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 12/88 (13%)
Query: 54 SMTINYACMQREFMTQVRINQKEHYIAVKHIKNLFN----------FLENHWHFEEISES 103
S + +N I+ L L N + +
Sbjct: 75 SDVRTADFRTNPEGVRATVNADIADATRGMIRELLPQGAVTPDLRAILTNALWAKARWTT 134
Query: 104 KCKVHFSIKYELKNRLFDMMLKAIFDPS 131
++ ++L L + ++ +F S
Sbjct: 135 PFELTQP--HQLVEVLAEAGVRTLFTAS 160
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.136 0.409
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,222,514
Number of extensions: 52208
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 45
Length of query: 152
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 71
Effective length of database: 2,217,844
Effective search space: 157466924
Effective search space used: 157466924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)