BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780677|ref|YP_003065090.1| hypothetical protein
CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62]
         (152 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780677|ref|YP_003065090.1| hypothetical protein CLIBASIA_02820 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 152

 Score =  315 bits (808), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60
           MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA
Sbjct: 1   MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60

Query: 61  CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120
           CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF
Sbjct: 61  CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120

Query: 121 DMMLKAIFDPSFLSFAKAFEERAHKIYHLPSL 152
           DMMLKAIFDPSFLSFAKAFEERAHKIYHLPSL
Sbjct: 121 DMMLKAIFDPSFLSFAKAFEERAHKIYHLPSL 152


>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 511

 Score = 23.1 bits (48), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 18/21 (85%)

Query: 7   DRIVNHSSQQMLSLVSDIERY 27
           +++++ +  Q++SLVS+++RY
Sbjct: 407 NQLIHRALAQVISLVSEVDRY 427


>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 397

 Score = 22.7 bits (47), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 45  YGENEVLVASMTINYACMQREFMTQVRINQKEHYIAVKHIKNL 87
           Y  ++ L A M+      Q+ FM    I +  HY     IK L
Sbjct: 221 YQSSDSLDALMSTESVLNQKSFMRVTMIPESVHYTDTGSIKAL 263


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 22.7 bits (47), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 90  FLENHWHFEEISESKCK 106
           FLE   H E+++E+ C+
Sbjct: 244 FLETGLHLEDLTETTCQ 260


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 21.9 bits (45), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 71  RINQKEHYIAVKHIKNLFNFLENHWHFEE 99
           RIN  + Y+     KN F+    H+H +E
Sbjct: 344 RININQIYLTGTGEKNSFDMRALHYHIQE 372


>gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 418

 Score = 21.2 bits (43), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 125 KAIFDPSFLSFAKAFEERAHKIYH 148
           K +F+P FLS+   F+   + + H
Sbjct: 89  KQLFEPKFLSWLSDFQLPEYDLSH 112


>gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 357

 Score = 21.2 bits (43), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 114 ELKNRLFDMMLKAIFDPSFLSFAKAFEERA 143
           +LKNR  ++ L+    PS  ++ K  EE A
Sbjct: 11  DLKNRFAEIELRMSESPSVDAYIKLTEEYA 40


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,511
Number of Sequences: 1233
Number of extensions: 3490
Number of successful extensions: 17
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 152
length of database: 328,796
effective HSP length: 67
effective length of query: 85
effective length of database: 246,185
effective search space: 20925725
effective search space used: 20925725
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 34 (17.7 bits)