RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|39090 KOG3887, KOG3887, KOG3887, Predicted small GTPase involved in
          nuclear protein import [Intracellular trafficking,
          secretion, and vesicular transport].
          Length = 347

 Score = 27.6 bits (61), Expect = 0.68
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 15 LEPDKRKKNT-----HRKRGKHNDRKILFNHIPFPLRTAIL--ALRITLTSISFSPIKLY 67
           E D   K        R+ GK + +K++F+ +  P  T  L    +IT   IS S I   
Sbjct: 20 AEADSGMKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQ 78

Query: 68 TRALSFKYCVF 78
                +   F
Sbjct: 79 VWDFPGQMDFF 89


>gnl|CDD|36139 KOG0921, KOG0921, KOG0921, Dosage compensation complex, subunit MLE
           [Transcription].
          Length = 1282

 Score = 27.6 bits (60), Expect = 0.81
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 25  HRKRGKHNDRKILFNHIPFPLRTAILALRITLTSISFSPI 64
           H +      RK +F  +P  +   IL+  I  TSI+   +
Sbjct: 681 HSQLTSQEQRK-VFEPVPEGVTKIILSTNIAETSITIDDV 719


>gnl|CDD|99963 cd03788, GT1_TPS, Trehalose-6-Phosphate Synthase (TPS) is a
           glycosyltransferase that catalyses the synthesis of
           alpha,alpha-1,1-trehalose-6-phosphate from
           glucose-6-phosphate using a UDP-glucose donor. It is a
           key enzyme in the trehalose synthesis pathway. Trehalose
           is a nonreducing disaccharide present in a wide variety
           of organisms and may serve as a source of energy and
           carbon. It is characterized most notably in insect,
           plant, and microbial cells. Its production is often
           associated with a variety of stress conditions,
           including desiccation, dehydration, heat, cold, and
           oxidation. This family represents the catalytic domain
           of the TPS. Some members of this domain family coexist
           with a C-terminal trehalose phosphatase domain..
          Length = 460

 Score = 26.7 bits (60), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)

Query: 26  RKRGKHNDRKI-LFNHIPFP 44
           R+RG     +I  F HIPFP
Sbjct: 150 RERGPDA--RIGFFLHIPFP 167


>gnl|CDD|36796 KOG1583, KOG1583, KOG1583, UDP-N-acetylglucosamine transporter
           [Carbohydrate transport and metabolism].
          Length = 330

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 21  KKNTHRKRGKHNDRKILFNH-IPFPL 45
           ++ T++K GKH    + + H +  PL
Sbjct: 183 QETTYQKYGKHWKEALFYTHFLSLPL 208


>gnl|CDD|144428 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein. 
          Length = 96

 Score = 24.8 bits (55), Expect = 5.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 19 KRKKNTHRKRG 29
          KR+KN  +K+G
Sbjct: 78 KRRKNYRKKQG 88


>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
           metallophosphatase domain.  CSTP1 (complete
           S-transactivated protein 1) is an uncharacterized Homo
           sapiens protein with a metallophosphatase domain, that
           is transactivated by the complete S protein of hepatitis
           B virus.  CSTP1 belongs to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets. This domain is thought to allow for
           productive metal coordination.
          Length = 262

 Score = 24.6 bits (54), Expect = 7.1
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 18  DKRKKNTHRKRGKHNDRKILFNHIPFPLRTA 48
           +++ +       KH    I+F HIP+ L   
Sbjct: 154 EEQLEIAKESDCKH---VIVFQHIPWFLEDP 181


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,342,124
Number of extensions: 62914
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 15
Length of query: 108
Length of database: 6,263,737
Length adjustment: 75
Effective length of query: 33
Effective length of database: 4,643,062
Effective search space: 153221046
Effective search space used: 153221046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)