RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit
           B; structural genomics, NPPSFA; 1.43A {Pyrococcus
           horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:1-189)
          Length = 189

 Score = 25.3 bits (54), Expect = 3.0
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 63  PIKLYTRALSFKYCVFKGILFNHSKKHPF 91
           P++   +    +   F G+      + PF
Sbjct: 160 PLRDLYKDEVRELAKFLGLPEKIYNRMPF 188


>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein);
           ataxia with vitamin E deficiency, transport protein;
           HET: MSE VIV; 1.50A {Homo sapiens} (A:75-262)
          Length = 188

 Score = 24.4 bits (52), Expect = 5.6
 Identities = 7/42 (16%), Positives = 14/42 (33%)

Query: 1   MISAPPLLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIP 42
           +I+ P +       ++P   +K   R     N+ K       
Sbjct: 106 LINEPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHF 147


>1uqt_A Alpha, alpha-trehalose-phosphate synthase;
           glycosyltransferase, transferase; HET: U2F; 2.0A
           {Escherichia coli} (A:1-227,A:445-482)
          Length = 265

 Score = 23.7 bits (51), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)

Query: 28  RGKHNDRKI-LFNHIPFP 44
           R +  + +I  F HIPFP
Sbjct: 142 RKRGVNNRIGFFLHIPFP 159


>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo
          sapiens} (A:)
          Length = 146

 Score = 23.6 bits (51), Expect = 9.9
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 32 NDRKILFNHIPFPLRTAILALRITLTSISFSPIKLYTRALSFKYCVFKG 80
          N  KI F         ++  + I  ++ +   +        F+  V K 
Sbjct: 37 NGLKIEFTFERSNTNPSVTVITIQASNSTELDMT----DFVFQAAVPKT 81


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 775,748
Number of extensions: 29867
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 4,956,049
Length adjustment: 64
Effective length of query: 44
Effective length of database: 2,792,529
Effective search space: 122871276
Effective search space used: 122871276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)