RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 22/65 (33%)

Query: 2   ISAPP--LLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSI 59
           +S PP  L   N  L     RK     K     D+    + IPF  R     L+ +    
Sbjct: 379 VSGPPQSLYGLNLTL-----RK----AKAPSGLDQ----SRIPFSER----KLKFSN--- 418

Query: 60  SFSPI 64
            F P+
Sbjct: 419 RFLPV 423



 Score = 26.1 bits (57), Expect = 1.9
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 6/40 (15%)

Query: 34 RKILFNHIPFPLRTAILALRITLTSISFSPIKLYTRALSF 73
          ++     +P P  T   A     T+    P +L  + L +
Sbjct: 34 QEQFNKILPEP--TEGFAADDEPTT----PAELVGKFLGY 67


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 1.6
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query: 3  SAPPLLITNKKLLE 16
          SAP L I  K  +E
Sbjct: 36 SAPALAI--KATME 47


>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
           {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
           d.67.1.1 d.104.1.1 PDB: 1nyq_A*
          Length = 645

 Score = 24.3 bits (52), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 18  DKRKKNTHRKRGKHNDRKILFNHIP 42
           ++RK+  HRK GK  +   LF +  
Sbjct: 236 EERKERDHRKIGKELE---LFTNSQ 257


>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose
           utilization, blood group antigen; HET: A2G GAL FUC;
           1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A*
           2wmi_B*
          Length = 606

 Score = 24.1 bits (52), Expect = 8.2
 Identities = 1/36 (2%), Positives = 8/36 (22%), Gaps = 2/36 (5%)

Query: 39  NHIPFPLRTAILALRITLTSISFSPIKLYTRALSFK 74
                   +    + +     ++   +  +  L   
Sbjct: 468 QTGKLKFNSL--EMNVEFEPHTYGIFERISNGLKVN 501


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 891,720
Number of extensions: 35959
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 5,693,230
Length adjustment: 72
Effective length of query: 36
Effective length of database: 3,947,662
Effective search space: 142115832
Effective search space used: 142115832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)