BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  216 bits (550), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MISAPPLLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSIS 60
           MISAPPLLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSIS
Sbjct: 1   MISAPPLLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSIS 60

Query: 61  FSPIKLYTRALSFKYCVFKGILFNHSKKHPFIFPRLQNIPSGRTQYAL 108
           FSPIKLYTRALSFKYCVFKGILFNHSKKHPFIFPRLQNIPSGRTQYAL
Sbjct: 61  FSPIKLYTRALSFKYCVFKGILFNHSKKHPFIFPRLQNIPSGRTQYAL 108


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 22.3 bits (46), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 57  TSISFSPIKLYTRALSFKYCVFKGILFNHSKKHPFIFPRLQNIPSGRTQYAL 108
           TSIS+  IK+  R   F     +  L    +    +F R     S R  + +
Sbjct: 73  TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 21.9 bits (45), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 43  FPLRTAILALRITLTSISFSPIKLYTRALSFKYCVFKGILFNHSKKHP 90
           F +R A + L +  T      ++ Y    SF +      LFN   +HP
Sbjct: 320 FFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 21.6 bits (44), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 11  NKKLLEPDKRK 21
           N KL+EPDKR+
Sbjct: 102 NIKLIEPDKRQ 112


>gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 360

 Score = 21.2 bits (43), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 39  NHIPFPLRTAILALRITLTSISFSPIKLYTRALSFKYCVFKGILFN 84
           +H+   + TAI+A+      ISF+ + +Y         + KG +FN
Sbjct: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL--------LIKGNIFN 277


>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 707

 Score = 20.4 bits (41), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 3   SAPPLLITNKKLLEPDKRKKNTHRKRGKH 31
           S P  L   +KLL   K K NT++  G H
Sbjct: 183 SLPIDLRLKQKLLSEAKEKLNTNQIIGAH 211


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.142    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,110
Number of Sequences: 1233
Number of extensions: 2564
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 32 (16.9 bits)