Query         gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 14:40:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780679.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2i6h_A AGR_C_189P, hypothetic  28.8      27  0.0008   15.7   1.5   24   21-44     78-101 (133)
  2 >3cnf_A VP1; cytoplasmic polyh  13.4      85  0.0025   12.7   4.5   36    9-50    136-171 (556)
  3 >1xi4_A Clathrin heavy chain;   12.4      57  0.0017   13.7   0.2   15   93-107    31-45  (45)
  4 >1bpo_A Protein (clathrin); cl  10.8      58  0.0017   13.7  -0.2   15   93-107    31-45  (45)
  5 >1dof_A Adenylosuccinate lyase   9.2      65  0.0019   13.4  -0.4   16   43-58     47-62  (124)
  6 >3bhg_A Adenylosuccinate lyase   9.1      66   0.002   13.3  -0.4   13   44-56     47-59  (124)
  7 >2j91_A Adenylosuccinate lyase   9.1      67   0.002   13.3  -0.4   37   23-59     27-65  (141)
  8 >2hwk_A Helicase NSP2; rossman   8.9      86  0.0025   12.7   0.1   16   81-96     27-42  (49)
  9 >3dyt_A Sorting nexin-9; 3-hel   8.9      41  0.0012   14.6  -1.6   25   42-66     20-47  (124)
 10 >2ajj_A NS5A, nonstructural pr   8.7 1.3E+02  0.0037   11.7   1.1   17   26-42      5-22  (28)

No 1  
>>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} (A:1-133)
Probab=28.77  E-value=27  Score=15.67  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             649999999962034016799999
Q gi|254780679|r   21 CTFKSILHLICSLKYFPRNIYKIF   44 (129)
Q Consensus        21 ctfksilhlicslkyfprniykif   44 (129)
                      -+-...|-||--|.-||||||.--
T Consensus        78 ~~p~g~LALIILlDQfpRNifRg~  101 (133)
T 2i6h_A           78 EGAESSLALXLLLDQFPRNCFRGT  101 (133)
T ss_dssp             GSHHHHHHHHHHHTTHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             617889899999989999885598


No 2  
>>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:376-591,A:687-968,A:1276-1333)
Probab=13.43  E-value=85  Score=12.69  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999649999999962034016799999999862
Q gi|254780679|r    9 LLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQ   50 (129)
Q Consensus         9 lltimllciiftctfksilhlicslkyfprniykifsniyqq   50 (129)
                      +|...|.|+.|.-+|+++..-||..      +|++|+-.|.+
T Consensus       136 iLE~ILFsifFPnlt~~ikG~Iqnv------lL~f~~~~fp~  171 (556)
T 3cnf_A          136 VLEFILFALFFPTEFNRIKGDIQNV------LLLFFSRWYPV  171 (556)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_conf             9999999985708899875789999------99999997168


No 3  
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:23-67)
Probab=12.37  E-value=57  Score=13.71  Aligned_cols=15  Identities=33%  Similarity=0.853  Sum_probs=10.6

Q ss_pred             CCHHHHCCHHHCCCH
Q ss_conf             340421170115530
Q gi|254780679|r   93 INLREKKQPQRKPIT  107 (129)
Q Consensus        93 inlrekkqpqrkpit  107 (129)
                      |+|....+|.|+||+
T Consensus        31 Vdl~n~n~v~Rrpis   45 (45)
T 1xi4_A           31 IDMNDPSNPIRRPIS   45 (45)
T ss_pred             EECCCCCCCCCCCCC
T ss_conf             988998865458876


No 4  
>>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS; 2.60A {Rattus norvegicus} (A:23-67)
Probab=10.76  E-value=58  Score=13.71  Aligned_cols=15  Identities=33%  Similarity=0.853  Sum_probs=10.5

Q ss_pred             CCHHHHCCHHHCCCH
Q ss_conf             340421170115530
Q gi|254780679|r   93 INLREKKQPQRKPIT  107 (129)
Q Consensus        93 inlrekkqpqrkpit  107 (129)
                      |+|....+|.|+||+
T Consensus        31 Vdl~n~n~v~Rrpis   45 (45)
T 1bpo_A           31 IDMNDPSNPIRRPIS   45 (45)
T ss_dssp             EETTSTTSCEEEECC
T ss_pred             EECCCCCCCCCCCCC
T ss_conf             988998764205545


No 5  
>>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} (A:214-337)
Probab=9.20  E-value=65  Score=13.38  Aligned_cols=16  Identities=19%  Similarity=-0.018  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHCHHHHH
Q ss_conf             9999986221203466
Q gi|254780679|r   43 IFSNIYQQKHNTASFH   58 (129)
Q Consensus        43 ifsniyqqkhntasfh   58 (129)
                      .-|-|--||.|...+.
T Consensus        47 ~gSSiMPqKrNP~~~E   62 (124)
T 1dof_A           47 GGSSAMPHKANPTASE   62 (124)
T ss_dssp             ---------CCCHHHH
T ss_pred             CCHHHHCCCCCCCCHH
T ss_conf             6104530565532047


No 6  
>>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Legionella pneumophila subsp} (A:251-374)
Probab=9.13  E-value=66  Score=13.34  Aligned_cols=13  Identities=23%  Similarity=0.081  Sum_probs=5.3

Q ss_pred             HHHHHHHHHCHHH
Q ss_conf             9999862212034
Q gi|254780679|r   44 FSNIYQQKHNTAS   56 (129)
Q Consensus        44 fsniyqqkhntas   56 (129)
                      =|-|--||.|...
T Consensus        47 gSS~MPqKrNP~~   59 (124)
T 3bhg_A           47 GSSTXPHKVNPID   59 (124)
T ss_dssp             -CCSSCCCCCTHH
T ss_pred             CCCCCCCCCCCCH
T ss_conf             6300201357425


No 7  
>>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purine biosynthesis, alternative splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* (A:261-401)
Probab=9.11  E-value=67  Score=13.33  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             99999999620340--16799999999862212034666
Q gi|254780679|r   23 FKSILHLICSLKYF--PRNIYKIFSNIYQQKHNTASFHR   59 (129)
Q Consensus        23 fksilhlicslkyf--prniykifsniyqqkhntasfhr   59 (129)
                      |-.-|.+.++-.+.  +-.-+..=|-|--||.|...+..
T Consensus        27 ~a~Dl~~~~~~e~~~~~~~~~~~gSSiMPqKrNP~~~E~   65 (141)
T 2j91_A           27 ICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSER   65 (141)
T ss_dssp             HHHHHHHHHHHTSEECCC-----------CCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCHHHHH
T ss_conf             999999987266748834655662156550244147765


No 8  
>>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} (A:92-140)
Probab=8.93  E-value=86  Score=12.67  Aligned_cols=16  Identities=44%  Similarity=0.650  Sum_probs=12.9

Q ss_pred             EECCCCCCCCCCCCHH
Q ss_conf             4126785427643404
Q gi|254780679|r   81 ISTNTNKDKKPRINLR   96 (129)
Q Consensus        81 istntnkdkkprinlr   96 (129)
                      +.|+|-+|-.|+||+-
T Consensus        27 ~~t~tlr~Y~P~iN~V   42 (49)
T 2hwk_A           27 MNTGTLRNYDPRINLV   42 (49)
T ss_dssp             TTTSSEECCCTTSCCS
T ss_pred             ECCCCCCCCCCCCCEE
T ss_conf             3478442588654330


No 9  
>>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* (A:1-18,A:148-160,A:274-366)
Probab=8.89  E-value=41  Score=14.61  Aligned_cols=25  Identities=20%  Similarity=0.358  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHC---HHHHHHHHHHHHH
Q ss_conf             999999862212---0346665422210
Q gi|254780679|r   42 KIFSNIYQQKHN---TASFHRASLQKKD   66 (129)
Q Consensus        42 kifsniyqqkhn---tasfhraslqkkd   66 (129)
                      .|||++|++-+|   .-.-|++.|+|+.
T Consensus        20 ~~ft~~~~~~~~fpq~~~~~k~al~K~r   47 (124)
T 3dyt_A           20 XIFSTXEPEAPDFPDIIGTHKGAIEKVK   47 (124)
T ss_dssp             GGGGGEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             6652036777647999999999999999


No 10 
>>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A (A:)
Probab=8.66  E-value=1.3e+02  Score=11.70  Aligned_cols=17  Identities=41%  Similarity=0.573  Sum_probs=9.3

Q ss_pred             HHHHHHHHH-HHHHHHHH
Q ss_conf             999996203-40167999
Q gi|254780679|r   26 ILHLICSLK-YFPRNIYK   42 (129)
Q Consensus        26 ilhlicslk-yfprniyk   42 (129)
                      ||.||+||. -.-|.+-|
T Consensus         5 ildliy~lhkqinrglkk   22 (28)
T 2ajj_A            5 VLDLIYSLHKQINRGLKK   22 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999888998


Done!