Query gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:40:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780679.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2i6h_A AGR_C_189P, hypothetic 28.8 27 0.0008 15.7 1.5 24 21-44 78-101 (133) 2 >3cnf_A VP1; cytoplasmic polyh 13.4 85 0.0025 12.7 4.5 36 9-50 136-171 (556) 3 >1xi4_A Clathrin heavy chain; 12.4 57 0.0017 13.7 0.2 15 93-107 31-45 (45) 4 >1bpo_A Protein (clathrin); cl 10.8 58 0.0017 13.7 -0.2 15 93-107 31-45 (45) 5 >1dof_A Adenylosuccinate lyase 9.2 65 0.0019 13.4 -0.4 16 43-58 47-62 (124) 6 >3bhg_A Adenylosuccinate lyase 9.1 66 0.002 13.3 -0.4 13 44-56 47-59 (124) 7 >2j91_A Adenylosuccinate lyase 9.1 67 0.002 13.3 -0.4 37 23-59 27-65 (141) 8 >2hwk_A Helicase NSP2; rossman 8.9 86 0.0025 12.7 0.1 16 81-96 27-42 (49) 9 >3dyt_A Sorting nexin-9; 3-hel 8.9 41 0.0012 14.6 -1.6 25 42-66 20-47 (124) 10 >2ajj_A NS5A, nonstructural pr 8.7 1.3E+02 0.0037 11.7 1.1 17 26-42 5-22 (28) No 1 >>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} (A:1-133) Probab=28.77 E-value=27 Score=15.67 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 649999999962034016799999 Q gi|254780679|r 21 CTFKSILHLICSLKYFPRNIYKIF 44 (129) Q Consensus 21 ctfksilhlicslkyfprniykif 44 (129) -+-...|-||--|.-||||||.-- T Consensus 78 ~~p~g~LALIILlDQfpRNifRg~ 101 (133) T 2i6h_A 78 EGAESSLALXLLLDQFPRNCFRGT 101 (133) T ss_dssp GSHHHHHHHHHHHTTHHHHHSTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 617889899999989999885598 No 2 >>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:376-591,A:687-968,A:1276-1333) Probab=13.43 E-value=85 Score=12.69 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999649999999962034016799999999862 Q gi|254780679|r 9 LLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQ 50 (129) Q Consensus 9 lltimllciiftctfksilhlicslkyfprniykifsniyqq 50 (129) +|...|.|+.|.-+|+++..-||.. +|++|+-.|.+ T Consensus 136 iLE~ILFsifFPnlt~~ikG~Iqnv------lL~f~~~~fp~ 171 (556) T 3cnf_A 136 VLEFILFALFFPTEFNRIKGDIQNV------LLLFFSRWYPV 171 (556) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHH T ss_conf 9999999985708899875789999------99999997168 No 3 >>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:23-67) Probab=12.37 E-value=57 Score=13.71 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=10.6 Q ss_pred CCHHHHCCHHHCCCH Q ss_conf 340421170115530 Q gi|254780679|r 93 INLREKKQPQRKPIT 107 (129) Q Consensus 93 inlrekkqpqrkpit 107 (129) |+|....+|.|+||+ T Consensus 31 Vdl~n~n~v~Rrpis 45 (45) T 1xi4_A 31 IDMNDPSNPIRRPIS 45 (45) T ss_pred EECCCCCCCCCCCCC T ss_conf 988998865458876 No 4 >>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS; 2.60A {Rattus norvegicus} (A:23-67) Probab=10.76 E-value=58 Score=13.71 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=10.5 Q ss_pred CCHHHHCCHHHCCCH Q ss_conf 340421170115530 Q gi|254780679|r 93 INLREKKQPQRKPIT 107 (129) Q Consensus 93 inlrekkqpqrkpit 107 (129) |+|....+|.|+||+ T Consensus 31 Vdl~n~n~v~Rrpis 45 (45) T 1bpo_A 31 IDMNDPSNPIRRPIS 45 (45) T ss_dssp EETTSTTSCEEEECC T ss_pred EECCCCCCCCCCCCC T ss_conf 988998764205545 No 5 >>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} (A:214-337) Probab=9.20 E-value=65 Score=13.38 Aligned_cols=16 Identities=19% Similarity=-0.018 Sum_probs=7.4 Q ss_pred HHHHHHHHHHCHHHHH Q ss_conf 9999986221203466 Q gi|254780679|r 43 IFSNIYQQKHNTASFH 58 (129) Q Consensus 43 ifsniyqqkhntasfh 58 (129) .-|-|--||.|...+. T Consensus 47 ~gSSiMPqKrNP~~~E 62 (124) T 1dof_A 47 GGSSAMPHKANPTASE 62 (124) T ss_dssp ---------CCCHHHH T ss_pred CCHHHHCCCCCCCCHH T ss_conf 6104530565532047 No 6 >>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Legionella pneumophila subsp} (A:251-374) Probab=9.13 E-value=66 Score=13.34 Aligned_cols=13 Identities=23% Similarity=0.081 Sum_probs=5.3 Q ss_pred HHHHHHHHHCHHH Q ss_conf 9999862212034 Q gi|254780679|r 44 FSNIYQQKHNTAS 56 (129) Q Consensus 44 fsniyqqkhntas 56 (129) =|-|--||.|... T Consensus 47 gSS~MPqKrNP~~ 59 (124) T 3bhg_A 47 GSSTXPHKVNPID 59 (124) T ss_dssp -CCSSCCCCCTHH T ss_pred CCCCCCCCCCCCH T ss_conf 6300201357425 No 7 >>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purine biosynthesis, alternative splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* (A:261-401) Probab=9.11 E-value=67 Score=13.33 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 99999999620340--16799999999862212034666 Q gi|254780679|r 23 FKSILHLICSLKYF--PRNIYKIFSNIYQQKHNTASFHR 59 (129) Q Consensus 23 fksilhlicslkyf--prniykifsniyqqkhntasfhr 59 (129) |-.-|.+.++-.+. +-.-+..=|-|--||.|...+.. T Consensus 27 ~a~Dl~~~~~~e~~~~~~~~~~~gSSiMPqKrNP~~~E~ 65 (141) T 2j91_A 27 ICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSER 65 (141) T ss_dssp HHHHHHHHHHHTSEECCC-----------CCCCCHHHHH T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCHHHHH T ss_conf 999999987266748834655662156550244147765 No 8 >>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} (A:92-140) Probab=8.93 E-value=86 Score=12.67 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=12.9 Q ss_pred EECCCCCCCCCCCCHH Q ss_conf 4126785427643404 Q gi|254780679|r 81 ISTNTNKDKKPRINLR 96 (129) Q Consensus 81 istntnkdkkprinlr 96 (129) +.|+|-+|-.|+||+- T Consensus 27 ~~t~tlr~Y~P~iN~V 42 (49) T 2hwk_A 27 MNTGTLRNYDPRINLV 42 (49) T ss_dssp TTTSSEECCCTTSCCS T ss_pred ECCCCCCCCCCCCCEE T ss_conf 3478442588654330 No 9 >>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* (A:1-18,A:148-160,A:274-366) Probab=8.89 E-value=41 Score=14.61 Aligned_cols=25 Identities=20% Similarity=0.358 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHC---HHHHHHHHHHHHH Q ss_conf 999999862212---0346665422210 Q gi|254780679|r 42 KIFSNIYQQKHN---TASFHRASLQKKD 66 (129) Q Consensus 42 kifsniyqqkhn---tasfhraslqkkd 66 (129) .|||++|++-+| .-.-|++.|+|+. T Consensus 20 ~~ft~~~~~~~~fpq~~~~~k~al~K~r 47 (124) T 3dyt_A 20 XIFSTXEPEAPDFPDIIGTHKGAIEKVK 47 (124) T ss_dssp GGGGGEEESSCCHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 6652036777647999999999999999 No 10 >>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A (A:) Probab=8.66 E-value=1.3e+02 Score=11.70 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=9.3 Q ss_pred HHHHHHHHH-HHHHHHHH Q ss_conf 999996203-40167999 Q gi|254780679|r 26 ILHLICSLK-YFPRNIYK 42 (129) Q Consensus 26 ilhlicslk-yfprniyk 42 (129) ||.||+||. -.-|.+-| T Consensus 5 ildliy~lhkqinrglkk 22 (28) T 2ajj_A 5 VLDLIYSLHKQINRGLKK 22 (28) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999888998 Done!