Query gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 07:54:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780679.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i6ha1 a.118.8.5 (A:1-179) Hy 34.0 7.6 0.00056 16.6 1.4 28 21-48 56-83 (179)
2 d2p6ra2 a.289.1.2 (A:489-686) 10.7 41 0.003 12.3 1.0 15 24-38 20-34 (198)
3 d2awia2 a.118.8.4 (A:71-301) P 8.8 50 0.0036 11.7 2.7 39 11-49 41-91 (231)
4 d2ftsa1 b.85.6.1 (A:654-736) G 4.2 50 0.0036 11.7 -1.3 30 54-83 17-50 (83)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 3.9 96 0.007 10.1 3.0 18 6-23 18-35 (37)
6 d1wjpa2 g.37.1.1 (A:43-66) Zin 3.6 90 0.0066 10.2 -0.3 10 30-39 5-14 (26)
7 d1szaa_ a.118.9.4 (A:) PCF11 p 3.4 1.2E+02 0.0084 9.6 1.7 20 33-52 79-98 (144)
8 d2fmla1 a.4.5.68 (A:205-268) H 3.3 1.2E+02 0.0084 9.6 2.0 42 37-78 16-58 (64)
9 d1dqaa1 d.58.20.1 (A:587-703) 2.9 1.4E+02 0.0099 9.2 0.8 13 80-92 96-108 (117)
10 d1p22a1 a.158.1.1 (A:135-252) 2.8 1.4E+02 0.011 9.0 0.5 16 1-16 27-42 (118)
No 1
>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=34.02 E-value=7.6 Score=16.60 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6499999999620340167999999998
Q gi|254780679|r 21 CTFKSILHLICSLKYFPRNIYKIFSNIY 48 (129)
Q Consensus 21 ctfksilhlicslkyfprniykifsniy 48 (129)
-+-.+.|-+|--|.-||||||.--..-|
T Consensus 56 ~~p~g~LAlIILlDQfpRNifRgt~~Af 83 (179)
T d2i6ha1 56 EGAESSLALMLLLDQFPRNCFRGTAHMY 83 (179)
T ss_dssp GSHHHHHHHHHHHTTHHHHHSTTSGGGT
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 4534078999999999999865895131
No 2
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.65 E-value=41 Score=12.25 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999962034016
Q gi|254780679|r 24 KSILHLICSLKYFPR 38 (129)
Q Consensus 24 ksilhlicslkyfpr 38 (129)
-++|||||+.-.||+
T Consensus 20 l~lLhli~~TPD~~~ 34 (198)
T d2p6ra2 20 IGALHLICRTPDMER 34 (198)
T ss_dssp HHHHHHHHHSTTSCC
T ss_pred CHHHHHHHCCCCCCC
T ss_conf 049999974999721
No 3
>d2awia2 a.118.8.4 (A:71-301) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=8.84 E-value=50 Score=11.75 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999649------------99999996203401679999999986
Q gi|254780679|r 11 TIMLLCIIFTCTF------------KSILHLICSLKYFPRNIYKIFSNIYQ 49 (129)
Q Consensus 11 timllciiftctf------------ksilhlicslkyfprniykifsniyq 49 (129)
++-|+|+|-+-.| ..+.+++-+-++|----|||.||++-
T Consensus 41 nLylliki~~s~~~~eI~~fdk~Dl~dlKk~y~sr~~ft~~DYkIlsNL~~ 91 (231)
T d2awia2 41 SIYLGYISIAHHYNIEVPTFNKTITSDLKHLYDKRTTFFGIDCEIVSNLLN 91 (231)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
T ss_conf 999999999876314477757156999999985464466420899862997
No 4
>d2ftsa1 b.85.6.1 (A:654-736) Gephyrin, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.18 E-value=50 Score=11.75 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH--H--CCCCCCCCCCCCEEEEC
Q ss_conf 034666542221--0--35686557872102412
Q gi|254780679|r 54 TASFHRASLQKK--D--IGATPTKKGNSSQLIST 83 (129)
Q Consensus 54 tasfhraslqkk--d--igatptkkgnssqlist 83 (129)
-..|+|+.|..+ | .-|+|+..-.|+.|.|-
T Consensus 17 R~ey~Ra~l~~~~~~g~~~a~~~~~Q~S~~L~sl 50 (83)
T d2ftsa1 17 RPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSM 50 (83)
T ss_dssp SCEEEEEEEECCTTCSSCEEEECCSCSSSCCCCS
T ss_pred CCEEEEEEEEEECCCCEEEEEECCCCCCHHHHHH
T ss_conf 8588999999868897099998788720789988
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.93 E-value=96 Score=10.05 Aligned_cols=18 Identities=33% Similarity=0.838 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999649
Q gi|254780679|r 6 WFDLLTIMLLCIIFTCTF 23 (129)
Q Consensus 6 wfdlltimllciiftctf 23 (129)
+..||.|..+.+.|..-|
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999870
No 6
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=90 Score=10.22 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q ss_conf 9620340167
Q gi|254780679|r 30 ICSLKYFPRN 39 (129)
Q Consensus 30 icslkyfprn 39 (129)
.|||.+|.-.
T Consensus 5 ycslrf~sp~ 14 (26)
T d1wjpa2 5 YCSLRFFSPE 14 (26)
T ss_dssp TTCCCBSSHH
T ss_pred CCEEEECCHH
T ss_conf 5022437977
No 7
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.35 E-value=1.2e+02 Score=9.58 Aligned_cols=20 Identities=25% Similarity=0.667 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 03401679999999986221
Q gi|254780679|r 33 LKYFPRNIYKIFSNIYQQKH 52 (129)
Q Consensus 33 lkyfprniykifsniyqqkh 52 (129)
..+|-..++++|.++|+.-+
T Consensus 79 ~~~f~~~l~~~f~~~y~~~~ 98 (144)
T d1szaa_ 79 TIYFSRNLFNLYKRTYLLVD 98 (144)
T ss_dssp HHHHHTTHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999998299
No 8
>d2fmla1 a.4.5.68 (A:205-268) Hypothetical protein EF2700, C-terminal domain {Enterococcus faecalis [TaxId: 1351]}
Probab=3.34 E-value=1.2e+02 Score=9.58 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHCCCCCCCCCCCC
Q ss_conf 167999999998622120346665422-210356865578721
Q gi|254780679|r 37 PRNIYKIFSNIYQQKHNTASFHRASLQ-KKDIGATPTKKGNSS 78 (129)
Q Consensus 37 prniykifsniyqqkhntasfhraslq-kkdigatptkkgnss 78 (129)
.|.+|.+|-..--.+-....|.++..+ -+++|..+++-|..+
T Consensus 16 AR~Vya~Fl~~~~~~IDnSNFkKth~~lf~evG~~~~~~GRP~ 58 (64)
T d2fmla1 16 ARKVFAKFLGVDYRSIDHSNFKKAMTQYFEELGERPVGIGRPS 58 (64)
T ss_dssp HHHHHHHHHTSCGGGSCHHHHHHHHGGGBCCCCC-------CC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999948880113422689999999999744778999986
No 9
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.92 E-value=1.4e+02 Score=9.16 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=10.1
Q ss_pred EEECCCCCCCCCC
Q ss_conf 2412678542764
Q gi|254780679|r 80 LISTNTNKDKKPR 92 (129)
Q Consensus 80 listntnkdkkpr 92 (129)
.+|-|..-||||-
T Consensus 96 ~lsGN~ctDKK~s 108 (117)
T d1dqaa1 96 AVSGNYCTDKKPA 108 (117)
T ss_dssp ESCCSSSCCSSCC
T ss_pred EEECCCCCCCHHH
T ss_conf 9855466653366
No 10
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.78 E-value=1.4e+02 Score=8.99 Aligned_cols=16 Identities=38% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9422299999999999
Q gi|254780679|r 1 MSYLNWFDLLTIMLLC 16 (129)
Q Consensus 1 msylnwfdlltimllc 16 (129)
+|||..-||+...+.|
T Consensus 27 ls~Ld~~dL~~~s~Vc 42 (118)
T d1p22a1 27 LSYLDAKSLCAAELVC 42 (118)
T ss_dssp HTTCCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHH
T ss_conf 9769999999999999
Done!