BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780679|ref|YP_003065092.1| hypothetical protein
CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040356|gb|ACT57152.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA
Sbjct: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
Query: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS
Sbjct: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
Query: 121 NPMQNNNDR 129
NPMQNNNDR
Sbjct: 121 NPMQNNNDR 129
>gi|315122210|ref|YP_004062699.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495612|gb|ADR52211.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 99
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIY----KIFSNIYQQKHNTAS 56
M +N FD+LTI++LCII T F H SL P N Y K FS IY+ + N +
Sbjct: 1 MLNVNVFDILTIVVLCIILTLNF----HYFWSLIRNPINSYKRIRKAFSEIYKSQRNISP 56
Query: 57 FHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQ 100
L KKD+ PT+K +S+ +T NK K P INL +K+
Sbjct: 57 NSSTPL-KKDLEIKPTRKKQTSK-DTTEENKKKHP-INLAMRKE 97
>gi|313214180|emb|CBY42676.1| unnamed protein product [Oikopleura dioica]
Length = 649
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 43/80 (53%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITK 108
++++N + ++ + ++ A + G ++ S+ T D +P+IN+++KKQ +
Sbjct: 28 EEENNVSDCSEEAISEDEVPAEESSIGGAAPQPSSGTAVDARPQINVQKKKQGWESSGDE 87
Query: 109 QKKNPIPLASRSNPMQNNND 128
+++ P++ +N N N+
Sbjct: 88 DEEDDAPVSEMANLKTNGNE 107
>gi|291088398|dbj|BAI82451.1| immidiate early protain [Human herpesvirus 2]
Length = 414
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 80 LISTNTNKDKKPRINLREKKQPQRK-----PITKQKKNPIPLASRSNPMQNNND 128
L+ T K K+PRINLR P R+ P + PI A P Q++ D
Sbjct: 111 LVDTPPRKSKRPRINLRLTSSPDRRAGVVFPEVWRNDRPIRAAQPQAPAQSSGD 164
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040356|gb|ACT57152.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA
Sbjct: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
Query: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS
Sbjct: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
Query: 121 NPMQNNNDR 129
NPMQNNNDR
Sbjct: 121 NPMQNNNDR 129
>gi|315122210|ref|YP_004062699.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495612|gb|ADR52211.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 99
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYK----IFSNIYQQKHNTAS 56
M +N FD+LTI++LCII T F H SL P N YK FS IY+ + N +
Sbjct: 1 MLNVNVFDILTIVVLCIILTLNF----HYFWSLIRNPINSYKRIRKAFSEIYKSQRNISP 56
Query: 57 FHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQ 100
L KKD+ PT+K +S+ +T NK K P INL +K+
Sbjct: 57 NSSTPL-KKDLEIKPTRKKQTSK-DTTEENKKKHP-INLAMRKE 97
>gi|332971134|gb|EGK10099.1| hypothetical protein HMPREF0476_0778 [Kingella kingae ATCC 23330]
Length = 707
Score = 37.0 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 42 KIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQP 101
K SN Q A S +K A ++K N+S + N +KP IN E+ +P
Sbjct: 29 KPASNSKTQTRPAAKNQNNSNTRKPAQAASSRKNNASSNNKSTANNARKPTINKPERSKP 88
Query: 102 -QRKPITKQKKNPIPLASR 119
KP T + P++++
Sbjct: 89 ASSKPTTNKPAASKPVSTK 107
>gi|157427928|ref|NP_001098871.1| SH2 domain-containing protein 2A [Bos taurus]
gi|157279250|gb|AAI53240.1| SH2D2A protein [Bos taurus]
gi|296489684|gb|DAA31797.1| SH2 domain-containing protein 2A [Bos taurus]
Length = 418
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 48 YQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPIT 107
+ K + F + + KK+ PT++ S + ++ + KP I + + QP+
Sbjct: 226 FGSKSQDSPFQYSPILKKERSIAPTQRDGSGEPKQSSQSPRPKPPIPAKPQLQPEVYTSP 285
Query: 108 KQKKNPIPLASRSNPMQNNND 128
+ P SNP+ N D
Sbjct: 286 APRPRPALPPKPSNPIYNEPD 306
>gi|110665592|gb|ABG81442.1| SH2 domain protein 2A [Bos taurus]
Length = 406
Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 48 YQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPIT 107
+ K + F + + KK+ PT++ S + ++ + KP I + + QP+
Sbjct: 214 FGSKSQDSPFQYSPILKKERSIAPTQRDGSGEPKQSSQSPRPKPPIPAKPQLQPEVYTSP 273
Query: 108 KQKKNPIPLASRSNPMQNNND 128
+ P SNP+ N D
Sbjct: 274 APRPRPALPPKPSNPIYNEPD 294
>gi|225734511|gb|ACO25279.1| serine/threonine protein kinase [Epizootic haematopoietic necrosis
virus]
Length = 907
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 45 SNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRK 104
S+ ++ + ++ +K +P +K + + + + K P +K P R
Sbjct: 191 SSPFRSHMRKSPARKSPARKSPARKSPARKSPARKSPARKSPARKSPARKSPARKSPARS 250
Query: 105 PITKQKKNPIPLASRS 120
P+ ++P+ +RS
Sbjct: 251 PVRSPVRSPVRSPARS 266
>gi|145521823|ref|XP_001446761.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414250|emb|CAK79364.1| unnamed protein product [Paramecium tetraurelia]
Length = 448
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQ---RKP 105
+++ N S K I P K+ +++++ + K R + Q RK
Sbjct: 349 KKQPNVVSNQHIPRPK--IPLAPVKQQQAAKILKEPQSHRPKERPVSAMRAQSPCSVRKS 406
Query: 106 I-TKQKKNPIPLASRSNPMQNNND 128
+ KQ +NP PL +SNP NND
Sbjct: 407 VDQKQNRNPSPLVRKSNPYIKNND 430
>gi|195435640|ref|XP_002065788.1| GK19479 [Drosophila willistoni]
gi|194161873|gb|EDW76774.1| GK19479 [Drosophila willistoni]
Length = 962
Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 50 QKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRIN--------LREKKQP 101
Q+H + +Q + + +Q+ +N +KP N KK+P
Sbjct: 9 QQHEASPTEGTPMQLPLPLPSNVEDHVKTQVNVSNEGNKRKPNANNQRKQLKTTETKKKP 68
Query: 102 QRKPITKQKKNP--------IPLASRSNPMQNNND 128
+RKPI + K P IP + P QN N+
Sbjct: 69 ERKPIRRGKAKPQENGKTNVIPKSPSGMPTQNANE 103
>gi|70917796|ref|XP_732977.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504346|emb|CAH82413.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 139
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLI--CSLKYFPRNIYKIFSNIY 48
+ + + +L I + ++ TC +I+H++ +L Y I++IF N +
Sbjct: 13 LPNVTKYMILIIFFVTLLITCNLLNIVHILLDWNLIYNKYQIWRIFFNFF 62
>gi|72152033|ref|XP_788454.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115747675|ref|XP_001190669.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 668
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 51 KHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQK 110
+ F + K+D P K+G + K K+P+ L E K+ +RK + KQ
Sbjct: 88 QKGGKPFPKQGHFKQDKQTKPWKEGQKGKEGGDEAEKTKRPK--LEELKKKERKQVRKQM 145
Query: 111 KNPIPLASRS 120
+ LA ++
Sbjct: 146 NSNFELAQKA 155
>gi|115744100|ref|XP_001197420.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115972899|ref|XP_001187726.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 668
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 51 KHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQK 110
+ F + K+D P K+G + K K+P+ L E K+ +RK + KQ
Sbjct: 88 QKGGKPFPKQGHFKQDKQTKPWKEGQKGKEGGDEAEKTKRPK--LEELKKKERKQVRKQM 145
Query: 111 KNPIPLASRS 120
+ LA ++
Sbjct: 146 NSNFELAQKA 155
>gi|83317335|ref|XP_731117.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23491050|gb|EAA22682.1| unknown protein [Plasmodium yoelii yoelii]
Length = 261
Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLI--CSLKYFPRNIYKIFSNIY 48
+ + + ++ I L+ ++ TC +++H++ +L Y I++IF N +
Sbjct: 13 LPNVTKYMIIIIFLVTLLITCNLLNVVHILLDWNLIYNKYQIWRIFFNFF 62
>gi|68073215|ref|XP_678522.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499017|emb|CAH99029.1| conserved hypothetical protein [Plasmodium berghei]
Length = 261
Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLI--CSLKYFPRNIYKIFSNIY 48
+ + + ++ I L+ ++ TC +++H++ +L Y I++IF N +
Sbjct: 13 LPNVTKYMIIIIFLVTLLITCNLLNVVHILLDWNLIYNKYQIWRIFFNFF 62
>gi|169825276|ref|YP_001692887.1| hypothetical protein FMG_1579 [Finegoldia magna ATCC 29328]
gi|167832081|dbj|BAG08997.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length = 1941
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITK 108
+++ + +KK++ +K N + N +K+P N +KK + +P +
Sbjct: 1828 KKQEKENPEKKNP-EKKNLEKKNPEKKNLEKENPKKENSEKQPDKNTIDKKSEKSQPKNE 1886
Query: 109 QKKNPIPLASRSNPMQ 124
+ P + +SN ++
Sbjct: 1887 KTTTKTPNSDQSNRVE 1902
>gi|313221012|emb|CBY31844.1| unnamed protein product [Oikopleura dioica]
Length = 222
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 44/86 (51%)
Query: 43 IFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQ 102
S ++++N + ++ + ++ A + G ++ S+ T D +P+IN+++KKQ
Sbjct: 22 AASEKKEEENNVSDCSEDAISEDEVQAEESSIGGAAPQPSSGTAVDARPQINVQKKKQGW 81
Query: 103 RKPITKQKKNPIPLASRSNPMQNNND 128
+ +++ P++ +N N N+
Sbjct: 82 ESSGDEDEEDDAPVSEMANLKTNGNE 107
>gi|327354107|gb|EGE82964.1| cell wall proline rich protein [Ajellomyces dermatitidis ATCC
18188]
Length = 885
Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 33 LKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPR 92
LK Y F+NI K +AS + PT S KKP+
Sbjct: 323 LKKNIIEGYNKFTNISMSKKGSASLPK---------LEPTASSQDRPRTSPERKPSKKPK 373
Query: 93 -------INLREKKQPQRKPITKQKKNPIPLASRSN 121
I R+ K+ +KP++++ P P+ SR+N
Sbjct: 374 KVRSWAGILTRKAKKRSKKPLSRKAPTPPPILSRTN 409
>gi|261189255|ref|XP_002621039.1| cell wall proline rich protein [Ajellomyces dermatitidis SLH14081]
gi|239591824|gb|EEQ74405.1| cell wall proline rich protein [Ajellomyces dermatitidis SLH14081]
Length = 884
Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 33 LKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPR 92
LK Y F+NI K +AS + PT S KKP+
Sbjct: 322 LKKNIIEGYNKFTNISMSKKGSASLPK---------LEPTASSQDRPRTSPERKPSKKPK 372
Query: 93 -------INLREKKQPQRKPITKQKKNPIPLASRSN 121
I R+ K+ +KP++++ P P+ SR+N
Sbjct: 373 KVRSWAGILTRKAKKRSKKPLSRKAPTPPPILSRTN 408
>gi|124185|sp|P14379|IE68_HHV2 RecName: Full=Immediate-early protein IE4; AltName: Full=IE68
gi|555152|gb|AAA45848.1| immediate early protein 4 [Human herpesvirus 2]
Length = 197
Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 80 LISTNTNKDKKPRINLREKKQPQRK-----PITKQKKNPIPLASRSNPMQNNNDR 129
L+ T K K+PRINLR P R+ P + PI A P Q++ DR
Sbjct: 111 LVDTPPRKSKRPRINLRLTSSPDRRAGVVFPEVWRSDRPIRAAQPQAPAQSSGDR 165
>gi|331247078|ref|XP_003336169.1| hypothetical protein PGTG_17487 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309315159|gb|EFP91750.1| hypothetical protein PGTG_17487 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1349
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 27 LHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTN 86
+HLI +K P + FS + T +Q D P+ + +T N
Sbjct: 146 IHLIDQIKNTPTTFFNPFSA-ESPQSQTQPTSSEPIQNND-NHHPSILASPHPHRTTTEN 203
Query: 87 KDKKPRINLREKKQ----PQRKPITKQKKNP 113
K+K+P+ N+ + PQ I+ + NP
Sbjct: 204 KEKQPKSNVGLRINSSFPPQELAISTGQANP 234
>gi|291088398|dbj|BAI82451.1| immidiate early protain [Human herpesvirus 2]
Length = 414
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 80 LISTNTNKDKKPRINLREKKQPQRK-----PITKQKKNPIPLASRSNPMQNNND 128
L+ T K K+PRINLR P R+ P + PI A P Q++ D
Sbjct: 111 LVDTPPRKSKRPRINLRLTSSPDRRAGVVFPEVWRNDRPIRAAQPQAPAQSSGD 164
>gi|239614743|gb|EEQ91730.1| cell wall proline rich protein [Ajellomyces dermatitidis ER-3]
Length = 884
Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 33 LKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPR 92
LK Y F+NI + + ASL K PT S KKP+
Sbjct: 322 LKKNIIEGYNKFTNI-----SISKKGSASLPK----LEPTASSQDRPRTSPERKPSKKPK 372
Query: 93 -------INLREKKQPQRKPITKQKKNPIPLASRSN 121
I R+ K+ +KP++++ P P+ SR+N
Sbjct: 373 KVRSWAGILTRKAKKRSKKPLSRKAPTPPPILSRTN 408
>gi|146180786|ref|XP_001021487.2| IBR domain containing protein [Tetrahymena thermophila]
gi|146144354|gb|EAS01242.2| IBR domain containing protein [Tetrahymena thermophila SB210]
Length = 763
Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 41 YKIFSNIYQQKH----NTASFHRAS--LQKKDIGATPTKKGNSSQLISTNTNKDKKPRIN 94
Y FS+ Q+ N F ++ L K+ G P N+S+ T +N+ K N
Sbjct: 628 YPAFSHFSPQRSAVNINIPRFSQSPQKLTIKNFGQKPVPIENNSENKETESNQKKNQSPN 687
Query: 95 LREKKQPQRKP 105
+ +KK+ +R+P
Sbjct: 688 IIQKKRERRRP 698
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.316 0.129 0.360
Lambda K H
0.267 0.0390 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,191,109,326
Number of Sequences: 14124377
Number of extensions: 76805986
Number of successful extensions: 378886
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 378404
Number of HSP's gapped (non-prelim): 637
length of query: 129
length of database: 4,842,793,630
effective HSP length: 95
effective length of query: 34
effective length of database: 3,500,977,815
effective search space: 119033245710
effective search space used: 119033245710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.6 bits)