BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780679|ref|YP_003065092.1| hypothetical protein
CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040356|gb|ACT57152.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA
Sbjct: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
Query: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS
Sbjct: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
Query: 121 NPMQNNNDR 129
NPMQNNNDR
Sbjct: 121 NPMQNNNDR 129
>gi|315122210|ref|YP_004062699.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495612|gb|ADR52211.1| hypothetical protein CKC_02300 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 99
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 1 MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRA 60
M +N FD+LTI++LCII T F LI + + I K FS IY+ + N +
Sbjct: 1 MLNVNVFDILTIVVLCIILTLNFHYFWSLIRNPINSYKRIRKAFSEIYKSQRNISPNSST 60
Query: 61 SLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQ 100
L KKD+ PT+K +S+ +T NK K P INL +K+
Sbjct: 61 PL-KKDLEIKPTRKKQTSK-DTTEENKKKHP-INLAMRKE 97
>gi|153803852|gb|AAW55994.2| DNA polymerase [Myodes glareolus rhadinovirus 1]
Length = 749
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 14 LLCIIFTCTFKSIL--HLICSLKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATP 71
+L + F + SI+ H +C Y P NI ++SN+ + ++T FH +S + P
Sbjct: 576 ILVVDFASLYPSIIQAHNLCYSTYIPSNILPLYSNLTPEDYDT--FHLSSGTVHFV--KP 631
Query: 72 TKKGN-SSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRS 120
KK + S L++ NK K + L P++K I +++N I + S
Sbjct: 632 HKKESLLSILLTKWLNKRKSLKNRLATCTDPKQKTILDKQQNAIKVTCNS 681
>gi|124185|sp|P14379|IE68_HHV2 RecName: Full=Immediate-early protein IE4; AltName: Full=IE68
gi|555152|gb|AAA45848.1| immediate early protein 4 [Human herpesvirus 2]
Length = 197
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 80 LISTNTNKDKKPRINLREKKQPQRK-----PITKQKKNPIPLASRSNPMQNNNDR 129
L+ T K K+PRINLR P R+ P + PI A P Q++ DR
Sbjct: 111 LVDTPPRKSKRPRINLRLTSSPDRRAGVVFPEVWRSDRPIRAAQPQAPAQSSGDR 165
>gi|149239014|ref|XP_001525383.1| predicted protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146450876|gb|EDK45132.1| predicted protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 544
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 52 HNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKP-RINLREKKQPQRKPITKQK 110
H + + R + + D ++ T KG S ++ TN+ K P + N +E Q +RK I++++
Sbjct: 441 HKSTAKSRLAREIHDKPSSMTNKGVSDKVALTNSTKTSLPVKFNDKENLQVRRKIISRKR 500
Query: 111 KNPIPLAS 118
P PL++
Sbjct: 501 LAPKPLSA 508
>gi|19113759|ref|NP_592847.1| chitin synthase regulatory factor Chr3 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351653|sp|Q09897|CHR3_SCHPO RecName: Full=Chitin synthase regulatory factor 3; AltName:
Full=Chs four homolog 1
gi|1061298|emb|CAA91775.1| chitin synthase regulatory factor Chr3 (predicted)
[Schizosaccharomyces pombe]
Length = 932
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 32 SLKYFPRNIYKIFSN--IYQQKHNTAS---FHRASLQKKDIGATPT-----KKGNSSQLI 81
+L++ P + Y S+ +Y + +S +RAS+ +G P+ KK S ++
Sbjct: 45 TLQFRPTSRYPTLSHEPVYTNVLDLSSRIDANRASIMSATMGTPPSALKFSKKKISRPVV 104
Query: 82 STNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASR 119
S +T KDK PR + K +PQ P K P P + R
Sbjct: 105 SEDTFKDKLPRATIPVKPEPQ--PQYKIPAAPAPTSKR 140
>gi|156542072|ref|XP_001602204.1| PREDICTED: similar to LOC553328 protein [Nasonia vitripennis]
Length = 653
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 23 FKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLIS 82
+K ++HL+ K I K F + K +T + R +++ + A P K+ + +
Sbjct: 99 YKRLMHLLSQSKVLSSFIMKKFEPKDKDK-DTKAPKRTGIEEAE-SAVPNKRTRRALKQT 156
Query: 83 TNTNKDK------KPRINLREKKQPQRKPITKQKKNPIPLASRSNPMQN 125
NT+K+K + ++NL KK + +K K+ P SNP+ N
Sbjct: 157 ENTDKNKAKSRRGRKKLNLNIKKAEAEELASKCKEEPSGDKENSNPIDN 205
>gi|313214180|emb|CBY42676.1| unnamed protein product [Oikopleura dioica]
Length = 649
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 43/80 (53%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITK 108
++++N + ++ + ++ A + G ++ S+ T D +P+IN+++KKQ +
Sbjct: 28 EEENNVSDCSEEAISEDEVPAEESSIGGAAPQPSSGTAVDARPQINVQKKKQGWESSGDE 87
Query: 109 QKKNPIPLASRSNPMQNNND 128
+++ P++ +N N N+
Sbjct: 88 DEEDDAPVSEMANLKTNGNE 107
>gi|118396898|ref|XP_001030785.1| hypothetical protein TTHERM_01014390 [Tetrahymena thermophila]
gi|89285100|gb|EAR83122.1| hypothetical protein TTHERM_01014390 [Tetrahymena thermophila
SB210]
Length = 1218
Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 59 RASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLAS 118
+ +QKKD+ TP KK S+L S ++D + IN K+ K ++ +K NP +S
Sbjct: 705 KQQIQKKDLCKTPLKKNRQSKLPS-QKHQDDQSSINKIVSKKSTEKDVSSKKDNPNNQSS 763
Query: 119 RSNPMQNNNDR 129
S N N +
Sbjct: 764 ASILTYNKNGK 774
>gi|313221012|emb|CBY31844.1| unnamed protein product [Oikopleura dioica]
Length = 222
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 43/80 (53%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITK 108
++++N + ++ + ++ A + G ++ S+ T D +P+IN+++KKQ +
Sbjct: 28 EEENNVSDCSEDAISEDEVQAEESSIGGAAPQPSSGTAVDARPQINVQKKKQGWESSGDE 87
Query: 109 QKKNPIPLASRSNPMQNNND 128
+++ P++ +N N N+
Sbjct: 88 DEEDDAPVSEMANLKTNGNE 107
>gi|291088398|dbj|BAI82451.1| immidiate early protain [Human herpesvirus 2]
Length = 414
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 80 LISTNTNKDKKPRINLREKKQPQRK-----PITKQKKNPIPLASRSNPMQNNND 128
L+ T K K+PRINLR P R+ P + PI A P Q++ D
Sbjct: 111 LVDTPPRKSKRPRINLRLTSSPDRRAGVVFPEVWRNDRPIRAAQPQAPAQSSGD 164
>gi|68490671|ref|XP_710858.1| potential zinc finger protein [Candida albicans SC5314]
gi|46432111|gb|EAK91614.1| potential zinc finger protein [Candida albicans SC5314]
Length = 476
Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKG--NSSQLISTNTNKDKKPRINLREKKQPQRKPI 106
Q+ H + +HR +L+++ P + NS TNT + K+ ++ +E+++ +++ I
Sbjct: 91 QRSHMKSEWHRYNLKRRVAQLPPITEDLFNSKVSTLTNTEETKQKQLTKKEQRRKEKEAI 150
Query: 107 TKQKKNPIPLASRS--NPMQNN 126
+QK+ + A ++ MQ N
Sbjct: 151 LEQKRQILEQAKKAMLAKMQEN 172
>gi|213407344|ref|XP_002174443.1| 50S ribosomal protein L1 [Schizosaccharomyces japonicus yFS275]
gi|212002490|gb|EEB08150.1| 50S ribosomal protein L1 [Schizosaccharomyces japonicus yFS275]
Length = 240
Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 37 PRNIYKIFSNIYQQKHNTASFHRASLQKKDIGATP--TKKGNSSQLISTNTNKDKKPRIN 94
PRN+ + KH TAS SL K G TP +KG SQ+I + D+K N
Sbjct: 146 PRNL------MPSVKHGTASNDIISLVKTFKGTTPFRERKGMISQVIGPQSYSDEKLAAN 199
Query: 95 LREKKQPQRKPITK--QKKNP 113
L+ RK I+K QK+ P
Sbjct: 200 LKAILAGIRKCISKMEQKRKP 220
>gi|241948849|ref|XP_002417147.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223640485|emb|CAX44737.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 401
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKG--NSSQLISTNTNKDKKPRINLREKKQPQRKPI 106
Q+ H + +HR +L+++ P + NS TNT + K+ ++ +E+++ +++ I
Sbjct: 31 QRSHMKSDWHRYNLKRRVAQLPPITEDLFNSKVSTLTNTEETKQKQLTKKEQRRKEKEAI 90
Query: 107 TKQKKNPIPLASRS 120
+QK+ + A R+
Sbjct: 91 LEQKRQILEQAKRA 104
>gi|84999042|ref|XP_954242.1| sir2-like histone deacetylase [Theileria annulata]
gi|65305240|emb|CAI73565.1| sir2-like histone deacetylase, putative [Theileria annulata]
Length = 928
Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 82 STNTNKDKKPRINLREKKQPQRKPITKQKKNPIPLASRSNPMQNN 126
+TNT DK N REK+ Q P+TK KK S P NN
Sbjct: 79 NTNTKHDKAKDTNCREKQNEQYGPLTKSKKRRKLTDSACIPSMNN 123
>gi|68490646|ref|XP_710870.1| potential zinc finger protein [Candida albicans SC5314]
gi|46432125|gb|EAK91627.1| potential zinc finger protein [Candida albicans SC5314]
Length = 475
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 49 QQKHNTASFHRASLQKKDIGATPTKKG--NSSQLISTNTNKDKKPRINLREKKQPQRKPI 106
Q+ H + +HR +L+++ P + NS TNT + K+ ++ +E+++ +++ I
Sbjct: 91 QRSHMKSEWHRYNLKRRVAQLPPITEDLFNSKVSTLTNTEETKQKQLTKKEQRRKEKEAI 150
Query: 107 TKQKKNPIPLASRS 120
+QK+ + A ++
Sbjct: 151 LEQKRQILEQAKKA 164
>gi|322836633|ref|YP_004209942.1| conjugal transfer protein [Yersinia pestis Java 9]
gi|321161166|gb|ADW66875.1| conjugal transfer protein [Yersinia pestis Java 9]
Length = 372
Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 42 KIFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQP 101
KI+ N Y ++ TAS +A +G T G + ++ T D P+ + P
Sbjct: 57 KIYKNFYAEEPQTASTTKADDNASQVGKVRTGMGQNFDPVANETTSDSVPQDAGNKTGSP 116
Query: 102 QRKPITK-QKKNPIPLASRS 120
+ T+ QK IP++ +S
Sbjct: 117 DKPVATQFQKYLSIPVSGQS 136
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.320 0.132 0.393
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,186,549,910
Number of Sequences: 14124377
Number of extensions: 44081205
Number of successful extensions: 183333
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 183173
Number of HSP's gapped (non-prelim): 207
length of query: 129
length of database: 4,842,793,630
effective HSP length: 95
effective length of query: 34
effective length of database: 3,500,977,815
effective search space: 119033245710
effective search space used: 119033245710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)