RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780679|ref|YP_003065092.1| hypothetical protein
CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP-
           binding, diabetes mellitus, disease mutation,
           glycolysis, nucleotide-binding, polymorphism; HET: GLC
           MRK; 1.50A {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A*
           3goi_A* 3imx_A* 3h1v_X* 1v4t_A* (A:72-209,A:448-470)
          Length = 161

 Score = 25.7 bits (56), Expect = 2.3
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 92  RINLREKKQPQRKPITKQKKNPIP 115
            + + E ++ Q    TK +   IP
Sbjct: 22  LVKVGEGEEGQWSVKTKHQMYSIP 45


>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel,
           cotranslational protein translocation, protein
           conducting channel; 6.48A {Triticum aestivum} PDB:
           2wwa_H 2ww9_H 1s1i_D (H:139-362)
          Length = 224

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 95  LREKKQPQRKPITKQKKNPI 114
           +R   Q  +K     KKNP+
Sbjct: 161 IRPAGQATQKRTHVLKKNPL 180


>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
           multi-protein complex, DNA- binding, magnesium; 3.65A
           {Schizosaccharomyces pombe} (B:756-789,B:840-964)
          Length = 159

 Score = 24.1 bits (52), Expect = 6.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 80  LISTNTNKDKKPRINLREKKQPQ 102
           +++TN    K  ++ +R  + PQ
Sbjct: 137 MVTTNQEGLKFVKVRMRSTRIPQ 159


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 854,388
Number of extensions: 30968
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 10
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)