RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780679|ref|YP_003065092.1| hypothetical protein
CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
           sensor, voltage dependent, ION channel, shaker, membrane
           protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           2a79_B*
          Length = 514

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 10/61 (16%), Positives = 21/61 (34%)

Query: 2   SYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRAS 61
           + +N  D++ I+   +    T  +   L          I++I   +   K +  S     
Sbjct: 272 NIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQI 331

Query: 62  L 62
           L
Sbjct: 332 L 332


>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton
          transfer, proton pumping, membrane protein, cell inner
          membrane, cell membrane, copper; HET: HEA LDA LMT;
          2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B*
          1qle_B*
          Length = 298

 Score = 25.8 bits (56), Expect = 3.1
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1  MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRN 39
               W D   + ++  +    F  +L LIC +++  R 
Sbjct: 57 AHDQQWLDHFVLYIITAVT--IFVCLLLLICIVRFNRRA 93


>3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP- binding,
           diabetes mellitus, disease mutation, glycolysis,
           nucleotide-binding, polymorphism; HET: GLC MRK; 1.50A
           {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A*
           3imx_A* 3h1v_X* 1v4t_A*
          Length = 470

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 92  RINLREKKQPQRKPITKQKKNPIP 115
            + + E ++ Q    TK +   IP
Sbjct: 93  LVKVGEGEEGQWSVKTKHQMYSIP 116


>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex,
          oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
          sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B*
          3fye_B* 3fyi_B* 1m56_B* 1m57_B*
          Length = 262

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 4/52 (7%)

Query: 1  MSYLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKH 52
           + ++W D   ++++  I       +  LI    +            +    
Sbjct: 26 ATQIHWLDGFILVIIAAITIF----VTLLILYAVWRFHEKRNKVPARFTHNS 73


>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel,
           cotranslational protein translocation, protein
           conducting channel; 6.48A {Triticum aestivum} PDB:
           2wwa_H 2ww9_H 1s1i_D
          Length = 362

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 95  LREKKQPQRKPITKQKKNPI 114
           +R   Q  +K     KKNP+
Sbjct: 299 IRPAGQATQKRTHVLKKNPL 318


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 988,409
Number of extensions: 37269
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 11
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)