HHsearch alignment for GI: 254780680 and conserved domain: COG0016

>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=97.99  E-value=0.00022  Score=53.36  Aligned_cols=186  Identities=19%  Similarity=0.269  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--CEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             99999986223203202123562027889865514224-----7677643100--0231345411454453420595550
Q gi|254780680|r  178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--RWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
T Consensus       116 ~~e~i~~iF-~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~---  191 (335)
T COG0016         116 TIEEIEDIF-LGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI---  191 (335)
T ss_pred             HHHHHHHHH-HHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCC---
T ss_conf             999999999-9749666458821320225243249999984124443787688773002366827659999847999---


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CHHHHCCCCCH
Q ss_conf             4208853221078843355434321222210200212127865014578989999999999841-----06753037801
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLD-----LHYRVVSLCTG  325 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~-----lpyRvv~~~sg  325 (430)
T Consensus       192 P~k~~~~grvyR~D~~Da---TH----s~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~fg~~~~vRfrpsyFPFT  260 (335)
T COG0016         192 PIKIFSPGRVYRNDTVDA---TH----SPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFFGEDVKVRFRPSYFPFT  260 (335)
T ss_pred             CCEEECCCCEECCCCCCC---CC----CHHEEEEEEEEEECCCC----HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             915845663411788776---42----61013367899958956----99999999999999637776357606878989


Q ss_pred             HCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf             17844340241011010048332375310210076453268473389984101042004322899999
Q gi|254780680|r  326 DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL  393 (430)
Q Consensus       326 dlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l  393 (430)
T Consensus       261 EP------S~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~~~-~~GfAf-----GlGlERlA  313 (335)
T COG0016         261 EP------SAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DPEE-YSGFAF-----GLGLERLA  313 (335)
T ss_pred             CC------EEEEEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHH
T ss_conf             97------178999976878689983565457888974599---9876-058887-----40488999