HHsearch alignment for GI: 254780680 and conserved domain: COG0016
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=97.99 E-value=0.00022 Score=53.36 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--CEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 99999986223203202123562027889865514224-----7677643100--0231345411454453420595550
Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--RWLIPTSEVSLTNLYSHEIIESKSL 250 (430)
Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430)
T Consensus 116 ~~e~i~~iF-~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~--- 191 (335)
T COG0016 116 TIEEIEDIF-LGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI--- 191 (335)
T ss_pred HHHHHHHHH-HHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCC---
T ss_conf 999999999-9749666458821320225243249999984124443787688773002366827659999847999---
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CHHHHCCCCCH
Q ss_conf 4208853221078843355434321222210200212127865014578989999999999841-----06753037801
Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLD-----LHYRVVSLCTG 325 (430)
Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~-----lpyRvv~~~sg 325 (430)
T Consensus 192 P~k~~~~grvyR~D~~Da---TH----s~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~fg~~~~vRfrpsyFPFT 260 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDA---TH----SPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFFGEDVKVRFRPSYFPFT 260 (335)
T ss_pred CCEEECCCCEECCCCCCC---CC----CHHEEEEEEEEEECCCC----HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 915845663411788776---42----61013367899958956----99999999999999637776357606878989
Q ss_pred HCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 17844340241011010048332375310210076453268473389984101042004322899999
Q gi|254780680|r 326 DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL 393 (430)
Q Consensus 326 dlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l 393 (430)
T Consensus 261 EP------S~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~~~-~~GfAf-----GlGlERlA 313 (335)
T COG0016 261 EP------SAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DPEE-YSGFAF-----GLGLERLA 313 (335)
T ss_pred CC------EEEEEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHH
T ss_conf 97------178999976878689983565457888974599---9876-058887-----40488999