HHsearch alignment for GI: 254780680 and conserved domain: COG0017
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=96.54 E-value=0.0032 Score=44.70 Aligned_cols=139 Identities=20% Similarity=0.337 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCHHHHCC--CCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH
Q ss_conf 66566621122022117--3100011222167530105648899999999999862232032021235620278898655
Q gi|254780680|r 133 SAIHLSREHFEIGEALG--LMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG 210 (430)
Q Consensus 133 ~f~f~~k~H~elge~l~--liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG 210 (430)
T Consensus 103 ~~Pi~~~~~~~~e~lld~rhL~lR~~----------~~~Av~kirs~i~~a~~ef-f~~~gF~eV~tP~i~~~~~EGg~e 171 (435)
T COG0017 103 PYPIDKKEHSELETLLDNRHLDLRTP----------KIQAVFKIRSSILRAIREF-FYENGFTEVHTPIITASATEGGGE 171 (435)
T ss_pred CCCCCCCCCCCHHHHHHCHHEECCCC----------CHHHHHHHHHHHHHHHHHH-HHHCCCEEECCCEEECCCCCCCCE
T ss_conf 77768645557888874403020462----------0377894999999999999-975895896594685347899850
Q ss_pred HCH--HHHHHHHHHHH-CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE-
Q ss_conf 142--24767764310-00231345411454453420595550420885322107884335543432122221020021-
Q gi|254780680|r 211 QIP--KFADDMFCTTD-GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL- 286 (430)
Q Consensus 211 ~lp--~f~~~~y~~~d-~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~- 286 (430)
T Consensus 172 lF~v~yf~~~a~LtqS~QLyk----e~~~~a-----------l-~rVf~igP~FRAE~s----~T~R--HL~EF~~ld~E 229 (435)
T COG0017 172 LFKVDYFDKEAYLTQSPQLYK----EALAAA-----------L-ERVFTIGPTFRAEKS----NTRR--HLSEFWMLDPE 229 (435)
T ss_pred EEEEEECCCCEEEECCHHHHH----HHHHHH-----------H-CCEEEECCCEECCCC----CCCC--HHHHHHEECCE
T ss_conf 577750685667714788999----999998-----------5-764895672554778----9700--36667330211
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 212786501457898999
Q gi|254780680|r 287 VSITREEDSFTEHERMLS 304 (430)
Q Consensus 287 ~~~~~pe~S~~~~e~~~~ 304 (430)
T Consensus 230 maf~~~~d~m~l~E~~i~ 247 (435)
T COG0017 230 MAFADLNDVMDLAEELIK 247 (435)
T ss_pred ECCCCHHHHHHHHHHHHH
T ss_conf 136768889999999999