HHsearch alignment for GI: 254780680 and conserved domain: COG0017

>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=96.54  E-value=0.0032  Score=44.70  Aligned_cols=139  Identities=20%  Similarity=0.337  Sum_probs=76.4

Q ss_pred             CCCCCCCCCCCHHHHCC--CCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH
Q ss_conf             66566621122022117--3100011222167530105648899999999999862232032021235620278898655
Q gi|254780680|r  133 SAIHLSREHFEIGEALG--LMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG  210 (430)
Q Consensus       133 ~f~f~~k~H~elge~l~--liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG  210 (430)
T Consensus       103 ~~Pi~~~~~~~~e~lld~rhL~lR~~----------~~~Av~kirs~i~~a~~ef-f~~~gF~eV~tP~i~~~~~EGg~e  171 (435)
T COG0017         103 PYPIDKKEHSELETLLDNRHLDLRTP----------KIQAVFKIRSSILRAIREF-FYENGFTEVHTPIITASATEGGGE  171 (435)
T ss_pred             CCCCCCCCCCCHHHHHHCHHEECCCC----------CHHHHHHHHHHHHHHHHHH-HHHCCCEEECCCEEECCCCCCCCE
T ss_conf             77768645557888874403020462----------0377894999999999999-975895896594685347899850


Q ss_pred             HCH--HHHHHHHHHHH-CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE-
Q ss_conf             142--24767764310-00231345411454453420595550420885322107884335543432122221020021-
Q gi|254780680|r  211 QIP--KFADDMFCTTD-GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL-  286 (430)
Q Consensus       211 ~lp--~f~~~~y~~~d-~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~-  286 (430)
T Consensus       172 lF~v~yf~~~a~LtqS~QLyk----e~~~~a-----------l-~rVf~igP~FRAE~s----~T~R--HL~EF~~ld~E  229 (435)
T COG0017         172 LFKVDYFDKEAYLTQSPQLYK----EALAAA-----------L-ERVFTIGPTFRAEKS----NTRR--HLSEFWMLDPE  229 (435)
T ss_pred             EEEEEECCCCEEEECCHHHHH----HHHHHH-----------H-CCEEEECCCEECCCC----CCCC--HHHHHHEECCE
T ss_conf             577750685667714788999----999998-----------5-764895672554778----9700--36667330211


Q ss_pred             EECCCCCCHHHHHHHHHH
Q ss_conf             212786501457898999
Q gi|254780680|r  287 VSITREEDSFTEHERMLS  304 (430)
Q Consensus       287 ~~~~~pe~S~~~~e~~~~  304 (430)
T Consensus       230 maf~~~~d~m~l~E~~i~  247 (435)
T COG0017         230 MAFADLNDVMDLAEELIK  247 (435)
T ss_pred             ECCCCHHHHHHHHHHHHH
T ss_conf             136768889999999999