HHsearch alignment for GI: 254780680 and conserved domain: COG0423
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=99.04 E-value=5.1e-09 Score=87.74 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=174.2
Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHCCHHHHHHHHHCHHHHHHH---------HH----HHH---
Q ss_conf 7530105648899999999999862232-032021235620278898655142247677---------64----310---
Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSE-HGYTEVSAPLLVRDEAMYGTGQIPKFADDM---------FC----TTD--- 224 (430)
Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~-~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~---------y~----~~d--- 224 (430)
T Consensus 30 ~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l~ 109 (558)
T COG0423 30 AGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYLG 109 (558)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 46532577518999999999999866246876784255448688864347613465620434624534533688898764
Q ss_pred -C-C-----------------------------------E--ECCCCCC------------HHHHHHHHHCCCHHHHCCE
Q ss_conf -0-0-----------------------------------2--3134541------------1454453420595550420
Q gi|254780680|r 225 -G-R-----------------------------------W--LIPTSEV------------SLTNLYSHEIIESKSLPLR 253 (430)
Q Consensus 225 -~-l-----------------------------------~--Li~TaEv------------pL~~~~~~~~l~~~~LPik 253 (430)
T Consensus 110 ~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFg 189 (558)
T COG0423 110 KDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFG 189 (558)
T ss_pred HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 10345578788888888617758876886687503446667314577886324565100212153699999753689848
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC-------------------H--HH----------HHH--
Q ss_conf 88532210788433554343212222102002121278650-------------------1--45----------789--
Q gi|254780680|r 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED-------------------S--FT----------EHE-- 300 (430)
Q Consensus 254 ~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~-------------------S--~~----------~~e-- 300 (430)
T Consensus 190 iaQIGKsfRNEISPr----~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~ 265 (558)
T COG0423 190 IAQIGKSFRNEISPR----NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENE 265 (558)
T ss_pred EEEECHHHCCCCCCC----CCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCH
T ss_conf 886231014652766----5366512343120135887775568633333210024664777641003455441545044
Q ss_pred ---HHHHHHHHHHHHHCCH---HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC--------
Q ss_conf ---8999999999984106---75303780117844340241011010048332375310210076453268--------
Q gi|254780680|r 301 ---RMLSCAEEILKRLDLH---YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS-------- 366 (430)
Q Consensus 301 ---~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i-------- 366 (430)
T Consensus 266 ~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYDL~~H~k~s~~~l~v 344 (558)
T COG0423 266 TLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYDLSRHSKFSGEDLTV 344 (558)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCC-EEEEEEEECCCCCCHHHHHHHCCCCCEE
T ss_conf 389999999999998099989806652390877665440232799637886-6999986135544556565403666223
Q ss_pred --EE-----------------ECCCC---------------------C-------------------CCCEEEEECCCHH
Q ss_conf --47-----------------33899---------------------8-------------------4101042004322
Q gi|254780680|r 367 --RY-----------------RDPNS---------------------K-------------------SLKFTHTLNGSGV 387 (430)
Q Consensus 367 --ry-----------------~~~~~---------------------~-------------------~~~~~htlNgt~~ 387 (430)
T Consensus 345 ~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEP-Sf 423 (558)
T COG0423 345 FREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEP-SF 423 (558)
T ss_pred EECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEECCCCEECCCEECC-CC
T ss_conf 32147762233100146621038144556677765445666665304762135310010011002475506715656-77
Q ss_pred HHHHHHHHHHH-HCCCCCC-----CEECCCCCCCC
Q ss_conf 89999999988-3468998-----38658222310
Q gi|254780680|r 388 AVGRCLIAILE-NYLNADG-----SVTIPTVLRPY 416 (430)
Q Consensus 388 A~~R~l~ailE-n~q~~dg-----~i~iP~~L~py 416 (430)
T Consensus 424 GidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPi 458 (558)
T COG0423 424 GIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPI 458 (558)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCE
T ss_conf 71189999998762011356650599558655852