HHsearch alignment for GI: 254780680 and conserved domain: COG0423

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=99.04  E-value=5.1e-09  Score=87.74  Aligned_cols=249  Identities=18%  Similarity=0.306  Sum_probs=174.2

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHCCHHHHHHHHHCHHHHHHH---------HH----HHH---
Q ss_conf             7530105648899999999999862232-032021235620278898655142247677---------64----310---
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSE-HGYTEVSAPLLVRDEAMYGTGQIPKFADDM---------FC----TTD---  224 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~-~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~---------y~----~~d---  224 (430)
T Consensus        30 ~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l~  109 (558)
T COG0423          30 AGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYLG  109 (558)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             46532577518999999999999866246876784255448688864347613465620434624534533688898764


Q ss_pred             -C-C-----------------------------------E--ECCCCCC------------HHHHHHHHHCCCHHHHCCE
Q ss_conf             -0-0-----------------------------------2--3134541------------1454453420595550420
Q gi|254780680|r  225 -G-R-----------------------------------W--LIPTSEV------------SLTNLYSHEIIESKSLPLR  253 (430)
Q Consensus       225 -~-l-----------------------------------~--Li~TaEv------------pL~~~~~~~~l~~~~LPik  253 (430)
T Consensus       110 ~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFg  189 (558)
T COG0423         110 KDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFG  189 (558)
T ss_pred             HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             10345578788888888617758876886687503446667314577886324565100212153699999753689848


Q ss_pred             EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC-------------------H--HH----------HHH--
Q ss_conf             88532210788433554343212222102002121278650-------------------1--45----------789--
Q gi|254780680|r  254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED-------------------S--FT----------EHE--  300 (430)
Q Consensus       254 ~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~-------------------S--~~----------~~e--  300 (430)
T Consensus       190 iaQIGKsfRNEISPr----~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~  265 (558)
T COG0423         190 IAQIGKSFRNEISPR----NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENE  265 (558)
T ss_pred             EEEECHHHCCCCCCC----CCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCH
T ss_conf             886231014652766----5366512343120135887775568633333210024664777641003455441545044


Q ss_pred             ---HHHHHHHHHHHHHCCH---HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC--------
Q ss_conf             ---8999999999984106---75303780117844340241011010048332375310210076453268--------
Q gi|254780680|r  301 ---RMLSCAEEILKRLDLH---YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS--------  366 (430)
Q Consensus       301 ---~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i--------  366 (430)
T Consensus       266 ~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYDL~~H~k~s~~~l~v  344 (558)
T COG0423         266 TLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYDLSRHSKFSGEDLTV  344 (558)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCC-EEEEEEEECCCCCCHHHHHHHCCCCCEE
T ss_conf             389999999999998099989806652390877665440232799637886-6999986135544556565403666223


Q ss_pred             --EE-----------------ECCCC---------------------C-------------------CCCEEEEECCCHH
Q ss_conf             --47-----------------33899---------------------8-------------------4101042004322
Q gi|254780680|r  367 --RY-----------------RDPNS---------------------K-------------------SLKFTHTLNGSGV  387 (430)
Q Consensus       367 --ry-----------------~~~~~---------------------~-------------------~~~~~htlNgt~~  387 (430)
T Consensus       345 ~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEP-Sf  423 (558)
T COG0423         345 FREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEP-SF  423 (558)
T ss_pred             EECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEECCCCEECCCEECC-CC
T ss_conf             32147762233100146621038144556677765445666665304762135310010011002475506715656-77


Q ss_pred             HHHHHHHHHHH-HCCCCCC-----CEECCCCCCCC
Q ss_conf             89999999988-3468998-----38658222310
Q gi|254780680|r  388 AVGRCLIAILE-NYLNADG-----SVTIPTVLRPY  416 (430)
Q Consensus       388 A~~R~l~ailE-n~q~~dg-----~i~iP~~L~py  416 (430)
T Consensus       424 GidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPi  458 (558)
T COG0423         424 GIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPI  458 (558)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCE
T ss_conf             71189999998762011356650599558655852