HHsearch alignment for GI: 254780680 and conserved domain: PRK00960
>PRK00960 seryl-tRNA synthetase; Provisional.
Probab=99.59 E-value=3.8e-14 Score=125.88 Aligned_cols=281 Identities=21% Similarity=0.338 Sum_probs=213.5
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCH
Q ss_conf 42000156566566621122022117310001122216753010564889999999999986223203202123562027
Q gi|254780680|r 124 LIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRD 203 (430)
Q Consensus 124 ~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~ 203 (430)
T Consensus 181 iv~e-s~~re~~F~-~DPTeea~k~GWvK-----~f~gRGQW~y~P~~t~LFRafE~ii~Ee~i~~lGf~e~lFPKLipl 253 (516)
T PRK00960 181 IVSE-SAPREITFD-GDPTEEAEKLGWVK-----RFPGRGQWFYTPPMAKLFRAFEEIILEECIEKLGFDECLFPKLIPL 253 (516)
T ss_pred CCCC-CCCCCCCCC-CCHHHHHHHCCCHH-----CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
T ss_conf 1035-677433578-98279998626042-----1888874243775889999999999999743237610001345529
Q ss_pred HHHHHHHHCHHHHHHHHHHH----H-------CCEECCCCCCHH----------------------HHHHHHHCCCHHHH
Q ss_conf 88986551422476776431----0-------002313454114----------------------54453420595550
Q gi|254780680|r 204 EAMYGTGQIPKFADDMFCTT----D-------GRWLIPTSEVSL----------------------TNLYSHEIIESKSL 250 (430)
Q Consensus 204 ~~~~gtG~lp~f~~~~y~~~----d-------~l~Li~TaEvpL----------------------~~~~~~~~l~~~~L 250 (430)
T Consensus 254 evm~kmryleGlp~gmYYVCpPKRDPe~feef~~e~~i~~EiPi~~lKe~l~~P~yvlapAQCePFy~fl~~e~v~~d~l 333 (516)
T PRK00960 254 DVMYKMRYLEGLPEGMYYVCPPKRDPEMFEEFVNEMMIKKEIPIDLLKEKLRDPGYVLAPAQCEPFYQFLDHELVDVDEL 333 (516)
T ss_pred HHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCC
T ss_conf 99977330126998727866998986899999777334053668999986128861351024993788736772565558
Q ss_pred CCEEEEEE-CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCC-----
Q ss_conf 42088532-2107884335543432122221020021212786501457898999999999984106-7530378-----
Q gi|254780680|r 251 PLRFTTLA-PSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVSLC----- 323 (430)
Q Consensus 251 Pik~~~~s-~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~----- 323 (430)
T Consensus 334 Pik~FDrSGwtyRwE~GG----~~GleRV~EF~RiE~VW~gtpe~ve~~r~~~~~y~~~~ae~LdLE~w~ev~ddPfyle 409 (516)
T PRK00960 334 PIKFFDKSGWTYRWEGGG----AKGLDRVNEFLRIECVWMGTPEFVEEVRDDTLKYAHILAEKLDLEYWTEVGDDPFYLE 409 (516)
T ss_pred CEEEEECCCCEEEECCCC----CCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCHHHC
T ss_conf 657885588626404787----4323555010147778846889999998889999999887743244223056750322
Q ss_pred -----CHHCCCHHHEEEEEEEECCC---CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf -----01178443402410110100---4833237531021007645326847338998410104200432289999999
Q gi|254780680|r 324 -----TGDLGFSACKTYDLEVWLAG---QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430)
Q Consensus 324 -----sgdlg~~a~~~~DiE~w~P~---~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430)
T Consensus 410 gr~~e~r~iE~p~vp~ye~~~~LP~~~~e~k~v~v~s~nVhG~hf~eGF~V--K~~~g~~---~Wt-GCtG~GL~RWv~g 483 (516)
T PRK00960 410 GRKLEDRGIEFPDVPKYEMRLWLPHIKEERKGVAVTSANIHGTHFVEGFNV--KDYKGRK---LWT-GCTGVGLTRWVIG 483 (516)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCC--EECCCCE---EEC-CCCCCCHHHHHHH
T ss_conf 565445564368888546799657647767726888863147535676522--0035873---113-7764457899999
Q ss_pred HHHHCCC-CCCCEECCCCCCCCCCCEEEEC
Q ss_conf 9883468-9983865822231018801307
Q gi|254780680|r 396 ILENYLN-ADGSVTIPTVLRPYMNNLAVIK 424 (430)
Q Consensus 396 ilEn~q~-~dg~i~iP~~L~pym~g~~~i~ 424 (430)
T Consensus 484 FLAQ~Gfd~~~---WPe~i~~rvge~pe~~ 510 (516)
T PRK00960 484 FLAQKGFDPDN---WPEEIRKRVGELPEIP 510 (516)
T ss_pred HHHHCCCCCCC---CCHHHHHHHHCCCCCC
T ss_conf 99870798121---6499998862567665