HHsearch alignment for GI: 254780680 and conserved domain: PRK03991
>PRK03991 threonyl-tRNA synthetase; Validated.
Probab=99.85 E-value=3.6e-21 Score=178.03 Aligned_cols=277 Identities=21% Similarity=0.261 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH
Q ss_conf 15656656662112202211731000112221675301056488999999999998622320320212356202788986
Q gi|254780680|r 129 GKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430)
Q Consensus 129 G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430)
T Consensus 188 ~~~~~~~~e-pphv~~mr~~~~~dyEp~Sd---~G~~rw~PkG~~i~~lle~Yv~~~-~~~~G~~eV~TP~m~d~~~~~~ 262 (613)
T PRK03991 188 FKKELVGGE-PPHVELMRKKELADYEPGSD---VGHMRYYPKGRLMKDLLEDYVYNL-VKELGAMPVETPNMYDLSHPAI 262 (613)
T ss_pred CCCCCCCCC-CCHHHHHHHCCCCCCCCCCC---CCCEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCEEECCCCHH
T ss_conf 134457789-83889998717655574787---775123554789999999999999-9863966845761640554025
Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECC-CCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 551422476776431---0002313454114544534205955504208853221-078843355434321222210200
Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPS-FRSEAGSAGRDTRGMLRQHQFWKC 284 (430)
Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~c-fR~EaGs~GkdtrGl~RvHQF~KV 284 (430)
T Consensus 263 sgH~~~f~e~my~~~~d~~~~~LrpmnCpgh~~i~~~~~~SYRdLPlRl~E~g~~syR~E~S--G-~L~GL~RVR~FTqd 339 (613)
T PRK03991 263 REHADKFGERQYRVKSDKKDLMLRFAACFGQFAMLKDMTISYKNLPLKMYELSDYSFRLEQR--G-ELVGLKRLRAFTMP 339 (613)
T ss_pred HHHHHHHCCCCEEEECCCHHHCCCCCCCCCCEEEECCCCCCHHHCCHHHHHHCCCEEECCCC--C-CEECEEEEECCCCC
T ss_conf 56887611134256327633230445786312351024457432646776522420212567--7-44440133235668
Q ss_pred EEEECCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC-------HHHEE----EEEEEECCCCCCE-----
Q ss_conf 21212786-5014578989999999999841067530378011784-------43402----4101101004833-----
Q gi|254780680|r 285 ELVSITRE-EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF-------SACKT----YDLEVWLAGQNLY----- 347 (430)
Q Consensus 285 E~~~~~~p-e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~-------~a~~~----~DiE~w~P~~~~y----- 347 (430)
T Consensus 340 DaHIFC~~~dQi~~E~~~~~~li~~v~~~fG~~y~~~~r~t~e~w~~ae~~l~~~~~~~g~~~~~e~~-~g~~~fyGPKI 418 (613)
T PRK03991 340 DMHTLCKDMDEAMEEFEKQHKLILETGRDLGRDYEVAFRFTEDFYEENKDWIVELAKREGKPVLVEIL-PERKHYWVLKV 418 (613)
T ss_pred CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-CCCCCEECCCE
T ss_conf 61131687789999999999999999986397637997078888889999999999972997147665-87631431416
Q ss_pred ---------EEEEEECCCCCHH-HHHCCCEEECCCCCCCCEEEEECCCH-HHHHHHHHHHHHHCC--CCCCCE-ECCCCC
Q ss_conf ---------2375310210076-45326847338998410104200432-289999999988346--899838-658222
Q gi|254780680|r 348 ---------REISSCSTCGNFQ-SRRMNSRYRDPNSKSLKFTHTLNGSG-VAVGRCLIAILENYL--NADGSV-TIPTVL 413 (430)
Q Consensus 348 ---------~Ev~S~Snc~D~Q-srRl~iry~~~~~~~~~~~htlNgt~-~A~~R~l~ailEn~q--~~dg~i-~iP~~L 413 (430)
T Consensus 419 Df~v~DalGR~wq~~TiQlDf~lp~RF~l~Yv~edg~~-~~PvmiHrAi~GS~ERfi~~LiE~~ag~~~~Gk~p~~P~WL 497 (613)
T PRK03991 419 EFAIIDSLGRPIENPTVQIDVENAERFGIKYVDENGKE-KYPVILHCSPTGSIERVIYALLEKAAKEEKEGKVPMLPTWL 497 (613)
T ss_pred EEEEEECCCCCEEEEEEEEECCCHHHCCCEEECCCCCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 89998468972450158983278322687899899989-58858972665639999999999850101247878888787
Q ss_pred CC
Q ss_conf 31
Q gi|254780680|r 414 RP 415 (430)
Q Consensus 414 ~p 415 (430)
T Consensus 498 aP 499 (613)
T PRK03991 498 SP 499 (613)
T ss_pred CC
T ss_conf 86