HHsearch alignment for GI: 254780680 and conserved domain: PRK12325
>PRK12325 prolyl-tRNA synthetase; Provisional.
Probab=99.89 E-value=7.3e-23 Score=190.64 Aligned_cols=266 Identities=20% Similarity=0.270 Sum_probs=205.4
Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH
Q ss_conf 20221173100011222167530105648899999999999862232032021235620278898655142247677643
Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT 222 (430)
Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~ 222 (430)
T Consensus 24 ~ll~~~g~i~------~~~~Gl~~wlP~G~~i~~~le~~ir~e-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~ 96 (438)
T PRK12325 24 RLMLRAGMIR------QQAAGIYSWLPLGLKVLKKIENIVREE-QNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI 96 (438)
T ss_pred HHHHHCCCCC------CCCCCCCEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCHHHHHHHHCEE
T ss_conf 9999707756------346873221605899999999999999-997499799877658778998628764555742121
Q ss_pred H----HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC-CCCCCHHH
Q ss_conf 1----000231345411454453420595550420885322107884335543432122221020021212-78650145
Q gi|254780680|r 223 T----DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFT 297 (430)
Q Consensus 223 ~----d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~-~~pe~S~~ 297 (430)
T Consensus 97 ~d~~~~~~~l~Pmnc~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s--p~--~GLlRvReF~m~Dah~F~~~~e~~~~ 172 (438)
T PRK12325 97 KDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR--PR--FGVMRGREFLMKDAYSFDLDEEGARK 172 (438)
T ss_pred ECCCCCEECCCCCCCHHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCC--CC--CCCCEEEEEECCCHHHCCCCHHHHHH
T ss_conf 347777431389984999999974034265425788764440112026--76--44101223330415432468899999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEE-------------EEEEE-----CCCC---------------
Q ss_conf 78989999999999841067530378011784434024-------------10110-----1004---------------
Q gi|254780680|r 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTY-------------DLEVW-----LAGQ--------------- 344 (430)
Q Consensus 298 ~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~-------------DiE~w-----~P~~--------------- 344 (430)
T Consensus 173 ~~~~v~~~y~~if~~lgl~~~~v~ad~g~igg~~s~Ef~~~~~~ged~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (438)
T PRK12325 173 SYNRMFVAYLRTFKRLGLKAIPMRADTGPIGGDLSHEFHILAETGESTVFYDKDFLDLPVPGEDIDYDADLQDIVDEWTS 252 (438)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999809944899823676677512674766522650246613334225676554623566789988876
Q ss_pred -----------C-------------CEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf -----------8-------------3323753102100764532684733899841010420043228999999998834
Q gi|254780680|r 345 -----------N-------------LYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENY 400 (430)
Q Consensus 345 -----------~-------------~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~ 400 (430)
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iEvG~if~lg~~ys~~~~~~~~~~dg~~-~~~~m~-~~GIgieR~ia~liE~~ 330 (438)
T PRK12325 253 LYAATDEMHDEAKFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKE-VPVHMG-SYGIGVSRLVAAIIEAS 330 (438)
T ss_pred HHHHHHHHCCHHHCCCCCHHHHEECCCEEEEEEEECCCCCCHHCCCCCCCCCCCC-CCEEEE-CCCCCHHHHHHHHHHHH
T ss_conf 5034664346755376675663011330331243045301522067444877773-222554-13342878999999983
Q ss_pred CCCCCCEECCCCCCCCCCCEEEEC
Q ss_conf 689983865822231018801307
Q gi|254780680|r 401 LNADGSVTIPTVLRPYMNNLAVIK 424 (430)
Q Consensus 401 q~~dg~i~iP~~L~pym~g~~~i~ 424 (430)
T Consensus 331 ~d~~G-~~wP~wlAP~Q--V~Iip 351 (438)
T PRK12325 331 HDDKG-IIWPESVAPFK--VGIIN 351 (438)
T ss_pred CCCCC-CCCCCCCCCEE--EEEEE
T ss_conf 64688-54676748657--99997