HHsearch alignment for GI: 254780680 and conserved domain: PRK12445

>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=95.23  E-value=0.015  Score=39.71  Aligned_cols=117  Identities=19%  Similarity=0.330  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999999862232032021235620278898655142247677643100023134541145445342059555042
Q gi|254780680|r  173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL  252 (430)
Q Consensus       173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi  252 (430)
T Consensus       185 ~~Rs~ii~~iR~~-l~~~gF~EVeTPil--~~~~gGa~Arp-f~t~~~~~~~~~yL~qSPQ-----Lykk~Lmv-gGf-d  253 (505)
T PRK12445        185 VVRSKILAAIRQF-MVARGFMEVETPMM--QVIPGGASARP-FITHHNALDLDMYLRIAPE-----LYLKRLVV-GGF-E  253 (505)
T ss_pred             HHHHHHHHHHHHH-HHHCCCEEEECCCC--CCCCCCCCCCE-EEECCCCCCCCEEECCCCH-----HHHHHHHH-CCC-C
T ss_conf             9999999999999-99779389978875--55458766610-3304667886743416939-----99999985-797-4


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L  313 (430)
T Consensus       254 RvfeI~r~FRnE----~~~~~---H~PEFT~lE~e------~af~d~~dvm~l~E~li~~i  301 (505)
T PRK12445        254 RVFEINRNFRNE----GISVR---HNPEFTMMELY------MAYADYHDLIELTESLFRTL  301 (505)
T ss_pred             CEEEHHHHHHCC----CCCCC---CCHHHHHHHHH------HHCCCHHHHHHHHHHHHHHH
T ss_conf             457627876078----88866---54445435687------63278989999999999999