HHsearch alignment for GI: 254780680 and conserved domain: TIGR00019
>TIGR00019 prfA peptide chain release factor 1; InterPro: IPR004373 This family describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognise and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cut-off for this model. RF-1 does not have a translational frameshift.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=95.64 E-value=0.26 Score=30.49 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-CCCHHHHHHHHHHHHH
Q ss_conf 44785199999999984698958899999999999999999999999999999999986---4-4998799999999999
Q gi|254780680|r 4 IQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAI---A-EGNLSLVDALKNETST 79 (430)
Q Consensus 4 ik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k---~-~~~~~~~~~Lk~e~~~ 79 (430)
T Consensus 10 L~~~~~~~~eL~~~L~dp~v~~d~~k~~~~~ke~~~l~-~i~~~~~~~~~~~~~~~~A~~~l~E~~~D~El~e------l 82 (373)
T TIGR00019 10 LESLEERYEELEELLSDPEVISDQDKLRKLSKEYSQLE-EIVDKYEEYKKAQEDLKEAKELLEEKGDDKELRE------L 82 (373)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH------H
T ss_conf 99999999999985068631136799999988620656-8999999999999999999999974258865899------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf 99886444666667788877443100225881122113555402420
Q gi|254780680|r 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIR 126 (430)
Q Consensus 80 Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~ 126 (430)
T Consensus 83 ak~El~~l~~~~~~LE~~Lk~LL--l--------PkDPND~kNv~lE 119 (373)
T TIGR00019 83 AKEELEELEKEIEELEEQLKILL--L--------PKDPNDEKNVILE 119 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCCCCCEEEE
T ss_conf 99999999988888999999726--8--------8697669534888