HHsearch alignment for GI: 254780680 and conserved domain: TIGR02367

>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=98.40  E-value=5.4e-07  Score=72.70  Aligned_cols=135  Identities=23%  Similarity=0.438  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH--HHHHHHHHHCCEECCCCCCHHHHHHH--HHCC
Q ss_conf             4889999999999986223203202123562027889865514224--76776431000231345411454453--4205
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF--ADDMFCTTDGRWLIPTSEVSLTNLYS--HEII  245 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f--~~~~y~~~d~l~Li~TaEvpL~~~~~--~~~l  245 (430)
T Consensus       241 ylGkler~it~ffvd-----rGfleiksPiliP~ey~ermGi~ndtelskqifrvdkn~ClrPmlaP~lynylrkldr~l  315 (453)
T TIGR02367       241 YLGKLEREITKFFVD-----RGFLEIKSPILIPLEYVERMGIDNDTELSKQIFRVDKNLCLRPMLAPTLYNYLRKLDRIL  315 (453)
T ss_pred             HHHHHHHHHHHHHHH-----CCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf             754676667666531-----240232363101056886507764025666666441001012100056899999987537


Q ss_pred             CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf             955504208853221078843355434321222210200212127865014578989999999999841067530378
Q gi|254780680|r  246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLC  323 (430)
Q Consensus       246 ~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~  323 (430)
T Consensus       316 P~---Pik~fe~GPCyrke--sdGke-----hleeft---m~nfCqmG-sGCtrenle~~i~~fl~~l~idf~ivGds  379 (453)
T TIGR02367       316 PD---PIKVFEVGPCYRKE--SDGKE-----HLEEFT---MLNFCQMG-SGCTRENLEALIKEFLDYLEIDFKIVGDS  379 (453)
T ss_pred             CC---CEEEEEECCCCCCC--CCCHH-----HHHHHH---HHHHHHCC-CCCCHHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf             89---64798606752435--65335-----666666---55543147-87326779999999887615424785242