HHsearch alignment for GI: 254780680 and conserved domain: TIGR03185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.41 E-value=0.82 Score=26.78 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=50.1
Q ss_pred HHHCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHH
Q ss_conf 785199999999984698958-899999999999999999999999999999999986449987------9999999999
Q gi|254780680|r 6 WIRQNPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLS------LVDALKNETS 78 (430)
Q Consensus 6 ~IRen~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~------~~~~Lk~e~~ 78 (430)
T Consensus 186 ~l~~dL~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~el~~~~~~~~~~~~~~~~~g~~l~~~r~ 265 (650)
T TIGR03185 186 QLAGDLTNYLRRRKKEELPSSILSEIEALEAELKEQSSKYEDLEQDIAHARQEIEEAQRSLESLKKKFEDEGGDIAEERE 265 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987501014579999999999999999999999999999999999999999999999985347799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999886444666667788877443
Q gi|254780680|r 79 TLKEQLPILEKEEHEVCSSLKKLI 102 (430)
Q Consensus 79 ~Lk~eik~le~~~~~le~el~~ll 102 (430)
T Consensus 266 ~le~~~~~l~~~~~~~~~~l~~~~ 289 (650)
T TIGR03185 266 QLERQLKEIEAKRKANRAELRELI 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998