HHsearch alignment for GI: 254780680 and conserved domain: cd00775
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=96.78 E-value=0.0015 Score=47.03 Aligned_cols=116 Identities=19% Similarity=0.356 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH-HHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 89999999999986223203202123562027889865514224767764-31000231345411454453420595550
Q gi|254780680|r 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC-TTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430)
Q Consensus 172 A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~-~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430)
T Consensus 8 ~~~Rs~i~~~iR~f-f~~~gF~Ev~TPiL-~-~~~~g~~~~~-f~~-~~~~~~~~~yL~qSpQ-----l~~q~l~~~-g~ 76 (329)
T cd00775 8 FIVRSKIISYIRKF-LDDRGFLEVETPML-Q-PIAGGAAARP-FIT-HHNALDMDLYLRIAPE-----LYLKRLIVG-GF 76 (329)
T ss_pred HHHHHHHHHHHHHH-HHHCCCEEEECCCC-C-CCCCCCCCCC-EEE-CCCCCCCCCCCCCCHH-----HHHHHHHHC-CC
T ss_conf 99999999999999-99889889979865-5-6688756753-132-2446786723068989-----999999856-77
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 42088532210788433554343212222102002121278650145789899999999998
Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312 (430)
Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~ 312 (430)
T Consensus 77 -~rvfqI~p~FR~E-~~-~--~---rHl~EFtmle~E~------~f~d~~dvm~~~E~li~~ 124 (329)
T cd00775 77 -ERVYEIGRNFRNE-GI-D--L---THNPEFTMIEFYE------AYADYNDMMDLTEDLFSG 124 (329)
T ss_pred -CCEEEEEECCCCC-CC-C--C---CCCCHHHHHHHHH------HCCCHHHHHHHHHHHHHH
T ss_conf -7679981022479-99-9--7---7473456345777------447999999999999999