HHsearch alignment for GI: 254780680 and conserved domain: cd00776

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=96.55  E-value=0.0039  Score=44.01  Aligned_cols=114  Identities=25%  Similarity=0.512  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             88999999999998622320320212356202788986551422476776431000231345411454453420595550
Q gi|254780680|r  171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL  250 (430)
Q Consensus       171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L  250 (430)
T Consensus        23 ~l~~Rs~i~~~iR~f-l~~~gF~EVeTP~L~~~~~-eg~a~~--f~~~--~~~~~~yL~~Spe-----l~-Kqlli~-G~   89 (322)
T cd00776          23 IFRIRSEVLRAFREF-LRENGFTEVHTPKITSTDT-EGGAEL--FKVS--YFGKPAYLAQSPQ-----LY-KEMLIA-AL   89 (322)
T ss_pred             HHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCC--CCCC--CCCCCEEECCCHH-----HH-HHHHHC-CC
T ss_conf             999999999999999-9988999997984007889-865466--7621--0587600154858-----89-999753-42


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEEEEEEECCCCCCHHH-HHHHHHHHHHHHHHH
Q ss_conf             42088532210788433554343212222--102002121278650145-789899999999998
Q gi|254780680|r  251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQH--QFWKCELVSITREEDSFT-EHERMLSCAEEILKR  312 (430)
Q Consensus       251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvH--QF~KVE~~~~~~pe~S~~-~~e~~~~~~~~i~~~  312 (430)
T Consensus        90 ~-rVfei~~~FR~E~~-~---t----~rH~pEFTmlE~------e~af~~d~~d~m~~~E~li~~  139 (322)
T cd00776          90 E-RVYEIGPVFRAEKS-N---T----RRHLSEFWMLEA------EMAFIEDYNEVMDLIEELIKY  139 (322)
T ss_pred             C-CEEEECCEEECCCC-C---C----CCCHHHHHHHHH------HHHHHCCHHHHHHHHHHHHHH
T ss_conf             4-43887261407999-8---7----534788876525------552332899999999999999